ProbeSet	v2Grade	v2Type	v2Best Gene Model	v2All Gene Models	v2Position	v2Marginal Match	v2UniProt	v2UniProtName	v2TAIR10	v2AtName	v2Rice	v2OsName	v2Medicago	v2MtName	v2Biological_process	v2Molecular_function	v2Cellular_component
Ptp.1.1.S1_at	A	A1TS	POPTR_0001s23140	POPTR_0001s23140 (11)	scaffold_1:22404529-22405642(-) (11)	NA	O23715	Proteasome subunit alpha type-3	AT2G27020.1	20S proteasome alpha subunit G1 	LOC_Os01g59600.2	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1.1.S1_s_at	A	A1TS	POPTR_0001s23140	POPTR_0001s23140 (11)	scaffold_1:22404015-22404170(-) (11)	NA	O23715	Proteasome subunit alpha type-3	AT2G27020.1	20S proteasome alpha subunit G1 	LOC_Os01g59600.2	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1002.1.A1_at	A	A1TS	POPTR_0016s07090	POPTR_0016s07090 (11)	scaffold_16:4937026-4937469(-) (11)	NA	Q6DW74	"Digalactosyldiacylglycerol synthase 1, chloroplastic"	AT3G11670.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g34000.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr7g084010.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.1006.1.A1_at	A	A1TS	POPTR_0015s07760	POPTR_0015s07760 (11)	scaffold_15:9057418-9057881(+) (11)	NA	Q8GYP6	Pentatricopeptide repeat-containing protein At1g18900	AT1G18900.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g44170.1	"pentatricopeptide, putative, expressed"	Medtr2g022110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1007.1.S1_at	A	A1TS	POPTR_0018s09980	POPTR_0018s09980 (11)	scaffold_18:11041204-11042069(+) (11)	NA	Q05001	NADPH--cytochrome P450 reductase	AT4G30210.1	P450 reductase 2 	LOC_Os09g38620.1	"NADPH reductase, putative, expressed"	Medtr8g129070.1	"Flavodoxin/nitric oxide synthase; Sulphite reductase [NADPH] flavoprotein, alpha chain "	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.1008.1.A1_at	A	A1TS	POPTR_0003s14300	POPTR_0003s14300 (10)	scaffold_3:14408370-14408911(+) (10)	NA	Q84TH9	Protein NLP7	AT4G24020.1	NIN like protein 7 	LOC_Os01g13540.1	"NIN, putative, expressed"	Medtr1g126970.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.101.1.S1_at	A	A1TS	POPTR_0001s44000	POPTR_0001s44000 (11)	scaffold_1:44477513-44478489(+) (11)	NA	NA	NA	AT5G54530.1	"Protein of unknown function, DUF538 "	LOC_Os07g36410.1	expressed protein	Medtr2g011040.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1010.1.A1_s_at	A	A1TS	POPTR_0001s05500	POPTR_0001s05500 (11)	scaffold_1:4219876-4220259(-) (11)	NA	Q9C690	Transcription factor bHLH122	AT1G51140.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr2g117830.2	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1011.1.S1_at	A	A1TS	POPTR_0016s06810	POPTR_0016s06810 (11)	scaffold_16:4603659-4603713(-) (11)	NA	Q54SW1	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179	AT3G11780.1	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1011.1.S1_s_at	A	A1TS	POPTR_0016s06810	POPTR_0016s06810 (11)	scaffold_16:4603934-4605279(-) (11)	NA	Q54SW1	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179	AT3G11780.1	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1012.1.S1_s_at	A	A1TS	POPTR_0015s11690	POPTR_0015s11690 (11)	scaffold_15:12253219-12253329(-) (11)	NA	Q00004	Signal recognition particle 68 kDa protein	AT5G61970.1	signal recognition particle-related / SRP-related 	LOC_Os08g23360.1	"signal recognition particle 68 kDa protein, putative, expressed"	Medtr4g152260.1	"Signal recognition particle 68 kDa protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1013.1.S1_at	A	A1MS	POPTR_0008s04730	POPTR_0008s04730 (9)	scaffold_8:2722003-2722439(+) (9)	NA	NA	NA	AT5G13590.1	unknown protein; Has 150 Blast hits to 121 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). 	NA	NA	Medtr1g146260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1020.1.S1_at	A	A1TS	POPTR_0013s07300	POPTR_0013s07300 (10)	scaffold_13:6065734-6065767(-) (10)	NA	NA	NA	AT2G44820.1	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g12480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1020.1.S1_s_at	A	A1TS	POPTR_0013s07300	POPTR_0013s07300 (9)	scaffold_13:6066064-6067746(-) (10)	NA	NA	NA	AT2G44820.1	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g12480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1022.1.S1_at	A	A1TS	POPTR_0030s00390	POPTR_0030s00390 (11)	scaffold_30:142953-144418(-) (11)	NA	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os12g42980.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.1022.1.S1_x_at	A	A1TS	POPTR_0030s00390	POPTR_0030s00390 (11)	scaffold_30:142954-144418(-) (11)	NA	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os12g42980.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.1023.1.A1_at	A	A1TS	POPTR_0006s11660	POPTR_0006s11660 (11)	scaffold_6:8882578-8882778(-) (11)	NA	NA	NA	AT2G36480.1	ENTH/VHS family protein 	LOC_Os09g39270.1	"ZOS9-20 - C2H2 zinc finger protein, expressed"	Medtr7g126610.1	"Regulation of nuclear pre-mRNA protein; Zinc finger, C2H2-type; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1023.1.A1_s_at	A	A1TS	POPTR_0006s11660	POPTR_0006s11660 (11)	scaffold_6:8882822-8883932(-) (11)	NA	NA	NA	AT2G36480.1	ENTH/VHS family protein 	LOC_Os09g39270.1	"ZOS9-20 - C2H2 zinc finger protein, expressed"	Medtr7g126610.1	"Regulation of nuclear pre-mRNA protein; Zinc finger, C2H2-type; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1025.1.A1_at	A	A1TS	POPTR_0008s09230	POPTR_0008s09230 (11)	scaffold_8:5725842-5726037(+) (11)	NA	NA	NA	AT1G13940.1	Plant protein of unknown function (DUF863) 	LOC_Os12g38870.2	expressed protein	Medtr5g046300.1	"Protein of unknown function DUF863, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1027.1.A1_at	A	A1TA	POPTR_0008s01490	POPTR_0008s01490 (10)	scaffold_8:725370-725547(-) (10)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT3G03770.2	Leucine-rich repeat protein kinase family protein 	LOC_Os07g07230.2	"protein kinase, putative, expressed"	Medtr7g103210.1	Protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.1028.1.S1_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (10)	scaffold_13:1654002-1654047(+) (10)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.103.1.S1_s_at	A	A1TS	POPTR_0005s16680	POPTR_0005s16680 (11)	scaffold_5:13680495-13681063(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT1G36070.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g26870.1	"WD-40 repeat family protein, putative, expressed"	CU651566_11.1	"Uncharacterized WD repeat-containing protein C2A9.03, related CU651566.9 58826-64265 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1030.1.A1_at	A	A1TS	POPTR_0004s15750	POPTR_0004s15750 (11)	scaffold_4:16309836-16310728(-) (11)	NA	Q8H124	"Uncharacterized protein At2g34460, chloroplastic"	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g01044.1	"isoflavone reductase, putative, expressed"	Medtr8g121780.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1030.2.A1_at	A	A1TS	POPTR_0015s13490	POPTR_0015s13490 (9)	scaffold_15:13415933-13416075(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1034.1.A1_at	A	A1TS	POPTR_0006s14570	POPTR_0006s14570 (9)	scaffold_13:4524750-4524975(-) (9)//scaffold_6:11899226-11899443(-) (11)	NA	Q6PD62	RNA polymerase-associated protein CTR9 homolog	AT2G06210.1	binding 	LOC_Os07g29360.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1035.1.S1_at	A	A1TA	POPTR_0009s07210	POPTR_0009s07210 (10)	scaffold_9:6794118-6794555(-) (10)	NA	Q9Y4W2	Protein LAS1 homolog	AT5G12220.1	las1-like family protein 	LOC_Os12g08800.1	"las1-like family protein, putative, expressed"	Medtr5g096290.1	Las1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1037.1.S1_s_at	A	A1TS	POPTR_0013s12390	POPTR_0013s12390 (11)	scaffold_13:13028959-13029486(-) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.1037.2.S1_a_at	A	A1TS	POPTR_0013s12390	POPTR_0013s12390 (11)	scaffold_13:13030385-13030712(-) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.1038.1.A1_at	A	A1TS	POPTR_0002s15880	POPTR_0002s15880 (9)	scaffold_2:11829163-11829663(-) (9)	NA	NA	NA	AT1G01770.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). 	LOC_Os07g27350.1	"atuA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1039.1.A1_at	A	A1MS	POPTR_0005s22100	POPTR_0005s22100 (11)	scaffold_5:21085121-21086977(-) (11)	NA	O50044	2-dehydro-3-deoxyphosphooctonate aldolase	AT1G79500.4	Aldolase-type TIM barrel family protein 	LOC_Os12g10784.2	"2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed"	Medtr7g092790.1	2-dehydro-3-deoxyphosphooctonate aldolase 	GO:0009058|biosynthetic process	NA	NA
Ptp.1041.1.S1_at	A	A1TS	POPTR_0001s11420	POPTR_0001s11420 (9)	scaffold_1:8894370-8895528(+) (9)	NA	NA	NA	AT1G64680.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os08g02210.2	expressed protein	Medtr3g109380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1042.1.A1_at	A	A1TS	POPTR_0003s18520	POPTR_0003s18520 (11)	scaffold_3:17571799-17573913(-) (11)	NA	NA	NA	AT1G79660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16559.1	expressed protein	Medtr2g010950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1043.1.A1_at	A	A1TS	POPTR_0003s19790	POPTR_0003s19790 (11)	scaffold_3:18423226-18423989(-) (11)	NA	Q8L7A4	Probable ADP-ribosylation factor GTPase-activating protein AGD11	AT3G07940.1	Calcium-dependent ARF-type GTPase activating protein family 	LOC_Os01g72230.1	"stromal membrane-associated protein, putative, expressed"	Medtr3g020140.1	C2; Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.1045.1.A1_at	A	A1TS	POPTR_0008s14230	POPTR_0008s14230 (11)	scaffold_8:9419911-9422021(+) (11)	NA	Q5REY7	UBX domain-containing protein 7	AT1G14570.1	UBX domain-containing protein 	LOC_Os04g57520.1	"UBX domain-containing protein, putative, expressed"	AC229689_1.1	UBX; UAS; Thioredoxin-like fold AC229689.5 4995-12311 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1046.1.A1_at	A	A1TS	POPTR_0011s05510	POPTR_0011s05510 (9)	scaffold_11:5468809-5469077(-) (9)	NA	Q2T9J0	Peroxisomal leader peptide-processing protease	AT1G28320.1	protease-related 	LOC_Os05g41810.1	"OsDegp8 - Putative Deg protease homologue, expressed"	Medtr2g017690.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1049.1.S1_at	A	A1TS	POPTR_0001s46750	POPTR_0001s46750 (11)	scaffold_1:47154847-47155352(+) (11)	NA	NA	NA	AT3G26710.1	cofactor assembly of complex C 	LOC_Os11g32320.1	"CCB1, putative, expressed"	Medtr7g097210.1	"CPLD51 protein required for cyt b6 assembly, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.105.1.S1_s_at	A	A1TS	POPTR_0005s23220	POPTR_0005s23220 (11)	scaffold_5:22053706-22054256(-) (11)	NA	Q99633	Pre-mRNA-splicing factor 18	AT1G03140.1	splicing factor Prp18 family protein 	LOC_Os07g38420.1	"pre-mRNA-splicing factor, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0008380|RNA splicing	NA	GO:0005681|spliceosomal complex
Ptp.1052.1.A1_at	A	A1TS	POPTR_0006s25960	POPTR_0006s25960 (9)	scaffold_6:24259556-24259943(-) (9)	NA	O49343	Pentatricopeptide repeat-containing protein At2g30780	AT2G30780.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06370.2	"PPR repeat domain containing protein, putative, expressed"	Medtr1g009460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1058.1.A1_s_at	A	A1TS	POPTR_0011s13910	POPTR_0011s13910 (11)	scaffold_11:16530695-16531463(-) (11)	NA	Q3U829	Uncharacterized protein KIAA0415	AT3G15160.1	unknown protein; Has 266 Blast hits to 264 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os04g53530.1	expressed protein	Medtr4g110580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1062.1.A1_at	A	A1TS	POPTR_0009s04250	POPTR_0009s04250 (11)	scaffold_9:4714775-4716075(-) (11)	NA	O04856	Serine/threonine-protein phosphatase PP1 isozyme 1	AT5G59160.3	type one serine/threonine protein phosphatase 2 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.1063.2.A1_at	A	A1TS	POPTR_0016s04070	POPTR_0016s04070 (9)	scaffold_16:2322839-2325248(-) (9)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.1063.2.A1_s_at	A	A1TS	POPTR_0016s04070	POPTR_0016s04070 (11)	scaffold_16:2325039-2325181(-) (11)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.1064.1.A1_at	A	A1TS	POPTR_0010s05180	POPTR_0010s05180 (11)	scaffold_10:6622421-6622743(-) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G60590.1	Pectin lyase-like superfamily protein 	LOC_Os01g44970.1	"polygalacturonase, putative, expressed"	Medtr5g035390.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.1065.1.S1_at	A	A1TS	POPTR_0014s00330	POPTR_0014s00330 (11)	scaffold_14:138746-139518(+) (11)	NA	NA	NA	AT3G13062.2	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os02g26860.1	"START domain containing protein, putative, expressed"	Medtr4g163310.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1066.1.A1_s_at	A	A1TS	POPTR_0001s46420	POPTR_0001s46420 (11)	scaffold_1:46809187-46809392(-) (11)	NA	Q9SA76	"Pentatricopeptide repeat-containing protein At1g30610, chloroplastic"	AT1G30610.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os01g48380.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g101620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1067.1.S1_s_at	A	A1TS	POPTR_0006s24460	POPTR_0006s24460 (11)	scaffold_6:23065235-23065669(+) (11)	NA	A4UVI1	Fatty acid desaturase 1	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	Medtr1g020170.1	Fatty acid desaturase/sphingolipid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0016491|oxidoreductase activity	NA
Ptp.107.1.S1_at	A	A1TS	POPTR_0009s10310	POPTR_0009s10310 (11)	scaffold_9:8874910-8875282(-) (11)	NA	Q9FXA4	U-box domain-containing protein 26	AT1G49780.1	plant U-box 26 	LOC_Os02g34410.1	"U-box domain-containing protein, putative, expressed"	Medtr4g130110.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.1072.1.A1_s_at	A	A1TS	POPTR_0010s18390	POPTR_0010s18390 (11)	scaffold_10:16640425-16641854(+) (11)	NA	Q941Q3	Zinc finger CCCH domain-containing protein 37	AT3G12680.1	floral homeotic protein (HUA1) 	LOC_Os01g42970.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g089530.1	"Zinc finger, CCCH-type; Sugar transporter superfamily "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.1073.1.A1_at	A	A1TS	POPTR_0010s24160	POPTR_0010s24160 (10)	scaffold_10:20507985-20508363(-) (10)	NA	Q8W571	RING-H2 finger protein ATL32	AT4G40070.1	RING/U-box superfamily protein 	LOC_Os02g45390.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1074.1.S1_at	A	A1TS	POPTR_0001s17220	POPTR_0001s17220 (10)	scaffold_1:14063757-14063973(-) (10)	NA	O14111	C2 domain-containing protein C31G5.15	AT4G25970.1	phosphatidylserine decarboxylase 3 	LOC_Os01g72940.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr2g008340.1	C2; Calcium-binding EF-hand; Phosphatidylserine decarboxylase 	GO:0008654|phospholipid biosynthetic process	GO:0004609|phosphatidylserine decarboxylase activity	NA
Ptp.1074.1.S1_s_at	A	A1TS	POPTR_0001s17220	POPTR_0001s17220 (10)	scaffold_1:14062478-14063740(-) (10)	NA	O14111	C2 domain-containing protein C31G5.15	AT4G25970.1	phosphatidylserine decarboxylase 3 	LOC_Os01g72940.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr2g008340.1	C2; Calcium-binding EF-hand; Phosphatidylserine decarboxylase 	GO:0008654|phospholipid biosynthetic process	GO:0004609|phosphatidylserine decarboxylase activity	NA
Ptp.1075.1.A1_a_at	A	A1TS	POPTR_0014s15300	POPTR_0014s15300 (11)	scaffold_14:11370877-11371118(-) (11)	NA	NA	NA	AT2G32500.1	Stress responsive alpha-beta barrel domain protein 	LOC_Os03g02020.2	"stress responsive A/B Barrel domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1077.1.A1_at	A	A1TS	POPTR_0012s05990	POPTR_0012s05990 (9)	scaffold_12:6037126-6037284(-) (9)	NA	P02723	"ADP,ATP carrier protein"	AT5G17400.1	endoplasmic reticulum-adenine nucleotide transporter 1 	LOC_Os11g43960.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g154910.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1078.1.S1_at	A	A1TS	POPTR_0004s04000	POPTR_0004s04000 (9)	scaffold_4:2829009-2829823(-) (9)	NA	Q65Z40	Wings apart-like protein homolog	AT1G11060.1	WAPL (Wings apart-like protein regulation of heterochromatin) protein 	LOC_Os10g35380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1079.1.S1_at	A	A1TS	POPTR_0016s03560	POPTR_0016s03560 (9)	scaffold_16:1906987-1908468(-) (9)	NA	Q5YLB4	"DNA gyrase subunit B, chloroplastic/mitochondrial"	AT5G04130.1	DNA GYRASE B2 	LOC_Os01g16290.1	"DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed"	Medtr7g106810.1	DNA gyrase B; ; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0005524|ATP binding	GO:0005694|chromosome
Ptp.1080.1.S1_s_at	A	A1TS	POPTR_0010s13990	POPTR_0010s13990 (11)	scaffold_10:13700265-13700460(+) (11)	NA	Q84V83	Leucoanthocyanidin reductase	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g15360.1	nmrA-like family domain containing protein	Medtr1g118020.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.1082.1.A1_a_at	A	A1TS	POPTR_0016s00310	POPTR_0016s00310 (11)	scaffold_16:46220-46289(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1082.1.A1_at	A	A1TS	POPTR_0016s00310	POPTR_0016s00310 (11)	scaffold_16:46118-46588(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1083.1.S1_at	A	A1TS	POPTR_0010s07920	POPTR_0010s07920 (11)	scaffold_10:8887625-8887666(+) (11)	NA	O22795	"50S ribosomal protein L28, chloroplastic"	AT2G33450.1	Ribosomal L28 family 	LOC_Os05g01110.1	"ribosomal protein L28 protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1085.1.A1_s_at	A	A1TS	POPTR_0005s27170	POPTR_0005s27170 (11)	scaffold_5:24949213-24949874(-) (11)	NA	Q2KIG3	Carboxypeptidase B2	AT5G42320.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os02g02710.1	"zinc carboxypeptidase family protein, putative, expressed"	NA	NA	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004181|metallocarboxypeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.1086.1.A1_at	A	A1TS	POPTR_0007s13760	POPTR_0007s13760 (11)	scaffold_7:13803207-13803623(-) (11)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr5g021420.1	"SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.1087.1.A1_at	A	A2TS	POPTR_0012s09300	POPTR_0012s09300 (11)//POPTR_0427s00200 (10)	scaffold_12:10332220-10333877(-) (11)//scaffold_427:9940-11597(-) (10)	NA	NA	NA	AT5G63160.1	BTB and TAZ domain protein 1 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr8g109870.1	"Zinc finger, TAZ-type; BTB/POZ; ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.1088.1.S1_s_at	A	A1TS	POPTR_0011s07300	POPTR_0011s07300 (11)	scaffold_11:8058453-8059064(-) (11)	NA	P25776	Oryzain alpha chain	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g068320.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.1089.1.A1_a_at	A	A1TS	POPTR_0012s01130	POPTR_0012s01130 (10)	scaffold_12:783509-783546(-) (11)//scaffold_12:783586-783622(-) (10)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr2g008380.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1090.1.S1_at	A	A1TS	POPTR_0004s20790	POPTR_0004s20790 (11)	scaffold_4:20193942-20195154(-) (11)	NA	Q9ZE28	Uncharacterized protein RP120	AT5G22350.1	Protein of unknown function (DUF1022) 	LOC_Os02g33230.1	"nucleoside-diphosphate-sugar epimerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1094.1.S1_s_at	A	A1TS	POPTR_0014s14720	POPTR_0014s14720 (11)	scaffold_14:10803421-10803742(+) (11)	NA	Q9LYT5	Probable pectinesterase/pectinesterase inhibitor 35	AT3G59010.1	pectin methylesterase 61 	LOC_Os02g54190.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.1097.1.A1_at	A	A1TS	POPTR_0009s05180	POPTR_0009s05180 (11)	scaffold_9:5330039-5330481(-) (11)	NA	Q55CD9	Probable NADH dehydrogenase	AT2G29990.1	alternative NAD(P)H dehydrogenase 2 	LOC_Os01g61410.1	"NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed"	Medtr5g079530.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.1098.1.A1_at	A	A1TS	POPTR_0008s19960	POPTR_0008s19960 (11)	scaffold_8:13790026-13791358(+) (11)	NA	P55229	"Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic"	AT5G19220.1	ADP glucose pyrophosphorylase large subunit 1 	LOC_Os03g52460.1	"glucose-1-phosphate adenylyltransferase large subunit, putative, expressed"	Medtr8g146330.1	Nucleotidyl transferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.1099.1.A1_at	A	A1TS	POPTR_0013s14050	POPTR_0013s14050 (9)	scaffold_13:14383113-14383446(+) (9)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT4G03400.1	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr2g096120.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.11.1.A1_at	A	A1TS	POPTR_0010s18060	POPTR_0010s18060 (11)	scaffold_10:16440117-16440635(-) (11)	NA	Q9SAK0	"Pentatricopeptide repeat-containing protein At1g79490, mitochondrial"	AT1G79490.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g52290.1	"PPR repeat domain containing protein, putative, expressed"	AC234703_7.1	"pentatricopeptide, related AC234703.1 43858-47785 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1102.1.S1_s_at	A	A1TS	POPTR_0012s11900	POPTR_0012s11900 (10)	scaffold_12:12253202-12253235(-) (10)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
Ptp.1105.2.A1_s_at	A	A1TS	POPTR_0013s07230	POPTR_0013s07230 (11)	scaffold_13:5938841-5938883(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.1107.1.A1_at	A	A1TS	POPTR_0002s17100	POPTR_0002s17100 (11)	scaffold_2:12880686-12881297(-) (11)	NA	Q9FFQ1	DEAD-box ATP-dependent RNA helicase 31	AT5G63630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g43120.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1108.1.A1_a_at	A	A1TS	POPTR_0015s06480	POPTR_0015s06480 (11)	scaffold_15:7347902-7348355(+) (11)	NA	Q8RWD0	Zinc finger protein CONSTANS-LIKE 16	AT1G25440.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g15330.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr4g158260.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1108.1.A1_s_at	A	A1TS	POPTR_0015s06480	POPTR_0015s06480 (11)	scaffold_15:7347246-7347740(+) (11)	NA	Q8RWD0	Zinc finger protein CONSTANS-LIKE 16	AT1G25440.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g15330.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr4g158260.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1110.1.A1_s_at	A	A1TS	POPTR_0003s05100	POPTR_0003s05100 (11)	scaffold_3:6321071-6321339(+) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.1111.1.A1_s_at	A	A1TS	POPTR_0007s13260	POPTR_0007s13260 (9)	scaffold_7:13378069-13378503(-) (9)	NA	Q9AR07	Jasmonate O-methyltransferase	AT1G19640.1	jasmonic acid carboxyl methyltransferase 	LOC_Os11g15130.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr5g020860.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.1114.1.S1_at	A	A1TS	POPTR_0006s06700	POPTR_0006s06700 (9)	scaffold_6:4852266-4853625(+) (9)	NA	Q8GW46	Axial regulator YABBY 5	AT2G26580.2	plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr8g120820.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1115.1.S1_at	A	A1TS	POPTR_0001s30800	POPTR_0001s30800 (11)	scaffold_1:29259810-29259846(+) (11)	NA	Q94C77	Receptor protein kinase-like protein At4g34220	AT4G34220.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g02250.1	"transposon protein, putative, unclassified, expressed"	Medtr7g076330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.112.2.S1_a_at	A	A1TS	POPTR_0010s12320	POPTR_0010s12320 (9)	scaffold_10:12349735-12351095(+) (9)	NA	Q9S7Z8	Auxin efflux carrier component 3	AT1G70940.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.1120.1.S1_at	A	A1TS	POPTR_0004s14890	POPTR_0004s14890 (9)	scaffold_4:15541626-15542470(-) (9)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1122.2.S1_at	A	A1TS	POPTR_0010s16010	POPTR_0010s16010 (11)	scaffold_10:15080164-15080349(-) (11)	NA	P29344	"30S ribosomal protein S1, chloroplastic"	AT5G30510.1	ribosomal protein S1 	LOC_Os03g20100.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
Ptp.1127.1.A1_at	A	A1TS	POPTR_0012s03330	POPTR_0012s03330 (11)	scaffold_12:2647223-2647776(+) (11)	NA	Q03091	Extracellular ribonuclease	NA	NA	LOC_Os02g26400.2	"nuclease, EndA/NucM family protein, expressed"	Medtr8g130270.1	Endonuclease I 	NA	GO:0004518|nuclease activity	NA
Ptp.113.1.S1_s_at	A	A1TS	POPTR_0009s13470	POPTR_0009s13470 (11)	scaffold_9:10705820-10706296(-) (11)	NA	Q8L883	Auxin transporter-like protein 5	AT2G21050.1	like AUXIN RESISTANT 2 	LOC_Os03g14080.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g097960.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1133.2.A1_a_at	A	A1TS	POPTR_0006s04960	POPTR_0006s04960 (11)	scaffold_6:3459753-3459788(-) (11)	NA	O50314	Magnesium-chelatase subunit H	AT5G13630.1	"magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) "	LOC_Os03g20700.2	"magnesium-chelatase, putative, expressed"	NA	NA	GO:0009058|biosynthetic process	NA	NA
Ptp.1134.1.S1_x_at	A	A1TS	POPTR_0001s42970	POPTR_0001s42970 (10)	scaffold_1:43043750-43045728(+) (10)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.1137.1.S1_at	A	A1TS	POPTR_0009s10520	POPTR_0009s10520 (11)	scaffold_9:9022140-9023673(+) (11)	NA	NA	NA	AT3G19220.1	protein disulfide isomerases 	LOC_Os09g28480.1	expressed protein	Medtr4g129620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.114.1.S1_at	A	A1TS	POPTR_0010s19840	POPTR_0010s19840 (11)	scaffold_10:17628320-17629688(-) (11)	NA	Q8L884	Auxin transporter-like protein 4	AT2G38120.1	Transmembrane amino acid transporter family protein 	LOC_Os01g63770.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g024670.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1140.1.A1_at	A	A1TS	POPTR_0013s00790	POPTR_0013s00790 (11)	scaffold_13:404596-405279(-) (11)	NA	O23403	"PsbP domain-containing protein 1, chloroplastic"	AT4G15510.1	Photosystem II reaction center PsbP family protein 	LOC_Os12g37710.1	"PsbP, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.1142.1.S1_at	A	A1MS	POPTR_0001s11410	POPTR_0001s11410 (10)	scaffold_1:8880225-8880511(-) (10)	NA	NA	NA	AT4G24140.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g38860.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g103890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1145.1.A1_at	A	A1TS	POPTR_0014s09840	POPTR_0014s09840 (11)	scaffold_14:7371361-7372977(+) (11)	POPTR_0002s17650 (6)	Q5U5C5	U4/U6 small nuclear ribonucleoprotein Prp31	AT1G60170.1	pre-mRNA processing ribonucleoprotein binding region-containing protein 	LOC_Os04g46890.2	"pre-mRNA-processing factor 31, putative, expressed"	Medtr7g037700.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1147.1.S1_at	A	A1TS	POPTR_0008s12220	POPTR_0008s12220 (10)	scaffold_8:7891082-7892181(-) (10)	NA	Q9ZSY2	Chaperone protein dnaJ 15	AT1G68370.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g32870.2	"heat shock protein DnaJ, putative, expressed"	Medtr1g140590.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.1148.1.S1_s_at	A	A1TS	POPTR_0001s32000	POPTR_0001s32000 (11)	scaffold_1:30444097-30444366(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1150.1.S1_at	A	A1TS	POPTR_0010s21970	POPTR_0010s21970 (11)	scaffold_10:19073277-19073705(-) (11)	NA	NA	NA	AT5G13560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). 	LOC_Os05g06980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1151.1.S1_s_at	A	A1TS	POPTR_0005s23590	POPTR_0005s23590 (11)	scaffold_5:22313537-22313813(+) (11)	POPTR_0284s00200 (7)	Q94LX1	"Chlorophyllase-1, chloroplastic"	AT1G19670.1	chlorophyllase 1 	LOC_Os10g28370.1	"chlorophyllase-2, chloroplast precursor, putative, expressed"	Medtr8g096370.1	Chlorophyllase 	GO:0015996|chlorophyll catabolic process	GO:0047746|chlorophyllase activity	NA
Ptp.1152.1.S1_s_at	A	A1TS	POPTR_0005s18350	POPTR_0005s18350 (11)	scaffold_5:16502841-16503326(-) (11)	NA	Q9SLN1	Filament-like plant protein 7	AT2G23360.1	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1153.1.A1_at	A	A1TS	POPTR_0003s05150	POPTR_0003s05150 (11)	scaffold_3:6360676-6360955(+) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009370.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.1154.1.S1_s_at	A	A1TS	POPTR_0005s22060	POPTR_0005s22060 (11)	scaffold_5:21066341-21067217(+) (11)	NA	P0C031	Ubiquitin-NEDD8-like protein RUB2	AT1G31340.1	related to ubiquitin 1 	LOC_Os06g44080.1	"ubiquitin family protein, putative, expressed"	Medtr5g100010.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1159.1.A1_a_at	A	A1TA	POPTR_0008s01230	POPTR_0008s01230 (11)	scaffold_8:599001-599110(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1159.1.A1_at	A	A1TA	POPTR_0008s01230	POPTR_0008s01230 (10)	scaffold_8:598576-599067(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.116.1.S1_s_at	A	A1TS	POPTR_0015s05130	POPTR_0015s05130 (11)	scaffold_15:5442834-5443323(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os03g51110.1	"MYB family transcription factor, putative, expressed"	Medtr6g078130.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1160.1.A1_at	A	A1TS	POPTR_0007s01230	POPTR_0007s01230 (10)	scaffold_7:671954-672714(-) (10)	NA	Q6LA43	Two-component response regulator-like APRR2	AT2G20570.1	GBF's pro-rich region-interacting factor 1 	LOC_Os06g24070.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr4g108850.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1161.1.S1_s_at	A	A1TS	POPTR_0007s12630	POPTR_0007s12630 (11)	scaffold_7:12894768-12897471(+) (11)	NA	NA	NA	AT4G36660.1	Protein of unknown function (DUF1195) 	LOC_Os07g41660.1	expressed protein	Medtr5g019780.1	Protein of unknown function DUF1195 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1162.1.A1_at	A	A1TS	POPTR_0005s11850	POPTR_0005s11850 (11)	scaffold_5:8614259-8614781(+) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	Medtr8g090220.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.1166.1.S1_at	A	A1TS	POPTR_0010s22220	POPTR_0010s22220 (10)	scaffold_10:19202489-19202828(-) (10)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g120700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1168.1.A1_at	A	A1TS	POPTR_0008s15060	POPTR_0008s15060 (11)	scaffold_8:10051260-10051451(+) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1168.2.A1_s_at	A	A1TS	POPTR_0008s15060	POPTR_0008s15060 (11)	scaffold_8:10057385-10057943(+) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1169.1.A1_at	A	A1TA	POPTR_0008s17200	POPTR_0008s17200 (11)	scaffold_8:11548768-11551654(+) (11)	NA	NA	NA	AT1G04530.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04710.1	expressed protein	Medtr1g087320.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1171.1.A1_at	A	A1TS	POPTR_0009s09370	POPTR_0009s09370 (10)	scaffold_9:8320931-8321308(+) (10)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g55450.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1172.1.S1_s_at	A	A1MS	POPTR_0014s16580	POPTR_0014s16580 (11)	scaffold_14:12668741-12668910(+) (11)	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os07g41580.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr5g103350.1	"Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone "	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.1178.1.A1_at	A	A1TS	POPTR_0006s16370	POPTR_0006s16370 (9)	scaffold_6:14308401-14309470(+) (9)	NA	Q8W593	"Probable lactoylglutathione lyase, chloroplast"	AT1G67280.1	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein 	LOC_Os05g14194.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1179.1.A1_at	A	A1TS	POPTR_0001s30330	POPTR_0001s30330 (11)	scaffold_1:28844550-28845059(+) (11)	NA	NA	NA	AT3G19553.1	Amino acid permease family protein 	LOC_Os03g37984.2	"amino acid permease family protein, putative, expressed"	Medtr5g005210.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1180.1.A1_at	A	A1TS	POPTR_0002s02820	POPTR_0002s02820 (10)	scaffold_2:1722164-1722625(-) (10)	NA	NA	NA	AT5G42520.1	basic pentacysteine 6 	LOC_Os06g04010.2	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1181.1.S1_s_at	A	A1TS	POPTR_0014s15390	POPTR_0014s15390 (11)	scaffold_14:11464276-11464599(-) (11)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT4G15440.1	hydroperoxide lyase 1 	LOC_Os02g02000.1	"cytochrome P450, putative, expressed"	Medtr2g104500.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1183.1.A1_s_at	A	A1TS	POPTR_0005s02270	POPTR_0005s02270 (11)	scaffold_5:1487793-1488092(+) (11)	NA	NA	NA	AT5G27860.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). 	LOC_Os12g36740.1	"splicing factor, arginine/serine-rich 18, putative, expressed"	Medtr7g138420.1	"zgc:136322 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1184.1.A1_a_at	A	A1TS	POPTR_0005s22580	POPTR_0005s22580 (11)	scaffold_5:21494789-21494973(-) (11)	POPTR_0002s05920 (7)	Q680C0	GDSL esterase/lipase At4g10955	AT5G50890.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g54810.1	"lipase, putative, expressed"	Medtr5g098440.1	"lipase class 3 family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1184.2.A1_at	A	A1TS	POPTR_0005s22580	POPTR_0005s22580 (11)	scaffold_5:21494423-21494690(-) (11)	NA	Q680C0	GDSL esterase/lipase At4g10955	AT5G50890.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g54810.1	"lipase, putative, expressed"	Medtr5g098440.1	"lipase class 3 family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1187.1.A1_s_at	A	A1TS	POPTR_0002s12070	POPTR_0002s12070 (11)	scaffold_2:8972388-8973046(-) (11)	NA	NA	NA	AT5G43130.1	TBP-associated factor 4 	LOC_Os02g43750.1	"transcription initiation factor, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006352|transcription initiation||GO:0006461|protein complex assembly	GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
Ptp.119.1.S1_at	A	A1TS	POPTR_0001s09850	POPTR_0001s09850 (10)	scaffold_1:7596803-7597164(-) (10)	NA	P31531	1-aminocyclopropane-1-carboxylate synthase	AT4G11280.1	1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 	LOC_Os04g48850.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr7g088850.1	Aminotransferases class-I pyridoxal-phosphate-binding site; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.1190.1.S1_at	A	A1TS	POPTR_0007s12190	POPTR_0007s12190 (11)	scaffold_7:12536869-12537348(+) (11)	NA	Q8W4F0	Protein DA1-related 1	AT4G36860.1	LIM domain-containing protein 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
Ptp.1191.1.A1_at	A	A1TS	POPTR_0018s12970	POPTR_0018s12970 (9)	scaffold_18:13434949-13435126(+) (9)	NA	O22773	"Thylakoid lumenal 16.5 kDa protein, chloroplastic"	AT4G02530.1	chloroplast thylakoid lumen protein 	LOC_Os06g49160.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed"	Medtr8g120710.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1194.1.A1_at	A	A1TS	POPTR_0016s07890	POPTR_0016s07890 (11)	scaffold_16:5720084-5720349(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.1196.1.A1_at	A	A1TS	POPTR_0002s16230	POPTR_0002s16230 (11)	scaffold_2:12145021-12145516(+) (11)	NA	Q6EVK6	ATP-dependent helicase BRM	AT2G46020.2	"transcription regulatory protein SNF2, putative "	LOC_Os02g02290.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g087810.1	"SNF2-related; Bromodomain; Helicase, C-terminal; ; "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0005634|nucleus
Ptp.1197.1.A1_at	A	A1TS	POPTR_0007s13200	POPTR_0007s13200 (10)	scaffold_7:13321756-13321985(-) (10)	NA	C6E2H7	GTP-binding protein era homolog	AT5G66470.1	RNA binding;GTP binding 	LOC_Os05g49220.2	"GTP-binding protein, putative, expressed"	Medtr5g020330.1	"GTP-binding protein, HSR1-related "	NA	GO:0003723|RNA binding||GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1198.1.A1_at	A	A1TS	POPTR_0013s07900	POPTR_0013s07900 (11)	scaffold_13:6852446-6852481(+) (11)	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity||GO:0008270|zinc ion binding	GO:0016020|membrane
Ptp.1198.1.A1_s_at	A	A1TS	POPTR_0013s07900	POPTR_0013s07900 (11)	scaffold_13:6852469-6852675(+) (11)	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity||GO:0008270|zinc ion binding	GO:0016020|membrane
Ptp.1199.1.S1_at	A	A1TS	POPTR_0006s00620	POPTR_0006s00620 (11)	scaffold_6:331086-331621(+) (11)	NA	Q651X6	Cellulose synthase-like protein E6	AT1G55850.1	cellulose synthase like E1 	LOC_Os09g30130.1	"CSLE6 - cellulose synthase-like family E, expressed"	Medtr3g079530.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.12.1.A1_at	A	A1TS	POPTR_0008s14910	POPTR_0008s14910 (11)	scaffold_8:9931814-9933724(+) (11)	NA	Q5T280	Uncharacterized protein C9orf114	AT5G19300.1	"CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). "	LOC_Os04g17064.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1200.1.A1_at	A	A1TS	POPTR_0015s02200	POPTR_0015s02200 (11)	scaffold_15:1524574-1524688(-) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
Ptp.1202.1.A1_at	A	A1TS	POPTR_0013s07300	POPTR_0013s07300 (11)	scaffold_13:6065236-6065586(-) (11)	NA	NA	NA	AT2G44820.1	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g12480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1203.1.A1_s_at	A	A1TS	POPTR_0010s16690	POPTR_0010s16690 (11)	scaffold_10:15558363-15558643(-) (11)	NA	Q8GYW9	Probable methyltransferase PMT4	AT2G03480.2	QUASIMODO2 LIKE 2 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr4g115450.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1205.1.S1_at	A	A1TS	POPTR_0001s45870	POPTR_0001s45870 (11)	scaffold_1:46371692-46372207(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1206.1.A1_at	A	A1TS	POPTR_0001s03590	POPTR_0001s03590 (11)	scaffold_1:2867121-2867397(+) (11)	NA	NA	NA	AT1G80860.1	phospholipid N-methyltransferase 	LOC_Os02g39880.1	expressed protein	Medtr4g022030.1	Phospholipid methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1208.1.A1_at	A	A1TS	POPTR_0018s05340	POPTR_0018s05340 (9)	scaffold_18:4865841-4866333(+) (9)	NA	NA	NA	AT5G07950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g11450.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.121.1.S1_s_at	A	A1TS	POPTR_0003s13370	POPTR_0003s13370 (9)	scaffold_3:13766368-13766895(-) (9)	NA	Q9FE38	Potassium transporter 3	AT4G23640.1	Potassium transporter family protein 	LOC_Os01g70940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.1210.1.A1_at	A	A1TS	POPTR_0003s12770	POPTR_0003s12770 (9)	scaffold_3:13245468-13245854(-) (9)	NA	Q55DY8	Mitoferrin	AT4G11440.1	Mitochondrial substrate carrier family protein 	LOC_Os02g44570.2	"mitochondrial carrier protein, putative, expressed"	Medtr4g149370.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1212.1.S1_at	A	A1TS	POPTR_0006s04370	POPTR_0006s04370 (11)	scaffold_6:2970260-2971819(+) (11)	NA	P74476	Peptide chain release factor 2	AT3G57190.1	"peptide chain release factor, putative "	LOC_Os05g31160.1	"peptide chain release factor 2, putative, expressed"	Medtr1g062640.1	Class I peptide chain release factor; PCRF 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
Ptp.1216.1.A1_s_at	A	A1TS	POPTR_0013s02210	POPTR_0013s02210 (11)	scaffold_13:1312163-1312505(-) (11)	NA	Q5H7P5	Mannosylglycoprotein endo-beta-mannosidase	AT1G09010.1	glycoside hydrolase family 2 protein 	LOC_Os05g32530.1	"mannosylglycoprotein endo-beta-mannosidase, putative, expressed"	Medtr1g099500.1	"Glycoside hydrolase family 2, sugar binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1217.1.S1_at	A	A1TS	POPTR_0003s17350	POPTR_0003s17350 (10)	scaffold_3:16728479-16728873(+) (10)	NA	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT2G33170.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g42700.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1218.1.A1_s_at	A	A2TS	POPTR_0006s13470	POPTR_0006s13470 (11)//POPTR_0006s13480 (11)	scaffold_6:10696154-10696976(-) (11)//scaffold_6:10704071-10704893(-) (11)	NA	Q9SF40	60S ribosomal protein L4-1	AT3G09630.1	Ribosomal protein L4/L1 family 	LOC_Os07g08330.1	"ribosomal protein L4, putative, expressed"	Medtr1g065440.1	"Ribosomal protein L4/L1e, archeabacterial like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1219.1.S1_at	A	A1TS	POPTR_0016s02570	POPTR_0016s02570 (11)	scaffold_16:1266183-1266568(-) (11)	NA	Q945B7	"Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic"	AT3G56940.1	"dicarboxylate diiron protein, putative (Crd1) "	LOC_Os01g17170.1	"magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed"	Medtr7g105140.1	Ferritin/ribonucleotide reductase-like; Ferritin-related 	NA	GO:0046872|metal ion binding	NA
Ptp.1219.2.S1_s_at	A	A2TS	POPTR_0006s02810	POPTR_0006s02810 (9)//POPTR_0016s02570 (9)	scaffold_16:1267013-1267415(-) (9)//scaffold_6:1772828-1773205(-) (9)	NA	Q945B7	"Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic"	AT3G56940.1	"dicarboxylate diiron protein, putative (Crd1) "	LOC_Os01g17170.1	"magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed"	Medtr7g105140.1	Ferritin/ribonucleotide reductase-like; Ferritin-related 	NA	GO:0046872|metal ion binding	NA
Ptp.1220.1.S1_at	A	A1TS	POPTR_0017s13070	POPTR_0017s13070 (9)	scaffold_17:13221706-13221841(-) (9)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1220.1.S1_s_at	A	A1TS	POPTR_0017s13070	POPTR_0017s13070 (11)	scaffold_17:13221871-13222094(-) (11)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1221.1.S1_at	A	A1TS	POPTR_0007s13500	POPTR_0007s13500 (11)	scaffold_7:13552520-13553230(-) (11)	NA	O23240	"D-2-hydroxyglutarate dehydrogenase, mitochondrial"	AT4G36400.2	FAD-linked oxidases family protein 	LOC_Os07g08950.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.1224.1.S1_s_at	A	A1TS	POPTR_0018s11910	POPTR_0018s11910 (11)	scaffold_18:12565212-12565360(-) (11)	NA	Q46036	Outer membrane lipoprotein blc	AT5G58070.1	temperature-induced lipocalin 	LOC_Os08g34150.1	"OsTIL-2  Temperature-induced lipocalin-2, expressed"	Medtr8g146020.1	Lipocalin; Calycin_like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1225.1.S1_at	A	A1TS	POPTR_0006s03520	POPTR_0006s03520 (11)	scaffold_6:2284672-2286675(-) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os01g16350.2	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.2	Hydroxymethylglutaryl-coenzyme A lyase active site 	NA	GO:0003824|catalytic activity	NA
Ptp.1226.1.S1_at	A	A1TS	POPTR_0014s03980	POPTR_0014s03980 (11)	scaffold_14:3165136-3165481(-) (11)	NA	Q9LN68	Probable galacturonosyltransferase-like 1	AT1G19300.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1227.1.S1_at	A	A1TS	POPTR_0009s07040	POPTR_0009s07040 (11)	scaffold_9:6681309-6682041(+) (11)	NA	Q93WX6	"Cysteine desulfurase 2, chloroplastic"	AT1G08490.1	chloroplastic NIFS-like cysteine desulfurase 	LOC_Os12g18900.1	"aminotransferase, putative, expressed"	Medtr3g105250.1	"Aminotransferase, class V; "	GO:0008152|metabolic process	NA	NA
Ptp.123.1.S1_at	A	A1TS	POPTR_0012s04000	POPTR_0012s04000 (11)	scaffold_12:3212488-3213645(-) (11)	NA	Q9M8S6	Potassium channel SKOR	AT3G02850.1	STELAR K+ outward rectifier 	LOC_Os06g14030.1	"potassium channel SKOR, putative, expressed"	Medtr5g085570.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.1231.1.S1_at	A	A1TS	POPTR_0015s07330	POPTR_0015s07330 (11)	scaffold_15:8509629-8510055(+) (11)	NA	Q9ZTP5	"Ribulose-phosphate 3-epimerase, chloroplastic"	AT5G61410.2	D-ribulose-5-phosphate-3-epimerase 	LOC_Os03g07300.1	"ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0004750|ribulose-phosphate 3-epimerase activity	NA
Ptp.1231.2.S1_s_at	A	A1TS	POPTR_0015s07330	POPTR_0015s07330 (11)	scaffold_15:8507887-8508833(+) (11)	NA	Q9ZTP5	"Ribulose-phosphate 3-epimerase, chloroplastic"	AT5G61410.2	D-ribulose-5-phosphate-3-epimerase 	LOC_Os03g07300.1	"ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0004750|ribulose-phosphate 3-epimerase activity	NA
