Database Resources
We are rebuilding our database, so some of our services, like MetaLab, are not available at the moment.

Populus ProbeSearch v3.1

Search custom primers, gRNAs or probes against sequenced poplar genomes for SNPs and/or indels

v3.1: Faster search speed with gene features, including CDS overlap, and Razers3 Aligner integration (gap/no gap options).

s717 ProbeSearch v2

Search custom primers, gRNAs or probes against the variant-substituted 717 genome (s717 v2). This is a rebuilt of the legacy version, with read coverage info. This version will be phased out upon official release of the 717 genome by JGI.

AGEseq on Galaxy

Compare amplicon sequences with reference target sequences to identify mutation (insertion/deletion) patterns.

Xue and Tsai (2015) Molecular Plant 8: 1428-1430

MetaLab

Access a web portal for storage, retrieval, and analysis of metabolic profiling data, coupling it to other relevant biological information (coming back soon).

Downloads

A list of programs and data available from our lab

GitHub

Remote home of our code