Ptp.1234.1.S1_s_at	A	A1TS	POPTR_0019s12550	POPTR_0019s12550 (11)	scaffold_19:13605599-13606162(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G59690.1	IQ-domain 13 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1235.1.A1_s_at	A	A1TS	POPTR_0004s23530	POPTR_0004s23530 (11)	scaffold_4:22224055-22225205(+) (11)	NA	Q8BMJ2	"Leucyl-tRNA synthetase, cytoplasmic"	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os09g32650.1	"leucyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr7g006010.1	"Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.1235.2.A1_a_at	A	A1MS	POPTR_0004s23530	POPTR_0004s23530 (11)	scaffold_4:22224071-22224266(+) (11)	NA	Q8BMJ2	"Leucyl-tRNA synthetase, cytoplasmic"	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os09g32650.1	"leucyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr7g006010.1	"Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.1236.1.S1_at	A	A1TS	POPTR_0006s18890	POPTR_0006s18890 (9)	scaffold_496:4141-5948(+) (11)//scaffold_594:2028-11551(-) (11)//scaffold_6:17512444-17513043(-) (10)//scaffold_6:17592561-17602458(-) (11)//scaffold_6:17626824-17628652(-) (9)	NA	O08560	Diacylglycerol kinase zeta	AT4G30340.1	diacylglycerol kinase 7 	LOC_Os02g54650.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1237.1.A1_s_at	A	A1TS	POPTR_0012s05840	POPTR_0012s05840 (11)	scaffold_12:5661600-5661873(+) (11)	NA	Q84M92	Actin-related protein 4	AT1G18450.1	actin-related protein 4 	LOC_Os08g04280.2	"actin, putative, expressed"	Medtr5g075350.3	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.1238.1.S1_at	A	A1TS	POPTR_0009s08520	POPTR_0009s08520 (11)	scaffold_9:7775658-7777228(-) (11)	POPTR_0001s29420 (8)	P19446	"Malate dehydrogenase, glyoxysomal"	AT2G22780.1	peroxisomal NAD-malate dehydrogenase 1 	LOC_Os12g43630.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr4g121950.1	Lactate/malate dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.1239.2.S1_at	A	A1TS	POPTR_0001s12220	POPTR_0001s12220 (9)	scaffold_1:9456882-9457266(-) (9)	NA	Q8L7E3	Vacuolar-sorting receptor 7	AT1G30900.1	VACUOLAR SORTING RECEPTOR 6 	LOC_Os06g45380.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.124.1.S1_at	A	A1TS	POPTR_0014s02310	POPTR_0014s02310 (11)	scaffold_14:1964259-1964560(-) (11)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.1241.1.S1_at	A	A1TS	POPTR_0005s20770	POPTR_0005s20770 (11)	scaffold_5:19907042-19907553(+) (11)	NA	Q54M22	"2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial"	AT1G21400.1	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein 	LOC_Os12g08260.4	"dehydrogenase E1 component domain containing protein, expressed"	Medtr3g143240.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
Ptp.1243.1.S1_at	A	A1TS	POPTR_0012s09720	POPTR_0012s09720 (11)	scaffold_12:10667841-10668027(-) (11)	NA	Q08480	Adenylate kinase B	AT5G63400.1	adenylate kinase 1 	LOC_Os11g20790.1	"adenylate kinase, putative, expressed"	Medtr8g109570.1	Adenylate kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.1244.1.S1_s_at	A	A1TS	POPTR_0017s00420	POPTR_0017s00420 (11)	scaffold_17:139348-140465(+) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1246.1.A1_at	A	A1TS	POPTR_0006s06480	POPTR_0006s06480 (11)	scaffold_6:4656770-4656980(+) (11)	NA	O22845	Calmodulin-like protein 5	AT2G43290.1	Calcium-binding EF-hand family protein 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g121290.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1247.1.S1_s_at	A	A1TS	POPTR_0006s25830	POPTR_0006s25830 (11)	scaffold_6:24184327-24186020(+) (11)	NA	P46644	"Aspartate aminotransferase, chloroplastic"	AT5G11520.1	aspartate aminotransferase 3 	LOC_Os01g55540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.1250.1.S1_at	A	A1TS	POPTR_0005s04700	POPTR_0005s04700 (11)	scaffold_5:3151300-3151747(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G54610.3	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr7g140180.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1251.1.A1_s_at	A	A1TS	POPTR_0001s15510	POPTR_0001s15510 (11)	scaffold_1:12349075-12349549(+) (11)	NA	Q869R9	Myb-like protein J	AT5G47390.1	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.1252.1.S1_s_at	A	A1TS	POPTR_0004s01660	POPTR_0004s01660 (11)	scaffold_4:1002949-1003310(-) (11)	NA	Q9ZS97	"UPF0051 protein ABCI8, chloroplastic"	AT4G04770.1	ATP binding cassette protein 1 	LOC_Os01g61400.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr7g029700.1	FeS assembly protein SufB 	GO:0016226|iron-sulfur cluster assembly	GO:0005515|protein binding	NA
Ptp.1257.1.S1_at	A	A2MS	POPTR_0003s01980	POPTR_0027s00240 (11)//POPTR_0003s01980 (11)	scaffold_27:44465-44502(-) (11)//scaffold_3:1879750-1879787(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1258.1.S1_s_at	A	A1TS	POPTR_0015s07640	POPTR_0015s07640 (11)	scaffold_15:8942318-8942675(+) (11)	NA	Q02283	Homeobox-leucine zipper protein HAT5	AT3G01470.1	homeobox 1 	LOC_Os02g49700.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g113090.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.1259.1.S1_s_at	A	A1TS	POPTR_0003s05450	POPTR_0003s05450 (10)	scaffold_3:6723782-6723879(+) (10)	NA	Q94738	97 kDa heat shock protein	AT1G79930.1	heat shock protein 91 	LOC_Os01g08560.2	"DnaK family protein, putative, expressed"	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.126.1.S1_s_at	A	A1TS	POPTR_0004s11760	POPTR_0004s11760 (11)	scaffold_4:10619475-10619825(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT5G15490.1	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25690.1	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.1260.1.A1_at	A	A1TS	POPTR_0007s12060	POPTR_0007s12060 (11)	scaffold_7:12383691-12383734(+) (11)	NA	NA	NA	AT3G50830.1	cold-regulated 413-plasma membrane 2 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1260.1.A1_s_at	A	A1TS	POPTR_0007s12060	POPTR_0007s12060 (11)	scaffold_7:12382176-12383488(+) (11)	NA	NA	NA	AT3G50830.1	cold-regulated 413-plasma membrane 2 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1261.1.S1_s_at	A	A1TS	POPTR_0011s14520	POPTR_0011s14520 (9)	scaffold_11:16889915-16890238(+) (9)	NA	Q6Y2X3	DnaJ homolog subfamily C member 14	AT1G79030.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g41820.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g077040.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.1262.1.S1_s_at	A	A1TS	POPTR_0006s12740	POPTR_0006s12740 (11)	scaffold_6:9890505-9890726(+) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1264.1.S1_s_at	A	A1TS	POPTR_0008s19870	POPTR_0008s19870 (11)	scaffold_8:13712392-13712815(-) (11)	NA	Q9XIF4	Thioredoxin H7	AT1G59730.1	thioredoxin H-type 7 	LOC_Os03g58630.1	"thioredoxin, putative, expressed"	Medtr5g038930.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.1265.2.A1_s_at	A	A1TS	POPTR_0025s00500	POPTR_0025s00500 (11)	scaffold_25:211168-212613(-) (11)	NA	Q93VD3	CBL-interacting serine/threonine-protein kinase 23	AT1G30270.1	CBL-interacting protein kinase 23 	LOC_Os07g05620.2	"CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g056750.1	Protein kinase; NAF; 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1266.1.S1_a_at	A	A1TS	POPTR_0010s21370	POPTR_0010s21370 (11)	scaffold_10:18684956-18685158(+) (11)	NA	Q42540	Ubiquitin-conjugating enzyme E2 7	AT5G59300.1	ubiquitin carrier protein 7 	LOC_Os05g38550.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g078810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.1267.1.S1_x_at	A	A1TS	POPTR_0013s11710	POPTR_0013s11710 (11)	scaffold_13:12373902-12375223(-) (11)	NA	NA	NA	AT1G71950.1	"Proteinase inhibitor, propeptide "	LOC_Os05g35740.1	"subtilisin N-terminal Region family protein, expressed"	Medtr1g068620.1	"Proteinase inhibitor, propeptide "	GO:0043086|negative regulation of catalytic activity	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.127.1.S1_s_at	A	A1TS	POPTR_0013s03860	POPTR_0013s03860 (11)	scaffold_13:2517005-2517547(-) (11)	NA	P32294	Auxin-induced protein 22B	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os12g40900.1	"OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed"	AC233668_17.1	AUX/IAA protein AC233668.2 65033-67329 F EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1271.2.S1_a_at	A	A1TS	POPTR_0003s01810	POPTR_0003s01810 (11)	scaffold_3:1678577-1679286(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os07g43050.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1271.3.S1_a_at	A	A1TS	POPTR_0003s01810	POPTR_0003s01810 (11)	scaffold_3:1679909-1680694(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os07g43050.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1273.1.S1_at	A	A1TS	POPTR_0008s07370	POPTR_0008s07370 (11)	scaffold_8:4520962-4521610(-) (11)	NA	Q9SIY8	Laccase-5	AT2G40370.1	laccase 5 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr3g097050.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1274.1.S1_s_at	A	A1TS	POPTR_0015s04570	POPTR_0015s04570 (11)	scaffold_15:4745707-4745901(-) (11)	NA	Q5SMQ9	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.1275.2.S1_s_at	A	A1TS	POPTR_0018s09030	POPTR_0018s09030 (11)	scaffold_18:9905562-9905599(-) (11)	NA	Q9XEX2	Peroxiredoxin-2B	AT1G65980.1	thioredoxin-dependent peroxidase 1 	LOC_Os01g48420.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.1280.1.S1_at	A	A1TS	POPTR_0005s26900	POPTR_0005s26900 (11)	scaffold_5:24745236-24745638(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1280.1.S1_s_at	A	A1TS	POPTR_0005s26900	POPTR_0005s26900 (11)	scaffold_5:24745310-24745615(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1281.1.A1_at	A	A1TS	POPTR_0010s02280	POPTR_0010s02280 (11)	scaffold_10:2622536-2623346(-) (11)	NA	Q9JK24	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	AT5G18580.1	tonneau 2 (TON2) 	LOC_Os05g05710.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed"	Medtr8g139320.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1286.1.A1_at	A	A1TS	POPTR_0005s19180	POPTR_0005s19180 (10)	scaffold_5:17794427-17794774(-) (10)	NA	NA	NA	AT1G43130.1	like COV 2 	LOC_Os01g64780.1	"COV1, putative, expressed"	Medtr3g144480.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1286.3.S1_s_at	A	A1TS	POPTR_0006s18960	POPTR_0006s18960 (11)	scaffold_6:17747105-17747543(+) (11)	POPTR_0018s10630 (6)	P53533	Chaperone protein ClpB 1	AT5G57710.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g15230.1	"heat shock protein-related, putative, expressed"	Medtr8g127930.1	"ATP binding, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1287.1.S1_at	A	A1TS	POPTR_0012s11850	POPTR_0012s11850 (9)	scaffold_12:12219986-12220267(+) (9)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr5g084520.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1287.2.S1_s_at	A	A1TS	POPTR_0015s12470	POPTR_0015s12470 (11)	scaffold_15:12709571-12710536(+) (11)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1288.1.S1_at	A	A1TS	POPTR_0010s01850	POPTR_0010s01850 (11)	scaffold_10:2025029-2026069(-) (11)	NA	A3KPF2	Probable histone-arginine methyltransferase CARM1B	AT5G49020.1	protein arginine methyltransferase 4A 	LOC_Os07g47500.1	"histone-arginine methyltransferase CARM1, putative, expressed"	Medtr8g138750.1	Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1290.1.A1_at	A	A1TS	POPTR_0004s08450	POPTR_0004s08450 (11)	scaffold_4:6994766-6995291(+) (11)	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os03g12250.1	"atypical receptor-like kinase MARK, putative, expressed"	Medtr5g085840.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1294.1.A1_at	A	A1TS	POPTR_0010s16620	POPTR_0010s16620 (9)	scaffold_10:15519501-15519985(-) (9)	NA	Q6DKC0	Erlin-2-B	AT2G03510.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os03g30790.1	"erlin-2 precursor, putative, expressed"	Medtr4g115350.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1297.1.S1_at	A	A1TS	POPTR_0014s16320	POPTR_0014s16320 (11)	scaffold_14:12413370-12413748(-) (11)	NA	NA	NA	AT3G07760.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os12g32992.1	expressed protein	Medtr5g104940.1	Sterile alpha motif homology 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1297.2.S1_a_at	A	A1TS	POPTR_0014s16320	POPTR_0014s16320 (11)	scaffold_14:12415122-12417038(-) (11)	NA	NA	NA	AT3G07760.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os12g32992.1	expressed protein	Medtr5g104940.1	Sterile alpha motif homology 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1299.1.S1_at	A	A1TS	POPTR_0012s07020	POPTR_0012s07020 (11)	scaffold_12:7671401-7671950(-) (11)	NA	Q9LF80	Putative glycosyltransferase 3	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g32750.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
Ptp.13.1.S1_at	A	A1TS	POPTR_0015s00960	POPTR_0015s00960 (11)	scaffold_15:559694-560083(+) (11)	NA	Q84WW2	"Probable 6-phosphogluconolactonase 5, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1302.1.S1_at	A	A1TS	POPTR_0008s03860	POPTR_0008s03860 (11)	scaffold_8:2096849-2098261(+) (11)	NA	Q9GMB0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	AT2G01720.1	Ribophorin I 	LOC_Os05g23600.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed"	Medtr1g120720.1	Ribophorin I 	GO:0006486|protein amino acid glycosylation	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
Ptp.1303.1.S1_at	A	A1TS	POPTR_0016s06690	POPTR_0016s06690 (9)	scaffold_16:4508133-4508591(-) (9)	NA	NA	NA	AT2G35880.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os11g36340.1	"lymphoid organ expressed yellow head virus receptor protein, putative, expressed"	Medtr3g137120.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1305.1.S1_s_at	A	A1TS	POPTR_0008s13600	POPTR_0008s13600 (11)	scaffold_8:8959543-8959973(-) (11)	NA	P93711	Caffeoyl-CoA O-methyltransferase	AT1G67980.1	caffeoyl-CoA 3-O-methyltransferase 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
Ptp.1306.1.A1_at	A	A1TS	POPTR_0005s12850	POPTR_0005s12850 (11)	scaffold_5:9657952-9658178(+) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
Ptp.1307.1.S1_at	A	A1TS	POPTR_0007s01160	POPTR_0007s01160 (11)	scaffold_7:623208-624713(+) (11)	NA	O49453	Uncharacterized protein At4g28440	AT4G28440.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1308.1.S1_at	A	A1TS	POPTR_0007s12250	POPTR_0007s12250 (11)	scaffold_7:12570299-12570675(-) (11)	NA	Q8L3R2	Probable calcium-binding protein CML41	AT3G50770.1	calmodulin-like 41 	LOC_Os01g72530.1	"OsCML31 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g093890.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1309.1.A1_at	A	A1TS	POPTR_0014s13810	POPTR_0014s13810 (9)	scaffold_14:10098511-10100111(-) (9)	NA	O96622	Actin-related protein 2/3 complex subunit 1	AT2G30910.3	actin-related protein C1A 	LOC_Os02g57220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g064430.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1311.1.S1_s_at	A	A1TS	POPTR_0018s06710	POPTR_0018s06710 (10)	scaffold_18:6759232-6760060(+) (10)	NA	P07314	Gamma-glutamyltranspeptidase 1	AT4G29210.1	gamma-glutamyl transpeptidase 4 	LOC_Os01g05810.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr6g093830.1	Gamma-glutamyltranspeptidase 	NA	GO:0003840|gamma-glutamyltransferase activity	NA
Ptp.1312.1.S1_s_at	A	A1TS	POPTR_0009s01200	POPTR_0009s01200 (11)	scaffold_9:1381640-1381995(+) (11)	NA	Q9LFP3	Probable glycosyltransferase At5g11130	AT2G28110.1	Exostosin family protein 	LOC_Os03g01760.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.1314.1.S1_s_at	A	A1TS	POPTR_0010s15840	POPTR_0010s15840 (11)	scaffold_10:14950129-14950612(+) (11)	NA	Q96PB1	CAS1 domain-containing protein 1	AT3G06550.3	O-acetyltransferase family protein 	LOC_Os03g19970.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1315.1.S1_at	A	A1TS	POPTR_0010s19960	POPTR_0010s19960 (11)	scaffold_10:17713960-17714926(+) (11)	NA	O24412	Probable 26S proteasome non-ATPase regulatory subunit 7	AT3G11270.1	Mov34/MPN/PAD-1 family protein 	LOC_Os04g56646.1	"MEE34, putative, expressed"	Medtr3g093230.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1316.1.A1_s_at	A	A1TS	POPTR_0006s23820	POPTR_0006s23820 (11)	scaffold_6:22565455-22566164(+) (11)	NA	Q5JVF3	PCI domain-containing protein 2	AT2G19560.1	proteasome family protein 	LOC_Os09g21760.1	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1317.1.S1_s_at	A	A2TS	POPTR_0002s12570	POPTR_0002s12570 (11)//POPTR_0014s02550 (11)	scaffold_14:2130568-2131846(+) (11)//scaffold_2:9356569-9358103(+) (11)	NA	P42731	Polyadenylate-binding protein 2	AT1G49760.2	poly(A) binding protein 8 	LOC_Os08g22354.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
Ptp.1318.2.S1_s_at	A	A1TS	POPTR_0008s19950	POPTR_0008s19950 (11)	scaffold_8:13780882-13781133(-) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT3G06035.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1319.1.A1_at	A	A1TS	POPTR_0016s07500	POPTR_0016s07500 (9)	scaffold_16:5382285-5382684(+) (9)	NA	Q851L5	IAA-amino acid hydrolase ILR1-like 3	AT3G02875.1	Peptidase M20/M25/M40 family protein 	LOC_Os03g62060.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.132.1.S1_at	A	A1TS	POPTR_0005s02780	POPTR_0005s02780 (11)	scaffold_5:1783839-1784419(-) (11)	NA	Q8W5S1	Cyclin-H1-1	AT5G27620.1	cyclin H;1 	LOC_Os03g52750.2	"cyclin, putative, expressed"	Medtr1g099610.1	Cyclin-like; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1321.1.A1_s_at	A	A2TS	POPTR_0009s07860	POPTR_0009s07860 (11)//POPTR_1135s00210 (11)	scaffold_1135:6693-6883(-) (11)//scaffold_9:7293300-7293490(-) (11)	NA	Q2N2K0	"Probable phytol kinase 3, chloroplastic"	AT5G58560.1	Phosphatidate cytidylyltransferase family protein 	LOC_Os01g61560.1	"phosphatidate cytidylyltransferase, putative, expressed"	NA	NA	NA	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	GO:0016020|membrane
Ptp.1322.1.S1_at	A	A1TS	POPTR_0006s21070	POPTR_0006s21070 (11)	scaffold_6:20172384-20173320(-) (11)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1323.1.S1_at	A	A1TS	POPTR_0010s18360	POPTR_0010s18360 (9)	scaffold_10:16626181-16627112(+) (9)	NA	P50218	Isocitrate dehydrogenase [NADP]	AT1G65930.1	cytosolic NADP+-dependent isocitrate dehydrogenase 	LOC_Os05g49760.1	"dehydrogenase, putative, expressed"	Medtr2g080710.1	"Isocitrate dehydrogenase NADP-dependent, plant "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.1325.1.S1_s_at	A	A1TS	POPTR_0019s10170	POPTR_0019s10170 (11)	scaffold_19:11757479-11759082(+) (11)	POPTR_0013s10470 (6)	Q8BVQ5	Protein phosphatase methylesterase 1	AT4G10050.1	esterase/lipase/thioesterase family protein 	LOC_Os04g36620.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr5g008510.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1326.1.S1_s_at	A	A1TS	POPTR_0011s09050	POPTR_0011s09050 (11)	scaffold_11:11126560-11127041(+) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1328.1.S1_at	A	A1MS	POPTR_0025s00340	POPTR_0025s00340 (9)	scaffold_25:112321-112842(-) (9)	NA	Q6AZB8	Putative nuclease HARBI1	AT1G72270.1	CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os04g55130.1	expressed protein	Medtr8g122260.1	"AGAP006957-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1329.1.S1_s_at	A	A1TS	POPTR_0003s14550	POPTR_0003s14550 (11)	scaffold_3:14604041-14604850(-) (11)	NA	Q6N075	Major facilitator superfamily domain-containing protein 5	AT1G64650.1	Major facilitator superfamily protein 	LOC_Os03g02380.1	"major facilitator superfamily domain-containing protein 5, putative, expressed"	Medtr3g123410.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.133.1.A1_at	A	A1TS	POPTR_0003s09540	POPTR_0003s09540 (11)	scaffold_3:10856170-10858269(+) (11)	NA	Q9ZWQ7	Defender against cell death 1	AT1G32210.1	Defender against death (DAD family) protein 	LOC_Os04g32550.1	"defender against cell death 1, putative, expressed"	Medtr3g026150.1	Defender against death DAD protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.133.1.A1_s_at	A	A2TS	POPTR_0001s01950	POPTR_0003s09540 (11)//POPTR_0001s01950 (11)	scaffold_1:1427427-1429329(-) (11)//scaffold_3:10856382-10858388(+) (11)	NA	Q9ZWQ7	Defender against cell death 1	AT2G35520.1	Defender against death (DAD family) protein 	LOC_Os04g32550.1	"defender against cell death 1, putative, expressed"	Medtr3g026150.1	Defender against death DAD protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1330.1.S1_at	A	A1TS	POPTR_0019s15220	POPTR_0019s15220 (9)	scaffold_19:15782263-15782805(-) (9)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
Ptp.1331.1.A1_at	A	A1TS	POPTR_0019s04580	POPTR_0019s04580 (9)	scaffold_19:4773724-4775183(+) (9)	NA	NA	NA	AT1G08530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g24240.1	expressed protein	Medtr4g107840.1	"T27G7.21, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1336.1.S1_s_at	A	A1TS	POPTR_0005s07190	POPTR_0005s07190 (11)	scaffold_5:4836097-4838017(+) (11)	NA	Q39017	Diacylglycerol kinase 1	AT5G63770.1	diacylglycerol kinase 2 	LOC_Os12g12260.1	"diacylglycerol kinase 1, putative, expressed"	Medtr4g144130.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region; Protein kinase C, phorbol ester/diacylglycerol binding "	GO:0023033|signaling pathway||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1338.1.A1_at	A	A1TS	POPTR_0006s11690	POPTR_0006s11690 (11)	scaffold_6:8899450-8899898(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G03730.1	Protein kinase superfamily protein 	LOC_Os02g32610.3	"protein kinase domain containing protein, expressed"	Medtr3g149670.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1339.1.S1_s_at	A	A1TS	POPTR_0006s10530	POPTR_0006s10530 (11)	scaffold_6:7890728-7891199(-) (11)	NA	O80915	PRA1 family protein B4	AT2G38360.1	prenylated RAB acceptor 1.B4 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.134.2.S1_a_at	A	A1TS	POPTR_0005s10480	POPTR_0005s10480 (11)	scaffold_5:7532363-7533383(+) (11)	NA	O81788	WUSCHEL-related homeobox 13	AT4G35550.1	WUSCHEL related homeobox 13 	LOC_Os01g60270.2	"homeobox domain containing protein, expressed"	Medtr7g025190.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.1340.1.A1_at	A	A1TS	POPTR_0016s14550	POPTR_0016s14550 (10)	scaffold_16:13741555-13742049(-) (10)	NA	Q9LZV3	"Mannan endo-1,4-beta-mannosidase 6"	AT5G01930.1	Glycosyl hydrolase superfamily protein 	LOC_Os05g25480.1	"OsMan06 - Endo-Beta-Mannanase, expressed"	Medtr8g005200.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1342.1.A1_at	A	A1TS	POPTR_0010s06250	POPTR_0010s06250 (11)	scaffold_10:7662463-7663227(-) (11)	NA	NA	NA	AT1G24460.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1); Has 181008 Blast hits to 85359 proteins in 3551 species: Archae - 3290; Bacteria - 48304; Metazoa - 70793; Fungi - 13943; Plants - 10118; Viruses - 785; Other Eukaryotes - 33775 (source: NCBI BLink). 	LOC_Os02g38480.1	expressed protein	Medtr3g102910.1	"myosin-related, related "	GO:0016032|viral reproduction	NA	GO:0016020|membrane
Ptp.1344.1.A1_s_at	A	A1MS	POPTR_0001s29320	POPTR_0001s29320 (11)	scaffold_1:28037403-28037687(+) (11)	NA	Q9C5C8	"Peptide methionine sulfoxide reductase B2, chloroplastic"	AT4G21860.2	methionine sulfoxide reductase B 2 	LOC_Os05g33510.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr4g121860.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
Ptp.1346.1.A1_at	A	A1TS	POPTR_0008s02200	POPTR_0008s02200 (11)	scaffold_8:1054237-1054622(+) (11)	NA	Q99JF5	Diphosphomevalonate decarboxylase	AT3G54250.1	GHMP kinase family protein 	LOC_Os02g01920.1	"GHMP kinases ATP-binding protein, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.1348.1.S1_s_at	A	A1TS	POPTR_0011s16730	POPTR_0011s16730 (11)	scaffold_11:18510200-18511431(+) (11)	NA	Q5BQN5	WPP domain-associated protein (Fragment)	AT2G34730.1	myosin heavy chain-related 	LOC_Os09g04810.1	"myosin heavy chain-related, putative, expressed"	Medtr2g129750.1	"WPP domain associated protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1350.1.S1_at	A	A1TS	POPTR_0003s10680	POPTR_0003s10680 (10)	scaffold_3:11597128-11597636(+) (10)	NA	Q9FII5	Leucine-rich repeat receptor-like protein kinase TDR	AT5G61480.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g05290.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g117050.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1351.1.S1_a_at	A	A1TS	POPTR_0010s21340	POPTR_0010s21340 (11)	scaffold_10:18665561-18665851(+) (11)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1351.1.S1_at	A	A1TS	POPTR_0010s21340	POPTR_0010s21340 (11)	scaffold_10:18665849-18666043(+) (11)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1351.2.S1_at	A	A1TS	POPTR_0010s21340	POPTR_0010s21340 (11)	scaffold_10:18665876-18666352(+) (11)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1353.1.A1_at	A	A1TS	POPTR_0007s14730	POPTR_0007s14730 (9)	scaffold_7:14491959-14492320(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr8g102000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1355.1.S1_at	A	A1TS	POPTR_0003s13240	POPTR_0003s13240 (10)	scaffold_3:13636884-13637095(+) (10)	NA	NA	NA	AT1G63980.1	D111/G-patch domain-containing protein 	LOC_Os03g03390.1	"G-patch domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.1356.1.S1_s_at	A	A1TS	POPTR_0005s02610	POPTR_0005s02610 (11)	scaffold_5:1659263-1659484(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1359.1.A1_at	A	A1TS	POPTR_0002s19970	POPTR_0002s19970 (11)	scaffold_2:15903304-15903779(+) (11)	NA	P52424	"Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial"	AT3G55010.2	"phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) "	LOC_Os03g61600.1	"phosphoribosylformylglycinamidine synthase, putative, expressed"	Medtr4g143000.1	"Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "	NA	GO:0003824|catalytic activity	NA
Ptp.1359.2.S1_at	A	A1TS	POPTR_0002s19970	POPTR_0002s19970 (11)	scaffold_2:15900659-15901485(+) (11)	NA	P52424	"Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial"	AT3G55010.2	"phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) "	LOC_Os03g61600.1	"phosphoribosylformylglycinamidine synthase, putative, expressed"	Medtr4g143000.1	"Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "	NA	GO:0003824|catalytic activity	NA
Ptp.136.1.S1_at	A	A1TS	POPTR_0002s14540	POPTR_0002s14540 (11)	scaffold_2:10804407-10805320(-) (11)	NA	Q8VYK7	Autophagy-related protein 8f	AT4G16520.2	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1360.1.S1_s_at	A	A1TS	POPTR_0010s16070	POPTR_0010s16070 (11)	scaffold_10:15124704-15124776(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1361.2.A1_at	A	A1TA	POPTR_0008s16160	POPTR_0008s16160 (11)	scaffold_8:10798312-10798711(+) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1361.3.S1_a_at	A	A1TS	POPTR_0008s16160	POPTR_0008s16160 (11)	scaffold_8:10798578-10800676(-) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1361.3.S1_s_at	A	A1TS	POPTR_0008s16160	POPTR_0008s16160 (11)	scaffold_10:9626130-9626222(+) (11)//scaffold_8:10798603-10798695(-) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1365.1.S1_at	A	A1TS	POPTR_0002s12510	POPTR_0002s12510 (9)	scaffold_2:9298791-9299172(+) (9)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.1366.1.A1_s_at	A	A1TS	POPTR_0009s01320	POPTR_0009s01320 (10)	scaffold_9:1589821-1590278(+) (10)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1366.2.S1_s_at	A	A1TS	POPTR_0009s01320	POPTR_0009s01320 (11)	scaffold_9:1585658-1585802(+) (11)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1366.3.S1_at	A	A1MS	POPTR_0009s01320	POPTR_0009s01320 (9)	scaffold_9:1585804-1585868(+) (9)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1367.1.A1_at	A	A1TS	POPTR_0004s14060	POPTR_0004s14060 (11)	scaffold_4:14531150-14531544(+) (11)	NA	NA	NA	AT4G18400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g39594.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1367.1.A1_s_at	A	A1TS	POPTR_0004s14060	POPTR_0004s14060 (11)	scaffold_4:14531356-14531761(+) (11)	NA	NA	NA	AT4G18400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g39594.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1368.1.A1_a_at	A	A1TS	POPTR_0003s15670	POPTR_0003s15670 (11)	scaffold_3:15431928-15432259(+) (11)	NA	Q9STE8	"Protein TOC75-3, chloroplastic"	AT3G46740.1	translocon at the outer envelope membrane of chloroplasts 75-III 	LOC_Os03g16440.1	"outer membrane protein, OMP85 family, putative, expressed"	Medtr4g084320.1	"Bacterial surface antigen (D15); Chloroplast envelope protein translocase, IAP75 "	NA	NA	GO:0019867|outer membrane
Ptp.137.1.S1_s_at	A	A1TS	POPTR_0002s18750	POPTR_0002s18750 (11)	scaffold_2:14618181-14618799(+) (11)	NA	Q9M1R4	Auxin-responsive protein IAA30	AT3G62100.1	indole-3-acetic acid inducible 30 	LOC_Os02g49160.1	"OsIAA8 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g133620.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1370.1.S1_at	A	A1TS	POPTR_0007s10940	POPTR_0007s10940 (9)	scaffold_7:11137959-11138036(-) (9)	NA	NA	NA	AT5G67070.1	ralf-like 34 	NA	NA	Medtr5g017130.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1370.1.S1_s_at	A	A1TS	POPTR_0007s10940	POPTR_0007s10940 (11)	scaffold_7:11137584-11137851(-) (11)	NA	NA	NA	AT5G67070.1	ralf-like 34 	NA	NA	Medtr5g017130.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1373.1.S1_s_at	A	A1TS	POPTR_0010s13760	POPTR_0010s13760 (11)	scaffold_10:13511235-13511774(+) (11)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	AC233660_2.1	Armadillo-like helical AC233660.2 13161-17702 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1376.1.S1_at	A	A1TS	POPTR_0016s08580	POPTR_0016s08580 (11)	scaffold_16:6399581-6399989(+) (11)	NA	Q1PER6	"L-ascorbate peroxidase 2, cytosolic"	AT3G09640.2	ascorbate peroxidase 2 	LOC_Os07g49400.2	"OsAPx2 - Cytosolic Ascorbate Peroxidase encoding gene 4,5,6,8, expressed"	Medtr4g080090.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.1377.1.S1_at	A	A1TS	POPTR_0002s08260	POPTR_0002s08260 (11)	scaffold_2:5749835-5751418(+) (11)	NA	Q43116	Protein disulfide-isomerase	AT1G77510.1	PDI-like 1-2 	LOC_Os11g09280.2	"OsPDIL1-1  protein disulfide isomerase PDIL1-1, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.1377.1.S1_x_at	A	A1TS	POPTR_0002s08260	POPTR_0002s08260 (11)	scaffold_2:5749835-5751418(+) (11)	NA	Q43116	Protein disulfide-isomerase	AT1G77510.1	PDI-like 1-2 	LOC_Os11g09280.2	"OsPDIL1-1  protein disulfide isomerase PDIL1-1, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.1379.1.S1_a_at	A	A1TS	POPTR_0011s15080	POPTR_0011s15080 (11)	scaffold_11:17270057-17270091(+) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1379.1.S1_at	A	A1TS	POPTR_0011s15080	POPTR_0011s15080 (11)	scaffold_11:17270031-17270268(+) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1379.2.S1_s_at	A	A2TS	POPTR_0011s15080	POPTR_0011s15170 (11)//POPTR_0011s15080 (11)	scaffold_11:17269671-17269765(+) (11)//scaffold_11:17310940-17311034(-) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.138.1.S1_s_at	A	A1TS	POPTR_0002s10880	POPTR_0002s10880 (11)	scaffold_2:7922806-7924371(-) (11)	NA	Q38827	Auxin-responsive protein IAA9	AT5G65670.2	indole-3-acetic acid inducible 9 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g078700.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1380.1.S1_at	A	A1TS	POPTR_0010s26060	POPTR_0010s26060 (11)	scaffold_10:21434328-21434558(-) (11)	NA	NA	NA	AT1G16790.1	ribosomal protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1381.1.S1_s_at	A	A1MS	POPTR_0002s12350	POPTR_0002s12350 (11)	scaffold_2:9167347-9167814(+) (11)	NA	Q9M7N6	MFP1 attachment factor 1	AT1G47200.1	WPP domain protein 2 	LOC_Os03g11060.1	"MFP1 attachment factor 1, putative, expressed"	Medtr1g023740.1	"MFP1 attachment factor 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1383.1.A1_s_at	A	A1TS	POPTR_0002s03540	POPTR_0002s03540 (11)	scaffold_2:2200542-2200847(-) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1385.1.S1_s_at	A	A1TS	POPTR_0004s16260	POPTR_0004s16260 (9)	scaffold_4:16684121-16684153(+) (9)	NA	Q03878	Glycine-rich RNA-binding protein	AT2G21660.2	"cold, circadian rhythm, and rna binding 2 "	LOC_Os12g43600.1	"RNA recognition motif containing protein, expressed"	Medtr4g095740.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.1386.1.A1_at	A	A1TS	POPTR_0005s10980	POPTR_0005s10980 (11)	scaffold_5:7891072-7892235(+) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G66060.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr5g022950.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1387.1.S1_s_at	A	A1TS	POPTR_0006s20640	POPTR_0006s20640 (11)	scaffold_6:19662907-19663100(+) (11)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.139.1.S1_at	A	A1TS	POPTR_0016s09090	POPTR_0016s09090 (11)	scaffold_16:6991769-6991940(+) (11)	NA	P43287	Aquaporin PIP2-2	AT2G37170.1	plasma membrane intrinsic protein 2 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.1390.1.S1_at	A	A1TS	POPTR_0001s34470	POPTR_0001s34470 (11)	scaffold_1:32588431-32588496(-) (11)	NA	Q940S5	Coatomer subunit zeta-1	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.1390.1.S1_s_at	A	A1TS	POPTR_0001s34470	POPTR_0001s34470 (11)	scaffold_1:32588572-32589561(-) (11)	NA	Q940S5	Coatomer subunit zeta-1	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.1391.1.S1_s_at	A	A1TS	POPTR_0016s05200	POPTR_0016s05200 (11)	scaffold_16:3162359-3162903(+) (11)	NA	NA	NA	AT2G42320.2	nucleolar protein gar2-related 	LOC_Os09g31230.2	expressed protein	Medtr7g111110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1392.1.S1_s_at	A	A1TS	POPTR_0004s16450	POPTR_0004s16450 (11)	scaffold_4:16910159-16910193(-) (11)	NA	P46301	40S ribosomal protein S25	AT4G39200.1	Ribosomal protein S25 family protein 	LOC_Os08g44480.1	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1393.1.S1_at	A	A1TS	POPTR_0001s30780	POPTR_0001s30780 (9)	scaffold_1:29241427-29244334(-) (9)	NA	NA	NA	AT2G15290.1	translocon at inner membrane of chloroplasts 21 	LOC_Os06g43130.1	"tic21, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1393.2.S1_s_at	A	A1TS	POPTR_0009s09920	POPTR_0009s09920 (11)	scaffold_9:8677733-8677804(-) (11)	NA	NA	NA	AT2G15290.1	translocon at inner membrane of chloroplasts 21 	LOC_Os06g43130.1	"tic21, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1397.1.S1_at	A	A1TS	POPTR_0009s13270	POPTR_0009s13270 (11)	scaffold_9:10611693-10612089(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT4G38740.1	rotamase CYP 1 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.1397.1.S1_s_at	A	A1TS	POPTR_0009s13270	POPTR_0009s13270 (11)	scaffold_9:10611705-10612108(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT4G38740.1	rotamase CYP 1 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.1398.1.S1_at	A	A1TS	POPTR_0010s21100	POPTR_0010s21100 (11)	scaffold_10:18510798-18511796(-) (11)	NA	P48495	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.1398.1.S1_s_at	A	A2TS	POPTR_0008s05640	POPTR_0010s21100 (11)//POPTR_0008s05640 (11)	scaffold_10:18511100-18512958(-) (11)//scaffold_8:3276949-3278938(+) (11)	NA	P48491	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.140.1.S1_at	A	A1TS	POPTR_0013s05350	POPTR_0013s05350 (11)	scaffold_13:3826902-3830030(+) (11)	NA	O49044	Superoxide dismutase [Cu-Zn] 2	AT5G18100.1	copper/zinc superoxide dismutase 3 	LOC_Os03g11960.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr6g031060.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
Ptp.1400.1.S1_s_at	A	A1TS	POPTR_0010s16030	POPTR_0010s16030 (11)	scaffold_10:15101564-15101829(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1401.1.S1_s_at	A	A1TS	POPTR_0007s00470	POPTR_0007s00470 (11)	scaffold_7:177692-178180(-) (11)	NA	Q8LAC4	Probable uridine nucleosidase 2	AT1G05620.1	uridine-ribohydrolase  2 	LOC_Os03g31170.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr1g047060.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1403.1.A1_a_at	A	A1TS	POPTR_0001s35770	POPTR_0001s35770 (11)	scaffold_1:34118029-34118385(+) (11)	NA	Q6BSS5	Pre-rRNA-processing protein ESF2	AT3G56510.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g46760.1	"RNA recognition motif containing protein, putative, expressed"	Medtr6g022740.1	"Activator of basal transcription 1, putative "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1404.1.S1_at	A	A1TS	POPTR_0025s00670	POPTR_0025s00670 (11)	scaffold_25:336886-338172(-) (11)	NA	Q5DTI8	Extended synaptotagmin-3	AT1G05500.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os04g55220.1	"C2 domain containing protein, expressed"	Medtr8g121700.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1405.1.S1_at	A	A1TS	POPTR_0014s12320	POPTR_0014s12320 (11)	scaffold_14:9104849-9105555(+) (11)	NA	Q8LB72	Blue-light photoreceptor PHR2	AT2G47590.1	photolyase/blue-light receptor 2 	LOC_Os03g22330.1	"blue-light photoreceptor PHR2, putative, expressed"	Medtr1g108320.1	"DNA photolyase, FAD- binding N-terminal "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
Ptp.1408.1.S1_s_at	A	A1TS	POPTR_0003s17700	POPTR_0003s17700 (11)	scaffold_3:17009454-17009566(+) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1408.2.S1_at	A	A1TS	POPTR_0003s17700	POPTR_0003s17700 (10)	scaffold_3:17003939-17009668(+) (10)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1409.2.S1_at	A	A1MS	POPTR_0001s30820	POPTR_0001s30820 (11)	scaffold_1:29268340-29269199(+) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
Ptp.1411.1.S1_at	A	A1TS	POPTR_0016s13210	POPTR_0016s13210 (11)	scaffold_16:12453319-12453382(+) (11)	NA	Q8VYK6	40S ribosomal protein S4-3	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	GO:0003723|RNA binding	NA
Ptp.1411.1.S1_x_at	A	A1TS	POPTR_0016s13210	POPTR_0016s13210 (11)	scaffold_16:12453264-12453382(+) (11)	NA	Q8VYK6	40S ribosomal protein S4-3	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	GO:0003723|RNA binding	NA
Ptp.1412.1.A1_at	A	A1TA	POPTR_0015s13280	POPTR_0015s13280 (10)	scaffold_15:13302959-13304784(+) (11)	NA	NA	NA	AT3G22942.1	G-protein gamma subunit 2 	LOC_Os02g04520.1	"AGG2, putative, expressed"	Medtr1g083530.1	"AGG2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1413.1.A1_at	A	A1TS	POPTR_0019s11320	POPTR_0019s11320 (11)	scaffold_19:12643025-12643392(-) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT1G71940.1	SNARE associated Golgi protein family 	LOC_Os03g49700.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1415.1.S1_at	A	A1TS	POPTR_0011s06980	POPTR_0011s06980 (11)	scaffold_11:7710792-7711171(-) (11)	NA	Q9FK68	Ras-related protein RABA1c	AT5G45750.1	RAB GTPase homolog A1C 	LOC_Os06g35814.1	"ras-related protein, putative, expressed"	Medtr2g091780.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1416.1.A1_s_at	A	A1TS	POPTR_0002s24960	POPTR_0002s24960 (11)	scaffold_1716:141-694(+) (9)//scaffold_2:22154781-22157152(+) (11)	NA	Q38936	FK506-binding protein 2-2	AT5G48580.1	FK506- and rapamycin-binding protein 15 kD-2 	LOC_Os01g68710.2	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr8g012730.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.1419.2.S1_s_at	A	A1TS	POPTR_0010s13520	POPTR_0010s13520 (11)	scaffold_10:13350736-13351683(+) (11)	NA	P51105	Dihydroflavonol-4-reductase	AT1G68540.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g03670.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g067120.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1420.1.S1_at	A	A1TS	POPTR_0017s03020	POPTR_0017s03020 (10)	scaffold_17:2188013-2188271(-) (10)	NA	NA	NA	AT3G03341.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1422.1.S1_s_at	A	A1TS	POPTR_0001s22110	POPTR_0001s22110 (11)	scaffold_1:20743817-20743960(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G22850.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1423.1.A1_at	A	A1TS	POPTR_0018s07650	POPTR_0018s07650 (11)	scaffold_18:8252940-8253265(-) (11)	NA	Q40468	Eukaryotic initiation factor 4A-15	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os02g05330.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1424.1.S1_s_at	A	A1TS	POPTR_0001s35630	POPTR_0001s35630 (11)	scaffold_1:33967140-33967265(-) (11)	NA	P51419	60S ribosomal protein L27-3	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os10g41470.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1425.2.S1_s_at	A	A1TS	POPTR_0006s27030	POPTR_0006s27030 (11)	scaffold_6:25054912-25055628(-) (11)	NA	Q9SUI5	"Photosystem I reaction center subunit psaK, chloroplastic"	AT1G30380.1	photosystem I subunit K 	LOC_Os07g05480.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
Ptp.1429.1.S1_s_at	A	A1TS	POPTR_0009s16030	POPTR_0009s16030 (11)	scaffold_9:12276902-12277012(+) (11)	NA	O49884	60S ribosomal protein L30	AT1G36240.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.3	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1433.1.S1_at	A	A1TS	POPTR_0001s47020	POPTR_0001s47020 (11)	scaffold_1:47351725-47351779(+) (11)	NA	P36181	Heat shock cognate protein 80	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
Ptp.1433.1.S1_s_at	A	A1TS	POPTR_0001s47020	POPTR_0001s47020 (11)	scaffold_1:47351375-47351817(+) (11)	NA	P36181	Heat shock cognate protein 80	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
Ptp.1435.1.S1_at	A	A1TS	POPTR_0001s06710	POPTR_0001s06710 (11)	scaffold_1:5152292-5154159(-) (11)	NA	Q02366	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	AT3G12260.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os07g44650.1	"LYR motif containing protein, putative, expressed"	Medtr8g043640.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1435.1.S1_x_at	A	A1TS	POPTR_0001s06710	POPTR_0001s06710 (11)	scaffold_1:5151991-5154136(-) (11)	NA	Q02366	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	AT3G12260.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os07g44650.1	"LYR motif containing protein, putative, expressed"	Medtr8g043640.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1439.1.S1_x_at	A	A1TS	POPTR_0019s08760	POPTR_0019s08760 (11)	scaffold_19:10296019-10298078(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g48244.1	"ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1440.1.A1_s_at	A	A1TS	POPTR_0007s01700	POPTR_0007s01700 (11)	scaffold_7:989222-990292(+) (11)	NA	O24495	"Hydroxyacylglutathione hydrolase 1, mitochondrial"	AT2G43430.1	glyoxalase 2-1 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1441.1.S1_at	A	A1TS	POPTR_0002s13160	POPTR_0002s13160 (11)	scaffold_2:9787125-9788160(-) (11)	NA	Q28FY5	Transmembrane protein 147	AT1G47640.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2053, membrane (InterPro:IPR019164); Has 204 Blast hits to 204 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). "	LOC_Os03g55730.1	"SSA2 - 2S albumin seed storage family protein precursor, putative, expressed"	Medtr3g148750.1	"Transmembrane protein 147, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1443.1.S1_at	A	A1TS	POPTR_0010s11610	POPTR_0010s11610 (9)	scaffold_10:11808886-11809291(+) (9)	NA	Q9C9W9	Adagio protein 3	AT1G68050.1	"flavin-binding, kelch repeat, f box 1 "	LOC_Os11g34460.1	"OsFBO10 - F-box and other domain containing protein, expressed"	Medtr4g156890.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1447.1.S1_at	A	A1TS	POPTR_0002s02520	POPTR_0002s02520 (11)	scaffold_2:1426578-1428130(+) (11)	NA	NA	NA	AT1G75690.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os03g14040.3	expressed protein	Medtr1g030990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1451.1.S1_at	A	A1TS	POPTR_0008s19280	POPTR_0008s19280 (11)	scaffold_8:13229510-13230940(-) (11)	NA	Q8YLP4	Menaquinone biosynthesis methyltransferase ubiE	AT1G23360.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g42870.2	"methyltransferase domain containing protein, putative, expressed"	Medtr5g035030.1	UbiE/COQ5 methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1453.1.A1_s_at	A	A1TS	POPTR_0010s08450	POPTR_0010s08450 (11)	scaffold_10:9361027-9361122(-) (11)	NA	NA	NA	AT4G14440.1	3-hydroxyacyl-CoA dehydratase 1 	LOC_Os05g45300.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr2g015150.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1459.1.A1_s_at	A	A1TS	POPTR_0012s12920	POPTR_0012s12920 (11)	scaffold_12:13284426-13284864(+) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT5G52430.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g57610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.146.1.S1_at	A	A1TS	POPTR_0016s01450	POPTR_0016s01450 (9)	scaffold_16:655554-656049(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1460.1.S1_a_at	A	A1TS	POPTR_0008s20950	POPTR_0008s20950 (11)	scaffold_8:14984606-14984728(-) (11)	NA	B9RT03	UPF0497 membrane protein 4	AT4G15610.1	Uncharacterised protein family (UPF0497) 	LOC_Os07g26110.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g139640.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1460.1.S1_at	A	A1TS	POPTR_0008s20950	POPTR_0008s20950 (11)	scaffold_8:14984766-14985406(-) (11)	NA	B9RT03	UPF0497 membrane protein 4	AT4G15610.1	Uncharacterised protein family (UPF0497) 	LOC_Os07g26110.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g139640.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1462.1.S1_s_at	A	A1TS	POPTR_0001s44140	POPTR_0001s44140 (11)	scaffold_1:44617825-44618731(+) (11)	NA	Q43312	Protein H2A.7	AT1G51060.1	histone H2A 10 	LOC_Os08g33100.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr2g096630.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.1462.3.S1_s_at	A	A2TS	POPTR_0016s00240	POPTR_0016s00240 (11)//POPTR_0006s00240 (10)	scaffold_16:22710-23037(-) (11)//scaffold_6:29005-29332(+) (10)	NA	Q40193	Ras-related protein Rab11C	AT1G07410.1	RAB GTPase homolog A2B 	LOC_Os03g60870.1	"ras-related protein, putative, expressed"	Medtr3g092520.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1463.2.S1_s_at	A	A1TA	POPTR_0013s13050	POPTR_0013s13050 (10)	scaffold_13:13619965-13620222(-) (10)	NA	Q9LT67	Transcription factor bHLH113	AT1G05710.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr4g128550.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1463.3.A1_s_at	A	A1TS	POPTR_0004s24420	POPTR_0004s24420 (9)	scaffold_4:23096807-23096839(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1464.2.S1_at	A	A1TS	POPTR_0004s11250	POPTR_0004s11250 (11)	scaffold_4:9870846-9870947(-) (11)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1464.2.S1_x_at	A	A1TS	POPTR_0004s11250	POPTR_0004s11250 (11)	scaffold_4:9870710-9870947(-) (11)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1465.5.S1_x_at	A	A1TS	POPTR_0004s09910	POPTR_0004s09910 (11)	scaffold_4:8434095-8434611(-) (11)	NA	P24007	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g19381.1	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.1	"Ribulose bisphosphate carboxylase, small chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
Ptp.1466.1.S1_at	A	A1TS	POPTR_0006s06300	POPTR_0006s06300 (10)	scaffold_6:4502868-4503301(+) (10)	NA	O22060	Sucrose-phosphate synthase 1	AT5G20280.1	sucrose phosphate synthase 1F 	LOC_Os08g20660.2	"sucrose-phosphate synthase, putative, expressed"	Medtr8g121670.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
Ptp.1468.1.S1_s_at	A	A2TS	POPTR_0008s16320	POPTR_0010s08580 (11)//POPTR_0008s16320 (11)	scaffold_10:9488172-9490369(+) (11)//scaffold_8:10935859-10938072(-) (11)	NA	Q8RY18	MATH domain-containing protein At5g43560	AT1G04300.1	TRAF-like superfamily protein 	LOC_Os12g40520.1	"MATH domain containing protein, expressed"	Medtr1g064840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.147.1.S1_at	A	A1TS	POPTR_0007s07470	POPTR_0007s07470 (11)	scaffold_7:5818414-5818691(-) (11)	NA	P57742	Probable prefoldin subunit 5	AT5G23290.1	prefoldin 5 	LOC_Os10g34670.1	"prefoldin, putative, expressed"	Medtr1g143760.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.1472.1.S1_at	A	A1TS	POPTR_0008s11120	POPTR_0008s11120 (10)	scaffold_8:7024970-7025070(-) (10)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os09g29930.2	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.1474.1.S1_at	A	A1TS	POPTR_0011s11540	POPTR_0011s11540 (10)	scaffold_11:14287918-14289767(-) (10)	NA	O49453	Uncharacterized protein At4g28440	AT2G33845.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1475.1.S1_at	A	A1TS	POPTR_0008s15530	POPTR_0008s15530 (11)	scaffold_8:10308468-10308997(-) (11)	NA	O23714	Proteasome subunit beta type-2-A	AT3G22630.1	20S proteasome beta subunit D1 	LOC_Os03g48930.1	"peptidase, T1 family, putative, expressed"	Medtr5g007000.1	"20S proteasome, A and B subunits "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1476.1.S1_s_at	A	A1TS	POPTR_0018s02010	POPTR_0018s02010 (11)	scaffold_18:1809259-1809365(+) (11)	NA	Q8VY97	UPF0480 protein At4g32130	AT2G25310.1	Protein of unknown function (DUF2012) 	LOC_Os06g43650.2	"secreted salivary protein, putative, expressed"	Medtr3g137720.1	Carbohydrate-binding-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1477.1.S1_x_at	A	A1TS	POPTR_0011s13770	POPTR_0011s13770 (11)	scaffold_11:16430436-16430787(+) (11)	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os07g30640.1	"ubiquitin fusion protein, putative, expressed"	Medtr6g067240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1477.2.S1_at	A	A1TA	POPTR_0017s06670	POPTR_0017s06670 (11)	scaffold_17:5113604-5113737(+) (11)	NA	NA	NA	AT4G15248.1	B-box type zinc finger family protein 	LOC_Os08g08120.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g103560.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.148.1.S1_at	A	A1TS	POPTR_0008s05400	POPTR_0008s05400 (11)	scaffold_8:3119390-3119571(-) (11)	NA	P42747	Ubiquitin-conjugating enzyme E2 14	AT3G55380.1	ubiquitin-conjugating enzyme 14 	LOC_Os01g62244.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g078810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.1481.1.S1_at	A	A1TS	POPTR_0006s27010	POPTR_0006s27010 (10)	scaffold_6:25036403-25036487(+) (10)	NA	NA	NA	AT5G25360.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). 	LOC_Os02g10720.1	expressed protein	Medtr4g005450.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1482.1.S1_s_at	A	A2TS	POPTR_0001s24330	POPTR_0474s00200 (11)//POPTR_0001s24330 (11)	scaffold_1:23644967-23645143(+) (11)//scaffold_474:1448-1624(-) (11)	NA	Q9FVI1	Actin-depolymerizing factor 2	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.1483.1.S1_at	A	A1TS	POPTR_0001s04110	POPTR_0001s04110 (10)	scaffold_1:3253595-3254215(+) (10)	NA	Q92177	Calpain-3	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
Ptp.1487.1.A1_s_at	A	A1TS	POPTR_0009s04880	POPTR_0009s04880 (11)	scaffold_9:5110596-5111348(-) (11)	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1487.2.S1_at	A	A1MS	POPTR_0009s04880	POPTR_0009s04880 (10)	scaffold_9:5110594-5110706(-) (10)	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1488.1.S1_a_at	A	A1TS	POPTR_0014s14790	POPTR_0014s14790 (11)	scaffold_14:10863037-10863548(-) (11)	NA	P19892	Ras-related protein ARA-1	AT2G31680.1	RAB GTPase homolog A5D 	LOC_Os08g41340.1	"ras-related protein, putative, expressed"	Medtr7g046180.1	"Ras-related protein ARA-1, putative "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1489.2.S1_s_at	A	A3TS	POPTR_0005s21570	POPTR_0005s21570 (11)//POPTR_0005s21590 (11)//POPTR_0005s21600 (11)	scaffold_5:20691238-20691276(+) (11)//scaffold_5:20704594-20704632(+) (11)//scaffold_5:20711277-20711315(+) (11)	NA	P37219	Abscisic stress-ripening protein 2	NA	NA	LOC_Os01g72900.1	"abscisic stress-ripening, putative, expressed"	NA	NA	GO:0006950|response to stress	NA	NA
Ptp.149.1.S1_a_at	A	A2TS	POPTR_0016s13450	POPTR_0016s13450 (11)//POPTR_0064s00280 (11)	scaffold_16:12608248-12609068(-) (11)//scaffold_64:89029-89850(+) (11)	NA	Q76BK2	Macrophage migration inhibitory factor	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os12g01680.1	"macrophage migration inhibitory factor, putative"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1490.1.S1_at	A	A1TS	POPTR_0014s01910	POPTR_0014s01910 (10)	scaffold_14:1738097-1738276(+) (10)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1490.1.S1_s_at	A	A1TS	POPTR_0014s01910	POPTR_0014s01910 (11)	scaffold_14:1737816-1738165(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1491.1.S1_s_at	A	A1TS	POPTR_0003s09530	POPTR_0003s09530 (9)	scaffold_3:10844596-10844836(+) (9)	NA	NA	NA	AT1G32230.1	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1492.1.S1_s_at	A	A1TS	POPTR_0010s01700	POPTR_0010s01700 (11)	scaffold_10:1892082-1892125(+) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.1492.1.S1_x_at	A	A1TS	POPTR_0010s01700	POPTR_0010s01700 (11)	scaffold_10:1891555-1892297(+) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.1492.2.S1_x_at	A	A1TS	POPTR_0010s01700	POPTR_0010s01700 (11)	scaffold_10:1891483-1892236(+) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.1494.1.S1_s_at	A	A1TS	POPTR_0001s32250	POPTR_0001s32250 (11)	scaffold_1:30651019-30651274(-) (11)	NA	Q9SVQ0	Ethylene-responsive transcription factor ERF062	AT4G13620.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g09170.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr1g111860.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.1496.1.S1_s_at	A	A1TS	POPTR_0004s22740	POPTR_0004s22740 (11)	scaffold_4:21613802-21614210(+) (11)	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.1	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1497.1.S1_s_at	A	A1TS	POPTR_0014s11000	POPTR_0014s11000 (11)	scaffold_14:8195607-8195704(-) (11)	NA	A9P822	S-adenosylmethionine synthase 1	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.1497.2.S1_x_at	A	A2TS	POPTR_0002s19000	POPTR_0274s00200 (11)//POPTR_0002s19000 (11)	scaffold_2:14899437-14899978(-) (11)//scaffold_274:7467-8274(-) (11)	NA	A9P822	S-adenosylmethionine synthase 1	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.1498.1.A1_at	A	A1TS	POPTR_0001s37730	POPTR_0001s37730 (11)	scaffold_1:36797884-36798282(+) (11)	NA	Q8GY23	E3 ubiquitin-protein ligase UPL1	AT1G55860.1	ubiquitin-protein ligase 1 	LOC_Os09g07900.1	"ubiquitin-protein ligase 1, putative, expressed"	Medtr5g075640.1	"HECT; Ubiquitin interacting motif; UBA-like; DUF913, E3 ubiquitin ligase TOM1; "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
Ptp.150.1.A1_at	A	A1TS	POPTR_0013s08340	POPTR_0013s08340 (11)	scaffold_13:7414947-7415061(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1500.1.A1_at	A	A1TS	POPTR_0009s13640	POPTR_0009s13640 (11)	scaffold_9:10824826-10825289(-) (11)	NA	P81393	Myb-related protein 308	AT4G38620.1	myb domain protein 4 	LOC_Os09g36730.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1501.1.A1_s_at	A	A2TS	POPTR_0007s13320	POPTR_0007s13320 (11)//POPTR_0007s13330 (11)	scaffold_7:13433270-13442797(+) (11)//scaffold_7:13442787-13452213(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G18193.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr5g020890.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.1502.1.S1_a_at	A	A1TS	POPTR_0016s05220	POPTR_0016s05220 (11)	scaffold_16:3179666-3179916(-) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g111060.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.1502.3.S1_a_at	A	A1TS	POPTR_0016s05220	POPTR_0016s05220 (11)	scaffold_16:3180332-3181750(-) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g111060.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.1504.2.S1_s_at	A	A1TS	POPTR_0004s04320	POPTR_0004s04320 (11)	scaffold_4:3089542-3090093(-) (11)	NA	Q42877	DNA-directed RNA polymerase II subunit RPB2	AT4G21710.1	DNA-directed RNA polymerase family protein 	LOC_Os03g44484.2	"DNA-directed RNA polymerase II subunit RPB2, putative, expressed"	Medtr1g028340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1505.1.S1_a_at	A	A1TS	POPTR_0001s06700	POPTR_0001s06700 (11)	scaffold_1:5149892-5150573(+) (11)	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr8g043600.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.1507.1.S1_s_at	A	A1TS	POPTR_0003s08940	POPTR_0003s08940 (11)	scaffold_3:10234147-10234563(+) (11)	NA	P54672	AP-2 complex subunit mu	AT5G46630.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os02g46510.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g014510.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.1508.1.A1_s_at	A	A1TS	POPTR_0016s05020	POPTR_0016s05020 (11)	scaffold_16:3052548-3053226(-) (11)	NA	Q8C1A9	Uncharacterized protein C4orf29 homolog	AT3G12150.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os02g10160.1	"AGAP003371-PA, putative, expressed"	Medtr7g111340.1	"Uncharacterized protein C4orf29 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1510.1.S1_s_at	A	A1TS	POPTR_0014s14740	POPTR_0014s14740 (11)	scaffold_14:10824558-10824834(+) (11)	NA	Q8W453	Putative lipid-transfer protein DIR1	AT5G48490.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g18750.1	"LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g045700.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1511.1.S1_at	A	A1TS	POPTR_0002s04910	POPTR_0002s04910 (11)	scaffold_2:3158472-3158559(-) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	NA	GO:0005515|protein binding	NA
Ptp.1511.1.S1_s_at	A	A2TS	POPTR_0002s04910	POPTR_0002s04910 (11)//POPTR_1438s00200 (11)	scaffold_1438:6242-6536(-) (11)//scaffold_2:3153608-3153902(-) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	NA	GO:0005515|protein binding	NA
Ptp.1512.1.S1_s_at	A	A1TS	POPTR_0019s08610	POPTR_0019s08610 (11)	scaffold_19:10115183-10115892(-) (11)	NA	O65333	Chalcone--flavonone isomerase	AT5G05270.2	Chalcone-flavanone isomerase family protein 	LOC_Os12g02370.3	"chalcone--flavonone isomerase, putative, expressed"	Medtr1g146220.1	Chalcone-flavanone isomerase 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
Ptp.1513.2.A1_a_at	A	A1TS	POPTR_0008s17980	POPTR_0008s17980 (11)	scaffold_8:12067016-12068011(-) (11)	NA	Q9FX53	Trihelix transcription factor GT-1	AT1G13450.1	Homeodomain-like superfamily protein 	LOC_Os04g40930.1	"MYB family transcription factor, putative, expressed"	Medtr3g103160.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1515.1.S1_a_at	A	A1TS	POPTR_0010s10140	POPTR_0010s10140 (11)	scaffold_10:10711015-10711208(+) (11)	NA	P46293	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1515.1.S1_x_at	A	A1TS	POPTR_0010s10140	POPTR_0010s10140 (11)	scaffold_10:10710939-10711198(+) (11)	NA	P46293	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1516.3.S1_s_at	A	A1TS	POPTR_0001s38470	POPTR_0001s38470 (11)	scaffold_1:37598490-37598751(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1518.1.A1_a_at	A	A1TS	POPTR_0003s04860	POPTR_0003s04860 (11)	scaffold_3:5901834-5903373(+) (11)	NA	Q9ZU11	Homeobox-leucine zipper protein ATHB-15	AT1G52150.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr8g015460.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.1518.2.S1_a_at	A	A1TS	POPTR_0003s04860	POPTR_0003s04860 (9)	scaffold_3:5901828-5903287(+) (9)	NA	Q9ZU11	Homeobox-leucine zipper protein ATHB-15	AT1G52150.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr8g015460.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.1519.1.S1_s_at	A	A1TS	POPTR_0001s38940	POPTR_0001s38940 (11)	scaffold_1:38195140-38195208(-) (11)	NA	Q9CQU8	Mitochondrial inner membrane protease subunit 1	AT1G53530.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os11g40500.3	"OsSigP7 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr8g043500.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.152.1.S1_at	A	A1TS	POPTR_0002s07270	POPTR_0002s07270 (11)	scaffold_2:4972026-4972142(+) (11)	NA	NA	NA	AT1G48880.1	TRICHOME BIREFRINGENCE-LIKE 7 	LOC_Os01g65800.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr3g125130.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.153.1.S1_at	A	A1TS	POPTR_0011s10720	POPTR_0011s10720 (9)	scaffold_11:13302422-13302742(+) (9)	NA	Q9SYL9	"50S ribosomal protein L13, chloroplastic"	AT1G78630.1	Ribosomal protein L13 family protein 	LOC_Os01g54540.1	"ribosomal protein L13, putative, expressed"	Medtr3g106560.1	Ribosomal protein L13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.154.1.S1_at	A	A1TS	POPTR_0003s14880	POPTR_0003s14880 (9)	scaffold_3:14821399-14821871(-) (9)	NA	Q9SHE9	LOB domain-containing protein 4	AT1G31320.1	LOB domain-containing protein 4 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr4g114920.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.154.2.S1_at	A	A1MS	POPTR_0003s14880	POPTR_0003s14880 (11)	scaffold_3:14823114-14823483(-) (11)	NA	Q9SHE9	LOB domain-containing protein 4	AT1G31320.1	LOB domain-containing protein 4 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr4g114920.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1540.1.S1_s_at	A	A1TS	POPTR_0012s06320	POPTR_0012s06320 (11)	scaffold_12:6661547-6661603(+) (11)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
Ptp.1540.3.S1_s_at	A	A1TS	POPTR_0012s06320	POPTR_0012s06320 (11)	scaffold_12:6660676-6661351(+) (11)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
Ptp.1542.1.S1_at	A	A3TS	POPTR_0014s01960	POPTR_0602s00200 (11)//POPTR_0014s01960 (11)//POPTR_0602s00210 (11)	scaffold_14:1753113-1753154(-) (11)//scaffold_602:3504-3545(+) (11)//scaffold_602:10807-10848(+) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1542.1.S1_s_at	A	A3TS	POPTR_0014s01960	POPTR_0602s00200 (11)//POPTR_0014s01960 (11)//POPTR_0602s00210 (11)	scaffold_14:1752867-1753227(-) (11)//scaffold_602:3431-3791(+) (11)//scaffold_602:10734-11094(+) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1543.1.S1_at	A	A1TS	POPTR_0009s03320	POPTR_0009s03320 (11)	scaffold_9:3989528-3989763(+) (11)	NA	Q9FVI1	Actin-depolymerizing factor 2	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.1543.2.S1_s_at	A	A1TS	POPTR_0009s03330	POPTR_0009s03330 (11)	scaffold_9:3993247-3993380(+) (11)	NA	Q9FVI2	Actin-depolymerizing factor 1	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.1544.1.S1_x_at	A	A1TS	POPTR_0002s06680	POPTR_0002s06680 (11)	scaffold_2:4490796-4491402(-) (11)	POPTR_0005s21640 (7)	P35684	60S ribosomal protein L3	AT1G43170.8	ribosomal protein 1 	LOC_Os12g07010.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1544.2.S1_at	A	A1TS	POPTR_0005s21640	POPTR_0005s21640 (10)	scaffold_5:20749586-20750420(+) (10)	NA	P35684	60S ribosomal protein L3	AT1G43170.8	ribosomal protein 1 	LOC_Os12g07010.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1546.1.S1_at	A	A1TS	POPTR_0002s11150	POPTR_0002s11150 (10)	scaffold_2:8185525-8185951(-) (10)	NA	Q9LRH6	GATA transcription factor 25	AT4G24470.2	GATA-type zinc finger protein with TIFY domain 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149710.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.1547.1.S1_s_at	A	A1TS	POPTR_0013s03160	POPTR_0013s03160 (11)	scaffold_13:1923165-1925070(-) (11)	NA	P93258	Superoxide dismutase [Cu-Zn] 1	AT1G08830.2	copper/zinc superoxide dismutase 1 	LOC_Os03g22810.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr7g140060.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
Ptp.1548.1.S1_at	A	A1TS	POPTR_0001s20410	POPTR_0001s20410 (11)	scaffold_1:18368887-18370046(-) (11)	NA	Q84WC6	Ubiquitin carboxyl-terminal hydrolase 7	AT3G21280.1	ubiquitin-specific protease 7 	LOC_Os01g36930.1	"ubiquitin carboxyl-terminal hydrolase 6, putative, expressed"	AC235757_28.1	"Ubiquitin; Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 AC235757.1 83788-89694 E EGN_Mt090430 200"	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.1549.1.S1_at	A	A1TS	POPTR_0008s15950	POPTR_0008s15950 (11)	scaffold_8:10641738-10642080(+) (11)	NA	Q43117	"Pyruvate kinase isozyme A, chloroplastic"	AT3G22960.1	Pyruvate kinase family protein 	LOC_Os07g08340.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.155.1.S1_at	A	A1TS	POPTR_0001s30160	POPTR_0001s30160 (11)	scaffold_1:28709560-28710890(-) (11)	NA	O80977	Vacuolar-sorting receptor 3	AT2G14740.2	vaculolar sorting receptor 3 	LOC_Os10g20630.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1550.1.S1_at	A	A1TS	POPTR_0010s08880	POPTR_0010s08880 (11)	scaffold_10:9662301-9662561(-) (11)	NA	Q38832	Auxin-responsive protein IAA14	AT4G14550.1	indole-3-acetic acid inducible 14 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1550.1.S1_x_at	A	A1TS	POPTR_0010s08880	POPTR_0010s08880 (11)	scaffold_10:9662301-9663159(-) (11)	NA	Q38832	Auxin-responsive protein IAA14	AT4G14550.1	indole-3-acetic acid inducible 14 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1551.1.S1_at	A	A1TS	POPTR_0001s22980	POPTR_0001s22980 (11)	scaffold_1:22027545-22027628(-) (11)	NA	P93171	Calmodulin	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1551.1.S1_x_at	A	A1TS	POPTR_0001s22980	POPTR_0001s22980 (11)	scaffold_1:22027522-22027673(-) (11)	NA	P93171	Calmodulin	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1553.1.S1_a_at	A	A1TS	POPTR_0014s05450	POPTR_0014s05450 (11)	scaffold_14:4084841-4085312(-) (11)	POPTR_0014s05480 (7)	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1555.1.S1_a_at	A	A2TS	POPTR_0003s03280	POPTR_0003s08320 (11)//POPTR_0003s03280 (11)	scaffold_3:3674123-3674483(-) (11)//scaffold_3:9705187-9705719(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1555.1.S1_at	A	A1TS	POPTR_0003s08320	POPTR_0003s08320 (11)	scaffold_3:9705019-9706826(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1555.1.S1_x_at	A	A1TS	POPTR_0003s08320	POPTR_0003s08320 (11)	scaffold_3:9705019-9706826(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1555.2.A1_at	A	A1TS	POPTR_0003s03280	POPTR_0003s03280 (11)	scaffold_3:3673940-3675222(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1556.1.A1_at	A	A1TS	POPTR_0006s01080	POPTR_0006s01080 (11)	scaffold_6:612132-612828(+) (11)	NA	A5PKH3	Fumarylacetoacetase	AT1G12050.1	"fumarylacetoacetase, putative "	LOC_Os02g10310.1	"fumarylacetoacetase, putative, expressed"	Medtr2g029700.1	Fumarylacetoacetase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0009072|aromatic amino acid family metabolic process	GO:0004334|fumarylacetoacetase activity	NA
Ptp.1557.2.S1_s_at	A	A1TS	POPTR_0003s09400	POPTR_0003s09400 (11)	scaffold_3:10689156-10692618(-) (11)	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr8g077680.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
Ptp.1558.1.S1_at	A	A1TS	POPTR_0001s32170	POPTR_0001s32170 (11)	scaffold_1:30588011-30588150(+) (11)	NA	Q9FKC0	60S ribosomal protein L13a-4	AT5G48760.2	Ribosomal protein L13 family protein 	LOC_Os03g54890.1	"ribosomal protein L13, putative, expressed"	Medtr5g091220.1	"Ribosomal protein L13, archea and eukaryotic form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1559.1.S1_s_at	A	A2TS	POPTR_0016s07730	POPTR_0016s07770 (11)//POPTR_0016s07730 (11)	scaffold_16:5578353-5579012(-) (11)//scaffold_16:5601163-5601822(+) (11)	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
Ptp.1560.1.S1_at	A	A1TS	POPTR_0008s08410	POPTR_0008s08410 (10)	scaffold_8:5211762-5212169(-) (10)	NA	Q42961	"Phosphoglycerate kinase, chloroplastic"	AT3G12780.1	phosphoglycerate kinase 1 	LOC_Os05g41640.2	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077510.1	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
Ptp.1562.2.S1_a_at	A	A1TS	POPTR_0004s01560	POPTR_0004s01560 (11)	scaffold_4:925963-926328(-) (11)	NA	NA	NA	AT1G11700.1	"Protein of unknown function, DUF584 "	LOC_Os01g64300.1	"DUF584 domain containing protein, putative, expressed"	Medtr8g146700.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1563.2.S1_s_at	A	A3TS	POPTR_0014s05270	POPTR_0403s00200 (11)//POPTR_0014s05270 (11)//POPTR_0014s05290 (11)	scaffold_14:3990237-3990575(+) (11)//scaffold_14:4002126-4002464(+) (11)//scaffold_403:12892-13230(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G60470.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010620.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1568.1.S1_s_at	A	A1TS	POPTR_0017s02490	POPTR_0017s02490 (11)	scaffold_17:1805046-1805229(+) (11)	NA	Q39263	Zinc finger protein 4	AT1G66140.1	zinc finger protein 4 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr5g085190.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.157.1.S1_s_at	A	A1TS	POPTR_0022s00410	POPTR_0022s00410 (11)	scaffold_22:137169-137564(+) (11)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.1572.1.A1_at	A	A1TS	POPTR_0017s12040	POPTR_0017s12040 (11)	scaffold_17:12170963-12171344(-) (11)	NA	Q43847	"Granule-bound starch synthase 2, chloroplastic/amyloplastic"	AT3G01180.1	starch synthase 2 	LOC_Os10g30156.1	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.1573.1.S1_at	A	A1TS	POPTR_0010s08750	POPTR_0010s08750 (11)	scaffold_10:9607230-9607945(+) (11)	NA	P31674	40S ribosomal protein S15	AT5G09510.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1574.1.A1_at	A	A1TS	POPTR_0013s13520	POPTR_0013s13520 (11)	scaffold_13:13978696-13979063(-) (11)	NA	B9N2D0	UPF0497 membrane protein 10	AT1G03700.1	Uncharacterised protein family (UPF0497) 	LOC_Os05g15630.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
Ptp.1577.1.S1_at	A	A1TS	POPTR_0001s23420	POPTR_0001s23420 (10)	scaffold_1:22755674-22756152(-) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G44500.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr3g031560.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1580.1.S1_x_at	A	A1TS	POPTR_0005s07340	POPTR_0005s07340 (10)	scaffold_5:5013656-5013727(+) (10)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.1582.1.A1_at	A	A1TS	POPTR_0001s35620	POPTR_0001s35620 (11)	scaffold_1:33956462-33956824(-) (11)	NA	Q9LY84	GDSL esterase/lipase At5g14450	AT5G14450.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.1583.2.S1_x_at	A	A1TS	POPTR_0006s19870	POPTR_0006s19870 (11)	scaffold_6:18879070-18880244(-) (11)	NA	Q9AXJ4	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
Ptp.1584.1.S1_x_at	A	A1TS	POPTR_0005s26080	POPTR_0005s26080 (11)	scaffold_5:24200053-24200579(+) (11)	POPTR_0005s26070 (6)	P27495	"Chlorophyll a-b binding protein 40, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1584.2.S1_s_at	A	A1TS	POPTR_0011s02770	POPTR_0011s02770 (11)	scaffold_11:2703644-2703751(+) (11)	NA	P27493	"Chlorophyll a-b binding protein 21, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1584.3.S1_x_at	A	A1TS	POPTR_0005s26070	POPTR_0005s26070 (11)	scaffold_5:24197614-24198001(-) (11)	NA	P27490	"Chlorophyll a-b binding protein 8, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1584.4.S1_x_at	A	A1TS	POPTR_0005s26080	POPTR_0005s26080 (11)	scaffold_5:24200043-24200553(+) (11)	POPTR_0005s26070 (7)	P27495	"Chlorophyll a-b binding protein 40, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1585.1.S1_at	A	A1TS	POPTR_0003s05240	POPTR_0003s05240 (10)	scaffold_3:6480766-6480949(+) (10)	NA	NA	NA	AT1G15230.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g009250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1586.2.S1_a_at	A	A2TS	POPTR_0002s22690	POPTR_0014s13900 (11)//POPTR_0002s22690 (11)	scaffold_14:10165046-10165233(+) (11)//scaffold_2:19522129-19522316(-) (11)	NA	NA	NA	AT2G42610.2	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g111640.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1587.1.S1_s_at	A	A1TS	POPTR_0008s01820	POPTR_0008s01820 (11)	scaffold_8:860691-861014(+) (11)	NA	Q9LZ17	40S ribosomal protein S17-4	AT5G04800.4	Ribosomal S17 family protein 	LOC_Os03g01900.1	"40S ribosomal protein S17, putative, expressed"	AC146550_7.1	Ribosomal protein S17e AC146550.40 29233-28681 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1588.1.S1_s_at	A	A1TS	POPTR_0010s22950	POPTR_0010s22950 (11)	scaffold_10:19653365-19653414(-) (11)	NA	Q9SV31	Probable aquaporin PIP2-5	AT3G54820.1	plasma membrane intrinsic protein 2;5 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.1589.1.S1_x_at	A	A1TS	POPTR_0007s01660	POPTR_0007s01660 (10)	scaffold_7:957346-959251(+) (10)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1589.2.S1_x_at	A	A1TS	POPTR_0017s05460	POPTR_0017s05460 (9)	scaffold_17:4319017-4320949(+) (9)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.159.1.S1_at	A	A1TS	POPTR_0018s05410	POPTR_0018s05410 (9)	scaffold_18:4945173-4945240(-) (9)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1591.1.S1_s_at	A	A1TS	POPTR_0009s13620	POPTR_0009s13620 (11)	scaffold_9:10813486-10813628(+) (11)	NA	O24030	Proteasome subunit alpha type-7	AT5G66140.1	proteasome alpha subunit D2 	LOC_Os08g43540.1	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1593.1.A1_at	A	A1TS	POPTR_0014s00900	POPTR_0014s00900 (11)	scaffold_14:816713-817201(-) (11)	NA	Q9VCY8	ADIPOR-like receptor CG5315	AT4G37680.2	heptahelical protein 4 	LOC_Os03g13040.1	"haemolysin-III, putative, expressed"	Medtr5g015420.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
Ptp.1593.1.A1_s_at	A	A1TS	POPTR_0014s00900	POPTR_0014s00900 (11)	scaffold_14:816842-817252(-) (11)	NA	Q9VCY8	ADIPOR-like receptor CG5315	AT4G37680.2	heptahelical protein 4 	LOC_Os03g13040.1	"haemolysin-III, putative, expressed"	Medtr5g015420.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
Ptp.1595.1.A1_at	A	A1TS	POPTR_0010s10120	POPTR_0010s10120 (11)	scaffold_10:10684145-10685989(-) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT3G05990.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g08610.1	"leucine-rich repeat family protein, putative, expressed"	Medtr1g132820.1	"Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, related "	NA	GO:0005515|protein binding	NA
Ptp.1596.1.A1_at	A	A1TS	POPTR_0003s21190	POPTR_0003s21190 (9)	scaffold_3:19445730-19446231(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
Ptp.1599.1.A1_at	A	A1TS	POPTR_0009s12430	POPTR_0009s12430 (11)	scaffold_9:10142360-10142398(-) (11)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT4G39080.1	vacuolar proton ATPase A3 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.16.1.S1_at	A	A1TS	POPTR_0014s01740	POPTR_0014s01740 (11)	scaffold_14:1629155-1629391(-) (11)	NA	P31166	"Adenine phosphoribosyltransferase 1, chloroplastic"	AT1G27450.1	adenine phosphoribosyl transferase 1 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.16.1.S1_s_at	A	A1TS	POPTR_0014s01740	POPTR_0014s01740 (11)	scaffold_14:1629418-1630292(-) (11)	NA	P31166	"Adenine phosphoribosyltransferase 1, chloroplastic"	AT1G27450.1	adenine phosphoribosyl transferase 1 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.160.1.S1_x_at	A	A1TS	POPTR_0002s20570	POPTR_0002s20570 (11)	scaffold_2:16650669-16651008(-) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1600.1.A1_s_at	A	A1TS	POPTR_0001s33890	POPTR_0001s33890 (11)	scaffold_1:32051644-32052385(-) (11)	NA	Q9FMT4	SWI/SNF complex component SNF12 homolog	AT5G14170.1	SWIB/MDM2 domain superfamily protein 	LOC_Os04g31320.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr8g109310.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1601.1.A1_at	A	A1TS	POPTR_0003s14260	POPTR_0003s14260 (11)	scaffold_3:14372393-14372895(-) (11)	NA	Q84TF5	RING-H2 zinc finger protein RHA4a	AT4G24015.1	RING/U-box superfamily protein 	LOC_Os02g35144.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g031670.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1602.1.S1_at	A	A1TS	POPTR_0005s27890	POPTR_0005s27890 (11)	scaffold_5:25353263-25354044(-) (11)	POPTR_0002s00520 (7)	Q8LF80	Cyclin-dependent kinase B2-1	AT1G76540.1	cyclin-dependent kinase B2;1 	LOC_Os08g40170.1	"cyclin-dependent kinase B2-1, putative, expressed"	Medtr1g090200.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1606.1.A1_at	A	A1TS	POPTR_0018s04060	POPTR_0018s04060 (11)	scaffold_18:3474606-3474961(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os08g40880.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g133100.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1608.1.A1_at	A	A1TS	POPTR_0002s18590	POPTR_0002s18590 (11)	scaffold_2:14453676-14453981(-) (11)	NA	Q8RWN7	Protein phosphatase 2C 32	AT2G46920.2	Protein phosphatase 2C family protein 	LOC_Os03g25600.2	"protein phosphatase 2C, putative, expressed"	Medtr8g102940.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1609.1.A1_s_at	A	A1TS	POPTR_0004s13530	POPTR_0004s13530 (11)	scaffold_4:13818285-13818579(+) (11)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.161.1.S1_at	A	A1TS	POPTR_0002s12130	POPTR_0002s12130 (11)	scaffold_2:9004320-9004703(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1610.1.A1_a_at	A	A1TS	POPTR_0007s12370	POPTR_0007s12370 (11)	scaffold_7:12698373-12698428(+) (11)	NA	Q94A43	BES1/BZR1 homolog protein 2	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1611.1.A1_at	A	A1TS	POPTR_0002s22380	POPTR_0002s22380 (11)	scaffold_2:19084306-19084768(-) (11)	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1614.1.A1_at	A	A1TS	POPTR_0018s14730	POPTR_0018s14730 (10)	scaffold_18:14824770-14825113(-) (10)	NA	Q93Z08	"Glucan endo-1,3-beta-glucosidase 6"	AT5G58090.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g04670.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1616.1.A1_s_at	A	A1TS	POPTR_0014s09050	POPTR_0014s09050 (11)	scaffold_14:6683324-6683950(-) (11)	NA	Q9M373	Arabinogalactan peptide 20	AT3G61640.1	arabinogalactan protein 20 	LOC_Os01g46850.1	expressed protein	Medtr3g124660.1	Protein of unknown function DUF1070 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1618.1.A1_at	A	A1TS	POPTR_0015s07500	POPTR_0015s07500 (11)	scaffold_15:8797560-8797969(+) (11)	NA	NA	NA	AT5G62550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). 	LOC_Os06g38960.2	expressed protein	Medtr8g112630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1619.1.S1_at	A	A1TS	POPTR_0005s25750	POPTR_0005s25750 (11)	scaffold_5:23955196-23956150(+) (11)	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.162.1.A1_at	A	A1TS	POPTR_0002s20260	POPTR_0002s20260 (11)	scaffold_2:16215073-16215815(+) (11)	NA	O81122	Ethylene receptor	AT2G40940.1	ethylene response sensor 1 	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.1621.3.S1_s_at	A	A1TS	POPTR_0019s08060	POPTR_0019s08060 (10)	scaffold_19:9424792-9426495(-) (10)	NA	Q6ZIB9	UPF0016 protein 4	AT5G36290.2	Uncharacterized protein family (UPF0016) 	LOC_Os08g41670.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr7g089540.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
Ptp.1622.1.A1_s_at	A	A1TS	POPTR_0007s10720	POPTR_0007s10720 (11)	scaffold_7:10763921-10764252(+) (11)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G67200.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1623.1.S1_at	A	A1TS	POPTR_0019s01600	POPTR_0019s01600 (11)	scaffold_19:1413215-1413580(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT2G03200.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g37550.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr5g088120.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1627.1.A1_s_at	A	A1TS	POPTR_0001s45780	POPTR_0001s45780 (9)	scaffold_1:46306048-46306615(+) (9)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.1629.1.A1_s_at	A	A2TS	POPTR_0001s28070	POPTR_0009s07280 (11)//POPTR_0001s28070 (11)	scaffold_1:26872878-26872933(+) (11)//scaffold_9:6839520-6839575(+) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os01g16350.2	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.1	Hydroxymethylglutaryl-coenzyme A lyase active site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1631.1.S1_at	A	A1TS	POPTR_0002s12460	POPTR_0002s12460 (11)	scaffold_2:9245820-9246344(+) (11)	NA	Q9C626	F-box protein At1g47056	AT1G47056.1	VIER F-box proteine 1 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1631.2.A1_at	A	A1TA	POPTR_0002s12460	POPTR_0002s12460 (11)	scaffold_2:9246236-9246339(-) (11)	NA	Q9C626	F-box protein At1g47056	AT1G47056.1	VIER F-box proteine 1 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1634.1.A1_at	A	A1TS	POPTR_0014s07960	POPTR_0014s07960 (11)	scaffold_14:5919521-5920282(+) (11)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47040.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1635.1.S1_s_at	A	A1TS	POPTR_0006s08250	POPTR_0006s08250 (11)	scaffold_6:5987926-5988740(-) (11)	NA	Q43187	Soluble inorganic pyrophosphatase	AT3G53620.1	pyrophosphorylase 4 	LOC_Os05g02310.1	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr1g081230.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.1639.1.A1_at	A	A1TS	POPTR_0001s01930	POPTR_0001s01930 (11)	scaffold_1:1403212-1404402(-) (11)	NA	Q39639	"Glycerol-3-phosphate acyltransferase, chloroplastic"	AT1G32200.2	phospholipid/glycerol acyltransferase family protein 	LOC_Os10g42720.1	"acyltransferase, putative, expressed"	Medtr5g029110.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.164.1.S1_at	A	A1TS	POPTR_0017s11900	POPTR_0017s11900 (10)	scaffold_17:11866667-11867123(+) (10)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT3G28917.1	mini zinc finger 2 	LOC_Os08g37400.1	"ZF-HD homeobox protein, putative, expressed"	Medtr3g046460.1	ZF-HD homeobox protein Cys/His-rich dimerisation region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1640.2.S1_s_at	A	A2TS	POPTR_0008s04040	POPTR_0010s22840 (11)//POPTR_0008s04040 (11)	scaffold_10:19607714-19608771(+) (11)//scaffold_8:2231260-2232343(-) (11)	NA	P57720	"Chorismate synthase, chloroplastic"	AT1G48850.1	"chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative "	LOC_Os03g14990.1	"chorismate synthase 2, chloroplast precursor, putative, expressed"	Medtr1g121140.1	Chorismate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004107|chorismate synthase activity	NA
Ptp.1641.1.A1_at	A	A1TS	POPTR_0004s21200	POPTR_0004s21200 (11)	scaffold_4:20435117-20435732(+) (11)	NA	Q1E6U9	Protein transport protein SEC24	AT2G27460.1	sec23/sec24 transport family protein 	LOC_Os05g37120.1	"sec23/Sec24 zinc finger family protein, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
Ptp.1643.1.S1_s_at	A	A1TS	POPTR_0018s06400	POPTR_0018s06400 (11)	scaffold_18:6253252-6253467(+) (11)	NA	O48788	Probable inactive receptor kinase At2g26730	AT2G26730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g42294.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g118800.1	Formate C-acetyltransferase glycine radical; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1646.1.S1_a_at	A	A1TS	POPTR_0018s05760	POPTR_0018s05760 (11)	scaffold_18:5342983-5343274(+) (11)	NA	NA	NA	AT1G15260.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g158810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1647.1.S1_at	A	A1TS	POPTR_0001s17120	POPTR_0001s17120 (11)	scaffold_1:13994427-13995110(+) (11)	NA	Q5RC30	Signal peptidase complex catalytic subunit SEC11C	AT1G52600.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os06g16260.1	"OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed"	Medtr2g126230.1	"Peptidase S24, S26A and S26B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1650.1.A1_at	A	A1TS	POPTR_0008s02980	POPTR_0008s02980 (10)	scaffold_8:1570167-1570672(+) (10)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os03g01710.1	expressed protein	Medtr1g074280.1	Prefoldin 	NA	NA	GO:0016020|membrane
Ptp.1651.1.A1_at	A	A1TS	POPTR_0007s15270	POPTR_0007s15270 (10)	scaffold_7:14861318-14862769(-) (10)	NA	Q8L4M1	WD repeat-containing protein DWA1	AT2G19430.1	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 	LOC_Os09g19900.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC233845_6.1	WD40-like AC233845.2 14214-12180 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1652.1.A1_at	A	A1TS	POPTR_0002s26090	POPTR_0002s26090 (11)	scaffold_2:23063490-23063909(-) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os06g21340.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr8g147730.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
Ptp.1652.2.S1_s_at	A	A1TS	POPTR_0002s26090	POPTR_0002s26090 (11)	scaffold_2:23064645-23065895(-) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os06g21340.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr8g147730.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
Ptp.1653.1.A1_at	A	A1TS	POPTR_0004s10380	POPTR_0004s10380 (11)	scaffold_4:8912183-8912910(-) (11)	NA	Q9HGL3	Protein sum2	AT1G26110.2	decapping 5 	LOC_Os06g30060.2	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1655.1.A1_s_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (11)	scaffold_18:10253788-10254225(+) (11)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1655.3.A1_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (9)	scaffold_18:10245781-10246353(+) (9)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.166.1.S1_s_at	A	A1TS	POPTR_0002s15920	POPTR_0002s15920 (11)	scaffold_2:11859778-11860968(-) (11)	NA	P93788	Remorin	AT3G61260.1	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1660.1.A1_at	A	A1TS	POPTR_0014s05100	POPTR_0014s05100 (11)	scaffold_14:3889777-3889815(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.1	casein kinase II  beta chain 1 	LOC_Os10g41520.2	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.1661.1.S1_at	A	A1TS	POPTR_0016s09290	POPTR_0016s09290 (10)	scaffold_16:7296783-7296986(-) (10)	NA	Q8LJT8	TSL-kinase interacting protein 1	AT2G36960.3	TSL-kinase interacting protein 1 	LOC_Os03g13790.2	"myb/SANT domain protein, putative, expressed"	Medtr4g141280.1	"myb/SANT domain protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1662.1.A1_at	A	A1TS	POPTR_0002s15090	POPTR_0002s15090 (11)	scaffold_2:11187375-11188136(-) (11)	NA	NA	NA	AT5G42660.1	Protein of unknown function (DUF616) 	LOC_Os01g54530.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr1g025800.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1663.1.A1_s_at	A	A1TS	POPTR_0005s25260	POPTR_0005s25260 (11)	scaffold_5:23570881-23571203(+) (11)	NA	Q9SH88	Ribosome biogenesis regulatory protein homolog	AT2G37990.1	ribosome biogenesis regulatory protein (RRS1) family protein 	LOC_Os04g58830.1	"ribosome biogenesis regulatory protein, putative, expressed"	Medtr2g008920.1	Ribosomal biogenesis regulatory protein 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
Ptp.1665.1.S1_s_at	A	A1TS	POPTR_0015s08040	POPTR_0015s08040 (11)	scaffold_15:9316859-9317091(-) (11)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT5G62580.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1670.1.S1_at	A	A1TS	POPTR_0005s20670	POPTR_0005s20670 (11)	scaffold_5:19793797-19794121(-) (11)	NA	Q0WT31	Probable methyltransferase PMT25	AT2G34300.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1670.1.S1_s_at	A	A1TS	POPTR_0005s20670	POPTR_0005s20670 (11)	scaffold_5:19793520-19793808(-) (11)	NA	Q0WT31	Probable methyltransferase PMT25	AT2G34300.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1672.1.A1_a_at	A	A1TS	POPTR_0012s13080	POPTR_0012s13080 (11)	scaffold_12:13378036-13378105(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
Ptp.1672.1.A1_at	A	A1TS	POPTR_0012s13080	POPTR_0012s13080 (11)	scaffold_12:13376543-13377052(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
Ptp.1672.2.A1_at	A	A1MS	POPTR_0012s13080	POPTR_0012s13080 (11)	scaffold_12:13377720-13377994(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
Ptp.1674.1.A1_s_at	A	A1TS	POPTR_0005s08490	POPTR_0005s08490 (9)	scaffold_5:5899521-5899567(-) (9)	NA	P73627	Uncharacterized protein sll1770	AT5G64940.2	ABC2 homolog 13 	LOC_Os02g36570.1	"ABC1 family domain containing protein, putative, expressed"	Medtr3g144970.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1675.1.A1_at	A	A1TS	POPTR_0002s19550	POPTR_0002s19550 (10)	scaffold_184:26351-26759(-) (11)//scaffold_2:15521738-15522146(+) (11)//scaffold_2:15543508-15543910(+) (11)	NA	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT4G02010.1	Protein kinase superfamily protein 	LOC_Os01g14932.1	"NAK-like ser/thr protein kinase, putative, expressed"	Medtr7g133110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1676.1.A1_at	A	A1TS	POPTR_0005s05370	POPTR_0005s05370 (10)	scaffold_5:3551574-3553185(+) (10)	NA	Q9SQZ9	UPF0424 protein At3g04780	AT3G04780.1	Protein of unknown function (DUF1000) 	LOC_Os03g58130.1	"thioredoxin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1677.1.A1_at	A	A1TS	POPTR_0008s23190	POPTR_0008s23190 (11)	scaffold_8:18498663-18498819(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G16850.1	Pectin lyase-like superfamily protein 	LOC_Os11g43750.1	"polygalacturonase, putative, expressed"	Medtr8g138460.1	"Glycoside hydrolase, family 28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1681.1.A1_at	A	A1TS	POPTR_0008s04370	POPTR_0008s04370 (11)	scaffold_8:2453716-2455445(-) (11)	NA	Q54TH4	Golgi to ER traffic protein 4 homolog	AT5G63220.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). 	LOC_Os01g07100.1	expressed protein	Medtr1g121920.1	Protein of unknown function DUF410 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1682.1.A1_s_at	A	A1TS	POPTR_0011s07550	POPTR_0011s07550 (11)	scaffold_11:8383029-8383565(+) (11)	NA	NA	NA	AT1G29050.1	TRICHOME BIREFRINGENCE-LIKE 38 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr2g019150.2	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1683.1.S1_a_at	A	A1TS	POPTR_0002s10990	POPTR_0002s10990 (11)	scaffold_2:8012121-8012403(-) (11)	NA	P50433	"Serine hydroxymethyltransferase, mitochondrial"	AT5G26780.1	serine hydroxymethyltransferase 2 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.1686.1.A1_at	A	A1TS	POPTR_0001s44720	POPTR_0001s44720 (10)	scaffold_1:45145800-45146290(-) (10)	NA	Q59156	DNA polymerase I	AT1G50840.1	polymerase gamma 2 	LOC_Os08g07840.1	"PolI-like DNA polymerase, putative, expressed"	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
Ptp.1687.1.A1_at	A	A1TS	POPTR_0017s14120	POPTR_0017s14120 (9)	scaffold_17:14291900-14292269(-) (9)	NA	NA	NA	AT3G02420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g42010.1	expressed protein	AC233572_11.1	hypothetical protein AC233572.2 52137-58374 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1688.2.A1_at	A	A1MA	POPTR_0013s03780	POPTR_0013s03780 (10)	scaffold_13:2444059-2444540(-) (10)	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
Ptp.1690.1.A1_at	A	A1TS	POPTR_0009s07920	POPTR_0009s07920 (11)	scaffold_9:7330229-7330641(-) (11)	NA	C0LGU7	Probable LRR receptor-like serine/threonine-protein kinase At5g45840	AT5G45840.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr3g094640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1691.1.S1_at	A	A1TS	POPTR_0005s00250	POPTR_0005s00250 (9)	scaffold_5:35121-35253(+) (9)	NA	Q8BG09	Transmembrane protein 184B	AT3G05940.1	Protein of unknown function (DUF300) 	LOC_Os03g61210.1	"domain of unknown function domain containing protein, expressed"	Medtr7g134570.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1692.1.A1_s_at	A	A1TS	POPTR_0009s06890	POPTR_0009s06890 (11)	scaffold_9:6560430-6560657(-) (11)	NA	P74516	Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase slr0992	AT5G26880.2	AGAMOUS-like 26 	LOC_Os08g39600.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr3g030550.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.1694.1.S1_s_at	A	A2TS	POPTR_0012s09710	POPTR_0012s09710 (11)//POPTR_0015s10480 (11)	scaffold_12:10666569-10666640(+) (11)//scaffold_15:11396305-11396376(+) (11)	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
Ptp.1694.2.S1_at	A	A1MS	POPTR_0015s10480	POPTR_0015s10480 (10)	scaffold_15:11396414-11396611(+) (10)	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
Ptp.1696.1.A1_at	A	A1TS	POPTR_0002s06970	POPTR_0002s06970 (11)	scaffold_2:4721523-4721920(+) (11)	NA	Q0IIH8	Protein FAM188A	AT1G43690.1	ubiquitin interaction motif-containing protein 	LOC_Os04g34440.1	"ubiquitin interaction motif-containing protein, putative, expressed"	Medtr1g125350.1	Ubiquitin interacting motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.17.1.S1_at	A	A1TS	POPTR_0001s35220	POPTR_0001s35220 (10)	scaffold_1:33517097-33517549(+) (10)	NA	Q9LK94	"Probable monodehydroascorbate reductase, cytoplasmic isoform 2"	AT3G27820.1	monodehydroascorbate reductase 4 	LOC_Os02g47800.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.170.1.S1_s_at	A	A1TS	POPTR_0014s05240	POPTR_0014s05240 (11)	scaffold_14:3976098-3976339(+) (11)	NA	Q67YI6	RING-H2 finger protein ATL65	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1701.1.S1_at	A	A1TS	POPTR_0007s12270	POPTR_0007s12270 (11)	scaffold_7:12588894-12588944(-) (11)	NA	Q9S7G2	Probable galacturonosyltransferase-like 2	AT3G50760.1	galacturonosyltransferase-like 2 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1701.1.S1_s_at	A	A1TS	POPTR_0007s12270	POPTR_0007s12270 (11)	scaffold_7:12588992-12589406(-) (11)	NA	Q9S7G2	Probable galacturonosyltransferase-like 2	AT3G50760.1	galacturonosyltransferase-like 2 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1705.1.A1_at	A	A1TS	POPTR_0011s13830	POPTR_0011s13830 (11)	scaffold_11:16464091-16464589(+) (11)	NA	P09607	Pectinesterase 2.1	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g047030.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.1706.1.A1_a_at	A	A1TS	POPTR_0007s12560	POPTR_0007s12560 (11)	scaffold_7:12850777-12851163(+) (11)	NA	Q9M065	"Pentatricopeptide repeat-containing protein At4g36680, mitochondrial"	AT4G36680.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g42210.1	"membrane-associated salt-inducible protein like, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1708.1.A1_at	A	A1TS	POPTR_0004s00560	POPTR_0004s00560 (11)	scaffold_4:213048-213182(+) (11)	NA	NA	NA	AT4G22190.1	unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). 	LOC_Os11g30430.1	expressed protein	Medtr2g029070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1711.1.A1_a_at	A	A1TS	POPTR_0008s13630	POPTR_0008s13630 (11)	scaffold_8:8972289-8973163(-) (11)	NA	Q8C1Y8	Vacuolar fusion protein CCZ1 homolog	AT1G16020.1	Protein of unknown function (DUF1712) 	LOC_Os08g33076.1	"myrosinase precursor, putative, expressed"	Medtr4g156530.1	"myrosinase precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1712.1.A1_at	A	A1TS	POPTR_0004s19420	POPTR_0004s19420 (10)	scaffold_4:19263847-19265487(+) (10)	NA	O23006	LysM domain-containing GPI-anchored protein 2	AT2G17120.1	lysm domain GPI-anchored protein 2 precursor 	LOC_Os09g37600.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	AC235671_7.1	Peptidoglycan-binding LysM AC235671.2 31615-27432 E EGN_Mt090430 200	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.1713.1.A1_at	A	A1TS	POPTR_0014s07180	POPTR_0014s07180 (10)	scaffold_14:5428319-5428457(-) (10)	NA	Q9ZPH9	Probable methyltransferase PMT15	AT4G00750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1714.1.A1_a_at	A	A1TS	POPTR_0014s11300	POPTR_0014s11300 (11)	scaffold_14:8404904-8405035(-) (11)	NA	Q93W77	"NifU-like protein 1, chloroplastic"	AT4G01940.1	NFU domain protein 1 	LOC_Os03g20010.1	"nifU, putative, expressed"	Medtr7g133310.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
Ptp.1717.1.A1_at	A	A1TS	POPTR_0011s11720	POPTR_0011s11720 (9)	scaffold_11:14520843-14521373(+) (10)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT5G53900.2	Serine/threonine-protein kinase WNK (With No Lysine)-related 	LOC_Os11g25920.1	"transcription factor-related, putative, expressed"	Medtr1g023870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.172.1.S1_s_at	A	A1TS	POPTR_0009s06860	POPTR_0009s06860 (11)	scaffold_9:6547499-6548768(+) (11)	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr6g093440.1	Ribosomal protein L31e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1721.1.S1_at	A	A1TS	POPTR_0008s14360	POPTR_0008s14360 (11)	scaffold_8:9523258-9523531(+) (11)	NA	Q8L799	Inositol oxygenase 1	AT1G14520.2	myo-inositol oxygenase 1 	LOC_Os06g36560.2	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
Ptp.1721.1.S1_s_at	A	A1TS	POPTR_0008s14360	POPTR_0008s14360 (11)	scaffold_8:9523526-9524173(+) (11)	NA	Q8L799	Inositol oxygenase 1	AT1G14520.2	myo-inositol oxygenase 1 	LOC_Os06g36560.2	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
Ptp.1723.1.A1_s_at	A	A1TS	POPTR_0015s07200	POPTR_0015s07200 (11)	scaffold_15:8347937-8348356(-) (11)	NA	Q9FLQ7	Formin-like protein 20	AT5G07740.1	actin binding 	LOC_Os07g40510.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g026810.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1724.1.A1_s_at	A	A1TS	POPTR_0018s03740	POPTR_0018s03740 (11)	scaffold_18:3186943-3187955(-) (11)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT5G24870.2	RING/U-box superfamily protein 	LOC_Os06g48040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g133350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1726.1.S1_a_at	A	A1MS	POPTR_0002s11950	POPTR_0002s11950 (11)	scaffold_2:8849979-8850232(+) (11)	NA	Q9FHS6	F-box/kelch-repeat protein At5g43190	AT5G43190.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g57290.1	"OsFBX153 - F-box domain containing protein, expressed"	Medtr1g023250.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1727.1.A1_s_at	A	A1TS	POPTR_0010s11630	POPTR_0010s11630 (11)	scaffold_10:11814163-11815932(-) (11)	NA	Q8LF21	Dynamin-related protein 1C	AT1G14830.1	DYNAMIN-like 1C 	LOC_Os03g50520.1	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.1729.1.A1_at	A	A1MS	POPTR_0002s20740	POPTR_0002s20740 (11)	scaffold_2:16826253-16828514(-) (11)	NA	Q505J9	ATPase family AAA domain-containing protein 1	AT1G02890.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr1g108580.1	"Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central region; SMAD/FHA "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1734.2.A1_s_at	A	A1TS	POPTR_0018s12420	POPTR_0018s12420 (11)	scaffold_18:12910442-12910540(+) (11)	NA	Q96FX7	tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A	AT5G14600.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g25360.1	"tRNA methyltransferase complex GCD14 subunit, putative, expressed"	Medtr2g018150.1	tRNA methyltransferase complex GCD14 subunit 	GO:0044281|small molecule metabolic process||GO:0030488|tRNA methylation||GO:0044260|cellular macromolecule metabolic process	GO:0016429|tRNA (adenine-N1-)-methyltransferase activity	NA
Ptp.1735.1.S1_at	A	A1TS	POPTR_0002s13900	POPTR_0002s13900 (11)	scaffold_2:10308821-10310566(-) (11)	NA	Q9QZR0	E3 ubiquitin-protein ligase RNF25	AT3G60300.1	RWD domain-containing protein 	LOC_Os11g35870.1	"RWD domain containing protein, expressed"	Medtr5g027310.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1738.1.S1_s_at	A	A1TS	POPTR_0012s00670	POPTR_0012s00670 (11)	scaffold_12:370045-370564(-) (11)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.1739.1.A1_at	A	A1TS	POPTR_0010s00770	POPTR_0010s00770 (11)	scaffold_10:483481-483897(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G16850.1	Pectin lyase-like superfamily protein 	LOC_Os11g43750.1	"polygalacturonase, putative, expressed"	Medtr8g138460.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.174.1.S1_s_at	A	A1TS	POPTR_0003s15800	POPTR_0003s15800 (11)	scaffold_3:15495045-15495240(-) (11)	NA	Q41542	Probable xyloglucan endotransglucosylase/hydrolase	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099560.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.1743.1.A1_a_at	A	A1TS	POPTR_0002s19960	POPTR_0002s19960 (11)	scaffold_2:15887159-15888406(-) (11)	NA	Q8KPU9	Arginyl-tRNA synthetase	AT4G26300.1	"Arginyl-tRNA synthetase, class Ic "	LOC_Os05g07030.1	"arginyl-tRNA synthetase, putative, expressed"	Medtr3g128230.1	DALR anticodon binding; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006420|arginyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004814|arginine-tRNA ligase activity	GO:0005737|cytoplasm
Ptp.1746.1.A1_at	A	A1TS	POPTR_0013s06350	POPTR_0013s06350 (11)	scaffold_13:4897734-4898214(+) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT5G17790.1	zinc finger (Ran-binding) family protein 	LOC_Os01g59980.1	"zinc finger family protein, putative, expressed"	Medtr7g103850.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1750.1.S1_at	A	A1TS	POPTR_0001s02820	POPTR_0001s02820 (11)	scaffold_1:2230022-2231235(-) (11)	NA	Q40546	"Pyruvate kinase isozyme G, chloroplastic"	AT1G32440.1	plastidial pyruvate kinase 3 	LOC_Os10g42100.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.1751.2.A1_at	A	A1TS	POPTR_0002s13960	POPTR_0002s13960 (9)	scaffold_2:10353951-10356039(+) (9)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.1751.2.A1_s_at	A	A1TS	POPTR_0002s13960	POPTR_0002s13960 (9)	scaffold_2:10355194-10355939(+) (9)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.1752.2.A1_s_at	A	A1TS	POPTR_0007s00290	POPTR_0007s00290 (11)	scaffold_7:76195-76824(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1753.1.A1_s_at	A	A1TS	POPTR_0005s21850	POPTR_0005s21850 (11)	scaffold_5:20910446-20910919(-) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G09810.1	Nucleotide-sugar transporter family protein 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr1g124720.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1754.1.A1_s_at	A	A1TS	POPTR_0015s05690	POPTR_0015s05690 (11)	scaffold_15:6040644-6040698(-) (11)	NA	NA	NA	AT5G52870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g12640.2	expressed protein	Medtr1g126380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1755.1.S1_at	A	A1TS	POPTR_0004s14080	POPTR_0004s14080 (9)	scaffold_4:14566197-14566279(-) (9)	NA	Q38772	Cell division control protein 2 homolog A	AT3G48750.1	cell division control 2 	LOC_Os03g02680.2	"cyclin-dependent kinase A-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1757.1.A1_at	A	A1TS	POPTR_0010s14010	POPTR_0010s14010 (9)	scaffold_10:13707731-13708038(-) (9)	NA	Q9S7Y1	Transcription factor bHLH30	AT1G68810.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr1g118050.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.1758.1.A1_at	A	A1TS	POPTR_0008s19180	POPTR_0008s19180 (10)	scaffold_8:13147686-13147970(+) (10)	NA	Q9BXS5	AP-1 complex subunit mu-1	AT1G60780.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os01g50770.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g034870.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.1759.1.A1_at	A	A1TS	POPTR_0010s16310	POPTR_0010s16310 (10)	scaffold_10:15284154-15286924(+) (10)	NA	Q55FJ0	Probable inactive serine/threonine-protein kinase lvsG	AT5G18525.1	protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases 	LOC_Os01g22390.2	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.176.2.S1_a_at	A	A1TS	POPTR_0005s07380	POPTR_0005s07380 (11)	scaffold_5:5042115-5042766(+) (11)	NA	Q9M3V8	40S ribosomal protein S6	AT5G10360.1	Ribosomal protein S6e 	LOC_Os03g27260.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1762.1.A1_at	A	A1TS	POPTR_0001s45250	POPTR_0001s45250 (11)	scaffold_1:45755796-45756194(-) (11)	NA	Q84WP6	NAC domain-containing protein 43	AT2G46770.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g02300.1	"no apical meristem protein, putative, expressed"	Medtr4g041220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.1767.1.A1_s_at	A	A1TS	POPTR_0001s25500	POPTR_0001s25500 (11)	scaffold_1:24598930-24600150(+) (11)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT5G58970.1	uncoupling protein 2 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1768.1.A1_at	A	A1TS	POPTR_0002s13350	POPTR_0002s13350 (10)	scaffold_2:9909389-9910082(-) (10)	NA	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570	AT1G13570.1	F-box/RNI-like superfamily protein 	LOC_Os02g33400.1	"OsFBL9 - F-box domain and LRR containing protein, expressed"	Medtr1g025860.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1769.1.S1_at	A	A1TS	POPTR_0019s11500	POPTR_0019s11500 (10)	scaffold_19:12763912-12764855(+) (10)	NA	O78458	Uncharacterized protein ycf37	AT1G22700.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g32300.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1770.1.A1_at	A	A1TS	POPTR_0002s24710	POPTR_0002s24710 (11)	scaffold_2:21997637-21998147(-) (11)	NA	NA	NA	AT3G07210.1	unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). 	LOC_Os01g68830.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1771.1.A1_s_at	A	A1TS	POPTR_0012s12420	POPTR_0012s12420 (11)	scaffold_12:12754071-12754518(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1773.1.A1_at	A	A1TS	POPTR_0019s13500	POPTR_0019s13500 (11)	scaffold_19:14417634-14418401(+) (11)	NA	Q9SKT3	Secretory carrier-associated membrane protein 1	AT2G20840.1	Secretory carrier membrane protein (SCAMP) family protein 	LOC_Os07g37740.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
Ptp.1775.1.S1_at	A	A1TS	POPTR_0005s06280	POPTR_0005s06280 (11)	scaffold_5:4129719-4129987(-) (11)	NA	O15488	Glycogenin-2	AT3G18660.2	plant glycogenin-like starch initiation protein 1 	LOC_Os01g65780.2	"glycosyl transferase, putative, expressed"	Medtr3g143690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1777.1.S1_at	A	A1TS	POPTR_0005s22560	POPTR_0005s22560 (11)	scaffold_5:21478065-21478601(+) (11)	NA	Q9UP83	Conserved oligomeric Golgi complex subunit 5	AT1G67930.1	Golgi transport complex protein-related 	LOC_Os05g31490.1	"golgi transport complex protein-related, putative, expressed"	Medtr5g098500.1	"Golgi transport complex protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1779.1.S1_at	A	A1TS	POPTR_0011s09660	POPTR_0011s09660 (9)	scaffold_11:12051960-12053009(+) (9)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT5G55180.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1780.1.S1_at	A	A1TS	POPTR_0001s12940	POPTR_0001s12940 (11)	scaffold_1:10033218-10033662(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT1G27440.1	Exostosin family protein 	LOC_Os01g70200.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.1786.1.A1_at	A	A1TS	POPTR_0005s06180	POPTR_0005s06180 (9)	scaffold_5:4060793-4061221(+) (9)	NA	Q10058	UPF0673 membrane protein C1F5.03c	AT5G67290.1	FAD-dependent oxidoreductase family protein 	LOC_Os07g06080.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr8g087210.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1787.1.S1_s_at	A	A1TS	POPTR_0009s08850	POPTR_0009s08850 (11)	scaffold_9:7992385-7992870(-) (11)	NA	P33629	Tubulin alpha chain	AT1G50010.1	tubulin alpha-2 chain 	LOC_Os11g14220.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.1788.1.A1_at	A	A1TS	POPTR_0017s02010	POPTR_0017s02010 (9)	scaffold_17:1476014-1476444(+) (9)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT1G65920.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os04g49430.1	"ZR1 protein, putative"	Medtr3g086740.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.179.1.A1_at	A	A1TS	POPTR_0001s40800	POPTR_0001s40800 (10)	scaffold_1:40402987-40403299(-) (11)	NA	O61122	Serine/threonine-protein kinase svkA	AT3G15220.1	Protein kinase superfamily protein 	LOC_Os07g32400.1	"STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.179.2.S1_s_at	A	A1TS	POPTR_0001s40800	POPTR_0001s40800 (11)	scaffold_1:40406015-40406935(-) (11)	POPTR_0011s11710 (6)	O61122	Serine/threonine-protein kinase svkA	AT3G15220.1	Protein kinase superfamily protein 	LOC_Os07g32400.1	"STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1790.1.S1_at	A	A1TS	POPTR_0002s05610	POPTR_0002s05610 (11)	scaffold_2:3683467-3684056(+) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT2G43040.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os12g37780.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr5g026970.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1791.1.A1_at	A	A1TS	POPTR_0001s21670	POPTR_0001s21670 (11)	scaffold_1:20222599-20222822(-) (11)	NA	Q8BKU8	Transmembrane protein 87B	AT2G01070.1	Lung seven transmembrane receptor family protein 	LOC_Os11g34360.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr2g007860.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
Ptp.1794.1.S1_at	A	A1TS	POPTR_0010s19570	POPTR_0010s19570 (11)	scaffold_10:17462175-17463489(+) (11)	POPTR_0008s06890 (6)	Q9P6P3	Serine/threonine-protein kinase ppk15	AT2G40120.1	Protein kinase superfamily protein 	LOC_Os01g61620.1	"protein kinase family protein, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1795.1.A1_at	A	A1TS	POPTR_0013s12990	POPTR_0013s12990 (11)	scaffold_13:13575691-13577666(+) (11)	NA	Q9UUC8	"60S ribosomal protein L51, mitochondrial"	AT3G59650.1	mitochondrial ribosomal protein L51/S25/CI-B8 family protein 	LOC_Os03g10930.2	"ribosomal protein L51, putative, expressed"	Medtr8g026240.1	Mitochondrial ribosome 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1797.2.A1_s_at	A	A1TS	POPTR_0007s10200	POPTR_0007s10200 (11)	scaffold_7:9955365-9955407(-) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT4G37470.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g32270.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g099190.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.180.1.S1_s_at	A	A1TS	POPTR_0008s07270	POPTR_0008s07270 (11)	scaffold_8:4431290-4431662(-) (11)	NA	Q8H1T3	"Ferritin-2, chloroplastic"	AT3G11050.1	ferritin 2 	LOC_Os12g01530.2	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr5g090670.1	Rubrerythrin; Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
Ptp.1800.1.A1_at	A	A1TS	POPTR_0003s15630	POPTR_0003s15630 (11)	scaffold_3:15369104-15371482(-) (11)	NA	O96623	Actin-related protein 2/3 complex subunit 2	AT1G30825.1	"Arp2/3 complex, 34 kD subunit p34-Arc "	LOC_Os01g46580.1	"actin-related protein 2/3 complex subunit 2, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
Ptp.1801.1.A1_at	A	A1TS	POPTR_0010s06200	POPTR_0010s06200 (11)	scaffold_10:7615162-7615579(+) (11)	NA	NA	NA	AT1G24480.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g02600.1	"methyltransferase domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1802.1.A1_s_at	A	A1TS	POPTR_0015s05180	POPTR_0015s05180 (11)	scaffold_15:5536424-5536572(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G01940.1	C2H2-like zinc finger protein 	LOC_Os09g27650.2	"ZOS9-14 - C2H2 zinc finger protein, expressed"	Medtr1g079070.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1805.1.A1_s_at	A	A1TS	POPTR_0003s16080	POPTR_0003s16080 (11)	scaffold_3:15692464-15692886(+) (11)	NA	Q8VYZ0	E3 ubiquitin-protein ligase ORTHRUS 2	AT1G57820.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01230.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g159770.1	"Zinc finger, RING-type; SRA-YDG; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1806.1.S1_s_at	A	A1TS	POPTR_0006s08630	POPTR_0006s08630 (11)	scaffold_6:6312264-6312762(-) (11)	NA	O80932	Expansin-A3	AT2G37640.1	Barwin-like endoglucanases superfamily protein 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1807.1.S1_at	A	A1TS	POPTR_0014s07900	POPTR_0014s07900 (11)	scaffold_14:5866523-5868132(-) (11)	NA	P58137	Acyl-coenzyme A thioesterase 8	AT1G01710.1	Acyl-CoA thioesterase family protein 	LOC_Os04g47120.1	"acyl-CoA thioesterase 2, putative, expressed"	NA	NA	GO:0006637|acyl-CoA metabolic process	GO:0016291|acyl-CoA thioesterase activity	NA
Ptp.1810.1.A1_at	A	A1TS	POPTR_0004s15070	POPTR_0004s15070 (9)	scaffold_4:15744601-15745358(+) (9)	NA	NA	NA	AT2G15730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr3g148170.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1816.1.A1_at	A	A1TS	POPTR_0001s29620	POPTR_0001s29620 (11)	scaffold_1:28285597-28286449(+) (11)	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
Ptp.1818.1.A1_at	A	A1TS	POPTR_0001s18590	POPTR_0001s18590 (10)	scaffold_1:15630281-15631706(+) (10)	NA	Q2V4B9	Probable plastidic glucose transporter 3	AT1G79820.2	Major facilitator superfamily protein 	LOC_Os02g17500.3	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.1819.1.S1_at	A	A1TS	POPTR_0001s00860	POPTR_0001s00860 (11)	scaffold_1:712716-713734(-) (11)	NA	Q0WWQ1	Autophagy-related protein 3	AT5G61500.1	autophagy 3 (APG3) 	LOC_Os01g10290.2	"autophagy-related protein 3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1820.1.A1_a_at	A	A1TS	POPTR_0013s00280	POPTR_0013s00280 (11)	scaffold_13:67473-67616(+) (11)	NA	Q6P988	Protein notum homolog	AT3G05910.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134700.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1822.1.A1_at	A	A1TS	POPTR_0010s13130	POPTR_0010s13130 (11)	scaffold_10:13016501-13016783(+) (11)	NA	Q9M9C6	Probable protein phosphatase 2C 15	AT1G68410.2	Protein phosphatase 2C family protein 	LOC_Os07g49040.1	"protein phosphotase protein, putative, expressed"	Medtr1g140400.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1824.1.A1_at	A	A1TS	POPTR_0008s08580	POPTR_0008s08580 (10)	scaffold_8:5318464-5318763(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1825.1.A1_s_at	A	A1TS	POPTR_0011s13920	POPTR_0011s13920 (11)	scaffold_11:16543300-16545279(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.1826.1.S1_at	A	A1TS	POPTR_0006s15350	POPTR_0006s15350 (11)	scaffold_6:12715030-12715481(+) (11)	NA	O82201	AP-4 complex subunit sigma	AT2G19790.1	SNARE-like superfamily protein 	LOC_Os08g30480.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr7g118420.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.1828.1.A1_at	A	A1TS	POPTR_0006s18370	POPTR_0006s18370 (11)	scaffold_6:16765377-16765611(+) (11)	NA	NA	NA	AT5G57460.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to 166 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). "	LOC_Os08g14620.1	expressed protein	Medtr8g128860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1829.1.S1_s_at	A	A1TS	POPTR_0004s00900	POPTR_0004s00900 (9)	scaffold_4:430913-430945(+) (9)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.1832.1.A1_at	A	A1MS	POPTR_0006s03340	POPTR_0006s03340 (10)	scaffold_6:2119970-2120387(-) (10)	NA	Q940D0	Two-component response regulator ARR1	AT3G10760.1	Homeodomain-like superfamily protein 	LOC_Os05g34110.1	"homeodomain-related, putative, expressed"	Medtr7g105990.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1833.1.A1_at	A	A1TS	POPTR_0005s17150	POPTR_0005s17150 (11)	scaffold_5:14276342-14276844(-) (11)	NA	Q9SA00	5'-adenylylsulfate reductase-like 4	AT1G34780.1	APR-like 4 	LOC_Os02g51850.1	"OsAPRL3  adenosine 5'-phosphosulfate reductase-like OsAPRL3, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1834.1.A1_at	A	A1TS	POPTR_0003s01380	POPTR_0003s01380 (11)	scaffold_3:1210896-1211139(-) (11)	NA	P54493	Rhomboid protease gluP	AT1G25290.2	RHOMBOID-like protein 10 	LOC_Os09g28100.1	"OsRhmbd15 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
Ptp.1834.1.A1_s_at	A	A1TS	POPTR_0003s01380	POPTR_0003s01380 (11)	scaffold_3:1211160-1211751(-) (11)	NA	P54493	Rhomboid protease gluP	AT1G25290.2	RHOMBOID-like protein 10 	LOC_Os09g28100.1	"OsRhmbd15 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
Ptp.1834.2.A1_at	A	A1MS	POPTR_0003s01380	POPTR_0003s01380 (11)	scaffold_3:1212039-1212352(-) (11)	NA	P54493	Rhomboid protease gluP	AT1G25290.2	RHOMBOID-like protein 10 	LOC_Os09g28100.1	"OsRhmbd15 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
Ptp.1835.1.A1_at	A	A1TS	POPTR_0001s28920	POPTR_0001s28920 (9)	scaffold_1:27661379-27661411(+) (9)	NA	P10566	Mitochondrial RNA-splicing protein MRS3	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1835.1.A1_s_at	A	A1TS	POPTR_0001s28920	POPTR_0001s28920 (11)	scaffold_1:27661272-27661671(+) (11)	NA	P10566	Mitochondrial RNA-splicing protein MRS3	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1837.1.A1_s_at	A	A1TS	POPTR_0001s26460	POPTR_0001s26460 (11)	scaffold_1:25487414-25487787(+) (11)	NA	NA	NA	AT3G20920.1	translocation protein-related 	LOC_Os02g23890.1	"protein transporter, putative, expressed"	Medtr3g080660.1	Translocation protein Sec62 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1837.2.S1_at	A	A1TS	POPTR_0001s26460	POPTR_0001s26460 (11)	scaffold_1:25482088-25483448(+) (11)	NA	NA	NA	AT3G20920.1	translocation protein-related 	LOC_Os02g23890.1	"protein transporter, putative, expressed"	Medtr3g080660.1	Translocation protein Sec62 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1838.2.A1_a_at	A	A1TS	POPTR_0015s00310	POPTR_0015s00310 (10)	scaffold_15:147053-147486(-) (10)	NA	P28493	Pathogenesis-related protein 5	AT5G24620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g32280.1	"thaumatin, putative"	Medtr5g077390.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1839.1.A1_s_at	A	A1TS	POPTR_0008s19920	POPTR_0008s19920 (11)	scaffold_8:13768008-13768377(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.184.1.A1_at	A	A1TS	POPTR_0015s01480	POPTR_0015s01480 (10)	scaffold_15:909886-910290(-) (10)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G49260.2	IQ-domain 21 	LOC_Os03g44610.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g123810.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1842.1.A1_at	A	A1TS	POPTR_0008s23000	POPTR_0008s23000 (9)	scaffold_8:18201325-18201438(+) (9)	NA	Q9FJ17	Protein DEHYDRATION-INDUCED 19 homolog 7	AT5G49230.1	Drought-responsive family protein 	LOC_Os05g28980.1	"drought induced 19 protein, putative, expressed"	Medtr1g100290.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1845.1.A1_at	A	A1TS	POPTR_0001s47010	POPTR_0001s47010 (11)	scaffold_1:47340233-47341113(-) (11)	NA	Q7ZWM6	Obg-like ATPase 1	AT1G30580.1	GTP binding 	LOC_Os08g09940.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1846.1.S1_at	A	A1TS	POPTR_0009s15860	POPTR_0009s15860 (9)	scaffold_9:12171194-12171282(-) (9)//scaffold_9:12180625-12180713(-) (9)	NA	O81081	Laccase-2	AT2G29130.1	laccase 2 	LOC_Os01g62490.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1846.1.S1_s_at	A	A1TS	POPTR_0009s03940	POPTR_0009s03940 (11)	scaffold_9:4524386-4524805(-) (11)	POPTR_0009s15860 (8)//POPTR_0001s18500 (8)//POPTR_0009s15840 (8)	O81081	Laccase-2	AT2G29130.1	laccase 2 	LOC_Os01g62490.1	"laccase precursor protein, putative, expressed"	Medtr7g067600.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1847.1.A1_s_at	A	A2TS	POPTR_0005s18960	POPTR_0007s09950 (11)//POPTR_0005s18960 (11)	scaffold_5:17458650-17459083(+) (11)//scaffold_7:9507614-9508060(-) (11)	NA	P28523	Casein kinase II subunit alpha	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1848.2.A1_a_at	A	A1TS	POPTR_0006s28190	POPTR_0006s28190 (9)	scaffold_6:25966938-25967450(-) (11)	NA	Q9LEW0	Ubiquitin carboxyl-terminal hydrolase 22	AT5G10790.1	ubiquitin-specific protease 22 	LOC_Os04g55360.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr1g017060.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
Ptp.1848.3.S1_at	A	A1MA	POPTR_0006s28190	POPTR_0006s28190 (9)	scaffold_6:25967402-25967550(+) (9)	NA	Q9LEW0	Ubiquitin carboxyl-terminal hydrolase 22	AT5G10790.1	ubiquitin-specific protease 22 	LOC_Os04g55360.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr1g017060.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
Ptp.1849.1.A1_at	A	A1MA	POPTR_0008s08570	POPTR_0008s08570 (10)	scaffold_8:5317168-5317515(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g044030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.185.1.A1_s_at	A	A1TS	POPTR_0006s02270	POPTR_0006s02270 (11)	scaffold_6:1485995-1486288(-) (11)	NA	NA	NA	AT3G22270.1	Topoisomerase II-associated protein PAT1 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1850.1.A1_at	A	A1TS	POPTR_0004s14200	POPTR_0004s14200 (11)	scaffold_4:14686595-14687060(+) (11)	NA	Q6IDS6	E3 ubiquitin-protein ligase makorin	AT3G08505.1	zinc finger (CCCH-type/C3HC4-type RING finger) family protein 	LOC_Os06g21390.2	"Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed"	Medtr3g030250.1	"Zinc finger, CCCH-type; Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.1851.1.S1_s_at	A	A1TS	POPTR_0016s06950	POPTR_0016s06950 (10)	scaffold_16:4743596-4743629(+) (10)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr8g081920.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1851.1.S1_x_at	A	A1TS	POPTR_0016s06950	POPTR_0016s06950 (11)	scaffold_16:4743550-4744071(+) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr8g081920.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1854.1.S1_s_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41431877-41432427(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1854.2.S1_at	A	A1MS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41433089-41433244(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1854.2.S1_s_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41432484-41433037(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1856.1.A1_at	A	A1TS	POPTR_0006s00270	POPTR_0006s00270 (10)	scaffold_6:45640-46174(-) (10)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr2g033600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1857.1.S1_at	A	A1TS	POPTR_0008s08280	POPTR_0008s08280 (9)	scaffold_8:5151806-5152150(-) (9)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT2G40980.1	Protein kinase superfamily protein 	LOC_Os02g29890.1	expressed protein	Medtr7g104330.1	"Tyrosine protein kinase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1858.1.S1_at	A	A1TS	POPTR_0014s01690	POPTR_0014s01690 (10)	scaffold_14:1580920-1581233(+) (10)	NA	Q37145	"Calcium-transporting ATPase 1, chloroplastic"	AT1G27770.1	autoinhibited Ca2+-ATPase 1 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.186.1.A1_s_at	A	A1TS	POPTR_0019s07570	POPTR_0019s07570 (11)	scaffold_19:8624604-8624884(-) (11)	NA	NA	NA	AT2G40480.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr5g091420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1860.1.A1_at	A	A1TS	POPTR_0001s31650	POPTR_0001s31650 (11)	scaffold_1:30022456-30022836(-) (11)	NA	NA	NA	AT3G18800.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g59050.1	hypothetical protein	Medtr3g144210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1861.1.S1_x_at	A	A3TS	POPTR_0010s22620	POPTR_0010s22620 (11)//POPTR_0010s22560 (10)//POPTR_0966s00200 (10)	scaffold_10:19433848-19434345(+) (10)//scaffold_10:19456195-19456707(-) (11)//scaffold_966:1552-8138(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.1861.4.A1_s_at	A	A1TS	POPTR_0966s00200	POPTR_0966s00200 (11)	scaffold_966:2833-3067(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.1863.1.S1_s_at	A	A1TS	POPTR_0015s12790	POPTR_0015s12790 (11)	scaffold_15:13010172-13010469(-) (11)	NA	Q9FEF8	rRNA 2'-O-methyltransferase fibrillarin 1	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.1863.2.S1_at	A	A1MS	POPTR_0015s12790	POPTR_0015s12790 (10)	scaffold_15:13010339-13010597(-) (10)	NA	Q9FEF8	rRNA 2'-O-methyltransferase fibrillarin 1	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.1865.1.A1_at	A	A1TS	POPTR_0014s05810	POPTR_0014s05810 (11)	scaffold_14:4358100-4359241(-) (11)	NA	P38389	Protein transport protein Sec61 subunit beta	AT3G60540.2	"Preprotein translocase Sec, Sec61-beta subunit protein "	LOC_Os12g07490.1	"protein transport protein Sec61 subunit beta, putative, expressed"	Medtr4g134690.1	Sec61beta 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1868.1.A1_s_at	A	A1TS	POPTR_0010s02580	POPTR_0010s02580 (11)	scaffold_10:3007158-3008683(-) (11)	NA	O75506	Heat shock factor-binding protein 1	AT4G15802.1	heat shock factor binding protein 	LOC_Os09g20830.2	"heat shock factor-binding protein 1, putative, expressed"	Medtr7g130390.1	Heat shock factor binding 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1869.2.S1_s_at	A	A1TS	POPTR_0017s14280	POPTR_0017s14280 (11)	scaffold_17:14398494-14400526(+) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr8g140130.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
Ptp.1872.1.S1_at	A	A1TS	POPTR_0003s16270	POPTR_0003s16270 (9)	scaffold_3:15849019-15849386(-) (9)	NA	NA	NA	AT1G03080.1	kinase interacting (KIP1-like) family protein 	LOC_Os03g43684.1	"KIP1, putative, expressed"	Medtr5g033430.1	KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1873.1.S1_at	A	A1TS	POPTR_0012s11250	POPTR_0012s11250 (11)	scaffold_12:11778263-11778907(+) (11)	NA	Q8BMD8	Calcium-binding mitochondrial carrier protein SCaMC-1	AT5G51050.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40200.2	"calcium-binding mitochondrial carrier CBG00135, putative, expressed"	Medtr3g151470.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1876.2.S1_a_at	A	A1TS	POPTR_0008s04200	POPTR_0008s04200 (11)	scaffold_8:2359701-2359928(+) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1877.1.A1_s_at	A	A1TS	POPTR_0011s14710	POPTR_0011s14710 (11)	scaffold_11:17018210-17018731(+) (11)	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1878.2.A1_a_at	A	A1TS	POPTR_0001s43060	POPTR_0001s43060 (11)	scaffold_1:43139453-43139786(+) (11)	NA	Q9N1Q0	Small nuclear ribonucleoprotein-associated protein B'	AT5G44500.2	Small nuclear ribonucleoprotein family protein 	LOC_Os07g07220.1	"LSM domain containing protein, expressed"	Medtr5g099340.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1879.1.S1_s_at	A	A1TS	POPTR_0012s03970	POPTR_0012s03970 (10)	scaffold_12:3185743-3187916(-) (11)	NA	NA	NA	AT1G48440.1	B-cell receptor-associated 31-like 	LOC_Os03g13750.1	"erwinia induced protein 2, putative, expressed"	Medtr6g080520.1	"T1N15.5, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.188.1.A1_at	A	A1TS	POPTR_0014s13120	POPTR_0014s13120 (11)	scaffold_14:9640752-9643830(-) (11)	NA	Q9LYC2	NPL4-like protein 1	AT3G63000.1	NPL4-like protein 1 	LOC_Os01g27990.1	"NPL4, putative, expressed"	AC235488_3.1	Ubiquitin; NPL4 AC235488.1 4598-10630 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1880.1.A1_at	A	A1TS	POPTR_0006s05380	POPTR_0006s05380 (10)	scaffold_6:3804257-3804815(+) (10)	NA	Q9XFW4	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	AT3G57650.1	lysophosphatidyl acyltransferase 2 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.1881.2.S1_s_at	A	A1TS	POPTR_0017s08610	POPTR_0017s08610 (11)	scaffold_17:7234086-7234243(+) (11)	NA	Q01781	Adenosylhomocysteinase	AT4G13940.1	S-adenosyl-L-homocysteine hydrolase 	LOC_Os11g26850.2	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr3g104810.1	S-adenosyl-L-homocysteine hydrolase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004013|adenosylhomocysteinase activity	NA
Ptp.1886.1.S1_at	A	A1TS	POPTR_0004s16330	POPTR_0004s16330 (9)	scaffold_4:16829450-16830502(+) (11)	NA	Q8GY61	Transcription factor bHLH63	AT4G34530.1	cryptochrome-interacting basic-helix-loop-helix 1 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr3g162340.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.1887.1.S1_at	A	A1TS	POPTR_0002s18230	POPTR_0002s18230 (11)	scaffold_2:14163756-14164634(+) (11)	NA	Q43187	Soluble inorganic pyrophosphatase	AT1G01050.1	pyrophosphorylase 1 	LOC_Os04g59040.1	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr7g146210.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.1888.1.S1_s_at	A	A1TS	POPTR_0002s22220	POPTR_0002s22220 (11)	scaffold_2:18890527-18891024(-) (11)	NA	P27518	"Chlorophyll a-b binding protein 151, chloroplastic"	AT2G05070.1	photosystem II light harvesting complex gene 2.2 	LOC_Os03g39610.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g104980.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1890.1.S1_at	A	A1TS	POPTR_0003s04150	POPTR_0003s04150 (11)	scaffold_3:4843131-4843490(+) (11)	NA	P41381	Eukaryotic initiation factor 4A-8	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os06g48750.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1892.1.S1_x_at	A	A1TS	POPTR_0010s16510	POPTR_0010s16510 (11)	scaffold_10:15445002-15445226(-) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1895.1.S1_at	A	A1TS	POPTR_0002s11250	POPTR_0002s11250 (9)	scaffold_2:8327490-8327869(+) (9)	NA	Q9ZRR5	Tubulin alpha-3 chain	AT1G50010.1	tubulin alpha-2 chain 	LOC_Os03g51600.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr8g102250.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.1897.1.S1_a_at	A	A1TS	POPTR_0003s15140	POPTR_0003s15140 (11)	scaffold_3:15006912-15007192(+) (11)	NA	Q38890	Endoglucanase 25	AT5G49720.1	glycosyl hydrolase 9A1 	LOC_Os03g21210.1	"endoglucanase, putative, expressed"	Medtr2g034060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1898.1.S1_at	A	A1TS	POPTR_0019s09140	POPTR_0019s09140 (11)	scaffold_19:10697402-10698338(-) (11)	NA	Q9XF89	"Chlorophyll a-b binding protein CP26, chloroplastic"	AT4G10340.1	light harvesting complex of photosystem II 5 	LOC_Os11g13890.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g070180.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.19.1.S1_at	A	A1TS	POPTR_0016s08710	POPTR_0016s08710 (11)	scaffold_16:6502611-6503215(-) (11)	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.19.1.S1_x_at	A	A1TS	POPTR_0016s08710	POPTR_0016s08710 (11)	scaffold_16:6502545-6503215(-) (11)	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1902.1.S1_at	A	A1TS	POPTR_0004s05020	POPTR_0004s05020 (11)	scaffold_4:3774540-3775028(+) (11)	NA	Q946Y7	Syntaxin-61	AT1G28490.1	syntaxin of plants 61 	LOC_Os01g73230.1	"syntaxin 6, putative, expressed"	Medtr5g100170.1	Syntaxin/epimorphin family 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
Ptp.1903.1.S1_x_at	A	A1TS	POPTR_0004s17610	POPTR_0004s17610 (11)	scaffold_4:17743689-17744151(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.1903.2.S1_x_at	A	A1TS	POPTR_0002s09370	POPTR_0002s09370 (11)	scaffold_2:6675657-6676704(+) (11)	NA	P33050	Pollen-specific protein C13	AT4G08685.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g22590.1	"POEI24 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	CU651566_3.1	Pollen Ole e 1 allergen and extensin CU651566.9 19800-21791 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1906.1.A1_s_at	A	A1TS	POPTR_0018s11280	POPTR_0018s11280 (11)	scaffold_18:12091279-12093234(+) (11)	NA	NA	NA	AT4G30710.1	Family of unknown function (DUF566)  	LOC_Os09g25500.1	expressed protein	Medtr8g144970.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1909.1.A1_at	A	A1TS	POPTR_0014s03200	POPTR_0014s03200 (11)	scaffold_14:2561376-2561483(-) (11)	NA	Q9SX77	"Uncharacterized protein At1g47420, mitochondrial"	AT1G47420.1	succinate dehydrogenase 5 	LOC_Os04g34100.1	expressed protein	Medtr1g024840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.191.1.A1_at	A	A1TS	POPTR_0002s24910	POPTR_0002s24910 (11)	scaffold_2:22121355-22121603(-) (11)	NA	NA	NA	AT3G07310.1	Protein of unknown function (DUF760) 	LOC_Os11g26890.2	expressed protein	Medtr8g012790.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1912.1.A1_s_at	A	A1TS	POPTR_0005s25830	POPTR_0005s25830 (11)	scaffold_5:24034788-24035165(+) (11)	NA	Q0WSY2	Filament-like plant protein 4	AT1G19835.2	Plant protein of unknown function (DUF869) 	LOC_Os03g14250.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr5g021760.1	"Protein of unknown function DUF869, plant "	GO:0016032|viral reproduction	NA	NA
Ptp.1913.1.A1_at	A	A1TS	POPTR_0001s15170	POPTR_0001s15170 (11)	scaffold_1:12000654-12001185(-) (11)	NA	Q8W4H1	GATA transcription factor 26	AT4G17570.3	GATA transcription factor 26 	LOC_Os04g46020.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g013520.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.1914.1.A1_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5419391-5419563(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
Ptp.1914.1.A1_s_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5419132-5419306(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
Ptp.1914.2.A1_a_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5419299-5419349(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
Ptp.1923.1.A1_s_at	A	A1TS	POPTR_0011s01800	POPTR_0011s01800 (11)	scaffold_11:1406365-1406699(-) (11)//scaffold_11:1616488-1616807(-) (9)	POPTR_0011s01960 (7)	NA	NA	AT4G22190.1	unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). 	LOC_Os11g30430.1	expressed protein	Medtr2g029070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1924.1.A1_at	A	A1TS	POPTR_0003s12380	POPTR_0003s12380 (11)	scaffold_3:12969249-12970002(-) (11)	NA	Q43070	UDP-glucose 4-epimerase	AT1G12780.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 1 	LOC_Os09g35800.1	"UDP-glucose 4-epimerase, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1928.1.A1_at	A	A1TS	POPTR_0018s08470	POPTR_0018s08470 (9)	scaffold_18:9411795-9412772(-) (9)	NA	Q9SMY8	F-box/LRR-repeat protein 15	AT4G33210.1	F-box family protein 	LOC_Os10g25680.1	"OsFBL52 - F-box domain and LRR containing protein, expressed"	Medtr1g019570.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.1930.1.S1_s_at	A	A1TS	POPTR_0008s09450	POPTR_0008s09450 (11)	scaffold_8:5855508-5855714(+) (11)	NA	Q9C5W6	14-3-3-like protein GF14 iota	AT1G26480.1	general regulatory factor 12 	LOC_Os02g36974.4	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.1937.1.A1_s_at	A	A1TS	POPTR_0004s23850	POPTR_0004s23850 (11)	scaffold_4:22478797-22479070(+) (11)	NA	Q91W34	UPF0420 protein C16orf58 homolog	AT5G49820.1	"Protein of unknown function, DUF647 "	LOC_Os05g34650.1	"DUF647 domain containing protein, putative, expressed"	Medtr4g106950.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.194.1.A1_s_at	A	A1TS	POPTR_0010s13060	POPTR_0010s13060 (11)	scaffold_10:12953491-12953598(-) (11)	NA	NA	NA	AT2G01260.1	Protein of unknown function (DUF789) 	LOC_Os01g33000.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1940.2.A1_at	A	A1MS	POPTR_0008s01960	POPTR_0008s01960 (9)	scaffold_8:939179-939339(+) (9)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr4g066990.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.1941.1.A1_at	A	A1TS	POPTR_0001s46000	POPTR_0001s46000 (11)	scaffold_1:46511794-46512015(-) (11)	POPTR_0011s14930 (7)	O65351	Subtilisin-like protease	AT4G10550.1	Subtilase family protein 	LOC_Os06g41880.1	"OsSub51 - Putative Subtilisin homologue, expressed"	Medtr8g086940.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1941.1.A1_s_at	A	A1TS	POPTR_0001s46000	POPTR_0001s46000 (11)	scaffold_1:46511600-46511800(-) (11)	NA	O65351	Subtilisin-like protease	AT4G10550.1	Subtilase family protein 	LOC_Os06g41880.1	"OsSub51 - Putative Subtilisin homologue, expressed"	Medtr8g086940.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1942.1.S1_s_at	A	A1TS	POPTR_0008s00270	POPTR_0008s00270 (11)	scaffold_8:59354-59761(+) (11)	NA	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1943.1.S1_at	A	A1TS	POPTR_0001s13400	POPTR_0001s13400 (11)	scaffold_1:10495533-10495737(-) (11)	NA	O35459	"Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial"	AT5G43280.1	"delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 "	LOC_Os01g70090.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr3g103380.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1944.1.S1_at	A	A1TS	POPTR_0017s02400	POPTR_0017s02400 (11)	scaffold_17:1735160-1735379(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1944.1.S1_s_at	A	A1TS	POPTR_0017s02400	POPTR_0017s02400 (9)	scaffold_17:1729309-1735630(-) (9)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1945.1.S1_s_at	A	A1TS	POPTR_0006s14030	POPTR_0006s14030 (11)	scaffold_6:11295388-11296664(-) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT1G74960.3	fatty acid biosynthesis 1 	LOC_Os07g42420.1	"3-oxoacyl-synthase, putative, expressed"	Medtr8g132860.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.195.1.S1_at	A	A1TS	POPTR_0004s16020	POPTR_0004s16020 (11)	scaffold_4:16488338-16489373(+) (11)	NA	NA	NA	AT1G11755.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os03g10080.1	expressed protein	Medtr5g007400.1	Di-trans-poly-cis-decaprenylcistransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1952.2.S1_s_at	A	A1TS	POPTR_0007s10230	POPTR_0007s10230 (11)	scaffold_7:10070672-10072644(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g099180.1	"Lysine-rich arabinogalactan protein 18 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1953.1.S1_at	A	A1TS	POPTR_0010s08430	POPTR_0010s08430 (11)	scaffold_10:9344971-9345435(+) (11)	NA	NA	NA	AT5G43460.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1954.1.S1_at	A	A1TS	POPTR_0005s09370	POPTR_0005s09370 (11)	scaffold_5:6538938-6539393(-) (11)	NA	P68209	"Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial"	AT5G08300.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1956.1.S1_at	A	A1TS	POPTR_0019s08080	POPTR_0019s08080 (11)	scaffold_19:9469294-9469382(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1956.1.S1_x_at	A	A1TS	POPTR_0019s08080	POPTR_0019s08080 (11)	scaffold_19:9469294-9471997(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1957.1.S1_at	A	A1TS	POPTR_0018s13330	POPTR_0018s13330 (11)	scaffold_18:13690649-13693082(-) (11)	NA	Q8LFQ6	Glutaredoxin-C4	AT5G20500.1	Glutaredoxin family protein 	LOC_Os06g44910.1	"OsGrx_C4 - glutaredoxin subgroup I, expressed"	Medtr2g043290.3	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.1958.1.S1_at	A	A1TS	POPTR_0010s16980	POPTR_0010s16980 (11)	scaffold_10:15756548-15756981(+) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT2G03350.1	"Protein of unknown function, DUF538 "	LOC_Os03g11210.1	"DUF538 domain containing protein, putative, expressed"	Medtr5g046080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1958.1.S1_s_at	A	A1TS	POPTR_0010s16980	POPTR_0010s16980 (11)	scaffold_10:15756518-15756954(+) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT2G03350.1	"Protein of unknown function, DUF538 "	LOC_Os03g11210.1	"DUF538 domain containing protein, putative, expressed"	Medtr5g046080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1959.1.S1_s_at	A	A1TS	POPTR_0021s00290	POPTR_0021s00290 (11)	scaffold_21:88359-89587(+) (11)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.1960.1.A1_s_at	A	A1TS	POPTR_0001s14120	POPTR_0001s14120 (9)	scaffold_1:11077455-11078374(-) (9)	NA	Q9T0H9	"UPF0016 protein 2, chloroplastic"	AT4G13590.1	Uncharacterized protein family (UPF0016) 	LOC_Os11g34180.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr5g009920.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
Ptp.1962.1.S1_s_at	A	A1TS	POPTR_0018s07370	POPTR_0018s07370 (11)	scaffold_18:7609181-7609488(-) (11)	NA	Q9SZA3	Eukaryotic translation initiation factor 3 subunit K	AT4G33250.1	eukaryotic translation initiation factor 3K 	LOC_Os03g08450.1	"eukaryotic translation initiation factor 3 subunit K, putative, expressed"	Medtr8g133200.1	SAC3/GANP; Eukaryotic translation initiation factor 3 subunit 12; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1963.1.S1_at	A	A1TS	POPTR_0002s03600	POPTR_0002s03600 (9)	scaffold_2:2241363-2241752(+) (9)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT1G47270.2	tubby like protein 6 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1965.1.S1_s_at	A	A1TS	POPTR_0004s01510	POPTR_0004s01510 (11)	scaffold_4:867559-867851(+) (11)	NA	Q9SB81	Peroxidase 42	AT4G21960.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr8g146760.2	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.1967.1.S1_at	A	A1TS	POPTR_0001s32420	POPTR_0001s32420 (11)	scaffold_1:30757173-30758512(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G04910.1	O-fucosyltransferase family protein 	LOC_Os11g29120.1	"growth regulator related protein, putative, expressed"	Medtr1g129940.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1968.1.S1_s_at	A	A1TS	POPTR_0001s38920	POPTR_0001s38920 (11)	scaffold_1:38181422-38182910(+) (11)	NA	Q8L9S1	60S ribosomal protein L18a-1	AT1G17080.1	Ribosomal protein L18ae family 	LOC_Os05g49020.1	"60S ribosomal protein L18a-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1969.1.A1_at	A	A1TS	POPTR_0009s03740	POPTR_0009s03740 (10)	scaffold_9:4356416-4356633(+) (10)	NA	Q9CQT9	Uncharacterized protein C20orf24 homolog	AT5G59410.1	Rab5-interacting family protein 	LOC_Os05g01994.1	"rab5-interacting protein like, putative, expressed"	Medtr2g116740.1	Rab5-interacting 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1970.1.S1_s_at	A	A1TS	POPTR_0002s16390	POPTR_0002s16390 (11)	scaffold_2:12264532-12265055(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G61490.3	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.1971.1.S1_s_at	A	A1TS	POPTR_0009s02590	POPTR_0009s02590 (11)	scaffold_9:3370423-3371169(+) (11)	NA	O23715	Proteasome subunit alpha type-3	AT2G27020.1	20S proteasome alpha subunit G1 	LOC_Os01g59600.2	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1972.1.A1_s_at	A	A1TS	POPTR_0004s11090	POPTR_0004s11090 (10)	scaffold_4:9685416-9688402(-) (11)	NA	NA	NA	AT5G64130.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os01g14690.6	"Lg106, putative, expressed"	Medtr2g077020.1	Lg106-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1973.1.S1_at	A	A1TS	POPTR_0003s17240	POPTR_0003s17240 (11)	scaffold_3:16659802-16662680(-) (11)	NA	Q9P0J0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	AT1G04630.1	GRIM-19 protein 	LOC_Os03g09210.1	"NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1974.1.S1_at	A	A1TS	POPTR_0001s29450	POPTR_0001s29450 (11)	scaffold_1:28122007-28122066(-) (11)	NA	Q9NX01	Thioredoxin-like protein 4B	AT3G24730.1	"mRNA splicing factor, thioredoxin-like U5 snRNP "	LOC_Os11g19220.1	"mitosis protein dim1, putative, expressed"	Medtr3g133440.1	Thioredoxin fold 	GO:0007067|mitosis	NA	GO:0005681|spliceosomal complex
Ptp.1975.1.S1_at	A	A1TS	POPTR_0005s23910	POPTR_0005s23910 (11)	scaffold_5:22612826-22615107(+) (11)	NA	Q9ZQX4	V-type proton ATPase subunit F	AT4G02620.1	vacuolar ATPase subunit F family protein 	LOC_Os02g57854.1	"vacuolar ATP synthase subunit F, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.1976.1.S1_s_at	A	A1TS	POPTR_0001s21520	POPTR_0001s21520 (11)	scaffold_1:20010026-20015934(-) (11)	NA	P43255	COP9 signalosome complex subunit 8	AT4G14110.1	"COP9 signalosome, subunit CSN8 "	LOC_Os04g34930.1	"COP9 signalosome complex subunit 8, putative, expressed"	Medtr2g007990.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1977.1.S1_at	A	A1TS	POPTR_0016s08310	POPTR_0016s08310 (10)	scaffold_16:6128874-6129377(+) (10)	NA	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	Medtr5g026910.1	Ribosomal protein L13e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1978.2.S1_s_at	A	A2TS	POPTR_0002s03530	POPTR_0002s03530 (11)//POPTR_0005s25080 (11)	scaffold_2:2197845-2199312(+) (11)//scaffold_5:23422255-23424081(-) (11)	NA	O23712	Proteasome subunit alpha type-1-B	AT1G47250.1	20S proteasome alpha subunit F2 	LOC_Os02g04100.1	"peptidase, T1 family, putative, expressed"	Medtr4g008970.1	"20S proteasome, A and B subunits "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.198.1.A1_at	A	A1TS	POPTR_0017s04660	POPTR_0017s04660 (11)	scaffold_17:3555377-3555904(-) (11)	NA	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.198.1.A1_s_at	A	A1TS	POPTR_0017s04660	POPTR_0017s04660 (11)	scaffold_17:3555534-3555756(-) (11)	NA	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1980.1.S1_s_at	A	A1TS	POPTR_0012s13610	POPTR_0012s13610 (11)	scaffold_12:13693360-13693508(+) (11)	NA	O88828	"DNA-directed RNA polymerases I, II, and III subunit RPABC2"	AT5G51940.1	RNA polymerase Rpb6 	LOC_Os03g38960.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr7g111100.1	60 kDa inner membrane insertion protein 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006351|""transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1984.1.S1_x_at	A	A1TS	POPTR_0002s05870	POPTR_0002s05870 (11)	scaffold_2:3853179-3853683(+) (11)	NA	Q9ATF5	60S ribosomal protein L18a	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1985.2.A1_s_at	A	A1TS	POPTR_0012s05470	POPTR_0012s05470 (11)	scaffold_12:5126778-5127586(+) (11)	NA	P49592	Protein Dr1 homolog	AT5G23090.1	"nuclear factor Y, subunit B13 "	LOC_Os08g29500.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g115740.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.1986.1.S1_a_at	A	A1TS	POPTR_0015s11780	POPTR_0015s11780 (11)	scaffold_15:12317988-12318352(-) (11)	NA	P41098	60S ribosomal protein L34	AT1G26880.1	Ribosomal protein L34e superfamily protein 	LOC_Os09g24690.1	"60S ribosomal protein L34, putative, expressed"	Medtr7g009550.1	Ribosomal protein L34e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1987.1.A1_at	A	A1TS	POPTR_0004s20640	POPTR_0004s20640 (10)	scaffold_4:20101935-20102975(-) (10)	NA	Q5RAZ5	Non-structural maintenance of chromosomes element 1 homolog	AT5G21140.1	embryo defective 1379 	LOC_Os12g03360.1	"EMB1379, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1989.1.S1_at	A	A1MS	POPTR_0003s20720	POPTR_0003s20720 (9)	scaffold_3:19170693-19171421(-) (9)	NA	O81635	Kinesin-4	AT1G55550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g15540.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.199.1.A1_at	A	A1TS	POPTR_0003s17720	POPTR_0003s17720 (11)	scaffold_3:17022055-17024528(+) (11)	NA	C0QTM4	30S ribosomal protein S15	AT1G80620.1	"S15/NS1, RNA-binding protein "	LOC_Os06g07996.1	ribosomal protein S15 containing protein	Medtr4g006580.1	"Ribosomal protein S15, bacterial chloroplast and mitochondrial type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1990.1.S1_a_at	A	A1TS	POPTR_0019s12210	POPTR_0019s12210 (10)	scaffold_19:13321068-13321328(+) (10)	NA	Q6Z7L8	Rac-like GTP-binding protein 7	AT1G75840.1	RAC-like GTP binding protein 5 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1991.1.S1_at	A	A1TS	POPTR_0010s20610	POPTR_0010s20610 (10)	scaffold_10:18124650-18127896(+) (10)	NA	Q945M8	UPF0497 membrane protein At3g53850	AT3G53850.1	Uncharacterised protein family (UPF0497) 	LOC_Os09g07480.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g018930.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1994.1.S1_at	A	A1TS	POPTR_0004s22620	POPTR_0004s22620 (11)	scaffold_11:803520-807087(+) (11)//scaffold_4:21486376-21489933(+) (11)	POPTR_0011s01280 (7)	O65199	"Superoxide dismutase [Cu-Zn], chloroplastic"	AT2G28190.1	copper/zinc superoxide dismutase 2 	LOC_Os08g44770.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr4g076170.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
Ptp.1995.1.S1_s_at	A	A1TS	POPTR_0006s04320	POPTR_0006s04320 (11)	scaffold_6:2948499-2948868(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os03g23010.1	expressed protein	Medtr7g107690.1	"ERD15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1996.1.S1_s_at	A	A1TS	POPTR_0006s03180	POPTR_0006s03180 (11)	scaffold_6:2001953-2002530(-) (11)	NA	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.1997.1.S1_x_at	A	A1TS	POPTR_0005s04630	POPTR_0005s04630 (11)	scaffold_5:3102263-3103886(-) (11)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT5G27200.1	acyl carrier protein 5 	LOC_Os12g34890.1	"acyl carrier protein, putative, expressed"	Medtr2g025430.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
Ptp.1998.1.S1_at	A	A1TS	POPTR_0009s11880	POPTR_0009s11880 (11)	scaffold_9:9783986-9785218(+) (11)	NA	Q42599	"NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial"	AT1G79010.1	Alpha-helical ferredoxin 	LOC_Os03g56300.1	"4Fe-4S binding domain containing protein, expressed"	AC225519_18.1	Alpha-helical ferredoxin AC225519.5 76420-84409 E EGN_Mt090430 200	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.1999.2.S1_s_at	A	A1TS	POPTR_0008s03800	POPTR_0008s03800 (11)	scaffold_8:2045932-2046626(-) (11)	NA	Q9LZG0	Adenosine kinase 2	AT5G03300.1	adenosine kinase 2 	LOC_Os02g41590.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2.1.S1_s_at	A	A1TS	POPTR_0011s15930	POPTR_0011s15930 (11)	scaffold_11:17939106-17940510(+) (11)	NA	Q9SA78	Coatomer subunit epsilon-1	AT1G30630.1	Coatomer epsilon subunit 	LOC_Os04g52270.1	"coatomer subunit epsilon, putative, expressed"	NA	NA	"GO:0006890|""retrograde vesicle-mediated transport, Golgi to ER"""	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
Ptp.20.1.A1_at	A	A1TS	POPTR_0006s20710	POPTR_0006s20710 (11)	scaffold_6:19695708-19695859(-) (11)	NA	O81221	Actin	AT3G12110.1	actin-11 	LOC_Os03g50885.1	"actin, putative, expressed"	Medtr7g111960.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.2000.1.S1_at	A	A1TS	POPTR_0005s11200	POPTR_0005s11200 (11)	scaffold_5:8119625-8120562(-) (11)	NA	NA	NA	AT4G35920.2	PLAC8 family protein 	LOC_Os03g06120.3	"PLAC8 family protein, expressed"	Medtr5g022570.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2001.1.S1_s_at	A	A1TS	POPTR_0004s16990	POPTR_0004s16990 (11)	scaffold_4:17349947-17352075(+) (11)	NA	NA	NA	AT4G34700.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os06g50000.1	"LYR motif containing protein, putative, expressed"	Medtr3g163080.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2003.1.A1_x_at	A	A1TS	POPTR_0008s05000	POPTR_0008s05000 (11)	scaffold_8:2910794-2912384(+) (11)	NA	Q9AT35	60S ribosomal protein L23a	AT3G55280.2	ribosomal protein L23AB 	LOC_Os01g24690.1	"60S ribosomal protein L23A, putative, expressed"	Medtr4g079040.1	"Ribosomal protein L23, N-terminal; Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2004.1.A1_at	A	A1TS	POPTR_0003s04140	POPTR_0003s04140 (11)	scaffold_3:4800333-4800979(-) (11)	NA	Q8RWN9	"Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial"	AT3G13930.1	"Dihydrolipoamide acetyltransferase, long form protein "	LOC_Os06g01630.5	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
Ptp.2005.1.S1_at	A	A1TS	POPTR_0001s31850	POPTR_0001s31850 (10)	scaffold_1:30209736-30210083(+) (11)	NA	Q9M3V8	40S ribosomal protein S6	AT5G10360.1	Ribosomal protein S6e 	LOC_Os03g27260.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2006.1.S1_s_at	A	A1MS	POPTR_0001s13730	POPTR_0001s13730 (11)	scaffold_1:10796996-10798770(-) (11)	NA	Q9C7F5	Nuclear transport factor 2	AT1G27970.1	nuclear transport factor 2B 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
Ptp.2007.1.S1_s_at	A	A1TS	POPTR_0001s09090	POPTR_0001s09090 (10)	scaffold_1:6951061-6951360(-) (10)	NA	P93788	Remorin	AT5G23750.2	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2008.1.S1_at	A	A1TS	POPTR_0017s14180	POPTR_0017s14180 (11)	scaffold_17:14332632-14333934(-) (11)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os02g28810.2	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	GO:0005622|intracellular
Ptp.2009.1.S1_a_at	A	A1TS	POPTR_0003s13340	POPTR_0003s13340 (11)	scaffold_3:13741048-13741093(+) (11)	NA	Q9SUR3	Reticulon-like protein B1	AT4G23630.1	VIRB2-interacting protein 1 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.2010.1.S1_at	A	A1TS	POPTR_0008s09940	POPTR_0008s09940 (10)	scaffold_8:6155255-6156879(-) (10)	NA	O48649	ADP-ribosylation factor 1	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2012.1.S1_at	A	A1TS	POPTR_0008s14060	POPTR_0008s14060 (11)	scaffold_8:9292157-9293206(-) (11)	NA	NA	NA	AT2G37870.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g62980.1	"LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2014.1.S1_s_at	A	A1TS	POPTR_0006s15400	POPTR_0006s15400 (11)	scaffold_6:12763045-12763690(+) (11)	NA	P12955	Xaa-Pro dipeptidase	AT4G29490.1	Metallopeptidase M24 family protein 	LOC_Os02g13140.1	"xaa-Pro dipeptidase, putative, expressed"	Medtr4g160750.1	Peptidase M24 	GO:0009987|cellular process	NA	NA
Ptp.2015.1.S1_at	A	A1TS	POPTR_0003s06780	POPTR_0003s06780 (11)	scaffold_3:8307749-8308048(-) (11)	NA	NA	NA	AT3G14170.1	Plant protein of unknown function (DUF936) 	LOC_Os03g08390.2	expressed protein	Medtr5g035680.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2016.1.S1_a_at	A	A1TS	POPTR_0002s14130	POPTR_0002s14130 (11)	scaffold_2:10483884-10484561(+) (11)	NA	Q9M5M1	40S ribosomal protein S11	AT5G23740.1	ribosomal protein S11-beta 	LOC_Os08g10608.1	"ribosomal protein S17, putative, expressed"	Medtr8g092770.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2017.1.A1_s_at	A	A1TS	POPTR_0016s10780	POPTR_0016s10780 (11)	scaffold_16:9145083-9145485(-) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2018.1.S1_a_at	A	A1TS	POPTR_0010s05590	POPTR_0010s05590 (11)	scaffold_10:7028452-7028557(-) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr3g114720.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2018.2.A1_s_at	A	A1TS	POPTR_0005s03640	POPTR_0005s03640 (11)	scaffold_5:2425225-2425701(-) (11)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT1G09000.1	NPK1-related protein kinase 1 	LOC_Os09g21510.1	"STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr7g139260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2019.1.A1_at	A	A1TS	POPTR_0001s30470	POPTR_0001s30470 (10)	scaffold_1:28929604-28929968(-) (10)	NA	NA	NA	AT3G19540.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2020.1.S1_s_at	A	A1TS	POPTR_0012s09310	POPTR_0012s09310 (11)	scaffold_12:10345948-10346140(-) (11)	NA	Q9C5M8	Probable pectate lyase 18	AT4G24780.2	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2021.1.S1_at	A	A1TS	POPTR_0001s04360	POPTR_0001s04360 (9)	scaffold_1:3457684-3458745(+) (9)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT3G13560.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os07g38930.5	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g134060.1	"Glycoside hydrolase, family 17; X8; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2022.1.S1_s_at	A	A1TS	POPTR_0001s34170	POPTR_0001s34170 (11)	scaffold_1:32305618-32306583(-) (11)	NA	Q8MR62	Viral IAP-associated factor homolog	AT5G14240.1	Thioredoxin superfamily protein 	LOC_Os01g08960.1	"phosducin-like protein 3, putative, expressed"	Medtr2g038730.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2023.1.S1_s_at	A	A1TS	POPTR_0006s01890	POPTR_0006s01890 (11)	scaffold_6:1136863-1137315(-) (11)	NA	NA	NA	AT4G16400.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2026.1.S1_s_at	A	A1TS	POPTR_0008s09150	POPTR_0008s09150 (11)	scaffold_8:5672716-5673424(-) (11)	NA	Q9SC12	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
Ptp.2027.1.A1_at	A	A1TS	POPTR_0006s00460	POPTR_0006s00460 (11)	scaffold_6:220284-220439(-) (11)	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30210.1	expressed protein	Medtr2g033120.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2028.1.S1_at	A	A1TS	POPTR_0004s24110	POPTR_0004s24110 (10)	scaffold_4:22844442-22844859(-) (10)	NA	P33543	Putative kinase-like protein TMKL1	AT5G07620.1	Protein kinase superfamily protein 	LOC_Os04g46320.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g050080.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2029.1.A1_at	A	A1TS	POPTR_0002s24090	POPTR_0002s24090 (11)	scaffold_2:21533297-21534075(-) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07380.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.203.1.S1_s_at	A	A1TS	POPTR_0008s04070	POPTR_0008s04070 (11)	scaffold_8:2270774-2271039(+) (11)	NA	Q12893	Transmembrane protein 115	AT3G07950.1	rhomboid protein-related 	LOC_Os03g24390.1	"OsRhmbd8 - Putative Rhomboid homologue, expressed"	Medtr1g121420.1	"Transmembrane protein 115, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2031.1.S1_at	A	A1MS	POPTR_0002s08940	POPTR_0002s08940 (11)	scaffold_2:6319012-6319264(-) (11)	NA	NA	NA	AT4G08460.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.1	expressed protein	Medtr3g098400.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2032.1.A1_at	A	A1TS	POPTR_0015s14960	POPTR_0015s14960 (9)	scaffold_15:14359866-14360607(+) (9)	NA	Q93Y22	Coatomer subunit delta	AT5G05010.2	clathrin adaptor complexes medium subunit family protein 	LOC_Os05g24594.1	"coatomer subunit delta, putative, expressed"	Medtr2g122280.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.2033.1.A1_at	A	A1TS	POPTR_0005s23200	POPTR_0005s23200 (9)	scaffold_5:22037701-22038235(-) (9)	NA	Q8SSN5	"N-alpha-acetyltransferase 20, NatB catalytic subunit"	AT1G03150.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g49230.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g143670.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.2034.1.A1_at	A	A1TS	POPTR_0003s07610	POPTR_0003s07610 (9)	scaffold_3:9154857-9155530(+) (9)	NA	P49307	Rhizopine catabolism protein mocA	AT4G17370.1	Oxidoreductase family protein 	LOC_Os08g05280.1	"oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed"	Medtr8g105540.1	Bacterial glucose-fructose oxidoreductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2035.1.S1_s_at	A	A1TS	POPTR_0015s01160	POPTR_0015s01160 (11)	scaffold_15:717413-717912(-) (11)	NA	Q8LAP8	Dof zinc finger protein DOF4.6	AT4G24060.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os04g47990.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2036.1.S1_at	A	A1TS	POPTR_0001s34020	POPTR_0001s34020 (9)	scaffold_1:32167362-32167464(+) (9)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT3G01840.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g093120.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2036.1.S1_s_at	A	A1TS	POPTR_0001s34020	POPTR_0001s34020 (11)	scaffold_1:32166956-32167322(+) (11)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT3G01840.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g093120.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2037.1.S1_x_at	A	A1TS	POPTR_0002s04420	POPTR_0002s04420 (11)	scaffold_2:2770733-2772629(+) (11)	NA	P31674	40S ribosomal protein S15	AT5G09500.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2039.1.S1_s_at	A	A1TS	POPTR_0014s01840	POPTR_0014s01840 (11)	scaffold_14:1695331-1696475(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2039.2.S1_x_at	A	A1TS	POPTR_0002s12100	POPTR_0002s12100 (11)	scaffold_2:8984936-8985883(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.204.1.A1_at	A	A1TA	POPTR_0001s37630	POPTR_0001s37630 (10)	scaffold_1:36594089-36594413(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2046.1.A1_at	A	A1TS	POPTR_0002s03550	POPTR_0002s03550 (9)	scaffold_2:2210038-2210383(-) (9)	NA	Q54JC2	Uncharacterized protein DDB_G0288155	AT1G19580.1	gamma carbonic anhydrase 1 	LOC_Os12g07220.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
Ptp.2048.2.S1_at	A	A1TS	POPTR_0014s07170	POPTR_0014s07170 (11)	scaffold_14:5423298-5424178(+) (11)	NA	NA	NA	AT4G00752.1	UBX domain-containing protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2048.3.A1_a_at	A	A1TS	POPTR_0014s07170	POPTR_0014s07170 (11)	scaffold_14:5426817-5427992(+) (11)	NA	NA	NA	AT4G00752.1	UBX domain-containing protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2049.1.A1_at	A	A1TS	POPTR_0012s00720	POPTR_0012s00720 (11)	scaffold_12:398086-398341(-) (11)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.205.1.A1_at	A	A1TS	POPTR_0006s09200	POPTR_0006s09200 (11)	scaffold_6:6787959-6788099(+) (11)	NA	P93394	Uracil phosphoribosyltransferase	AT3G53900.2	uracil phosphoribosyltransferase 	LOC_Os05g38170.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.205.3.A1_s_at	A	A1TS	POPTR_0006s09200	POPTR_0006s09200 (11)	scaffold_6:6787561-6787736(+) (11)	NA	P93394	Uracil phosphoribosyltransferase	AT3G53900.2	uracil phosphoribosyltransferase 	LOC_Os05g38170.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.2050.1.A1_s_at	A	A1TS	POPTR_0017s13810	POPTR_0017s13810 (11)	scaffold_17:14039005-14039693(+) (11)//scaffold_571:12542-13232(-) (10)	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.2051.1.S1_at	A	A1TS	POPTR_0010s19940	POPTR_0010s19940 (11)	scaffold_10:17702647-17703484(+) (11)	NA	O04202	Eukaryotic translation initiation factor 3 subunit F	AT2G39990.1	eukaryotic translation initiation factor 2 	LOC_Os05g01450.1	"eukaryotic translation initiation factor 3 subunit F, putative, expressed"	Medtr5g089340.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2052.1.S1_at	A	A1TS	POPTR_0003s20450	POPTR_0003s20450 (11)	scaffold_3:18945690-18946056(+) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr2g117700.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2052.1.S1_s_at	A	A1TS	POPTR_0003s20450	POPTR_0003s20450 (11)	scaffold_3:18945811-18946027(+) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr2g117700.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2053.1.A1_at	A	A1TS	POPTR_0001s36720	POPTR_0001s36720 (11)	scaffold_1:35443158-35443318(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.2054.1.S1_s_at	A	A1TS	POPTR_0003s17980	POPTR_0003s17980 (11)	scaffold_3:17213099-17214033(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G15950.1	cinnamoyl coa reductase 1 	LOC_Os08g34280.1	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2055.1.S1_at	A	A1TS	POPTR_0013s06220	POPTR_0013s06220 (9)	scaffold_13:4609904-4611379(+) (9)	NA	NA	NA	AT5G17840.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os03g45344.1	expressed protein	Medtr7g103500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2056.1.S1_s_at	A	A1TS	POPTR_0002s25450	POPTR_0002s25450 (11)	scaffold_2:22504740-22505611(-) (11)	NA	A1A5K2	CLIP-associating protein 1-B	AT2G20190.1	CLIP-associated protein 	LOC_Os04g42840.1	"HEAT repeat family protein, putative, expressed"	Medtr7g117940.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2058.2.A1_a_at	A	A1TS	POPTR_0012s07470	POPTR_0012s07470 (11)	scaffold_12:8390635-8392675(+) (11)	NA	Q9LV17	Transcription factor bHLH79	AT5G62610.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g09590.1	"bHLH transcription factor, putative"	Medtr8g074580.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.2062.1.A1_at	A	A1TS	POPTR_0012s03790	POPTR_0012s03790 (11)	scaffold_12:3031157-3032408(+) (11)	NA	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0004371|glycerone kinase activity	NA
Ptp.2063.1.A1_s_at	A	A1TS	POPTR_0001s23520	POPTR_0001s23520 (11)	scaffold_1:22915465-22915791(+) (11)	POPTR_0009s02770 (6)	Q86HW6	Probable serine/threonine-protein kinase DDB_G0276461	AT2G32850.2	Protein kinase superfamily protein 	LOC_Os02g37880.3	"cyclin G-associated kinase, putative, expressed"	Medtr8g115300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2064.1.S1_at	A	A1TS	POPTR_0013s02950	POPTR_0013s02950 (11)	scaffold_13:1791355-1791590(+) (11)	NA	Q9ZNV9	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os08g44350.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr1g098840.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
Ptp.2065.1.A1_at	A	A1TS	POPTR_0001s10120	POPTR_0001s10120 (11)	scaffold_1:7830601-7830783(-) (11)	NA	P13240	Disease resistance response protein 206	AT4G23690.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44930.1	"dirigent, putative, expressed"	Medtr8g137520.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2066.1.S1_s_at	A	A1TS	POPTR_0003s11920	POPTR_0003s11920 (11)	scaffold_3:12642763-12644746(-) (11)	NA	O64644	Histone deacetylase complex subunit SAP18	AT2G45640.1	SIN3 associated polypeptide P18 	LOC_Os02g02960.4	"histone deacetylase complex subunit SAP18, putative, expressed"	AC233100_3.1	Sin3 associated polypeptide p18 AC233100.6 16242-12510 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2069.1.S1_at	A	A1TS	POPTR_0008s16760	POPTR_0008s16760 (9)	scaffold_8:11284565-11289166(+) (9)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G14350.3	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.2070.1.S1_s_at	A	A1TS	POPTR_0001s34530	POPTR_0001s34530 (11)	scaffold_1:32703929-32704449(+) (11)	NA	Q96PB1	CAS1 domain-containing protein 1	AT2G34410.2	O-acetyltransferase family protein 	LOC_Os01g44040.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2071.1.S1_at	A	A1TS	POPTR_0009s10220	POPTR_0009s10220 (9)	scaffold_9:8835615-8835940(+) (9)	NA	P42731	Polyadenylate-binding protein 2	AT1G49760.2	poly(A) binding protein 8 	LOC_Os04g42600.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
Ptp.2072.1.S1_at	A	A1TS	POPTR_0010s21600	POPTR_0010s21600 (11)	scaffold_10:18813502-18813834(+) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2072.2.S1_s_at	A	A2TS	POPTR_0008s05160	POPTR_0008s05160 (11)//POPTR_0010s21600 (11)	scaffold_10:18811566-18812854(+) (11)//scaffold_8:2997157-2998385(-) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2077.1.S1_s_at	A	A1TS	POPTR_0001s34500	POPTR_0001s34500 (11)	scaffold_1:32620506-32621163(+) (11)	NA	Q5RBT0	Programmed cell death protein 5	AT1G29850.1	double-stranded DNA-binding family protein 	LOC_Os05g47446.1	expressed protein	NA	NA	NA	GO:0003677|DNA binding	NA
Ptp.2078.2.S1_s_at	A	A1TS	POPTR_0010s09490	POPTR_0010s09490 (11)	scaffold_10:10294828-10296888(+) (11)	NA	O23714	Proteasome subunit beta type-2-A	AT3G22630.1	20S proteasome beta subunit D1 	LOC_Os03g48930.1	"peptidase, T1 family, putative, expressed"	Medtr5g007000.1	"20S proteasome, A and B subunits "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.2079.1.A1_at	A	A1TS	POPTR_0001s08250	POPTR_0001s08250 (9)	scaffold_1:6296130-6296626(+) (9)	NA	NA	NA	AT1G12450.1	SNARE associated Golgi protein family 	LOC_Os07g28440.1	"SNARE associated Golgi protein, putative, expressed"	Medtr8g106510.1	"F5O11.19, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2081.1.A1_s_at	A	A1TS	POPTR_0002s07290	POPTR_0002s07290 (11)	scaffold_2:4980391-4981053(-) (11)	NA	P25141	Alcohol dehydrogenase 1	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2083.1.A1_at	A	A1TS	POPTR_0002s19720	POPTR_0002s19720 (10)	scaffold_2:15656434-15656653(-) (10)	NA	P24068	Ocs element-binding factor 1	AT3G62420.1	basic region/leucine zipper motif 53 	LOC_Os12g37415.1	expressed protein	Medtr1g106720.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.2084.1.S1_s_at	A	A1TS	POPTR_0005s07860	POPTR_0005s07860 (11)	scaffold_5:5391016-5391249(-) (11)	NA	NA	NA	AT2G22170.1	"Lipase/lipooxygenase, PLAT/LH2 family protein "	LOC_Os06g11812.1	"wound/stress protein, putative, expressed"	Medtr3g101350.1	"Lipase/lipooxygenase, PLAT/LH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2085.2.S1_s_at	A	A2TS	POPTR_0002s09770	POPTR_0002s09770 (11)//POPTR_0005s17120 (11)	scaffold_2:7005602-7005651(-) (11)//scaffold_5:14262859-14262908(-) (11)	NA	P93212	14-3-3 protein 7	AT1G26480.1	general regulatory factor 12 	LOC_Os03g50290.3	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.2087.1.S1_s_at	A	A1TS	POPTR_0008s16840	POPTR_0008s16840 (11)	scaffold_8:11325831-11325931(-) (11)	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os02g40880.1	"ribosomal protein L14, putative, expressed"	Medtr8g138420.1	Ribosomal protein L14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2089.1.S1_x_at	A	A1TS	POPTR_0010s22410	POPTR_0010s22410 (11)	scaffold_10:19348660-19349598(-) (11)	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.209.1.S1_s_at	A	A1TS	POPTR_0004s20450	POPTR_0004s20450 (11)	scaffold_4:20015255-20015618(-) (11)	NA	O42395	Cellular nucleic acid-binding protein	AT3G43590.1	zinc knuckle (CCHC-type) family protein 	LOC_Os11g36480.2	"zinc knuckle domain containing protein, expressed"	Medtr3g110690.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2091.1.S1_at	A	A1TS	POPTR_0015s13200	POPTR_0015s13200 (11)	scaffold_15:13259139-13259634(-) (11)	NA	Q5RAI8	Cleavage and polyadenylation specificity factor subunit 5	AT4G25550.1	"Cleavage/polyadenylation specificity factor, 25kDa subunit "	LOC_Os04g58640.1	"cleavage and polyadenylation specificity factor subunit 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2093.1.S1_at	A	A1TS	POPTR_0004s23140	POPTR_0004s23140 (11)	scaffold_4:21907878-21911870(-) (11)	NA	Q93W20	"NifU-like protein 2, chloroplastic"	AT5G49940.1	NIFU-like protein 2 	LOC_Os11g07916.1	"nifU, putative, expressed"	Medtr2g041590.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
Ptp.2094.3.S1_a_at	A	A1TS	POPTR_0008s16790	POPTR_0008s16790 (11)	scaffold_8:11299669-11300304(+) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G14340.1	casein kinase I 	LOC_Os02g40860.1	"CK1_CaseinKinase_1.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2095.1.S1_at	A	A1TS	POPTR_0010s06750	POPTR_0010s06750 (11)	scaffold_10:8032742-8034509(+) (11)	NA	Q54I90	"NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial"	AT5G08530.1	51 kDa subunit of complex I 	LOC_Os07g45090.1	"NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed"	Medtr1g043800.1	"Respiratory-chain NADH dehydrogenase, 51 kDa subunit "	NA	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051287|NAD or NADH binding||GO:0010181|FMN binding||GO:0051539|""4 iron, 4 sulfur cluster binding"""	NA
Ptp.2097.1.S1_s_at	A	A3TS	POPTR_0014s19300	POPTR_0014s19300 (11)//POPTR_0014s19510 (11)//POPTR_0014s19070 (10)	scaffold_14:16826099-16826431(-) (10)//scaffold_14:17202190-17202522(-) (11)//scaffold_14:17327976-17328308(+) (11)//scaffold_14:17362402-17362734(+) (11)	POPTR_0014s19530 (8)	O95243	Methyl-CpG-binding domain protein 4	AT3G07930.3	DNA glycosylase superfamily protein 	LOC_Os09g01290.1	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	NA	NA	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
Ptp.2097.2.S1_at	A	A1TS	POPTR_0014s19510	POPTR_0014s19510 (11)	scaffold_14:17328430-17328637(+) (11)//scaffold_14:17362856-17363063(+) (11)	NA	O95243	Methyl-CpG-binding domain protein 4	AT3G07930.3	DNA glycosylase superfamily protein 	LOC_Os09g01290.2	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	NA	NA	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
Ptp.2098.2.S1_at	A	A1TS	POPTR_0002s10480	POPTR_0002s10480 (11)	scaffold_2:7562308-7562344(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G09750.1	Eukaryotic aspartyl protease family protein 	LOC_Os03g08790.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g149190.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2099.1.S1_s_at	A	A1TS	POPTR_0008s09430	POPTR_0008s09430 (9)	scaffold_8:5840879-5841157(-) (9)	NA	Q7Z494	Nephrocystin-3	AT3G27960.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g125600.1	"kinesin light chain-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.21.1.S1_s_at	A	A1TS	POPTR_0004s20020	POPTR_0004s20020 (9)	scaffold_4:19673006-19673120(+) (9)	NA	Q6V9I6	Histone deacetylase HDT1	AT3G44750.2	histone deacetylase 3 	LOC_Os05g51830.1	"ZOS5-12 - C2H2 zinc finger protein, expressed"	Medtr4g073420.1	"Histone deacetylase HDT1, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.2101.1.S1_at	A	A1TS	POPTR_0005s23280	POPTR_0005s23280 (11)	scaffold_5:22104001-22104988(+) (11)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2101.1.S1_x_at	A	A1TS	POPTR_0005s23280	POPTR_0005s23280 (11)	scaffold_5:22104001-22105088(+) (11)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2102.1.S1_s_at	A	A1TS	POPTR_0014s14370	POPTR_0014s14370 (10)	scaffold_14:10522502-10522871(-) (10)	NA	Q9MA41	Chitinase-like protein 1	AT1G05850.1	Chitinase family protein 	LOC_Os09g32080.2	"CHIT13 - Chitinase family protein precursor, expressed"	Medtr7g021450.1	"Glycoside hydrolase, family 19 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
Ptp.2104.1.A1_s_at	A	A1TS	POPTR_0003s15220	POPTR_0003s15220 (11)	scaffold_3:15071901-15072370(-) (11)	NA	Q9Y253	DNA polymerase eta	AT5G44740.2	Y-family DNA polymerase H 	LOC_Os01g55300.1	"DNA-directed polymerase, putative, expressed"	AC235671_13.1	UMUC-like DNA-repair protein AC235671.2 55734-58183 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
Ptp.2105.1.S1_s_at	A	A1TS	POPTR_0016s13970	POPTR_0016s13970 (11)	scaffold_16:13204688-13205805(-) (11)	NA	Q94AL9	"Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial"	AT2G38400.1	alanine:glyoxylate aminotransferase 3 	LOC_Os05g39770.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2106.1.A1_s_at	A	A1TS	POPTR_0001s32950	POPTR_0001s32950 (11)	scaffold_1:31220074-31220678(+) (11)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os02g52860.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr7g096810.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2107.1.S1_at	A	A1TS	POPTR_0015s14510	POPTR_0015s14510 (11)	scaffold_15:14068270-14068582(-) (11)	NA	P49200	40S ribosomal protein S20-1	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g14530.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2107.1.S1_x_at	A	A1TS	POPTR_0015s14510	POPTR_0015s14510 (11)	scaffold_15:14068270-14068582(-) (11)	NA	P49200	40S ribosomal protein S20-1	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g14530.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2108.1.S1_at	A	A1TS	POPTR_0019s08300	POPTR_0019s08300 (11)	scaffold_19:9785395-9785472(-) (11)	NA	P53665	"Acyl carrier protein, mitochondrial"	AT1G65290.1	mitochondrial acyl carrier protein 2 	LOC_Os03g22950.1	"acyl carrier protein, putative, expressed"	Medtr7g090000.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
Ptp.2109.1.A1_at	A	A1TS	POPTR_0003s18990	POPTR_0003s18990 (11)	scaffold_3:17854775-17855225(-) (11)	NA	Q9M612	Nascent polypeptide-associated complex subunit alpha-like protein	AT3G12390.1	"Nascent polypeptide-associated complex (NAC), alpha subunit family protein "	LOC_Os01g71230.1	"nascent polypeptide-associated complex subunit alpha-like protein 3, putative, expressed"	Medtr7g105560.1	Ubiquitin-associated; Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.211.1.A1_at	A	A1TS	POPTR_0002s19840	POPTR_0002s19840 (11)	scaffold_2:15761064-15761457(+) (11)	NA	NA	NA	AT4G02100.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os07g49000.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g132780.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
Ptp.2112.1.S1_at	A	A1TS	POPTR_0007s05200	POPTR_0007s05200 (11)	scaffold_7:3353769-3354168(+) (11)	NA	Q7T3H7	Mediator of RNA polymerase II transcription subunit 18	AT2G22370.1	unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g10050.1	expressed protein	Medtr5g047410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2115.1.S1_at	A	A1TS	POPTR_0006s07950	POPTR_0006s07950 (11)	scaffold_6:5809992-5812076(+) (11)	NA	O60925	Prefoldin subunit 1	AT2G07340.1	PREFOLDIN 1 	LOC_Os02g26440.1	"prefoldin subunit, putative, expressed"	Medtr8g042790.1	Prefoldin 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.2116.1.A1_at	A	A1TS	POPTR_0005s02660	POPTR_0005s02660 (11)	scaffold_5:1704495-1705136(+) (11)	NA	Q94F49	Probable histone H2A.5	AT5G27670.1	histone H2A 7 	LOC_Os05g02300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr7g138960.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2118.1.S1_s_at	A	A1TS	POPTR_0009s14000	POPTR_0009s14000 (11)	scaffold_9:11057235-11057679(+) (11)	NA	Q9SZN1	V-type proton ATPase subunit B2	AT4G38510.5	"ATPase, V1 complex, subunit B protein "	LOC_Os01g51380.2	"ATP synthase, putative, expressed"	Medtr7g092560.1	ATPase FliI/YscN 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.2119.1.S1_at	A	A1TS	POPTR_0010s24120	POPTR_0010s24120 (11)	scaffold_10:20492039-20493581(+) (11)	NA	O74978	Uncharacterized RNA-binding protein C1827.05c	AT5G04600.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g31810.3	"RNA recognition motif containing protein, putative, expressed"	Medtr1g137330.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.212.1.A1_a_at	A	A2TS	POPTR_0011s05800	POPTR_0011s05800 (11)//POPTR_0011s05830 (11)	scaffold_11:5820907-5821061(-) (11)//scaffold_11:5841093-5841244(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2120.1.S1_at	A	A1TS	POPTR_0005s02130	POPTR_0005s02130 (11)	scaffold_5:1395279-1395781(-) (11)	NA	Q9LD55	Eukaryotic translation initiation factor 3 subunit A	AT4G11420.1	eukaryotic translation initiation factor 3A 	LOC_Os01g03070.2	"transposon protein, putative, unclassified, expressed"	Medtr7g118360.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2121.1.S1_x_at	A	A1TS	POPTR_0005s11780	POPTR_0005s11780 (11)	scaffold_5:8568670-8568771(-) (11)	NA	Q42064	60S ribosomal protein L8-3	AT4G36130.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr7g084800.1	Elongation factor P-like protein YeiP 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2122.2.S1_a_at	A	A1TS	POPTR_0001s44430	POPTR_0001s44430 (11)	scaffold_1:44841862-44843630(-) (11)	NA	Q5ZI57	Trafficking protein particle complex subunit 3	AT5G54750.1	Transport protein particle (TRAPP) component 	LOC_Os07g44790.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr4g110910.1	"Transport protein particle (TRAPP) component, Bet3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2124.1.A1_s_at	A	A1TS	POPTR_0015s15330	POPTR_0015s15330 (11)	scaffold_15:14647056-14647466(-) (11)	NA	NA	NA	AT2G35150.1	EXORDIUM like 1 	LOC_Os07g31430.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2127.1.S1_at	A	A1TS	POPTR_0002s02310	POPTR_0002s02310 (11)	scaffold_2:1301424-1301791(-) (11)	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.2129.1.S1_at	A	A1TS	POPTR_0010s24900	POPTR_0010s24900 (10)	scaffold_10:20857819-20858399(-) (10)	NA	NA	NA	AT5G04840.1	bZIP protein 	LOC_Os02g33560.1	expressed protein	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.213.1.S1_a_at	A	A1TS	POPTR_0010s13010	POPTR_0010s13010 (11)	scaffold_10:12926115-12926822(+) (11)	NA	NA	NA	AT2G01220.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g49670.1	"cytidylyltransferase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.213.1.S1_s_at	A	A1TS	POPTR_0010s13010	POPTR_0010s13010 (10)	scaffold_10:12925044-12925662(+) (10)	NA	NA	NA	AT2G01220.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g49670.1	"cytidylyltransferase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2130.1.S1_s_at	A	A1TS	POPTR_0002s01080	POPTR_0002s01080 (11)	scaffold_2:567918-568453(-) (11)	NA	P17598	Catalase isozyme 1	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
Ptp.2131.1.S1_s_at	A	A1TS	POPTR_0019s08070	POPTR_0019s08070 (11)	scaffold_19:9443366-9443647(+) (11)	NA	NA	NA	AT3G02790.1	zinc finger (C2H2 type) family protein 	LOC_Os06g49490.1	"ZOS6-10 - C2H2 zinc finger protein, expressed"	Medtr7g089600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2132.2.A1_a_at	A	A1TS	POPTR_0009s06640	POPTR_0009s06640 (11)	scaffold_9:6377701-6381638(-) (11)	NA	P22778	"ATP synthase subunit O, mitochondrial"	AT5G13450.1	delta subunit of Mt ATP synthase 	LOC_Os06g43850.1	"ATP synthase F1, delta subunit family protein, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)""||GO:0005886|plasma membrane"
Ptp.2133.1.S1_s_at	A	A1TS	POPTR_0016s12260	POPTR_0016s12260 (11)	scaffold_16:11606762-11607050(-) (11)	NA	Q9XF88	"Chlorophyll a-b binding protein CP29.2, chloroplastic"	AT3G08940.2	light harvesting complex photosystem II 	LOC_Os07g37240.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr4g012910.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2134.2.S1_at	A	A1TS	POPTR_0010s08900	POPTR_0010s08900 (11)	scaffold_10:9700023-9700580(-) (11)	NA	Q09867	rRNA-processing protein efg1	AT1G04230.1	Protein of unknown function (DUF2361) 	LOC_Os03g58340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2135.1.A1_at	A	A1TS	POPTR_0002s24530	POPTR_0002s24530 (11)	scaffold_2:21893888-21894090(+) (11)	NA	NA	NA	AT3G07120.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g087330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2137.1.S1_at	A	A1TS	POPTR_0014s02930	POPTR_0014s02930 (11)	scaffold_14:2417232-2418153(+) (11)	NA	P97852	Peroxisomal multifunctional enzyme type 2	AT5G42890.1	sterol carrier protein 2 	LOC_Os02g52720.1	"peroxisomal multifunctional enzyme type 2, putative"	Medtr1g024360.1	Short-chain dehydrogenase/reductase SDR; Sterol-binding 	NA	NA	NA
Ptp.2138.1.S1_s_at	A	A1TS	POPTR_0003s16960	POPTR_0003s16960 (11)	scaffold_3:16457594-16458658(+) (11)	NA	NA	NA	AT1G27330.1	Ribosome associated membrane protein RAMP4 	LOC_Os11g41875.2	"membrane protein, putative, expressed"	Medtr2g030550.1	Ribosome associated membrane RAMP4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2139.1.S1_a_at	A	A1TS	POPTR_0001s38560	POPTR_0001s38560 (11)	scaffold_1:37763855-37765150(-) (11)	NA	Q9ZP06	"Malate dehydrogenase 1, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.214.1.A1_s_at	A	A1TS	POPTR_0001s47350	POPTR_0001s47350 (11)	scaffold_1:47581389-47581642(+) (11)	NA	Q1LUT1	Enhancer of mRNA-decapping protein 4	AT3G13300.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g080420.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2141.1.A1_s_at	A	A1TS	POPTR_0018s07050	POPTR_0018s07050 (9)	scaffold_18:7212164-7212529(-) (9)	NA	Q9LTR9	Glycylpeptide N-tetradecanoyltransferase 1	AT5G57020.1	myristoyl-CoA:protein N-myristoyltransferase 	LOC_Os01g51170.1	"glycylpeptide N-tetradecanoyltransferase 1, putative, expressed"	Medtr2g046620.1	Myristoyl-CoA:protein N-myristoyltransferase 	GO:0006499|N-terminal protein myristoylation	GO:0004379|glycylpeptide N-tetradecanoyltransferase activity	NA
Ptp.2142.1.S1_s_at	A	A1TS	POPTR_0001s12840	POPTR_0001s12840 (11)	scaffold_1:9961066-9961824(-) (11)	NA	Q9M2F1	40S ribosomal protein S27-2	AT3G61110.1	ribosomal protein S27 	LOC_Os04g27860.1	"40S ribosomal protein S27, putative"	Medtr2g019110.1	Ribosomal protein S27E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2145.1.A1_at	A	A1TS	POPTR_0016s14360	POPTR_0016s14360 (11)	scaffold_16:13606452-13607545(+) (11)	NA	B1XKV1	Elongation factor P	AT3G08740.1	elongation factor P (EF-P) family protein 	LOC_Os12g02380.1	"elongation factor P, putative, expressed"	Medtr7g080370.1	Elongation factor P/YeiP; Elongation factor P-like protein YeiP; ; ; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	NA
Ptp.2147.2.S1_s_at	A	A1TS	POPTR_0014s13760	POPTR_0014s13760 (11)	scaffold_14:10081012-10083070(+) (11)	NA	Q84Y95	"Monothiol glutaredoxin-S14, chloroplastic"	AT3G54900.1	CAX interacting protein 1 	LOC_Os03g63420.1	"OsGrx_S14 - glutaredoxin subgroup II, expressed"	Medtr7g089300.1	Glutaredoxin-related protein; Glutaredoxin active site 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.2148.1.S1_at	A	A1TS	POPTR_0001s11600	POPTR_0001s11600 (11)	scaffold_1:9014821-9014939(+) (11)	POPTR_0003s14870 (7)	Q9SHE8	"Photosystem I reaction center subunit III, chloroplastic"	AT1G31330.1	photosystem I subunit F 	LOC_Os03g56670.2	"photosystem I reaction center subunit III, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
Ptp.2148.1.S1_s_at	A	A1TS	POPTR_0001s11600	POPTR_0001s11600 (11)	scaffold_1:9014664-9014827(+) (11)	NA	Q9SHE8	"Photosystem I reaction center subunit III, chloroplastic"	AT1G31330.1	photosystem I subunit F 	LOC_Os03g56670.2	"photosystem I reaction center subunit III, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
Ptp.2150.1.S1_at	A	A1TS	POPTR_0006s10150	POPTR_0006s10150 (10)	scaffold_6:7538386-7538992(-) (10)	NA	NA	NA	AT3G08920.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os03g18020.1	"rhodanese-like family protein, putative, expressed"	AC235756_2.1	Rhodanese-like AC235756.1 14706-16792 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2151.1.S1_s_at	A	A1TS	POPTR_0010s21840	POPTR_0010s21840 (11)	scaffold_10:18980875-18983772(-) (11)	NA	Q9FRL8	Glutathione S-transferase DHAR2	AT1G75270.1	dehydroascorbate reductase 2 	LOC_Os05g02530.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2152.1.S1_s_at	A	A1TS	POPTR_0001s25990	POPTR_0001s25990 (11)	scaffold_1:25092251-25092610(+) (11)	NA	Q9STZ2	SelT-like protein	AT3G47300.1	SELT-like protein precursor 	LOC_Os01g61580.1	"selT-like protein precursor, putative, expressed"	Medtr4g013030.1	SelT/selW/selH selenoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2153.1.S1_at	A	A1TS	POPTR_0001s36650	POPTR_0001s36650 (10)	scaffold_1:35333775-35334220(+) (10)	NA	Q9FLP0	65-kDa microtubule-associated protein 1	AT5G55230.1	microtubule-associated proteins 65-1 	LOC_Os06g20370.1	"microtubule associated protein, putative, expressed"	Medtr5g101260.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2155.1.S1_s_at	A	A1TS	POPTR_0001s39950	POPTR_0001s39950 (11)	scaffold_1:39234419-39234719(+) (11)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.2156.1.S1_s_at	A	A1TS	POPTR_0002s13970	POPTR_0002s13970 (11)	scaffold_2:10357224-10357994(-) (11)	NA	P39207	Nucleoside diphosphate kinase 1	AT4G09320.1	Nucleoside diphosphate kinase family protein 	LOC_Os10g41410.2	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
Ptp.2158.1.S1_at	A	A1TS	POPTR_0006s25180	POPTR_0006s25180 (11)	scaffold_6:23607066-23608586(+) (11)	NA	Q8GSL5	Profilin	AT4G29340.1	profilin 4 	LOC_Os10g17680.1	"profilin domain containing protein, expressed"	Medtr4g160100.1	Plant profilin 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	GO:0015629|actin cytoskeleton
Ptp.2159.1.S1_at	A	A1TS	POPTR_0015s07340	POPTR_0015s07340 (11)	scaffold_15:8515148-8515707(+) (11)	NA	P27521	"Chlorophyll a-b binding protein 4, chloroplastic"	AT3G47470.1	light-harvesting chlorophyll-protein complex I subunit A4 	LOC_Os08g33820.1	"chlorophyll A-B binding protein, putative, expressed"	AC233662_10.1	Chlorophyll A-B binding protein AC233662.1 39478-42517 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2159.1.S1_s_at	A	A1TS	POPTR_0015s07340	POPTR_0015s07340 (11)	scaffold_15:8515092-8515504(+) (11)	NA	P27521	"Chlorophyll a-b binding protein 4, chloroplastic"	AT3G47470.1	light-harvesting chlorophyll-protein complex I subunit A4 	LOC_Os08g33820.1	"chlorophyll A-B binding protein, putative, expressed"	AC233662_10.1	Chlorophyll A-B binding protein AC233662.1 39478-42517 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.216.1.A1_at	A	A1TS	POPTR_0006s23730	POPTR_0006s23730 (11)	scaffold_6:22441209-22441324(-) (11)	NA	NA	NA	AT1G02180.1	ferredoxin-related 	LOC_Os08g35710.1	expressed protein	Medtr3g139260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2160.1.A1_at	A	A1TS	POPTR_0001s37470	POPTR_0001s37470 (11)	scaffold_1:36451757-36452346(+) (11)	NA	NA	NA	AT5G55610.1	"unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os12g31490.1	expressed protein	Medtr4g129710.1	"receptor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2161.1.S1_s_at	A	A1TS	POPTR_0001s39590	POPTR_0001s39590 (11)	scaffold_1:38812905-38813268(+) (11)	NA	Q54XK2	Protein transport protein Sec61 subunit alpha	AT2G34250.2	SecY protein transport family protein 	LOC_Os03g11440.1	"protein transport protein Sec61 subunit alpha, putative, expressed"	Medtr8g092670.1	SecY protein; ABC transporter related 	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
Ptp.2162.1.S1_at	A	A1TS	POPTR_0001s24910	POPTR_0001s24910 (11)	scaffold_1:24179477-24180297(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2162.1.S1_s_at	A	A1TS	POPTR_0001s24910	POPTR_0001s24910 (11)	scaffold_1:24179635-24179962(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2162.2.S1_s_at	A	A1TS	POPTR_0001s24910	POPTR_0001s24910 (11)	scaffold_1:24180392-24181155(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2163.1.S1_at	A	A2TS	POPTR_0011s14540	POPTR_0011s14540 (11)//POPTR_0011s14550 (11)	scaffold_11:16914517-16914863(+) (11)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.2163.1.S1_x_at	A	A2TS	POPTR_0011s14540	POPTR_0011s14540 (11)//POPTR_0011s14550 (11)	scaffold_11:16914517-16914863(+) (11)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.2164.1.S1_s_at	A	A1TS	POPTR_0018s02470	POPTR_0018s02470 (11)	scaffold_18:2270980-2271426(+) (11)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os02g08440.1	"OsWRKY71 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g138240.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.2165.1.S1_at	A	A1TS	POPTR_0002s19010	POPTR_0002s19010 (11)	scaffold_2:14921745-14922206(+) (11)	NA	P07369	"Chlorophyll a-b binding protein 3C, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os09g17740.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2166.1.S1_s_at	A	A1TS	POPTR_0001s12960	POPTR_0001s12960 (11)	scaffold_1:10051054-10051490(-) (11)	NA	P51132	"Cytochrome b-c1 complex subunit Rieske-2, mitochondrial"	AT5G13430.1	Ubiquinol-cytochrome C reductase iron-sulfur subunit 	LOC_Os02g32120.1	"cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed"	Medtr7g097200.1	Ubiquinol cytochrome reductase transmembrane region; Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0008121|ubiquinol-cytochrome-c reductase activity||GO:0009055|electron carrier activity||GO:0051537|""2 iron, 2 sulfur cluster binding"""	NA
Ptp.2168.1.S1_at	A	A1TS	POPTR_0019s04930	POPTR_0019s04930 (11)	scaffold_19:5139434-5141436(-) (11)	NA	Q02921	Early nodulin-93	AT5G25940.1	early nodulin-related 	LOC_Os02g13380.1	"early nodulin 93 ENOD93 protein, putative, expressed"	Medtr1g008390.1	Early nodulin 93 ENOD93 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2169.1.S1_a_at	A	A1TS	POPTR_0010s03010	POPTR_0010s03010 (9)	scaffold_10:3519909-3519953(-) (9)	NA	O22506	"Glutamine synthetase, chloroplastic"	AT5G35630.3	glutamine synthetase 2 	LOC_Os04g56400.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr2g026390.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2169.1.S1_s_at	A	A1TS	POPTR_0010s03010	POPTR_0010s03010 (11)	scaffold_10:3519952-3520195(-) (11)	NA	O22506	"Glutamine synthetase, chloroplastic"	AT5G35630.3	glutamine synthetase 2 	LOC_Os04g56400.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr2g026390.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2169.2.S1_s_at	A	A2TS	POPTR_0008s20460	POPTR_0010s03010 (11)//POPTR_0008s20460 (11)	scaffold_10:3520199-3520244(-) (11)//scaffold_8:14204054-14204099(-) (11)	NA	P08281	"Glutamine synthetase leaf isozyme, chloroplastic"	AT5G35630.3	glutamine synthetase 2 	LOC_Os04g56400.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr2g026390.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2169.3.S1_at	A	A1TA	POPTR_0013s02220	POPTR_0013s02220 (11)	scaffold_13:1328871-1330373(-) (11)	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.2	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2170.1.A1_at	A	A1TS	POPTR_0014s15660	POPTR_0014s15660 (9)	scaffold_14:11676562-11676696(+) (9)	NA	Q8VYE5	"Glucan endo-1,3-beta-glucosidase 12"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2171.1.S1_a_at	A	A1TS	POPTR_0008s05740	POPTR_0008s05740 (11)	scaffold_8:3332730-3333466(+) (11)	NA	Q9C7B1	Telomere repeat-binding protein 3	AT3G12560.1	TRF-like 9 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr5g087440.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2172.1.S1_at	A	A1TS	POPTR_0002s10870	POPTR_0002s10870 (11)	scaffold_2:7890765-7890887(+) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
Ptp.2172.2.S1_a_at	A	A1TS	POPTR_0002s10870	POPTR_0002s10870 (10)	scaffold_2:7890227-7890266(+) (10)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
Ptp.2172.2.S1_s_at	A	A1TS	POPTR_0002s10870	POPTR_0002s10870 (11)	scaffold_2:7890151-7890503(+) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
Ptp.2173.2.S1_a_at	A	A1TS	POPTR_0010s15250	POPTR_0010s15250 (11)	scaffold_10:14573963-14574020(+) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.2176.1.S1_at	A	A1TS	POPTR_0002s02220	POPTR_0002s02220 (11)	scaffold_2:1232676-1233048(-) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022060.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.2177.1.S1_at	A	A1TS	POPTR_0014s10200	POPTR_0014s10200 (11)	scaffold_14:7654553-7656619(+) (11)	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT2G46820.2	photosystem I P subunit 	LOC_Os07g28610.2	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2177.1.S1_x_at	A	A1TS	POPTR_0014s10200	POPTR_0014s10200 (11)	scaffold_14:7654171-7656619(+) (11)	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT2G46820.2	photosystem I P subunit 	LOC_Os07g28610.2	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2178.1.S1_at	A	A1TS	POPTR_0006s26650	POPTR_0006s26650 (11)	scaffold_6:24806696-24807243(-) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2178.1.S1_x_at	A	A1TS	POPTR_0006s26650	POPTR_0006s26650 (11)	scaffold_6:24806675-24807717(-) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.218.1.A1_at	A	A1TS	POPTR_0006s06370	POPTR_0006s06370 (11)	scaffold_6:4549620-4550159(+) (11)	NA	Q5ZHV2	"N-alpha-acetyltransferase 35, NatC auxiliary subunit"	AT2G11000.1	MAK10 homologue 	LOC_Os02g55950.1	"ATMAK10, putative, expressed"	Medtr8g121510.1	"Protein MAK10 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2182.1.S1_at	A	A1TS	POPTR_0012s02260	POPTR_0012s02260 (10)	scaffold_12:1883597-1885360(-) (10)	NA	B6ISY6	ATP-dependent Clp protease ATP-binding subunit ClpX	AT5G53350.1	CLP protease regulatory subunit X 	LOC_Os02g35630.1	"AAA family ATPase, putative, expressed"	Medtr3g123850.1	"ClpX, ATPase regulatory subunit "	NA	GO:0005524|ATP binding	NA
Ptp.2183.1.S1_s_at	A	A1TS	POPTR_0010s02340	POPTR_0010s02340 (11)	scaffold_10:2691452-2692478(+) (11)	NA	Q68W88	50S ribosomal protein L14	AT5G46160.2	Ribosomal protein L14p/L23e family protein 	LOC_Os12g42180.1	"ribosomal protein, putative, expressed"	Medtr5g104080.1	"Ribosomal protein L14, bacterial and organelle form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2184.1.S1_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (11)	scaffold_14:13872970-13874117(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
Ptp.2184.2.S1_s_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (11)	scaffold_14:13874267-13874445(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
Ptp.2185.1.S1_s_at	A	A1TS	POPTR_0005s01470	POPTR_0005s01470 (11)	scaffold_5:958558-958876(-) (11)	NA	NA	NA	AT1G09310.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2186.1.S1_a_at	A	A1TS	POPTR_0018s11600	POPTR_0018s11600 (11)	scaffold_18:12264202-12264279(-) (11)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
Ptp.2186.2.S1_at	A	A1MS	POPTR_0018s11600	POPTR_0018s11600 (10)	scaffold_18:12264157-12264516(-) (10)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
Ptp.2186.3.S1_at	A	A1MS	POPTR_0018s11600	POPTR_0018s11600 (11)	scaffold_18:12265032-12265250(-) (11)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
Ptp.2188.1.S1_a_at	A	A1TS	POPTR_0001s06150	POPTR_0001s06150 (11)	scaffold_1:4757584-4758142(-) (11)	NA	NA	NA	AT2G38800.1	Plant calmodulin-binding protein-related 	LOC_Os05g31690.1	expressed protein	Medtr3g021660.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2188.1.S1_s_at	A	A1TS	POPTR_0001s06150	POPTR_0001s06150 (11)	scaffold_1:4757648-4757885(-) (11)	NA	NA	NA	AT2G38800.1	Plant calmodulin-binding protein-related 	LOC_Os05g31690.1	expressed protein	Medtr3g021660.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2189.1.A1_s_at	A	A1TS	POPTR_0001s10710	POPTR_0001s10710 (11)	scaffold_1:8335499-8336435(+) (11)	NA	Q39828	Dynamin-related protein 5A	AT5G42080.1	dynamin-like protein 	LOC_Os05g48240.1	"dynamin family protein, putative, expressed"	Medtr5g009190.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.219.1.A1_at	A	A1TS	POPTR_0005s06140	POPTR_0005s06140 (11)	scaffold_5:4045536-4046854(+) (11)	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.219.2.S1_s_at	A	A1TS	POPTR_0005s06140	POPTR_0005s06140 (11)	scaffold_5:4044081-4044569(+) (11)	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2191.1.S1_at	A	A1TS	POPTR_0014s15780	POPTR_0014s15780 (9)	scaffold_14:11847345-11848985(+) (9)	NA	NA	NA	AT1G04985.1	unknown protein; Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g57330.1	expressed protein	Medtr5g092340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2193.1.A1_s_at	A	A2TS	POPTR_0005s24200	POPTR_0005s24200 (11)//POPTR_0005s24220 (9)	scaffold_5:22813564-22813793(+) (11)//scaffold_5:22837557-22837671(+) (9)	NA	O81117	Cytochrome P450 94A1	AT5G63450.1	"cytochrome P450, family 94, subfamily B, polypeptide 1 "	LOC_Os03g12260.1	"cytochrome P450 protein, putative, expressed"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2196.1.S1_at	A	A1TS	POPTR_0003s21940	POPTR_0003s21940 (10)	scaffold_3:19875603-19876061(+) (10)//scaffold_3:19925682-19926140(+) (10)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12560.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011780.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2197.1.A1_at	A	A2TS	POPTR_0010s01330	POPTR_0010s02110 (9)//POPTR_0010s01330 (9)	scaffold_10:1331536-1332435(+) (9)//scaffold_10:2429868-2430767(-) (9)	NA	P19515	Lipase	AT5G18640.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g30900.1	"lipase precursor, putative, expressed"	Medtr2g025130.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.2198.1.A1_at	A	A1TS	POPTR_0002s05670	POPTR_0002s05670 (11)	scaffold_2:3727362-3732648(-) (11)	NA	Q28D01	WD repeat-containing protein 26	AT5G08560.2	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2199.3.S1_at	A	A1MS	POPTR_0012s05260	POPTR_0012s05260 (11)	scaffold_12:4851177-4851732(+) (11)	NA	Q6YYA3	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT3G18390.1	CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os05g47850.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr6g028390.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
Ptp.22.1.S1_s_at	A	A1TS	POPTR_0012s14720	POPTR_0012s14720 (11)	scaffold_12:14503805-14506898(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.22.2.S1_s_at	A	A1TS	POPTR_0012s14720	POPTR_0012s14720 (11)	scaffold_12:14507388-14507602(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.220.1.A1_at	A	A1TS	POPTR_0006s11510	POPTR_0006s11510 (9)	scaffold_6:8720422-8720656(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2200.1.A1_at	A	A1TS	POPTR_0002s25170	POPTR_0002s25170 (11)	scaffold_2:22353846-22353951(+) (11)	NA	NA	NA	AT4G27990.1	YGGT family protein 	LOC_Os07g08770.1	"YGGT family protein, putative, expressed"	Medtr3g139240.1	hypothetical protein 	NA	NA	GO:0016020|membrane
Ptp.2200.1.A1_s_at	A	A1TS	POPTR_0002s25170	POPTR_0002s25170 (11)	scaffold_2:22353474-22353657(+) (11)	NA	NA	NA	AT4G27990.1	YGGT family protein 	LOC_Os07g08770.1	"YGGT family protein, putative, expressed"	Medtr3g139240.1	hypothetical protein 	NA	NA	GO:0016020|membrane
Ptp.2201.1.S1_at	A	A1TS	POPTR_0003s06770	POPTR_0003s06770 (11)	scaffold_3:8305672-8306353(+) (11)	NA	P05050	Alpha-ketoglutarate-dependent dioxygenase AlkB	AT3G14160.1	2-oxoglutarate-dependent dioxygenase family protein 	LOC_Os03g60190.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr4g031500.1	"Alpha-ketoglutarate-dependent dioxygenase alkB, related "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.2202.1.A1_at	A	A1TS	POPTR_0012s02560	POPTR_0012s02560 (9)	scaffold_12:2106402-2106884(+) (9)	NA	O95714	E3 ubiquitin-protein ligase HERC2	AT3G26100.2	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os12g18650.4	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr3g102750.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2203.1.S1_at	A	A1TS	POPTR_0002s03140	POPTR_0002s03140 (10)	scaffold_2:1946888-1946991(+) (10)	NA	Q43636	Thioredoxin H-type	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr5g021080.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2204.1.S1_at	A	A1TS	POPTR_0004s06580	POPTR_0004s06580 (10)	scaffold_4:5287597-5288515(-) (10)	NA	Q803H0	UPF0415 protein C7orf25 homolog	AT1G73380.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733); Has 162 Blast hits to 160 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os10g34810.1	expressed protein	Medtr6g083960.1	Protein of unknown function DUF1308 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2206.2.A1_a_at	A	A1TS	POPTR_0005s07360	POPTR_0005s07360 (11)	scaffold_5:5030734-5030936(+) (11)	NA	Q9NS86	LanC-like protein 2	AT5G65280.1	GCR2-like 1 	LOC_Os10g35480.1	"lanC-like protein 2, putative, expressed"	Medtr3g102050.1	Lanthionine synthetase C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2207.1.S1_at	A	A1TS	POPTR_0005s21320	POPTR_0005s21320 (9)	scaffold_5:20430767-20432660(-) (9)	NA	P48504	Cytochrome b-c1 complex subunit 6	AT1G15120.1	Ubiquinol-cytochrome C reductase hinge protein 	LOC_Os11g06340.1	"ubiquinol-cytochrome C reductase hinge protein, putative, expressed"	Medtr2g008190.1	Ubiquinol-cytochrome C reductase hinge protein 	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
Ptp.2208.1.S1_s_at	A	A1TS	POPTR_0001s25620	POPTR_0001s25620 (11)	scaffold_1:24695227-24695637(+) (11)	NA	Q9FIM2	"ATP-dependent zinc metalloprotease FTSH 9, chloroplastic"	AT5G58870.1	FTSH protease 9 	LOC_Os02g43350.1	"OsFtsH7  FtsH protease, homologue of AtFtsH7, expressed"	Medtr5g078300.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.221.2.A1_s_at	A	A1TS	POPTR_0017s13100	POPTR_0017s13100 (10)	scaffold_17:13268483-13269456(+) (10)	NA	Q54KZ8	Eukaryotic translation initiation factor 3 subunit M	AT5G15610.1	Proteasome component (PCI) domain protein 	LOC_Os04g01290.1	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2210.1.A1_s_at	A	A1TS	POPTR_0001s30010	POPTR_0001s30010 (11)	scaffold_1:28594637-28594967(+) (11)	NA	NA	NA	AT2G14680.3	myosin heavy chain-related 	LOC_Os03g31730.1	expressed protein	Medtr5g005400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2211.1.S1_at	A	A1TS	POPTR_0001s13630	POPTR_0001s13630 (9)	scaffold_1:10697461-10697836(+) (9)	NA	Q6YZE8	Squamosa promoter-binding-like protein 16	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.2212.1.A1_at	A	A1TS	POPTR_0006s27840	POPTR_0006s27840 (11)	scaffold_6:25695611-25695912(-) (11)	NA	Q9SKZ2	Probable CCR4-associated factor 1 homolog 7	AT2G32070.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
Ptp.2213.1.S1_at	A	A1TS	POPTR_0009s01900	POPTR_0009s01900 (10)	scaffold_9:2377972-2379100(+) (10)	NA	Q6MD85	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	AT5G60600.3	4-hydroxy-3-methylbut-2-enyl diphosphate synthase 	LOC_Os02g39160.1	"hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed"	Medtr2g110470.1	IspG protein; Dihydropteroate synthase-like 	GO:0055114|oxidation reduction||GO:0016114|terpenoid biosynthetic process	GO:0046429|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	NA
Ptp.2215.1.S1_s_at	A	A1MS	POPTR_0018s09490	POPTR_0018s09490 (10)	scaffold_18:10376326-10376490(+) (11)	NA	Q9SP35	Mitochondrial import inner membrane translocase subunit Tim17	AT2G37410.2	translocase inner membrane subunit 17-2 	LOC_Os07g41330.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.2218.1.S1_s_at	A	A1TS	POPTR_0001s00430	POPTR_0001s00430 (11)	scaffold_1:329375-332732(-) (11)	NA	NA	NA	AT5G47570.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g40410.1	expressed protein	Medtr8g105980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2219.1.S1_at	A	A1TS	POPTR_0004s03160	POPTR_0004s03160 (9)	scaffold_4:2129193-2129749(-) (11)	NA	Q41932	"Oxygen-evolving enhancer protein 3-2, chloroplastic"	AT4G05180.1	photosystem II subunit Q-2 	LOC_Os07g36080.1	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.2219.2.S1_a_at	A	A1TS	POPTR_0004s03160	POPTR_0004s03160 (11)	scaffold_4:2129817-2130548(-) (11)	NA	Q41932	"Oxygen-evolving enhancer protein 3-2, chloroplastic"	AT4G05180.1	photosystem II subunit Q-2 	LOC_Os07g36080.1	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.222.2.A1_x_at	A	A1TS	POPTR_0017s06450	POPTR_0017s06450 (10)	scaffold_17:4942587-4942851(-) (10)	NA	P0CG84	Polyubiquitin (Fragment)	AT4G05320.6	polyubiquitin 10 	LOC_Os05g42424.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.2	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2221.1.A1_at	A	A1TS	POPTR_0003s07130	POPTR_0003s07130 (11)	scaffold_3:8719956-8720441(-) (11)	NA	Q9C8M9	Protein STRUBBELIG-RECEPTOR FAMILY 6	AT1G53730.1	STRUBBELIG-receptor family 6 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2223.1.S1_at	A	A1TS	POPTR_0014s16030	POPTR_0014s16030 (10)	scaffold_14:12101714-12102195(+) (10)	NA	Q0I902	Threonyl-tRNA synthetase	AT2G04842.1	"threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative "	LOC_Os02g33500.1	"threonyl-tRNA synthetase, putative, expressed"	Medtr3g106090.1	"Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.2225.2.S1_at	A	A1MS	POPTR_0002s05660	POPTR_0002s05660 (9)	scaffold_2:3725027-3725359(+) (9)	NA	Q9SLQ8	"Oxygen-evolving enhancer protein 2, chloroplastic"	AT1G06680.1	photosystem II subunit P-1 	LOC_Os07g04840.1	"PsbP, putative, expressed"	Medtr5g097510.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.2226.1.S1_at	A	A1TS	POPTR_0003s13460	POPTR_0003s13460 (9)	scaffold_3:13837773-13838014(-) (9)	NA	P13240	Disease resistance response protein 206	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44250.1	"dirigent, putative, expressed"	Medtr8g137520.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2227.1.A1_at	A	A1TS	POPTR_0010s12030	POPTR_0010s12030 (11)	scaffold_10:12139633-12139944(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2229.1.S1_at	A	A1TS	POPTR_0004s16110	POPTR_0004s16110 (11)	scaffold_4:16549359-16550910(-) (11)	NA	P93398	Guanine nucleotide-binding protein subunit beta-2	AT4G34460.1	GTP binding protein beta 1 	LOC_Os03g46650.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g159480.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2233.1.S1_at	A	A1TS	POPTR_0012s06890	POPTR_0012s06890 (10)	scaffold_12:7401488-7402024(-) (10)	NA	NA	NA	AT3G29270.2	RING/U-box superfamily protein 	LOC_Os03g31320.2	"RING zinc finger protein-like, putative, expressed"	Medtr6g013870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2234.1.S1_s_at	A	A1TS	POPTR_0012s02170	POPTR_0012s02170 (11)	scaffold_12:1816191-1816656(+) (11)	NA	Q9M3B0	Probable pectinesterase/pectinesterase inhibitor 34	AT3G49220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g13320.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.2235.2.A1_a_at	A	A1TS	POPTR_0005s28110	POPTR_0005s28110 (11)	scaffold_5:25477953-25478658(-) (11)	NA	Q9SRE6	Calcium-binding protein CML38	AT1G76650.3	calmodulin-like 38 	LOC_Os01g72530.1	"OsCML31 - Calmodulin-related calcium sensor protein, expressed"	Medtr6g025320.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2236.1.A1_s_at	A	A1TS	POPTR_0006s04470	POPTR_0006s04470 (9)	scaffold_6:3050386-3051359(+) (11)	NA	Q96CS2	HAUS augmin-like complex subunit 1	AT2G41350.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21980.1); Has 188 Blast hits to 188 proteins in 66 species: Archae - 0; Bacteria - 12; Metazoa - 90; Fungi - 15; Plants - 54; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). 	LOC_Os08g14220.1	expressed protein	Medtr3g111390.1	"Helix-turn-helix, AraC type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2238.1.S1_at	A	A1TS	POPTR_0007s13040	POPTR_0007s13040 (11)	scaffold_7:13219986-13220120(-) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT2G18280.2	tubby like protein 2 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2238.1.S1_s_at	A	A1TS	POPTR_0007s13040	POPTR_0007s13040 (11)	scaffold_7:13219647-13219940(-) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT2G18280.2	tubby like protein 2 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2239.1.S1_s_at	A	A1TS	POPTR_0001s14360	POPTR_0001s14360 (11)	scaffold_1:11285842-11286066(+) (11)	NA	Q8R1S0	Ubiquinone biosynthesis monooxygenase COQ6	AT3G24200.2	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g62260.1	"FAD binding domain containing protein, expressed"	Medtr2g071190.2	Aromatic-ring hydroxylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.224.1.A1_at	A	A1TS	POPTR_0018s06470	POPTR_0018s06470 (10)	scaffold_18:6377230-6379015(-) (10)	NA	Q9SR77	"Heme-binding-like protein At3g10130, chloroplastic"	AT5G20140.2	SOUL heme-binding family protein 	LOC_Os06g39690.1	"SOUL heme-binding protein, putative, expressed"	Medtr2g058890.1	SOUL heme-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2240.1.S1_at	A	A1TS	POPTR_0007s00930	POPTR_0007s00930 (9)	scaffold_7:494547-496645(-) (9)	NA	Q40532	Mitogen-activated protein kinase homolog NTF4	AT2G43790.1	MAP kinase 6 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g128260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2241.1.S1_at	A	A1TA	POPTR_0004s21930	POPTR_0004s21930 (11)	scaffold_4:20881823-20882211(-) (11)	NA	Q9SZL4	RING-H2 finger protein ATL18	AT4G38140.1	RING/U-box superfamily protein 	LOC_Os07g23970.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g010210.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2242.1.S1_a_at	A	A1TS	POPTR_0001s40700	POPTR_0001s40700 (11)	scaffold_1:40294473-40294718(+) (11)	NA	Q9ASV6	"30S ribosomal protein S20, chloroplastic"	AT3G15190.1	"chloroplast 30S ribosomal protein S20, putative "	LOC_Os01g48690.1	"ribosomal protein rpS20, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2244.1.A1_s_at	A	A1TS	POPTR_0007s04020	POPTR_0007s04020 (11)	scaffold_7:2405729-2406255(+) (11)	NA	Q9LXD9	Probable pectinesterase/pectinesterase inhibitor 51	AT5G09760.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g65790.1	"pectinesterase, putative, expressed"	Medtr4g142540.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.2245.2.A1_at	A	A1TS	POPTR_0001s41290	POPTR_0001s41290 (11)	scaffold_1:40906716-40906956(-) (11)	NA	Q99LH1	Nucleolar GTP-binding protein 2	AT1G52980.1	GTP-binding family protein 	LOC_Os03g22890.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2246.1.A1_at	A	A1TS	POPTR_0002s18020	POPTR_0002s18020 (11)	scaffold_2:13911882-13913340(+) (11)	NA	Q1XDM0	Pyruvate dehydrogenase E1 component subunit alpha	AT1G01090.1	pyruvate dehydrogenase E1 alpha 	LOC_Os04g02900.1	"dehydrogenase E1 component domain containing protein, expressed"	Medtr8g074090.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
Ptp.2248.1.S1_at	A	A1TS	POPTR_0005s26610	POPTR_0005s26610 (11)	scaffold_5:24555985-24556476(+) (11)	NA	Q0JIL1	Probable nucleoredoxin 2	AT1G60420.1	DC1 domain-containing protein 	LOC_Os01g58194.1	"protein disulfide isomerase, putative, expressed"	Medtr3g157120.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2251.1.S1_at	A	A1TS	POPTR_0009s10890	POPTR_0009s10890 (10)	scaffold_9:9218472-9218802(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2252.1.A1_at	A	A1TS	POPTR_0001s39210	POPTR_0001s39210 (11)	scaffold_1:38415990-38416519(+) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G78570.1	rhamnose biosynthesis 1 	LOC_Os03g17000.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2253.1.S1_at	A	A1TS	POPTR_0003s11510	POPTR_0003s11510 (11)	scaffold_3:12282764-12283043(+) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.2254.1.S1_s_at	A	A1TS	POPTR_0005s24130	POPTR_0005s24130 (11)	scaffold_5:22768202-22768265(+) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.2255.1.S1_at	A	A1TS	POPTR_0015s08970	POPTR_0015s08970 (9)	scaffold_15:10316447-10317403(+) (9)	NA	NA	NA	AT5G63000.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os01g16510.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2256.1.S1_s_at	A	A1TS	POPTR_0001s23710	POPTR_0001s23710 (10)	scaffold_1:23097587-23098005(-) (11)	NA	Q9AUE0	Callose synthase 1	AT1G05570.1	callose synthase 1 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.2257.1.S1_x_at	A	A1TS	POPTR_0009s03610	POPTR_0009s03610 (11)	scaffold_9:4235666-4236077(+) (11)	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
Ptp.2257.3.S1_x_at	A	A1TS	POPTR_0009s03610	POPTR_0009s03610 (11)	scaffold_9:4235666-4236174(+) (11)	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
Ptp.2258.1.S1_at	A	A1TS	POPTR_0001s30840	POPTR_0001s30840 (10)	scaffold_1:29281219-29281360(+) (10)	NA	NA	NA	AT4G34190.1	stress enhanced protein 1 	LOC_Os10g25570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2258.2.S1_at	A	A1MS	POPTR_0001s30840	POPTR_0001s30840 (9)	scaffold_1:29280197-29280737(+) (9)	NA	NA	NA	AT4G34190.1	stress enhanced protein 1 	LOC_Os10g25570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2259.1.S1_at	A	A1TS	POPTR_0006s08580	POPTR_0006s08580 (10)	scaffold_6:6263048-6264646(-) (10)	NA	O13731	E3 ubiquitin-protein ligase ubr11	AT5G02310.1	proteolysis 6 	LOC_Os01g05500.2	"zinc finger protein, putative, expressed"	Medtr7g068520.1	"Zinc finger, RING-type; Zinc finger, N-recognin; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.226.1.S1_at	A	A1TS	POPTR_0014s05750	POPTR_0014s05750 (11)	scaffold_14:4303339-4304297(+) (11)	NA	P28769	T-complex protein 1 subunit alpha	AT3G20050.1	T-complex protein 1 alpha subunit 	LOC_Os04g46620.1	"T-complex protein, putative, expressed"	Medtr4g136760.1	"T-complex protein 1, alpha subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.2260.1.S1_at	A	A1TS	POPTR_0017s06870	POPTR_0017s06870 (11)	scaffold_17:5229160-5229386(-) (11)	NA	O23372	Probable histone-lysine N-methyltransferase ATXR3	AT4G15180.1	SET domain protein 2 	LOC_Os08g08210.1	"SET domain containing protein, expressed"	Medtr2g103390.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2263.1.S1_s_at	A	A1TS	POPTR_0001s18210	POPTR_0001s18210 (11)	scaffold_1:15288290-15288453(+) (11)	NA	NA	NA	AT1G15270.1	Translation machinery associated TMA7 	LOC_Os06g47230.1	"coiled-coil domain-containing protein 72, putative, expressed"	Medtr4g009030.1	"Coiled-coil domain-containing protein 72 homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2266.1.A1_s_at	A	A1TS	POPTR_0009s06200	POPTR_0009s06200 (11)	scaffold_9:6050945-6051120(+) (11)	NA	Q9LY66	"50S ribosomal protein L1, chloroplastic"	AT3G63490.1	Ribosomal protein L1p/L10e family 	LOC_Os05g32220.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr4g110000.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.2267.1.A1_at	A	A1TS	POPTR_0001s08770	POPTR_0001s08770 (11)	scaffold_1:6699306-6699506(-) (11)	NA	P46280	"Elongation factor Tu, chloroplastic"	AT4G20360.1	RAB GTPase homolog E1B 	LOC_Os02g38210.1	"elongation factor Tu, putative, expressed"	Medtr3g115100.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.2268.1.S1_s_at	A	A1TS	POPTR_0010s11970	POPTR_0010s11970 (10)	scaffold_10:12087366-12087720(-) (10)	NA	Q9ZSQ4	"Phosphoglucomutase, cytoplasmic"	AT1G70730.3	Phosphoglucomutase/phosphomannomutase family protein 	LOC_Os03g50480.1	"phosphoglucomutase, putative, expressed"	Medtr4g157910.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
Ptp.2269.1.S1_s_at	A	A1TS	POPTR_0017s11410	POPTR_0017s11410 (11)	scaffold_17:11180527-11180850(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os09g19710.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g112900.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.227.1.A1_at	A	A1TS	POPTR_0002s08340	POPTR_0002s08340 (11)	scaffold_2:5818064-5818569(+) (11)	NA	Q94420	Protein maternal effect lethal 26	AT1G21780.2	BTB/POZ domain-containing protein 	LOC_Os08g01320.2	"C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed"	Medtr3g100540.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
Ptp.2270.1.A1_at	A	A1TS	POPTR_0003s11440	POPTR_0003s11440 (10)	scaffold_3:12245314-12245858(+) (10)	NA	Q5FVD6	Maspardin	AT4G12230.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g08840.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g106940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2271.1.S1_s_at	A	A1TS	POPTR_0001s39510	POPTR_0001s39510 (11)	scaffold_1:38704033-38707849(-) (11)	NA	NA	NA	AT3G14830.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g52920.1	expressed protein	Medtr2g091120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2274.1.S1_s_at	A	A1TS	POPTR_0002s19780	POPTR_0002s19780 (10)	scaffold_2:15703009-15703659(+) (10)	NA	Q8LGG8	Universal stress protein A-like protein	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g106920.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.2275.2.S1_s_at	A	A1TS	POPTR_0010s19730	POPTR_0010s19730 (11)	scaffold_10:17567973-17570866(+) (11)	NA	P59234	Protein yippee-like	AT2G40110.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g093410.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2275.3.S1_at	A	A1TS	POPTR_0010s19730	POPTR_0010s19730 (11)	scaffold_10:17570935-17571085(+) (11)	NA	P59234	Protein yippee-like	AT2G40110.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g093410.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2278.1.A1_at	A	A1TS	POPTR_0006s14140	POPTR_0006s14140 (11)	scaffold_6:11450006-11450353(+) (11)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.228.2.A1_s_at	A	A1TS	POPTR_0014s18740	POPTR_0014s18740 (10)	scaffold_14:16110061-16110316(-) (10)	NA	Q86UA1	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2280.1.A1_s_at	A	A1TS	POPTR_0009s02050	POPTR_0009s02050 (11)	scaffold_9:2682169-2682387(+) (11)	NA	NA	NA	AT3G45600.1	tetraspanin3 	LOC_Os05g03140.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.2282.1.S1_a_at	A	A1TS	POPTR_0003s15370	POPTR_0003s15370 (11)	scaffold_3:15165268-15166325(-) (11)	NA	Q5VT66	"MOSC domain-containing protein 1, mitochondrial"	AT1G30910.1	Molybdenum cofactor sulfurase family protein 	LOC_Os09g38772.1	"MOSC domain-containing protein, mitochondrial precursor, putative, expressed"	Medtr4g090100.1	"MOSC; MOSC, N-terminal beta barrel; Pyruvate kinase, beta-barrel-like "	NA	GO:0003824|catalytic activity||GO:0030151|molybdenum ion binding||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2282.3.A1_at	A	A1TS	POPTR_0003s15370	POPTR_0003s15370 (11)	scaffold_3:15164849-15165000(-) (11)	NA	Q5VT66	"MOSC domain-containing protein 1, mitochondrial"	AT1G30910.1	Molybdenum cofactor sulfurase family protein 	LOC_Os09g38772.1	"MOSC domain-containing protein, mitochondrial precursor, putative, expressed"	Medtr4g090100.1	"MOSC; MOSC, N-terminal beta barrel; Pyruvate kinase, beta-barrel-like "	NA	GO:0003824|catalytic activity||GO:0030151|molybdenum ion binding||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2283.1.S1_at	A	A1TS	POPTR_0002s17770	POPTR_0002s17770 (10)	scaffold_2:13618632-13619104(-) (10)	NA	NA	NA	AT5G65960.1	GTP binding 	LOC_Os04g49530.1	expressed protein	Medtr8g087580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2286.1.S1_at	A	A1TS	POPTR_0009s03310	POPTR_0009s03310 (10)	scaffold_9:3981259-3981643(+) (10)	NA	Q1S9I9	Probable histone H2B.1	AT3G45980.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.2288.1.A1_at	A	A1TS	POPTR_0004s05770	POPTR_0004s05770 (10)	scaffold_4:4533222-4533695(+) (10)	NA	Q39011	Shaggy-related protein kinase eta	AT4G18710.1	Protein kinase superfamily protein 	LOC_Os05g11730.1	"CGMC_GSK.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g097890.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2289.1.S1_at	A	A1TS	POPTR_0012s14600	POPTR_0012s14600 (11)	scaffold_12:14429224-14430357(-) (11)	NA	NA	NA	AT5G51510.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1352 (InterPro:IPR009787); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g36480.1	expressed protein	AC235753_11.1	hypothetical protein AC235753.1 68157-63742 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.229.1.A1_at	A	A1TS	POPTR_0018s12730	POPTR_0018s12730 (11)	scaffold_18:13241987-13242243(-) (11)	NA	NA	NA	AT5G32440.3	Ubiquitin system component Cue protein 	LOC_Os02g09180.1	"CUE domain containing protein, expressed"	Medtr4g005650.1	Ubiquitin system component Cue; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.229.1.A1_s_at	A	A1TS	POPTR_0018s12730	POPTR_0018s12730 (11)	scaffold_18:13241469-13241956(-) (11)	NA	NA	NA	AT5G32440.3	Ubiquitin system component Cue protein 	LOC_Os02g09180.1	"CUE domain containing protein, expressed"	Medtr4g005650.1	Ubiquitin system component Cue; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2290.1.S1_at	A	A1TS	POPTR_0001s12630	POPTR_0001s12630 (11)	scaffold_1:9782888-9782955(-) (11)	NA	Q43291	60S ribosomal protein L21-1	AT1G09690.1	Translation protein SH3-like family protein 	LOC_Os03g04750.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2290.1.S1_s_at	A	A2TS	POPTR_0001s12630	POPTR_0003s15780 (11)//POPTR_0001s12630 (11)	scaffold_1:9782987-9783371(-) (10)//scaffold_3:15485862-15486264(-) (11)	NA	Q43291	60S ribosomal protein L21-1	AT1G09690.1	Translation protein SH3-like family protein 	LOC_Os03g04750.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2290.1.S1_x_at	A	A1TS	POPTR_0001s12630	POPTR_0001s12630 (11)	scaffold_1:9782888-9783439(-) (11)	NA	Q43291	60S ribosomal protein L21-1	AT1G09690.1	Translation protein SH3-like family protein 	LOC_Os03g04750.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2291.1.S1_a_at	A	A1TS	POPTR_0008s10710	POPTR_0008s10710 (11)	scaffold_8:6723152-6723262(-) (11)	NA	Q9M7X7	60S ribosomal protein L29-1	AT3G06700.3	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g137850.1	Ribosomal L29e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2291.2.S1_at	A	A1TA	POPTR_0018s14640	POPTR_0018s14640 (9)	scaffold_18:14779976-14780186(-) (9)	NA	Q6MAS9	Glycogen synthase	AT4G18240.1	starch synthase 4 	LOC_Os01g52250.4	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.2291.3.S1_at	A	A1MS	POPTR_0008s10710	POPTR_0008s10710 (11)	scaffold_8:6723489-6723576(-) (11)	NA	Q9M7X7	60S ribosomal protein L29-1	AT3G06700.3	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g137850.1	Ribosomal L29e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2292.1.A1_at	A	A1TS	POPTR_0005s11290	POPTR_0005s11290 (11)	scaffold_5:8178005-8178339(-) (11)	NA	Q39435	Rac-like GTP-binding protein RHO1	AT2G17800.2	Arabidopsis RAC-like 1 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2292.1.A1_s_at	A	A2TS	POPTR_0005s11290	POPTR_0007s09170 (11)//POPTR_0005s11290 (11)	scaffold_5:8178125-8178579(-) (11)//scaffold_7:8384456-8384898(-) (11)	NA	Q39435	Rac-like GTP-binding protein RHO1	AT2G17800.2	Arabidopsis RAC-like 1 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2295.1.A1_at	A	A1TS	POPTR_0001s06240	POPTR_0001s06240 (10)	scaffold_1:4815181-4815439(+) (10)	NA	NA	NA	AT3G54500.2	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g31360.4	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2296.1.A1_a_at	A	A1TS	POPTR_0016s05880	POPTR_0016s05880 (11)	scaffold_16:3820447-3820519(+) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os01g61420.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2297.1.A1_at	A	A1TS	POPTR_0008s04590	POPTR_0008s04590 (11)	scaffold_8:2617221-2619000(+) (11)	NA	Q9ZUU1	"Probable adenylate kinase 1, chloroplastic"	AT2G37250.1	adenosine kinase 	LOC_Os03g03820.1	"adenylate kinase, putative, expressed"	Medtr7g120720.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.2298.1.A1_at	A	A1TS	POPTR_0016s10930	POPTR_0016s10930 (10)	scaffold_16:9327380-9327586(+) (10)	NA	Q3EBL9	Vacuolar protein-sorting-associated protein 37 homolog 2	AT2G36680.1	Modifier of rudimentary (Mod(r)) protein 	LOC_Os03g08770.1	"modifier of rudimentary protein, expressed"	Medtr7g124470.1	"Modifier of rudimentary, Modr "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2299.1.S1_at	A	A1TS	POPTR_0006s03960	POPTR_0006s03960 (9)	scaffold_6:2683841-2684805(-) (9)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.23.1.S1_at	A	A1TS	POPTR_0005s02340	POPTR_0005s02340 (11)	scaffold_5:1517954-1518577(-) (11)	NA	Q9ULC4	Malignant T cell-amplified sequence 1	AT1G09150.1	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein 	LOC_Os01g21180.1	"translation machinery-associated protein 20, putative, expressed"	Medtr3g123490.1	Uncharacterized domain 2 	NA	GO:0003723|RNA binding	NA
Ptp.23.2.S1_a_at	A	A2TS	POPTR_0005s02340	POPTR_0013s01530 (9)//POPTR_0005s02340 (9)	scaffold_13:867747-867868(-) (9)//scaffold_5:1520204-1520330(-) (9)	NA	Q9ULC4	Malignant T cell-amplified sequence 1	AT1G09150.1	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein 	LOC_Os01g21180.1	"translation machinery-associated protein 20, putative, expressed"	Medtr3g123490.1	Uncharacterized domain 2 	NA	GO:0003723|RNA binding	NA
Ptp.2300.1.A1_at	A	A1TS	POPTR_0018s06210	POPTR_0018s06210 (11)	scaffold_18:5938484-5938643(+) (11)	NA	P53383	Protein mrp homolog	AT3G24430.1	ATP binding 	LOC_Os01g52170.1	expressed protein	Medtr6g102220.1	Mrp 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
Ptp.2301.1.A1_at	A	A1TS	POPTR_0017s14470	POPTR_0017s14470 (11)	scaffold_17:14504760-14505247(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
Ptp.2303.1.S1_at	A	A1TS	POPTR_0001s22160	POPTR_0001s22160 (11)	scaffold_1:20799298-20799574(-) (11)	NA	Q3T0E5	Adipocyte plasma membrane-associated protein	AT1G08470.1	strictosidine synthase-like 3 	LOC_Os03g53950.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
Ptp.2304.1.A1_s_at	A	A1TS	POPTR_0012s00600	POPTR_0012s00600 (11)	scaffold_12:298303-298741(+) (11)	NA	Q6LA42	Two-component response regulator-like APRR5	AT5G24470.1	pseudo-response regulator 5 	LOC_Os09g36220.2	"response regulator receiver domain containing protein, expressed"	Medtr3g122660.2	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
Ptp.2307.1.S1_at	A	A1TS	POPTR_0010s01880	POPTR_0010s01880 (11)	scaffold_10:2062533-2064634(-) (11)	POPTR_0010s01870 (6)	NA	NA	AT3G06330.1	RING/U-box superfamily protein 	LOC_Os02g06920.2	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr2g025600.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2307.1.S1_s_at	A	A2TS	POPTR_0010s01870	POPTR_0010s01870 (11)//POPTR_0010s01880 (11)	scaffold_10:2045252-2046462(-) (11)//scaffold_10:2062810-2064022(-) (11)	POPTR_0008s20080 (6)	NA	NA	AT3G06330.1	RING/U-box superfamily protein 	LOC_Os02g06920.2	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr2g025600.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2308.1.S1_s_at	A	A1TS	POPTR_0001s05560	POPTR_0001s05560 (11)	scaffold_1:4263838-4264120(-) (11)	NA	NA	NA	AT5G12950.1	Putative glycosyl hydrolase of unknown function (DUF1680) 	LOC_Os02g10190.1	"DUF1680 domain containing protein, putative, expressed"	Medtr4g086870.1	Protein of unknown function DUF1680 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.231.1.A1_s_at	A	A1TS	POPTR_0002s25480	POPTR_0002s25480 (11)	scaffold_2:22556600-22559763(+) (11)	NA	NA	NA	AT2G20230.1	Tetraspanin family protein 	LOC_Os06g51480.1	expressed protein	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.2310.1.A1_s_at	A	A1TS	POPTR_0001s14660	POPTR_0001s14660 (11)	scaffold_1:11505371-11505622(-) (10)//scaffold_1:11544526-11544781(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.2311.1.S1_at	A	A1TS	POPTR_0002s22600	POPTR_0002s22600 (10)	scaffold_2:19365688-19366246(-) (10)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.2313.1.A1_at	A	A1TS	POPTR_0002s12760	POPTR_0002s12760 (11)	scaffold_2:9501765-9504276(+) (11)	NA	Q6PBN4	"Coenzyme Q-binding protein COQ10 homolog, mitochondrial"	AT4G17650.1	Polyketide cyclase / dehydrase and lipid transport protein 	LOC_Os01g56560.1	"cyclase/dehydrase family protein, expressed"	Medtr3g147740.1	"aromatic-rich family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2316.1.S1_at	A	A1TS	POPTR_0002s18610	POPTR_0002s18610 (11)	scaffold_2:14490580-14491879(+) (11)	NA	P34791	"Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic"	AT3G62030.3	rotamase CYP 4 	LOC_Os01g18210.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr7g134340.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.2318.1.S1_at	A	A1TS	POPTR_0019s09020	POPTR_0019s09020 (11)	scaffold_19:10610071-10610551(-) (11)	NA	NA	NA	AT2G40800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56430.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g07382.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2320.1.S1_a_at	A	A1TS	POPTR_0001s16730	POPTR_0001s16730 (11)	scaffold_1:13513781-13514030(-) (11)	NA	Q9SYG7	Aldehyde dehydrogenase family 7 member B4	AT1G54100.2	aldehyde dehydrogenase 7B4 	LOC_Os09g26880.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g049500.1	Aldehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.2322.1.A1_at	A	A1TS	POPTR_0003s21080	POPTR_0003s21080 (11)	scaffold_3:19378802-19378953(+) (11)	NA	P28752	Tubulin alpha-1 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2322.1.A1_x_at	A	A1TS	POPTR_0003s21080	POPTR_0003s21080 (11)	scaffold_3:19378760-19378953(+) (11)	NA	P28752	Tubulin alpha-1 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2323.3.A1_at	A	A1TA	POPTR_0014s06790	POPTR_0014s06790 (9)	scaffold_14:5123706-5126639(-) (10)	POPTR_0014s06820 (6)	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	AC233070_7.1	Cytochrome P450 AC233070.4 33530-28470 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2324.1.A1_s_at	A	A1TS	POPTR_0007s13060	POPTR_0007s13060 (11)	scaffold_7:13243339-13244134(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G66530.2	Galactose mutarotase-like superfamily protein 	LOC_Os09g15820.1	"aldose 1-epimerase, putative, expressed"	Medtr5g020530.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.2327.1.A1_at	A	A1TS	POPTR_0013s00760	POPTR_0013s00760 (11)	scaffold_13:391566-391954(-) (11)	NA	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2329.1.S1_s_at	A	A1TS	POPTR_0009s15590	POPTR_0009s15590 (11)	scaffold_9:12026348-12026648(+) (11)	NA	Q23892	Lysosomal beta glucosidase	AT5G20950.2	Glycosyl hydrolase family protein 	LOC_Os03g53800.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.233.1.A1_a_at	A	A1TS	POPTR_0008s18280	POPTR_0008s18280 (10)	scaffold_8:12238079-12238189(-) (10)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.233.1.A1_at	A	A1MS	POPTR_0008s18280	POPTR_0008s18280 (11)	scaffold_8:12237804-12238058(-) (11)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.233.2.A1_at	A	A1TS	POPTR_0008s18280	POPTR_0008s18280 (10)	scaffold_8:12235807-12236000(-) (10)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.2330.1.S1_at	A	A1TS	POPTR_0001s21550	POPTR_0001s21550 (11)	scaffold_1:20054954-20055242(-) (11)	NA	NA	NA	AT1G15200.1	protein-protein interaction regulator family protein 	LOC_Os03g49520.1	"pinin/SDK/memA protein, putative, expressed"	Medtr2g007930.1	"Pinin/SDK/memA protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2332.2.A1_a_at	A	A1TS	POPTR_0008s19320	POPTR_0008s19320 (11)	scaffold_8:13273356-13275442(-) (11)	NA	Q91V92	ATP-citrate synthase	AT1G60810.1	ATP-citrate lyase A-2 	LOC_Os11g47330.1	"ATP-grasp domain containing protein, expressed"	Medtr5g035230.1	"ATP-grasp fold, succinyl-CoA synthetase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2334.1.A1_at	A	A2TS	POPTR_0006s05470	POPTR_0006s05470 (11)//POPTR_0831s00200 (10)	scaffold_6:3869831-3870263(-) (11)//scaffold_831:5736-6167(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2335.1.A1_at	A	A1TS	POPTR_0010s06770	POPTR_0010s06770 (11)	scaffold_10:8038211-8038631(-) (11)	NA	Q5AS82	GDP-mannose transporter 1	AT1G76340.1	golgi nucleotide sugar transporter 3 	LOC_Os03g11590.1	"integral membrane protein, putative, expressed"	Medtr1g126830.1	"Integral membrane protein, putative "	NA	NA	GO:0016020|membrane
Ptp.2337.1.S1_at	A	A1TS	POPTR_0004s04930	POPTR_0004s04930 (11)	scaffold_4:3698396-3698897(-) (11)	NA	P38460	Uncharacterized mitochondrial protein ymf17	AT5G02050.1	Mitochondrial glycoprotein family protein 	NA	NA	Medtr5g088110.1	Mitochondrial glycoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2338.1.S1_s_at	A	A1TS	POPTR_0011s11350	POPTR_0011s11350 (11)	scaffold_11:14075548-14075651(+) (11)	NA	Q9LKA5	"Uncharacterized protein At3g15000, mitochondrial"	AT3G15000.1	cobalt ion binding 	LOC_Os09g33480.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2339.1.S1_at	A	A1TS	POPTR_0015s13910	POPTR_0015s13910 (11)	scaffold_15:13674955-13675302(-) (11)	NA	NA	NA	AT5G52060.1	BCL-2-associated athanogene 1 	LOC_Os09g35630.1	"BAG domain-containing protein, putative, expressed"	Medtr1g129370.1	"Ubiquitin; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.234.1.A1_at	A	A1TS	POPTR_0003s05990	POPTR_0003s05990 (11)	scaffold_3:7354270-7355123(+) (11)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.5	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.234.1.A1_s_at	A	A2TS	POPTR_0001s17280	POPTR_0003s05990 (11)//POPTR_0001s17280 (11)	scaffold_1:14100340-14100724(-) (11)//scaffold_3:7354733-7355102(+) (11)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.2	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.2340.1.S1_at	A	A1TS	POPTR_0004s09020	POPTR_0004s09020 (11)	scaffold_4:7581787-7582253(+) (11)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2341.1.S1_at	A	A1TS	POPTR_0019s10490	POPTR_0019s10490 (11)	scaffold_19:12051099-12051475(+) (11)	NA	NA	NA	AT1G33800.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2342.1.A1_s_at	A	A1TS	POPTR_0018s08370	POPTR_0018s08370 (11)	scaffold_18:9311256-9311290(-) (11)	NA	Q86UW6	NEDD4-binding protein 2	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.4	"smr domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2343.1.S1_at	A	A1TS	POPTR_0001s00660	POPTR_0001s00660 (11)	scaffold_1:563594-565013(+) (11)	NA	NA	NA	AT5G51400.1	PLAC8 family protein 	LOC_Os03g01210.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr7g041040.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2344.1.A1_at	A	A1TS	POPTR_0005s21750	POPTR_0005s21750 (11)	scaffold_5:20854775-20855022(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2344.1.A1_x_at	A	A1TS	POPTR_0005s21750	POPTR_0005s21750 (11)	scaffold_5:20854775-20855186(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2345.1.S1_at	A	A2TS	POPTR_0008s02000	POPTR_0008s02000 (11)//POPTR_0341s00210 (11)	scaffold_341:9382-9769(+) (11)//scaffold_8:956407-956759(+) (11)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2347.1.A1_at	A	A1TS	POPTR_0004s21400	POPTR_0004s21400 (11)	scaffold_4:20546497-20547742(+) (11)	POPTR_0009s16660 (7)	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.1	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2347.1.A1_x_at	A	A1TS	POPTR_0004s21400	POPTR_0004s21400 (11)	scaffold_4:20546497-20547760(+) (11)	POPTR_0009s16660 (7)	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.1	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2348.2.S1_s_at	A	A1TS	POPTR_0016s12720	POPTR_0016s12720 (10)	scaffold_16:12098581-12099133(+) (10)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.235.1.S1_s_at	A	A1TS	POPTR_0006s00650	POPTR_0006s00650 (11)	scaffold_6:341175-341531(-) (11)	NA	Q8LFN9	Probable ADP-ribosylation factor GTPase-activating protein AGD13	AT5G47710.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os09g07800.1	expressed protein	Medtr2g032750.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2351.1.S1_at	A	A1TS	POPTR_0018s13940	POPTR_0018s13940 (10)	scaffold_18:14215597-14215729(-) (10)	NA	NA	NA	AT4G30010.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g07910.2	"fiber protein Fb15, putative, expressed"	Medtr2g042700.1	"fiber protein Fb15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2354.1.S1_s_at	A	A1TS	POPTR_0010s25300	POPTR_0010s25300 (11)	scaffold_10:21036189-21039064(-) (11)	NA	Q54NC1	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr3g111130.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2358.1.S1_at	A	A1TS	POPTR_0012s05410	POPTR_0012s05410 (11)	scaffold_12:5050550-5051766(-) (11)	NA	Q9C9C4	"Enolase 1, chloroplastic"	AT1G74030.1	enolase 1 	LOC_Os09g20820.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.2359.2.S1_a_at	A	A1TS	POPTR_0006s05000	POPTR_0006s05000 (11)	scaffold_6:3481602-3483642(-) (11)	NA	O22944	Protein N-terminal glutamine amidohydrolase	AT2G41760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function WDYHV (InterPro:IPR019161); Has 201 Blast hits to 201 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os05g32190.1	"tungus CG8253-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2359.2.S1_s_at	A	A1TS	POPTR_0006s05000	POPTR_0006s05000 (11)	scaffold_6:3482250-3484149(-) (11)	NA	O22944	Protein N-terminal glutamine amidohydrolase	AT2G41760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function WDYHV (InterPro:IPR019161); Has 201 Blast hits to 201 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os05g32190.1	"tungus CG8253-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.236.1.S1_s_at	A	A1TS	POPTR_0014s14420	POPTR_0014s14420 (11)	scaffold_14:10575514-10575588(+) (11)	NA	Q9C5Z2	Eukaryotic translation initiation factor 3 subunit H	AT1G10840.1	translation initiation factor 3 subunit H1 	LOC_Os04g30780.1	"eukaryotic translation initiation factor 3 subunit H, putative, expressed"	Medtr7g021910.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2360.1.S1_at	A	A1TS	POPTR_0019s09740	POPTR_0019s09740 (11)	scaffold_19:11336853-11336955(-) (11)	NA	Q9C9H5	Endoglucanase 9	AT1G71380.1	cellulase 3 	LOC_Os04g36610.1	"endoglucanase, putative"	Medtr3g016610.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2360.1.S1_s_at	A	A1TS	POPTR_0019s09740	POPTR_0019s09740 (11)	scaffold_19:11337034-11337416(-) (11)	NA	Q9C9H5	Endoglucanase 9	AT1G71380.1	cellulase 3 	LOC_Os04g36610.1	"endoglucanase, putative"	Medtr3g016610.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2361.1.S1_at	A	A1TS	POPTR_0008s18260	POPTR_0008s18260 (11)	scaffold_8:12224832-12225415(-) (11)	NA	O04450	T-complex protein 1 subunit epsilon	AT1G24510.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g36700.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.2363.1.S1_s_at	A	A1TS	POPTR_0006s11620	POPTR_0006s11620 (10)	scaffold_6:8828262-8828530(+) (10)	NA	Q08047	"1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic"	AT5G03650.1	starch branching enzyme 2.2 	LOC_Os02g32660.1	"1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed"	Medtr7g126840.1	"Alpha amylase, C-terminal all-beta; "	GO:0005975|carbohydrate metabolic process	GO:0043169|cation binding||GO:0003824|catalytic activity	NA
Ptp.2364.1.S1_at	A	A1TS	POPTR_0011s05990	POPTR_0011s05990 (10)	scaffold_11:6013732-6014639(-) (10)	NA	Q6Z7L8	Rac-like GTP-binding protein 7	AT5G45970.1	RAC-like 2 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr2g132410.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2365.1.S1_at	A	A1MS	POPTR_0009s01640	POPTR_0009s01640 (11)	scaffold_9:2175533-2175813(+) (11)	NA	NA	NA	AT2G28320.1	Pleckstrin homology (PH) and lipid-binding START domains-containing protein 	LOC_Os10g33930.1	"DUF1336 domain containing protein, expressed"	Medtr2g110100.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2368.1.S1_s_at	A	A1TS	POPTR_0002s21340	POPTR_0002s21340 (10)	scaffold_2:17780043-17781259(+) (10)	NA	P40782	Cyprosin (Fragment)	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.2369.1.S1_s_at	A	A1TS	POPTR_0001s17940	POPTR_0001s17940 (11)	scaffold_1:14875823-14876155(-) (11)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.1	"coatomer subunit beta, putative, expressed"	AC234703_19.3	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.2369.2.S1_at	A	A1TS	POPTR_0001s17940	POPTR_0001s17940 (11)	scaffold_1:14874748-14875014(-) (11)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.1	"coatomer subunit beta, putative, expressed"	AC234703_19.3	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.237.1.S2_s_at	A	A1TS	POPTR_0004s23490	POPTR_0004s23490 (11)	scaffold_4:22204163-22204561(-) (11)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.2370.1.A1_at	A	A1TS	POPTR_0008s10480	POPTR_0008s10480 (11)	scaffold_8:6566388-6566440(-) (11)	NA	Q54YA0	Probable ATP-citrate synthase	AT3G06650.1	ATP-citrate lyase B-1 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2371.1.A1_at	A	A1TS	POPTR_0011s12760	POPTR_0011s12760 (10)	scaffold_11:15446194-15446677(-) (10)	NA	Q8L6Y1	Ubiquitin carboxyl-terminal hydrolase 14	AT3G20630.1	ubiquitin-specific protease 14 	LOC_Os01g08200.1	"ubiquitin carboxyl-terminal hydrolase 14, putative, expressed"	Medtr2g095540.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; UBA-like "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
Ptp.2373.1.A1_at	A	A1TS	POPTR_0001s16030	POPTR_0001s16030 (10)	scaffold_1:12846575-12847001(-) (10)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT1G52310.1	protein kinase family protein / C-type lectin domain-containing protein 	LOC_Os01g01410.1	"TKL_IRAK_C-LEC.1 - TKL_IRAK_C-LEC has homology to C-type lectin receptors, expressed"	Medtr2g126640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2374.1.S1_at	A	A1TS	POPTR_0015s08190	POPTR_0015s08190 (9)	scaffold_15:9447273-9447556(-) (9)	NA	Q9S795	"Betaine aldehyde dehydrogenase 1, chloroplastic"	AT1G74920.1	aldehyde dehydrogenase 10A8 	LOC_Os04g39020.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125020.1	"Betaine aldehyde dehydrogenase 1, chloroplast precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.2375.1.A1_at	A	A1TS	POPTR_0014s17230	POPTR_0014s17230 (11)	scaffold_14:13366572-13367543(-) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2379.2.S1_a_at	A	A1TS	POPTR_0012s08010	POPTR_0012s08010 (11)	scaffold_12:9021363-9021956(+) (11)	NA	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.238.1.A1_at	A	A1TS	POPTR_0018s13570	POPTR_0018s13570 (9)	scaffold_18:13851534-13852242(-) (9)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2380.1.A1_s_at	A	A1TS	POPTR_0001s30020	POPTR_0001s30020 (11)	scaffold_1:28595468-28595736(-) (11)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.2381.1.S1_at	A	A1TS	POPTR_0016s10420	POPTR_0016s10420 (11)	scaffold_16:8650941-8651425(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g018920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2382.2.A1_a_at	A	A1TS	POPTR_0005s23140	POPTR_0005s23140 (11)	scaffold_5:21958073-21958117(+) (11)	NA	Q75HV0	Cyclin-P3-1	AT3G63120.1	cyclin p1;1 	LOC_Os05g33040.3	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2383.1.S1_at	A	A1MS	POPTR_0012s05490	POPTR_0012s05490 (9)	scaffold_12:5156556-5156782(-) (9)	NA	Q7ZXX2	Kinesin-like protein KIF19	AT1G18550.1	ATP binding microtubule motor family protein 	LOC_Os01g42070.1	"kinesin motor domain containing protein, putative, expressed"	Medtr8g115780.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.2386.1.A1_at	A	A1TS	POPTR_0014s03590	POPTR_0014s03590 (11)	scaffold_14:2867644-2868177(-) (11)	NA	Q9SX97	Dof zinc finger protein DOF1.6	AT1G47655.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2388.1.A1_s_at	A	A1TS	POPTR_0001s03860	POPTR_0001s03860 (11)	scaffold_1:3110395-3111444(-) (11)	NA	NA	NA	AT4G26410.1	Uncharacterised conserved protein UCP022280 	LOC_Os03g20860.1	expressed protein	Medtr4g115230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2390.2.A1_a_at	A	A1TS	POPTR_0003s05520	POPTR_0003s05520 (10)	scaffold_3:6822028-6822093(-) (10)	NA	NA	NA	AT1G80000.2	CASC3/Barentsz eIF4AIII binding 	LOC_Os01g41190.2	"glycine-rich protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2391.2.S1_at	A	A1TA	POPTR_0004s22020	POPTR_0004s22020 (10)	scaffold_4:20967332-20967878(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2392.1.A1_at	A	A1TS	POPTR_0003s20170	POPTR_0003s20170 (10)	scaffold_3:18744736-18745080(+) (10)	NA	NA	NA	AT3G08550.1	elongation defective 1 protein / ELD1 protein 	LOC_Os01g13200.1	"abscisic acid insensitive 8, putative, expressed"	Medtr3g026170.1	"ABI8/ELD1/KOB1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2393.1.S1_at	A	A1TS	POPTR_0014s10670	POPTR_0014s10670 (11)	scaffold_14:7946044-7946829(+) (11)	NA	Q8K2Y7	"39S ribosomal protein L47, mitochondrial"	AT1G07830.1	ribosomal protein L29 family protein 	LOC_Os06g03790.1	"39S ribosomal protein L47, mitochondrial precursor, putative, expressed"	Medtr5g015940.1	Ribosomal protein L29; Alpha-helical ferredoxin; Mitochondrial 39-S ribosomal L47 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005761|mitochondrial ribosome
Ptp.2393.1.S1_s_at	A	A1TS	POPTR_0014s10670	POPTR_0014s10670 (11)	scaffold_14:7946907-7947156(+) (11)	NA	Q8K2Y7	"39S ribosomal protein L47, mitochondrial"	AT1G07830.1	ribosomal protein L29 family protein 	LOC_Os06g03790.1	"39S ribosomal protein L47, mitochondrial precursor, putative, expressed"	Medtr5g015940.1	Ribosomal protein L29; Alpha-helical ferredoxin; Mitochondrial 39-S ribosomal L47 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005761|mitochondrial ribosome
Ptp.2394.1.S1_a_at	A	A1TS	POPTR_0006s09380	POPTR_0006s09380 (10)	scaffold_6:6891635-6892505(-) (10)	NA	NA	NA	AT3G53990.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g63010.1	"universal stress protein domain containing protein, putative, expressed"	Medtr7g071220.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.2396.1.A1_at	A	A1TS	POPTR_0003s09590	POPTR_0003s09590 (10)	scaffold_3:10885140-10885210(-) (10)	NA	Q38908	Probable xyloglucan endotransglucosylase/hydrolase protein 30	AT1G32170.1	xyloglucan endotransglucosylase/hydrolase 30 	LOC_Os02g03550.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr5g029020.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2396.1.A1_s_at	A	A1TS	POPTR_0003s09590	POPTR_0003s09590 (11)	scaffold_3:10885311-10885618(-) (11)	NA	Q38908	Probable xyloglucan endotransglucosylase/hydrolase protein 30	AT1G32170.1	xyloglucan endotransglucosylase/hydrolase 30 	LOC_Os02g03550.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr5g029020.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2397.1.A1_at	A	A1TS	POPTR_0006s07190	POPTR_0006s07190 (10)	scaffold_6:5169778-5170290(+) (10)	NA	Q9VQP9	Putative oligosaccharyltransferase complex subunit CG9662	AT4G29870.1	Oligosaccharyltransferase complex/magnesium transporter family protein 	LOC_Os02g21080.1	"AGAP008475-PA, putative, expressed"	Medtr2g043130.1	"UPF0527 membrane protein B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2398.1.S1_s_at	A	A1TS	POPTR_0007s06770	POPTR_0007s06770 (10)	scaffold_7:5137484-5137517(+) (10)	NA	Q9SJ12	"Probable ATP synthase 24 kDa subunit, mitochondrial"	AT2G21870.1	copper ion binding;cobalt ion binding;zinc ion binding 	LOC_Os02g03860.1	"mitochondrial ATP synthase precursor, putative, expressed"	Medtr4g141050.1	"Probable ATP synthase 24 kDa subunit, mitochondrial precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2399.1.S1_s_at	A	A1TS	POPTR_0004s17810	POPTR_0004s17810 (11)	scaffold_4:17845135-17845375(+) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022110.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.24.1.S1_s_at	A	A1TS	POPTR_0017s13710	POPTR_0017s13710 (11)	scaffold_17:13791182-13793996(+) (11)	NA	NA	NA	AT5G64130.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os05g49160.2	expressed protein	Medtr2g077020.1	Lg106-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2400.1.S1_at	A	A1TS	POPTR_0008s08910	POPTR_0008s08910 (9)	scaffold_8:5499013-5499655(+) (10)//scaffold_8:5523526-5524167(+) (9)	NA	Q8H1U5	Anaphase-promoting complex subunit 2	AT2G04660.1	anaphase-promoting complex/cyclosome 2 	LOC_Os04g40830.1	"cullin family domain containing protein, putative, expressed"	Medtr4g111940.1	Cullin; N-6 Adenine-specific DNA methylase 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.2402.1.S1_s_at	A	A1TS	POPTR_0006s26400	POPTR_0006s26400 (11)	scaffold_6:24615817-24617806(-) (11)	NA	Q54CV3	Coiled-coil domain-containing protein 93 homolog	AT4G32560.2	paramyosin-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2403.1.S1_s_at	A	A1TS	POPTR_0001s15290	POPTR_0001s15290 (11)	scaffold_1:12117405-12117508(-) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2404.1.S1_at	A	A1TS	POPTR_0005s18480	POPTR_0005s18480 (10)	scaffold_5:16719412-16719707(+) (10)	NA	NA	NA	AT5G67210.1	Protein of unknown function (DUF579) 	LOC_Os06g47310.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr4g130370.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2406.2.S1_a_at	A	A1TS	POPTR_0003s21070	POPTR_0003s21070 (11)	scaffold_3:19366088-19366956(-) (11)	NA	P0C582	Putative mitochondrial 2-oxoglutarate/malate carrier protein	AT5G19760.1	Mitochondrial substrate carrier family protein 	LOC_Os05g11780.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g134510.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2408.1.A1_at	A	A1TS	POPTR_0002s12150	POPTR_0002s12150 (11)	scaffold_2:9011340-9011806(-) (11)	POPTR_1058s00200 (6)	O74913	Uncharacterized protein C757.02c	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2409.1.S1_at	A	A1TS	POPTR_0013s07550	POPTR_0013s07550 (11)	scaffold_13:6382959-6383454(+) (11)	NA	NA	NA	AT5G16680.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os12g24540.1	"PHD-finger family protein, expressed"	Medtr5g007340.1	"Zinc finger, FYVE/PHD-type; "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2412.1.A1_s_at	A	A1TS	POPTR_0014s12060	POPTR_0014s12060 (11)	scaffold_14:8928174-8928459(+) (11)	NA	O81635	Kinesin-4	AT2G47500.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.2414.1.S1_at	A	A1TS	POPTR_0004s16220	POPTR_0004s16220 (11)	scaffold_4:16627671-16628855(-) (11)	NA	NA	NA	AT4G39300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr4g095570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2415.1.A1_s_at	A	A1TS	POPTR_0002s03810	POPTR_0002s03810 (11)	scaffold_2:2365642-2365778(-) (11)	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.2416.2.S1_s_at	A	A1TS	POPTR_0001s29670	POPTR_0001s29670 (11)	scaffold_1:28311245-28311421(-) (11)	NA	P33629	Tubulin alpha chain	AT4G14960.2	Tubulin/FtsZ family protein 	LOC_Os11g14220.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2419.1.S1_at	A	A1TS	POPTR_0006s28360	POPTR_0006s28360 (11)	scaffold_6:26062394-26062596(-) (11)	NA	Q96361	ADP-ribosylation factor 1	AT2G24765.1	ADP-ribosylation factor 3 	LOC_Os08g15040.1	"ADP-ribosylation factor, putative, expressed"	Medtr8g128220.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2420.1.S1_at	A	A1TS	POPTR_0002s09625	POPTR_0002s09625 (9)	scaffold_2:6897912-6898445(-) (9)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os05g07740.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g019670.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.2421.2.S1_a_at	A	A1TS	POPTR_0012s09190	POPTR_0012s09190 (10)	scaffold_12:10252832-10253151(+) (10)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os01g68060.1	"copine, putative, expressed"	Medtr6g022780.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2425.1.S1_at	A	A1TS	POPTR_0008s06460	POPTR_0008s06460 (11)	scaffold_8:3829016-3829538(-) (11)	NA	O04197	Coronatine-insensitive protein 1	AT2G39940.1	RNI-like superfamily protein 	LOC_Os05g37690.1	"OsFBL23 - F-box domain and LRR containing protein, expressed"	Medtr5g089200.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2427.1.A1_at	A	A1MS	POPTR_0008s20030	POPTR_0008s20030 (11)	scaffold_8:13830556-13830693(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2427.1.A1_s_at	A	A1TS	POPTR_0008s20030	POPTR_0008s20030 (11)	scaffold_8:13830746-13831047(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2428.1.S1_at	A	A1TS	POPTR_0011s14970	POPTR_0011s14970 (11)	scaffold_11:17180685-17181458(-) (11)	NA	O81635	Kinesin-4	AT5G65930.2	kinesin-like calmodulin-binding protein (ZWICHEL) 	LOC_Os04g57140.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g025080.1	"Band 4.1; Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4; Kinesin, motor region; Prismane-like "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	GO:0005856|cytoskeleton
Ptp.243.1.A1_at	A	A1TS	POPTR_0006s11140	POPTR_0006s11140 (10)	scaffold_6:8455933-8456241(+) (10)	NA	Q9XG77	Proteasome subunit alpha type-6	AT2G05840.1	20S proteasome subunit PAA2 	LOC_Os03g08280.2	"peptidase, T1 family, putative, expressed"	Medtr2g071490.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.2430.1.A1_at	A	A1TS	POPTR_0008s01200	POPTR_0008s01200 (11)	scaffold_8:579270-579744(+) (11)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20790.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.2431.1.A1_at	A	A1TS	POPTR_0014s11570	POPTR_0014s11570 (11)	scaffold_14:8570774-8570959(-) (11)	NA	Q8VZF3	"Probable glutamyl endopeptidase, chloroplastic"	AT2G47390.1	Prolyl oligopeptidase family protein 	LOC_Os03g19410.1	"OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g132980.1	"Peptidase S9, prolyl oligopeptidase active site region "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
Ptp.2432.1.S1_a_at	A	A1TS	POPTR_0015s01150	POPTR_0015s01150 (11)	scaffold_15:707768-708744(+) (11)	NA	Q9T096	Protein yippee-like At4g27745	AT4G27745.1	Yippee family putative zinc-binding protein 	LOC_Os12g29960.1	"yippee zinc-binding protein, putative"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2433.1.S1_s_at	A	A1TS	POPTR_0006s02150	POPTR_0006s02150 (11)	scaffold_6:1403167-1403542(-) (11)	NA	Q9LIE5	Protein FAR-RED ELONGATED HYPOCOTYL 3	AT3G22170.2	far-red elongated hypocotyls 3 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.2434.1.S1_x_at	A	A1TS	POPTR_0009s02370	POPTR_0009s02370 (11)	scaffold_9:3120534-3121054(+) (11)	NA	Q84WM9	Elongation factor 1-beta 1	AT5G12110.1	"Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6 "	LOC_Os07g46750.1	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.2437.1.S1_at	A	A1TS	POPTR_0008s11980	POPTR_0008s11980 (11)	scaffold_8:7717224-7718295(-) (11)	NA	NA	NA	AT1G13380.1	Protein of unknown function (DUF1218) 	LOC_Os09g10910.3	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2438.1.A1_at	A	A2TS	POPTR_0010s22580	POPTR_0010s22610 (11)//POPTR_0010s22580 (11)	scaffold_10:19442002-19442324(-) (11)//scaffold_10:19453805-19454121(+) (11)	NA	NA	NA	AT2G35790.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724); Has 116 Blast hits to 116 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os03g63680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2439.1.S1_at	A	A1TS	POPTR_0004s16950	POPTR_0004s16950 (9)	scaffold_4:17324372-17324917(-) (9)	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT4G38960.1	B-box type zinc finger family protein 	LOC_Os09g35880.1	"B-box zinc finger family protein, putative, expressed"	Medtr5g021510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.2440.1.S1_x_at	A	A1TS	POPTR_0001s18730	POPTR_0001s18730 (11)	scaffold_1:15868245-15868976(+) (11)	NA	Q41951	Aquaporin TIP2-1	AT3G16240.1	delta tonoplast integral protein 	LOC_Os06g22960.1	"aquaporin protein, putative, expressed"	Medtr8g015170.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2440.2.A1_s_at	A	A1TS	POPTR_0018s14020	POPTR_0018s14020 (11)	scaffold_18:14280750-14281110(+) (11)	NA	O65351	Subtilisin-like protease	AT4G30020.1	PA-domain containing subtilase family protein 	LOC_Os06g48650.2	"OsSub52 - Putative Subtilisin homologue, expressed"	Medtr2g042580.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	GO:0005618|cell wall||GO:0016020|membrane
Ptp.2441.1.S1_x_at	A	A1TS	POPTR_0017s05770	POPTR_0017s05770 (11)	scaffold_17:4498742-4500543(-) (11)	NA	Q42896	Fructokinase-2	AT3G59480.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g66940.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2442.1.S1_s_at	A	A1TS	POPTR_0001s21520	POPTR_0001s21520 (11)	scaffold_1:20009425-20009897(-) (11)	NA	P43255	COP9 signalosome complex subunit 8	AT4G14110.1	"COP9 signalosome, subunit CSN8 "	LOC_Os04g34930.1	"COP9 signalosome complex subunit 8, putative, expressed"	Medtr2g007990.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2443.1.A1_at	A	A1TS	POPTR_0004s01310	POPTR_0004s01310 (9)	scaffold_4:711953-712340(+) (9)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2445.1.S1_at	A	A1TS	POPTR_0004s18730	POPTR_0004s18730 (11)	scaffold_4:18507698-18508355(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os06g46500.1	"monocopper oxidase, putative, expressed"	Medtr2g104340.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2446.1.S1_s_at	A	A1TS	POPTR_0004s03230	POPTR_0004s03230 (11)	scaffold_4:2174372-2174667(-) (11)	NA	NA	NA	AT4G05150.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os07g37040.1	"PB1 domain containing protein, expressed"	Medtr4g124660.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2448.1.S1_at	A	A1TS	POPTR_0002s24410	POPTR_0002s24410 (11)	scaffold_2:21786902-21788541(+) (11)	NA	Q9SVR0	60S ribosomal protein L13a-3	AT4G13170.1	Ribosomal protein L13 family protein 	LOC_Os03g54890.1	"ribosomal protein L13, putative, expressed"	Medtr5g091220.1	"Ribosomal protein L13, archea and eukaryotic form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2450.1.S1_at	A	A1TS	POPTR_0004s17030	POPTR_0004s17030 (11)	scaffold_4:17404317-17404640(-) (11)	NA	P59227	V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5	AT4G34720.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os02g34510.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.2453.1.S1_at	A	A1TS	POPTR_0015s13500	POPTR_0015s13500 (10)	scaffold_15:13419530-13419709(-) (10)	NA	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os10g35870.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.2456.2.S1_a_at	A	A1TS	POPTR_0007s14910	POPTR_0007s14910 (11)	scaffold_7:14600677-14602231(-) (11)	NA	Q66XS7	"NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial"	AT5G67590.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os07g39710.1	"NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed"	Medtr8g101670.1	ETC complex I subunit conserved region 	GO:0022900|electron transport chain	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH"""	GO:0005743|mitochondrial inner membrane
Ptp.2457.1.S1_s_at	A	A1TS	POPTR_0013s00550	POPTR_0013s00550 (11)	scaffold_13:260407-260822(-) (11)	NA	A9PDZ7	S-adenosylmethionine synthase 2	AT3G17390.1	S-adenosylmethionine synthetase family protein 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.2461.1.S1_at	A	A1TS	POPTR_0006s08670	POPTR_0006s08670 (11)	scaffold_6:6352120-6352735(+) (11)	NA	Q9LZM1	Oxysterol-binding protein-related protein 3A	AT5G02100.1	Oxysterol-binding family protein 	LOC_Os03g16690.1	"oxysterol-binding protein, putative, expressed"	Medtr4g083830.1	Oxysterol-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2462.1.S1_at	A	A1TS	POPTR_0014s08500	POPTR_0014s08500 (10)	scaffold_14:6311614-6311880(-) (10)	NA	O04603	"50S ribosomal protein L5, chloroplastic"	AT4G01310.1	Ribosomal L5P family protein 	LOC_Os03g03360.1	"ribosomal protein L5, putative, expressed"	Medtr7g088500.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2463.1.S1_a_at	A	A1TS	POPTR_0013s03890	POPTR_0013s03890 (11)	scaffold_13:2551697-2551736(+) (11)//scaffold_876:4951-4984(-) (9)	NA	P02877	Pro-hevein	AT3G04720.1	pathogenesis-related 4 	LOC_Os11g37950.1	"WIP3 - Wound-induced protein precursor, expressed"	Medtr6g027840.1	"Glycoside hydrolase, family 19; Barwin-related endoglucanase "	GO:0050832|defense response to fungus||GO:0042742|defense response to bacterium	GO:0008061|chitin binding	NA
Ptp.2463.1.S1_s_at	A	A1TS	POPTR_0013s03890	POPTR_0013s03890 (11)	scaffold_13:2551182-2551571(+) (11)	NA	P02877	Pro-hevein	AT3G04720.1	pathogenesis-related 4 	LOC_Os11g37950.1	"WIP3 - Wound-induced protein precursor, expressed"	Medtr6g027840.1	"Glycoside hydrolase, family 19; Barwin-related endoglucanase "	GO:0050832|defense response to fungus||GO:0042742|defense response to bacterium	GO:0008061|chitin binding	NA
Ptp.2464.1.A1_s_at	A	A1TS	POPTR_0007s06050	POPTR_0007s06050 (9)	scaffold_7:4197507-4199212(+) (9)	NA	Q9M5M6	60S ribosomal protein L30	AT1G77940.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2467.1.A1_at	A	A1TS	POPTR_0019s14590	POPTR_0019s14590 (11)	scaffold_19:15331318-15331591(+) (11)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2467.1.A1_x_at	A	A1TS	POPTR_0019s14590	POPTR_0019s14590 (11)	scaffold_19:15331259-15331591(+) (11)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2472.1.A1_s_at	A	A1TS	POPTR_0001s44450	POPTR_0001s44450 (11)	scaffold_1:44870688-44871101(+) (11)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.2	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.2473.1.A1_s_at	A	A1TS	POPTR_0005s21870	POPTR_0005s21870 (11)	scaffold_5:20921060-20921116(-) (11)	NA	Q9SQI2	Protein GIGANTEA	AT1G22770.1	gigantea protein (GI) 	LOC_Os01g08700.6	"GIGANTEA, putative, expressed"	Medtr1g124650.2	"Protein GIGANTEA, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2474.1.S1_at	A	A1MS	POPTR_0010s12350	POPTR_0010s12350 (10)	scaffold_10:12378181-12378493(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2475.2.A1_a_at	A	A1TS	POPTR_0010s10300	POPTR_0010s10300 (11)	scaffold_10:10836352-10836615(-) (11)	NA	P00693	Alpha-amylase type A isozyme	AT1G69830.1	alpha-amylase-like 3 	LOC_Os01g51754.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
Ptp.2477.1.S1_s_at	A	A1TS	POPTR_0001s00410	POPTR_0001s00410 (11)	scaffold_1:310871-311055(+) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT4G12510.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46810.1	"LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106200.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2478.1.S1_at	A	A1TS	POPTR_0001s36780	POPTR_0001s36780 (11)	scaffold_1:35496174-35496720(+) (11)	NA	Q924N4	Solute carrier family 12 member 6	AT1G30450.2	cation-chloride co-transporter 1 	LOC_Os08g23440.1	"amino acid permease family protein, putative, expressed"	Medtr2g055760.1	Interleukin-6/G-CSF/MGF; Amino acid permease-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.248.1.A1_s_at	A	A1TS	POPTR_0004s05630	POPTR_0004s05630 (11)	scaffold_4:4394257-4394780(+) (11)	NA	Q54WA3	Peroxisomal targeting signal 2 receptor	AT1G29260.1	peroxin 7 	LOC_Os02g14790.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2480.1.S1_at	A	A1TS	POPTR_0006s04560	POPTR_0006s04560 (11)	scaffold_6:3109404-3110422(+) (11)	NA	Q8LAS8	S-formylglutathione hydrolase	AT2G41530.1	S-formylglutathione hydrolase 	LOC_Os01g71300.1	"S-formylglutathione hydrolase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2481.1.A1_s_at	A	A1TS	POPTR_0010s02450	POPTR_0010s02450 (11)	scaffold_10:2833549-2833961(-) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.2483.1.A1_at	A	A1TS	POPTR_0003s03720	POPTR_0003s03720 (11)	scaffold_3:4400109-4400905(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19410.1	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2483.1.A1_s_at	A	A1TS	POPTR_0003s03720	POPTR_0003s03720 (11)	scaffold_3:4400099-4400635(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19410.1	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2487.1.S1_s_at	A	A1TS	POPTR_0013s13090	POPTR_0013s13090 (11)	scaffold_13:13674582-13675128(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G59690.1	IQ-domain 13 	LOC_Os01g67090.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2488.1.S1_at	A	A1TS	POPTR_0001s10290	POPTR_0001s10290 (11)	scaffold_1:7979925-7979997(+) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2488.1.S1_x_at	A	A1TS	POPTR_0001s10290	POPTR_0001s10290 (11)	scaffold_1:7977089-7979997(+) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2489.1.A1_at	A	A1TS	POPTR_0003s20690	POPTR_0003s20690 (11)	scaffold_3:19162856-19163406(-) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.249.1.S1_at	A	A1TS	POPTR_0019s04230	POPTR_0019s04230 (11)	scaffold_19:4337083-4337705(+) (11)	NA	Q9M8Y0	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC	AT3G04240.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g68680.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2490.1.S1_at	A	A1TS	POPTR_0005s00810	POPTR_0005s00810 (9)	scaffold_5:370336-370953(-) (9)	NA	O80522	GDSL esterase/lipase At1g09390	AT1G09390.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g22780.2	"GDSL-like lipase/acylhydrolase, putative, expressed"	AC235094_3.1	"Lipolytic enzyme, G-D-S-L AC235094.1 17941-22012 E EGN_Mt090430 200"	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.2491.1.S1_at	A	A1TS	POPTR_0008s13620	POPTR_0008s13620 (9)	scaffold_8:8967460-8967682(+) (9)	NA	Q9S7U5	Heat stress transcription factor A-8	AT1G67970.1	heat shock transcription factor  A8 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g156700.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2492.1.S1_s_at	A	A1TS	POPTR_0007s09870	POPTR_0007s09870 (10)	scaffold_7:9392254-9392685(-) (10)	NA	Q9FJX6	Formin-like protein 6	AT5G67470.1	formin homolog 6 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr5g015760.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2493.1.A1_at	A	A1TS	POPTR_0015s01570	POPTR_0015s01570 (10)	scaffold_15:990814-991308(+) (10)	NA	Q8BVG4	Dipeptidyl peptidase 9	AT5G24260.1	prolyl oligopeptidase family protein 	LOC_Os02g18850.1	"OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr3g124020.2	"Peptidase S9, prolyl oligopeptidase active site region; Peptidase S9B, dipeptidylpeptidase IV N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	GO:0016020|membrane
Ptp.2494.1.S1_at	A	A1TS	POPTR_0003s06220	POPTR_0003s06220 (10)	scaffold_3:7698108-7698970(-) (10)	NA	P55039	Developmentally-regulated GTP-binding protein 2	AT1G72660.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g28940.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2495.1.S1_at	A	A1TS	POPTR_0016s14250	POPTR_0016s14250 (10)	scaffold_16:13503455-13503896(+) (10)	POPTR_0006s10840 (6)	NA	NA	AT1G29690.1	MAC/Perforin domain-containing protein 	LOC_Os01g54510.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr4g036780.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2497.1.S1_s_at	A	A2TS	POPTR_0017s02690	POPTR_0017s02690 (11)//POPTR_0293s00210 (10)	scaffold_17:1924777-1924988(-) (11)//scaffold_293:12491-12702(-) (10)	NA	Q9CXS4	Centromere protein V	AT5G16940.2	carbon-sulfur lyases 	LOC_Os09g23370.2	"proline-rich protein 6, putative, expressed"	Medtr3g087280.1	"Glutathione-dependent formaldehyde-activating, GFA "	GO:0008152|metabolic process	GO:0016846|carbon-sulfur lyase activity	NA
Ptp.2498.1.A1_s_at	A	A1TS	POPTR_0006s04570	POPTR_0006s04570 (11)	scaffold_6:3111270-3111555(-) (11)	NA	Q8RXS6	DNA helicase INO80 complex homolog 1	AT3G57300.1	INO80 ortholog 	LOC_Os03g22900.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.25.1.S1_at	A	A1TS	POPTR_0004s07040	POPTR_0004s07040 (11)	scaffold_4:5853202-5855019(-) (11)	NA	Q9FLX7	"Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial"	AT5G52840.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os03g19890.1	"NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed"	NA	NA	GO:0022904|respiratory electron transport chain	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH"""	GO:0005743|mitochondrial inner membrane
Ptp.2503.1.S1_at	A	A1TS	POPTR_0001s09330	POPTR_0001s09330 (11)	scaffold_1:7122642-7123179(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g149480.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2505.1.S1_s_at	A	A1TS	POPTR_0005s12770	POPTR_0005s12770 (11)	scaffold_5:9586084-9586456(+) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.2506.1.S1_at	A	A1TS	POPTR_0010s22750	POPTR_0010s22750 (11)	scaffold_10:19542482-19543567(-) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT2G37150.3	RING/U-box superfamily protein 	LOC_Os05g07070.8	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2507.1.A1_at	A	A1TS	POPTR_0017s02340	POPTR_0017s02340 (10)	scaffold_154:34895-35097(-) (9)//scaffold_17:1685928-1691638(-) (9)//scaffold_17:1717221-1717681(-) (10)	NA	Q43644	"NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial"	AT5G37510.1	"NADH-ubiquinone dehydrogenase, mitochondrial, putative "	LOC_Os03g50540.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr3g087270.1	Ferredoxin 	GO:0055114|oxidation reduction	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity"	NA
Ptp.2509.1.S1_at	A	A1TS	POPTR_0010s17060	POPTR_0010s17060 (11)	scaffold_10:15818514-15818806(+) (11)	NA	Q9C533	Probable S-acyltransferase At1g69420	AT1G69420.1	DHHC-type zinc finger family protein 	LOC_Os03g11110.1	"zinc finger family protein, putative, expressed"	Medtr5g045820.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.251.1.S1_at	A	A1TS	POPTR_0004s06460	POPTR_0004s06460 (11)	scaffold_4:5230281-5231595(+) (11)	NA	O23710	Proteasome subunit beta type-7-A	AT3G27430.2	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os05g09490.2	"peptidase, T1 family, putative, expressed"	Medtr7g032520.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.2510.2.S1_s_at	A	A1TS	POPTR_0008s01310	POPTR_0008s01310 (11)	scaffold_8:635742-635979(-) (11)	NA	Q66GR0	Fasciclin-like arabinogalactan protein 17	AT5G06390.1	FASCICLIN-like arabinogalactan protein 17 precursor 	LOC_Os03g57460.1	"fasciclin domain containing protein, expressed"	Medtr2g104610.1	Beta-Ig-H3/fasciclin; Myristoyl-CoA:protein N-myristoyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2511.1.S1_at	A	A1MS	POPTR_0011s09550	POPTR_0011s09550 (9)	scaffold_11:11874672-11874784(+) (9)	NA	Q8VYE2	Mitochondrial import inner membrane translocase subunit TIM50	AT1G55900.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g43770.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g103110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2512.1.S1_at	A	A1TS	POPTR_0002s03580	POPTR_0002s03580 (11)	scaffold_2:2220243-2220278(-) (11)	NA	P52577	Isoflavone reductase homolog P3	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.2512.1.S1_s_at	A	A1TS	POPTR_0002s03580	POPTR_0002s03580 (11)	scaffold_2:2219848-2220221(-) (11)	NA	P52577	Isoflavone reductase homolog P3	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.2512.1.S1_x_at	A	A1TS	POPTR_0002s03580	POPTR_0002s03580 (11)	scaffold_2:2219902-2220493(-) (11)	NA	P52577	Isoflavone reductase homolog P3	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.2514.1.S1_at	A	A1TS	POPTR_0003s19220	POPTR_0003s19220 (10)	scaffold_3:18012164-18012469(-) (10)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g124870.1	"Auxin-induced protein 5NG4, related "	NA	NA	GO:0016020|membrane
Ptp.2515.1.S1_at	A	A1TS	POPTR_0012s07560	POPTR_0012s07560 (10)	scaffold_12:8483787-8484009(-) (10)	NA	Q869R9	Myb-like protein J	AT1G19000.2	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2518.1.S1_at	A	A1TS	POPTR_0018s09730	POPTR_0018s09730 (11)	scaffold_18:10756337-10756625(-) (11)	NA	P17784	Fructose-bisphosphate aldolase cytoplasmic isozyme	AT2G36460.1	Aldolase superfamily protein 	LOC_Os05g33380.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g077730.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.2518.1.S1_x_at	A	A1TS	POPTR_0018s09730	POPTR_0018s09730 (11)	scaffold_18:10756279-10756625(-) (11)	NA	P17784	Fructose-bisphosphate aldolase cytoplasmic isozyme	AT2G36460.1	Aldolase superfamily protein 	LOC_Os05g33380.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g077730.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.252.1.A1_at	A	A1MA	POPTR_0010s09560	POPTR_0010s09560 (11)	scaffold_10:10316349-10316567(+) (11)	NA	Q5ZLM0	Parafibromin	AT3G22590.1	PLANT HOMOLOGOUS TO PARAFIBROMIN 	LOC_Os03g46190.2	"parafibromin, putative, expressed"	Medtr5g007100.1	"RNA pol II accessory factor, Cdc73 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2520.2.S1_s_at	A	A2TS	POPTR_0006s24780	POPTR_0006s24780 (11)//POPTR_0018s05010 (11)	scaffold_18:4432705-4432740(-) (11)//scaffold_6:23336135-23336170(+) (11)	NA	NA	NA	AT2G25970.1	KH domain-containing protein 	LOC_Os02g13130.1	"KH domain-containing protein, putative, expressed"	Medtr1g020830.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.2523.1.S1_at	A	A1TS	POPTR_0018s12410	POPTR_0018s12410 (9)	scaffold_18:12898250-12898282(+) (9)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr8g122340.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2523.1.S1_s_at	A	A1TS	POPTR_0018s12410	POPTR_0018s12410 (11)	scaffold_18:12897867-12898190(+) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr8g122340.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2524.1.S1_at	A	A1TS	POPTR_0008s13450	POPTR_0008s13450 (9)	scaffold_8:8857753-8858092(+) (9)	NA	NA	NA	AT1G68060.1	microtubule-associated proteins 70-1 	LOC_Os02g50320.1	"ATMAP70 protein, putative, expressed"	Medtr4g157060.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2525.1.S1_at	A	A1TS	POPTR_0001s31470	POPTR_0001s31470 (11)	scaffold_1:29762454-29763100(+) (11)	NA	P42734	Probable cinnamyl alcohol dehydrogenase 9	AT4G39330.1	cinnamyl alcohol dehydrogenase 9 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr4g141720.1	"Alcohol dehydrogenase, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2526.1.A1_at	A	A1TS	POPTR_0005s18960	POPTR_0005s18960 (11)	scaffold_5:17458603-17459332(+) (11)	NA	P28523	Casein kinase II subunit alpha	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2528.1.S1_s_at	A	A1TS	POPTR_0008s20300	POPTR_0008s20300 (11)	scaffold_8:14053434-14053921(-) (11)	NA	Q9ZS91	Peptide methionine sulfoxide reductase B5	AT4G04830.1	methionine sulfoxide reductase B5 	LOC_Os03g24600.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr2g026010.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
Ptp.253.1.S1_at	A	A1TS	POPTR_0002s05080	POPTR_0002s05080 (11)	scaffold_2:3289250-3289541(+) (11)	NA	Q54W07	Probable serine/threonine-protein kinase BUD32 homolog	AT5G26110.1	Protein kinase superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2530.1.S1_s_at	A	A1TS	POPTR_0003s02410	POPTR_0003s02410 (11)	scaffold_3:2500191-2500998(+) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.1	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2530.2.S1_s_at	A	A1TS	POPTR_0003s02400	POPTR_0003s02400 (11)	scaffold_3:2491801-2492065(+) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2532.1.S1_x_at	A	A1TS	POPTR_0014s07250	POPTR_0014s07250 (11)	scaffold_14:5478072-5478570(-) (11)	NA	O80845	Peroxisomal membrane protein 11D	AT2G45740.3	peroxin 11D 	LOC_Os06g03660.2	"peroxisomal biogenesis factor 11, putative, expressed"	Medtr7g083810.1	Peroxisomal biogenesis factor 11 	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
Ptp.2533.1.S1_at	A	A1TS	POPTR_0018s03690	POPTR_0018s03690 (11)	scaffold_18:3143034-3144896(+) (11)	NA	Q8LAZ7	COP9 signalosome complex subunit 5b	AT1G22920.1	COP9 signalosome 5A 	LOC_Os04g56070.1	"COP9 signalosome complex subunit 5b, putative, expressed"	Medtr3g133410.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2536.1.A1_at	A	A1TS	POPTR_0009s16500	POPTR_0009s16500 (11)	scaffold_9:12515821-12517878(-) (11)	NA	Q5R4W3	DNA polymerase epsilon subunit 3	AT2G27470.1	"nuclear factor Y, subunit B11 "	LOC_Os09g39490.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr4g140740.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2537.1.S1_at	A	A1TS	POPTR_0017s00360	POPTR_0017s00360 (9)	scaffold_17:110146-112674(+) (9)	NA	O80575	"6,7-dimethyl-8-ribityllumazine synthase, chloroplastic"	AT2G44050.1	"6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase "	LOC_Os04g42000.1	"6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	NA	GO:0009349|riboflavin synthase complex
Ptp.2538.1.S1_at	A	A1TS	POPTR_0006s12500	POPTR_0006s12500 (11)	scaffold_6:9657000-9657925(+) (11)	NA	Q7XSQ7	Thioredoxin-like 3-3	AT3G53220.1	Thioredoxin superfamily protein 	LOC_Os05g40190.1	"thioredoxin, putative, expressed"	Medtr8g005420.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2540.1.S1_s_at	A	A1TS	POPTR_0007s08390	POPTR_0007s08390 (11)	scaffold_7:7159698-7159858(+) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os02g32030.1	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2542.1.S1_at	A	A1TS	POPTR_0001s26150	POPTR_0001s26150 (11)	scaffold_1:25234502-25234944(+) (11)	NA	Q8L7T3	Ubiquitin-conjugating enzyme E2 20	AT1G50490.1	ubiquitin-conjugating enzyme 20 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g103970.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2545.1.S1_at	A	A1TS	POPTR_0013s13220	POPTR_0013s13220 (11)	scaffold_13:13780820-13780993(+) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2545.1.S1_x_at	A	A1TS	POPTR_0013s13220	POPTR_0013s13220 (11)	scaffold_13:13780820-13780993(+) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2547.1.S1_s_at	A	A2TS	POPTR_0004s16450	POPTR_0009s12150 (9)//POPTR_0004s16450 (9)	scaffold_4:16910224-16910261(-) (9)//scaffold_9:9959297-9959334(-) (9)	NA	P46301	40S ribosomal protein S25	AT4G39200.1	Ribosomal protein S25 family protein 	LOC_Os08g44480.1	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2548.1.S1_s_at	A	A1TS	POPTR_0004s08540	POPTR_0004s08540 (11)	scaffold_4:7111843-7112176(-) (11)	NA	Q9JJW6	RNA and export factor-binding protein 2	AT5G37720.2	ALWAYS EARLY 4 	LOC_Os08g33120.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g087650.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.2549.1.S1_at	A	A1TS	POPTR_0009s02450	POPTR_0009s02450 (11)	scaffold_9:3220867-3221600(+) (11)	NA	P19950	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os02g06700.2	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2550.1.S1_at	A	A1TS	POPTR_0002s04790	POPTR_0002s04790 (11)	scaffold_2:3024300-3024595(+) (11)	NA	P23525	"37 kDa inner envelope membrane protein, chloroplastic"	AT3G63410.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g08200.1	"methyltransferase domain containing protein, putative, expressed"	Medtr1g083540.1	"37 kDa inner envelope membrane protein, chloroplast precursor, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.2551.1.S1_at	A	A1TS	POPTR_0010s20010	POPTR_0010s20010 (10)	scaffold_10:17758698-17759219(+) (11)	NA	P58684	Probable signal peptidase complex subunit 2	AT2G39960.1	Microsomal signal peptidase 25 kDa subunit (SPC25) 	LOC_Os04g36859.1	"signal peptidase complex subunit 2, putative, expressed"	Medtr5g089240.1	Microsomal signal peptidase 25 kDa subunit 	GO:0044260|cellular macromolecule metabolic process||GO:0006508|proteolysis||GO:0006465|signal peptide processing	GO:0008233|peptidase activity	GO:0005787|signal peptidase complex||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
Ptp.2552.1.S1_s_at	A	A1TS	POPTR_0012s07060	POPTR_0012s07060 (11)	scaffold_12:7741885-7742375(+) (11)	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g51080.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2555.1.A1_at	A	A1TS	POPTR_0001s12900	POPTR_0001s12900 (11)	scaffold_1:10011746-10011931(+) (11)	NA	NA	NA	AT5G64680.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g15520.1	expressed protein	Medtr8g012770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2556.1.S1_s_at	A	A1TS	POPTR_0017s05860	POPTR_0017s05860 (11)	scaffold_17:4548925-4549265(-) (11)	NA	O22845	Calmodulin-like protein 5	AT2G43290.1	Calcium-binding EF-hand family protein 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr2g118470.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2557.1.S1_at	A	A1TS	POPTR_0016s05320	POPTR_0016s05320 (11)	scaffold_16:3279072-3279889(+) (11)	NA	Q54D08	Protein LST8 homolog	AT3G18140.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g47780.1	"WD repeat-containing protein, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2558.1.S1_at	A	A1TS	POPTR_0008s00560	POPTR_0008s00560 (11)	scaffold_8:236636-237530(+) (11)	NA	Q9SM09	V-type proton ATPase catalytic subunit A	AT1G78900.2	vacuolar ATP synthase subunit A 	LOC_Os06g45120.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.256.1.S1_s_at	A	A1TS	POPTR_0014s09340	POPTR_0014s09340 (11)	scaffold_14:6945244-6947716(+) (11)	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2560.1.S1_s_at	A	A1TS	POPTR_0013s06360	POPTR_0013s06360 (11)	scaffold_13:4913161-4913935(+) (11)	NA	Q4PGW7	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr7g103920.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2560.3.S1_s_at	A	A1TS	POPTR_0013s06360	POPTR_0013s06360 (11)	scaffold_13:4914153-4914227(+) (11)	NA	Q4PGW7	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr7g103920.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2561.1.A1_s_at	A	A1TS	POPTR_0005s24120	POPTR_0005s24120 (11)	scaffold_5:22755608-22755647(-) (11)	NA	P31674	40S ribosomal protein S15	AT5G09500.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2562.1.S1_s_at	A	A1TS	POPTR_0006s23070	POPTR_0006s23070 (11)	scaffold_6:21897153-21899174(+) (11)	NA	Q9M5L0	60S ribosomal protein L35	AT5G02610.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2563.2.S1_at	A	A1MS	POPTR_0006s26610	POPTR_0006s26610 (10)	scaffold_6:24777682-24777916(+) (10)	NA	P48502	Cytochrome b-c1 complex subunit 7	AT5G25450.1	"Cytochrome bd ubiquinol oxidase, 14kDa subunit "	LOC_Os03g59220.1	"cytochrome b-c1 complex subunit 7, putative, expressed"	Medtr1g013430.1	"Cytochrome bd ubiquinol oxidase, 14 kDa subunit "	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
Ptp.2565.1.A1_at	A	A1TS	POPTR_0006s07780	POPTR_0006s07780 (11)	scaffold_6:5698273-5699626(+) (11)	NA	B9HBA8	"Biotin carboxylase 1, chloroplastic"	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
Ptp.2566.1.S1_at	A	A1TS	POPTR_0015s04250	POPTR_0015s04250 (11)	scaffold_15:4309370-4310447(+) (11)	NA	O24076	Guanine nucleotide-binding protein subunit beta-like protein	AT1G48630.1	receptor for activated C kinase 1B 	LOC_Os01g49290.1	"WD repeat-containing protein, putative, expressed"	Medtr4g155480.1	"Guanine nucleotide-binding protein subunit beta-like protein, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2567.1.S1_a_at	A	A1TS	POPTR_0004s21380	POPTR_0004s21380 (11)	scaffold_4:20538517-20539051(-) (11)	NA	NA	NA	AT5G22460.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g05600.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2567.1.S1_s_at	A	A1TS	POPTR_0004s21380	POPTR_0004s21380 (11)	scaffold_4:20538543-20539093(-) (11)	NA	NA	NA	AT5G22460.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g05600.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2568.1.S1_s_at	A	A1TS	POPTR_0002s14740	POPTR_0002s14740 (11)	scaffold_2:10946874-10947221(+) (11)	NA	P05466	"3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic"	AT2G45300.1	"RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta "	LOC_Os06g04280.1	"3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed"	Medtr4g025530.1	3-phosphoshikimate 1-carboxyvinyltransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
Ptp.257.1.S1_s_at	A	A1TS	POPTR_0001s25780	POPTR_0001s25780 (11)	scaffold_1:24808713-24808999(-) (11)	NA	Q84T03	DEAD-box ATP-dependent RNA helicase 27	AT3G18600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g58810.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g115790.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.2570.1.S1_at	A	A1TS	POPTR_0008s15290	POPTR_0008s15290 (11)	scaffold_8:10204043-10204389(+) (11)	NA	Q9FDW0	Protein FRIGIDA	AT3G22440.1	FRIGIDA-like protein 	LOC_Os07g07680.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2572.1.S1_at	A	A1TS	POPTR_0017s13180	POPTR_0017s13180 (11)	scaffold_17:13359286-13359615(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2573.1.S1_at	A	A1TS	POPTR_0015s05010	POPTR_0015s05010 (11)	scaffold_15:5247638-5248176(-) (11)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2574.1.S1_at	A	A1TS	POPTR_0009s06180	POPTR_0009s06180 (11)	scaffold_9:6038904-6039423(-) (11)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os04g28180.1	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	GO:0005622|intracellular
Ptp.2577.1.S1_s_at	A	A1TS	POPTR_0003s11340	POPTR_0003s11340 (11)	scaffold_3:12177633-12179276(+) (11)	NA	NA	NA	AT1G62790.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g47200.2	"LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106370.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2578.1.S1_s_at	A	A1TS	POPTR_0002s10580	POPTR_0002s10580 (11)	scaffold_2:7673367-7673936(+) (11)	NA	Q9FUY6	MADS-box protein JOINTLESS	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os02g52340.1	"OsMADS22 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2581.1.S1_at	A	A1TS	POPTR_0008s06720	POPTR_0008s06720 (11)	scaffold_8:4016301-4017947(-) (11)	NA	Q9S7W1	"Chlorophyll a-b binding protein CP29.3, chloroplastic"	AT2G40100.1	light harvesting complex photosystem II 	LOC_Os07g37240.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr3g093420.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2582.1.S1_s_at	A	A1TS	POPTR_0005s19160	POPTR_0005s19160 (11)	scaffold_5:17772923-17773272(+) (11)	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G38100.1	unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g11400.1	expressed protein	Medtr5g033900.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2583.1.S1_at	A	A1TS	POPTR_0007s02460	POPTR_0007s02460 (11)	scaffold_7:1457911-1457951(-) (11)	NA	Q8H159	Polyubiquitin 10	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.5	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2585.1.S1_at	A	A1TS	POPTR_0016s03230	POPTR_0016s03230 (11)	scaffold_16:1652494-1653167(+) (11)	NA	Q15032	R3H domain-containing protein 1	AT3G56680.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr7g105960.1	Single-stranded nucleic acid binding R3H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2586.1.S1_s_at	A	A1TS	POPTR_0006s24570	POPTR_0006s24570 (11)	scaffold_6:23165723-23166379(+) (11)	NA	O49954	"Glycine dehydrogenase [decarboxylating], mitochondrial"	AT4G33010.1	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2588.1.S1_s_at	A	A1TS	POPTR_0001s16400	POPTR_0001s16400 (11)	scaffold_1:13187817-13187862(+) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.2	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.2588.2.S1_at	A	A1MS	POPTR_0001s16400	POPTR_0001s16400 (11)	scaffold_1:13186061-13186220(+) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.2	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.259.1.S1_s_at	A	A1TS	POPTR_0003s07880	POPTR_0003s07880 (11)	scaffold_3:9391014-9392121(-) (11)	NA	Q8YXQ7	Carbamoyl-phosphate synthase small chain	AT3G27740.1	carbamoyl phosphate synthetase A 	LOC_Os02g47850.2	"class I glutamine amidotransferase, putative, expressed"	Medtr8g109600.1	"Carbamoyl-phosphate synthase, small subunit; Glutamine amidotransferase, class I, active site "	GO:0006807|nitrogen compound metabolic process	GO:0004086|carbamoyl-phosphate synthase activity	NA
Ptp.2590.1.A1_at	A	A1TS	POPTR_0006s10320	POPTR_0006s10320 (11)	scaffold_6:7734596-7734648(+) (11)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.2591.1.S1_at	A	A1TS	POPTR_0004s14780	POPTR_0004s14780 (11)	scaffold_4:15417259-15417730(-) (11)	NA	Q06GK0	"30S ribosomal protein S7, chloroplastic"	ATCG00900.1	Ribosomal protein S7p/S5e family protein 	LOC_Os10g21372.1	"chloroplast 30S ribosomal protein S7, putative"	Medtr3g043700.1	Ribosomal protein S7 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2592.2.S1_x_at	A	A1TS	POPTR_0005s25420	POPTR_0005s25420 (11)	scaffold_5:23693293-23694270(-) (11)	NA	Q07090	Thioredoxin H-type 2	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr1g028610.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2592.3.S1_x_at	A	A1TS	POPTR_0005s25420	POPTR_0005s25420 (11)	scaffold_5:23693265-23694262(-) (11)	NA	Q07090	Thioredoxin H-type 2	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr1g028610.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2593.1.S1_s_at	A	A1TS	POPTR_0001s10060	POPTR_0001s10060 (11)	scaffold_1:7787113-7787620(-) (11)	NA	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
Ptp.2594.1.S1_at	A	A1TS	POPTR_0012s09510	POPTR_0012s09510 (11)	scaffold_12:10512566-10512793(+) (11)	NA	Q93Y35	Probable 26S proteasome non-ATPase regulatory subunit 6	AT4G24820.2	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os04g40850.1	"26S proteasome non-ATPase regulatory subunit 6, putative, expressed"	Medtr8g109840.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2595.1.S1_s_at	A	A1TS	POPTR_0003s01090	POPTR_0003s01090 (11)	scaffold_3:955536-955906(-) (11)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.2596.1.S1_at	A	A1TS	POPTR_0006s26270	POPTR_0006s26270 (11)	scaffold_6:24522472-24524070(-) (11)	NA	P82715	"PsbP domain-containing protein 5, chloroplastic"	AT5G11450.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os01g43070.1	"psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed"	Medtr3g136110.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2597.1.S1_at	A	A1TS	POPTR_0002s09880	POPTR_0002s09880 (11)	scaffold_2:7095943-7096414(+) (11)	NA	NA	NA	AT4G08950.1	Phosphate-responsive 1 family protein 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g144900.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2598.1.S1_at	A	A1TS	POPTR_0015s04280	POPTR_0015s04280 (11)	scaffold_15:4333505-4334114(-) (11)	NA	Q9LV33	Beta-glucosidase 44	AT3G18080.1	B-S glucosidase 44 	LOC_Os01g32364.1	"Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2599.1.S1_at	A	A1TS	POPTR_0002s02340	POPTR_0002s02340 (11)	scaffold_2:1324748-1324814(+) (11)	NA	P18025	Tubulin beta-1 chain	AT1G20010.1	tubulin beta-5 chain 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2599.1.S1_s_at	A	A1TS	POPTR_0002s02340	POPTR_0002s02340 (11)	scaffold_2:1324888-1325308(+) (11)	NA	P18025	Tubulin beta-1 chain	AT1G20010.1	tubulin beta-5 chain 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.260.1.S1_at	A	A1TS	POPTR_0010s10480	POPTR_0010s10480 (10)	scaffold_10:10974629-10974687(-) (10)	NA	P49756	RNA-binding protein 25	AT1G60200.1	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 	LOC_Os08g32100.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr5g035770.1	"Splicing factor PWI; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	GO:0003676|nucleic acid binding	NA
Ptp.2600.1.S1_s_at	A	A1TS	POPTR_0011s13490	POPTR_0011s13490 (11)	scaffold_11:16238447-16238564(+) (11)	NA	Q9C681	Probable histone H2A.1	AT1G51060.1	histone H2A 10 	LOC_Os08g33100.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr2g096630.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2601.1.S1_a_at	A	A1TS	POPTR_0009s12110	POPTR_0009s12110 (11)	scaffold_9:9932377-9932712(-) (11)	NA	O48671	Protein RER1B	AT2G21600.1	endoplasmatic reticulum retrieval protein 1B 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
Ptp.2602.1.S1_x_at	A	A1TS	POPTR_0001s40300	POPTR_0001s40300 (11)	scaffold_1:39656826-39658733(+) (11)	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2604.1.S1_x_at	A	A1TS	POPTR_0008s05480	POPTR_0008s05480 (11)	scaffold_8:3171328-3171686(-) (11)	NA	P27322	Heat shock cognate 70 kDa protein 2	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2605.1.A1_at	A	A1TS	POPTR_0001s14280	POPTR_0001s14280 (11)	scaffold_1:11233898-11236024(+) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os02g57260.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2608.1.S1_s_at	A	A1TS	POPTR_0006s07720	POPTR_0006s07720 (11)	scaffold_6:5627975-5628388(+) (11)	NA	Q9ASY8	Mitochondrial import receptor subunit TOM7-1	AT5G41685.1	"Mitochondrial outer membrane translocase complex, subunit Tom7 "	LOC_Os05g50654.1	"mitochondrial import receptor subunit TOM7-1, putative, expressed"	Medtr3g076590.1	TOM7 	GO:0006886|intracellular protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0005741|mitochondrial outer membrane
Ptp.2609.1.S1_s_at	A	A1TS	POPTR_0006s23870	POPTR_0006s23870 (11)	scaffold_6:22596460-22596753(+) (11)	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2609.2.S1_at	A	A1TS	POPTR_0018s08510	POPTR_0018s08510 (11)	scaffold_18:9466407-9466480(-) (11)	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2609.2.S1_x_at	A	A1TS	POPTR_0018s08510	POPTR_0018s08510 (11)	scaffold_18:9466407-9466534(-) (11)	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.261.1.S1_s_at	A	A1TS	POPTR_0001s37150	POPTR_0001s37150 (11)	scaffold_1:35980652-35981084(-) (11)	NA	Q9LDH0	"Beta-(1,2)-xylosyltransferase"	AT5G55500.1	"beta-1,2-xylosyltransferase "	LOC_Os08g39380.1	"beta 1,2-xylosyltransferase, putative, expressed"	Medtr3g076770.1	"beta 1,2 xylosyltransferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2610.3.A1_a_at	A	A1TS	POPTR_0005s20830	POPTR_0005s20830 (11)	scaffold_5:19971770-19972119(-) (11)	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2610.3.A1_s_at	A	A1TS	POPTR_0005s20830	POPTR_0005s20830 (11)	scaffold_5:19969431-19969476(-) (11)	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2611.2.A1_a_at	A	A1TS	POPTR_0010s08670	POPTR_0010s08670 (11)	scaffold_10:9563486-9564129(+) (11)	NA	NA	NA	AT3G23090.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2613.1.A1_x_at	A	A1TS	POPTR_0018s06650	POPTR_0018s06650 (11)	scaffold_18:6696249-6698029(+) (11)	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr6g093440.1	Ribosomal protein L31e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2615.1.S1_s_at	A	A1TS	POPTR_0005s07770	POPTR_0005s07770 (11)	scaffold_5:5314033-5314640(-) (11)	NA	Q94FB9	ABC transporter D family member 1	AT4G39850.1	peroxisomal ABC transporter 1 	LOC_Os01g73530.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g101500.1	Peroxysomal long chain fatty acyl transporter 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.2617.1.S1_at	A	A1TS	POPTR_0003s20310	POPTR_0003s20310 (10)	scaffold_3:18817568-18818053(-) (10)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr4g118330.1	RNA-binding region RNP-1 (RNA recognition motif); U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2618.1.S1_at	A	A1TS	POPTR_0006s04330	POPTR_0006s04330 (10)	scaffold_6:2949842-2950166(-) (10)	NA	P54453	Uncharacterized protein yqeH	AT3G57180.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g30380.1	"GTP binding protein, putative, expressed"	Medtr7g107700.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.262.1.S1_a_at	A	A2TS	POPTR_0001s02600	POPTR_0003s08950 (11)//POPTR_0001s02600 (11)	scaffold_1:2059422-2059473(-) (11)//scaffold_3:10241109-10241160(+) (11)	NA	NA	NA	AT4G17950.1	AT hook motif DNA-binding family protein 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr8g102740.1	Protein of unknown function DUF296 	NA	GO:0003677|DNA binding	NA
Ptp.262.1.S1_at	A	A1TS	POPTR_0003s08950	POPTR_0003s08950 (10)	scaffold_3:10244677-10245264(+) (10)	NA	NA	NA	AT4G17950.1	AT hook motif DNA-binding family protein 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr8g102740.1	Protein of unknown function DUF296 	NA	GO:0003677|DNA binding	NA
Ptp.2620.1.S1_at	A	A1TS	POPTR_0007s01830	POPTR_0007s01830 (11)	scaffold_7:1052348-1052713(-) (11)	NA	Q6GN58	Protein YIF1B-A	AT1G30890.2	Integral membrane HRF1 family protein 	LOC_Os04g08320.1	"YIF1B, putative, expressed"	Medtr7g020670.1	Hrf1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2621.1.A1_s_at	A	A1TS	POPTR_0008s19020	POPTR_0008s19020 (11)	scaffold_8:13006439-13006896(-) (11)	NA	NA	NA	AT1G67910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). 	NA	NA	Medtr8g081780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2622.1.S1_at	A	A1TS	POPTR_0006s10490	POPTR_0006s10490 (11)	scaffold_6:7829803-7830163(-) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT3G08890.2	"Protein of unknown function, DUF538 "	LOC_Os05g27950.1	"DUF538 domain containing protein, putative, expressed"	Medtr7g076080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2623.1.S1_a_at	A	A1MS	POPTR_0011s17150	POPTR_0011s17150 (11)	scaffold_11:18750715-18750782(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT5G56170.1	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 	LOC_Os02g48980.1	"GPI-anchored protein, putative, expressed"	Medtr3g016820.1	"GPI-anchored protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2623.2.S1_a_at	A	A1MS	POPTR_0011s17150	POPTR_0011s17150 (11)	scaffold_11:18750716-18750894(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT5G56170.1	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 	LOC_Os02g48980.1	"GPI-anchored protein, putative, expressed"	Medtr3g016820.1	"GPI-anchored protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2627.1.A1_s_at	A	A1TS	POPTR_0013s12970	POPTR_0013s12970 (11)	scaffold_13:13567517-13567746(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2627.1.A1_x_at	A	A1TS	POPTR_0013s12970	POPTR_0013s12970 (11)	scaffold_13:13567614-13567906(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2628.1.A1_at	A	A1TS	POPTR_0001s36160	POPTR_0001s36160 (11)	scaffold_1:34671782-34672811(+) (11)	NA	Q9FJI5	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
Ptp.2628.1.A1_x_at	A	A1TS	POPTR_0001s36160	POPTR_0001s36160 (11)	scaffold_1:34671439-34672811(+) (11)	NA	Q9FJI5	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
Ptp.2629.1.S1_s_at	A	A1TS	POPTR_0005s23310	POPTR_0005s23310 (11)	scaffold_5:22129149-22129822(-) (11)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.263.2.A1_at	A	A1TS	POPTR_0015s12490	POPTR_0015s12490 (11)	scaffold_15:12718538-12719058(-) (11)	NA	Q6PGS5	Transmembrane protein 56-B	AT1G31300.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os03g46410.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
Ptp.2630.1.S1_s_at	A	A1TS	POPTR_0006s06770	POPTR_0006s06770 (11)	scaffold_6:4902171-4902813(-) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.2631.1.S1_at	A	A1TS	POPTR_0012s13230	POPTR_0012s13230 (10)	scaffold_12:13477965-13478824(+) (10)	NA	P93788	Remorin	AT5G23750.2	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2633.1.S1_at	A	A1TS	POPTR_0004s01320	POPTR_0004s01320 (11)	scaffold_4:713253-715307(-) (11)	NA	Q39366	Putative lactoylglutathione lyase	AT1G11840.6	glyoxalase I homolog 	LOC_Os08g09250.2	"glyoxalase family protein, putative, expressed"	Medtr8g146950.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2635.1.S1_s_at	A	A1TS	POPTR_0002s26100	POPTR_0002s26100 (11)	scaffold_2:23068254-23069360(-) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT4G28600.1	no pollen germination related 2 	LOC_Os10g33290.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g090090.2	"NPGR2 ; calmodulin binding ta, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2636.1.S1_at	A	A1TS	POPTR_0013s09090	POPTR_0013s09090 (10)	scaffold_13:8647682-8648234(+) (10)	NA	Q84WF5	Probable VAMP-like protein At1g33475	AT4G10170.2	SNARE-like superfamily protein 	LOC_Os08g01880.1	"synaptobrevin-related family protein, putative, expressed"	Medtr3g016650.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2637.1.S1_at	A	A1TS	POPTR_0006s24770	POPTR_0006s24770 (9)	scaffold_6:23325006-23326946(+) (11)	NA	P42027	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial"	AT5G11770.1	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial "	LOC_Os01g52214.1	"ubiquinone oxidoreductase, putative, expressed"	Medtr3g140060.1	"NADH dehydrogenase (ubiquinone), 20 kDa subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2637.1.S1_s_at	A	A1TS	POPTR_0006s24770	POPTR_0006s24770 (11)	scaffold_6:23326821-23327319(+) (11)	NA	P42027	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial"	AT5G11770.1	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial "	LOC_Os01g52214.1	"ubiquinone oxidoreductase, putative, expressed"	Medtr3g140060.1	"NADH dehydrogenase (ubiquinone), 20 kDa subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2638.1.A1_at	A	A1TS	POPTR_0013s14170	POPTR_0013s14170 (11)	scaffold_13:14466058-14466325(-) (11)	NA	Q8GZA8	Protein ULTRAPETALA 1	AT4G28190.1	"Developmental regulator, ULTRAPETALA "	LOC_Os01g57240.1	expressed protein	AC229695_17.1	"Protein ULTRAPETALA 2, putative AC229695.5 69003-71368 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2639.1.S1_at	A	A1TS	POPTR_0006s05090	POPTR_0006s05090 (11)	scaffold_6:3533574-3534971(-) (11)	NA	Q9SCM3	40S ribosomal protein S2-4	AT3G57490.1	Ribosomal protein S5 family protein 	LOC_Os03g59310.1	"ribosomal protein, putative, expressed"	Medtr4g157070.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2640.1.A1_at	A	A1TS	POPTR_0017s14060	POPTR_0017s14060 (11)	scaffold_17:14214488-14215037(-) (11)	NA	Q6DD45	Zinc finger CCHC domain-containing protein 8	AT5G38600.1	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein 	LOC_Os06g30020.1	"PSP domain containing protein, expressed"	AC233657_33.1	"Zinc finger, CCHC-type; PSP, proline-rich AC233657.1 169292-178036 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2641.1.S1_s_at	A	A1TS	POPTR_0006s14340	POPTR_0006s14340 (11)	scaffold_6:11664711-11665110(-) (11)	NA	O65351	Subtilisin-like protease	AT2G05920.1	Subtilase family protein 	LOC_Os09g26920.1	"OsSub57 - Putative Subtilisin homologue, expressed"	Medtr2g049250.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.2643.1.S1_s_at	A	A1TS	POPTR_0003s20840	POPTR_0003s20840 (11)	scaffold_3:19233149-19233344(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g06240.2	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2644.1.S1_s_at	A	A1TS	POPTR_0003s04200	POPTR_0003s04200 (11)	scaffold_3:4918991-4920051(-) (11)	NA	Q84LG4	Coatomer subunit zeta-2	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.2645.1.S1_s_at	A	A1TS	POPTR_0014s09190	POPTR_0014s09190 (10)	scaffold_14:6825841-6826294(-) (10)	NA	Q9SUP6	Probable WRKY transcription factor 53	AT4G23810.1	WRKY family transcription factor 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.2646.1.S1_x_at	A	A1TS	POPTR_0011s17170	POPTR_0011s17170 (11)	scaffold_11:18759120-18759666(+) (11)	NA	Q9S7N7	"Photosystem I reaction center subunit V, chloroplastic"	AT1G55670.1	photosystem I subunit G 	LOC_Os09g30340.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	Medtr3g016960.1	Photosystem I psaG/psaK protein 	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
Ptp.2647.2.S1_a_at	A	A1TS	POPTR_0014s08780	POPTR_0014s08780 (11)	scaffold_14:6507442-6507842(+) (11)	NA	NA	NA	AT2G46220.1	Uncharacterized conserved protein (DUF2358) 	LOC_Os01g12200.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2648.1.S1_s_at	A	A1TS	POPTR_0004s17400	POPTR_0004s17400 (11)	scaffold_4:17608366-17608971(-) (11)	NA	Q0WLC6	"Pentatricopeptide repeat-containing protein At4g34830, chloroplastic"	AT4G34830.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g10170.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g098380.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.265.1.S1_s_at	A	A1TS	POPTR_0014s03510	POPTR_0014s03510 (11)	scaffold_14:2815126-2815610(-) (11)	NA	Q8GZD4	Nucleobase-ascorbate transporter 3	AT2G26510.1	Xanthine/uracil permease family protein 	LOC_Os12g39420.9	"nucleobase-ascorbate transporter, putative, expressed"	Medtr1g025100.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2651.1.A1_at	A	A1TS	POPTR_0007s06500	POPTR_0007s06500 (11)	scaffold_7:4864108-4864903(-) (11)	NA	NA	NA	AT5G10010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). 	LOC_Os04g56590.1	"ATP/GTP binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2651.2.A1_at	A	A1TS	POPTR_0007s06500	POPTR_0007s06500 (10)	scaffold_7:4863203-4863622(-) (11)	NA	NA	NA	AT5G10010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). 	LOC_Os04g56590.1	"ATP/GTP binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2653.1.S1_a_at	A	A1MS	POPTR_0003s19140	POPTR_0003s19140 (11)	scaffold_3:17936179-17936418(-) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.2653.3.S1_s_at	A	A1TS	POPTR_0003s19140	POPTR_0003s19140 (11)	scaffold_3:17934525-17936440(-) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.2654.1.S1_s_at	A	A1TS	POPTR_0017s12240	POPTR_0017s12240 (11)	scaffold_17:12475200-12476206(+) (11)	NA	P55217	"Cystathionine gamma-synthase, chloroplastic"	AT3G01120.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g25940.4	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
Ptp.2655.1.S1_at	A	A1TS	POPTR_0001s47670	POPTR_0001s47670 (9)	scaffold_1:47815102-47815467(-) (9)	NA	Q9FG77	Probable WRKY transcription factor 2	AT5G56270.1	WRKY DNA-binding protein 2 	LOC_Os08g38990.4	"OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.2656.1.S1_at	A	A1TS	POPTR_0001s28710	POPTR_0001s28710 (11)	scaffold_1:27484344-27484793(-) (11)	NA	C0LGU7	Probable LRR receptor-like serine/threonine-protein kinase At5g45840	AT5G45840.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr3g094640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2657.1.S1_s_at	A	A1TS	POPTR_0006s14680	POPTR_0006s14680 (11)	scaffold_6:12053262-12054258(+) (11)	NA	P48980	Beta-galactosidase	AT3G13750.1	beta galactosidase 1 	LOC_Os01g39830.1	"beta-galactosidase, putative, expressed"	Medtr2g121320.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2659.1.A1_s_at	A	A1TS	POPTR_0016s07600	POPTR_0016s07600 (11)	scaffold_16:5464002-5464299(-) (11)	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os11g05650.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2660.1.A1_at	A	A1TS	POPTR_0005s09610	POPTR_0005s09610 (11)	scaffold_5:6728079-6728733(+) (11)	NA	P14656	Glutamine synthetase cytosolic isozyme 1-1	AT1G66200.1	glutamine synthase clone F11 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2661.1.S1_at	A	A1TS	POPTR_0012s00440	POPTR_0012s00440 (9)	scaffold_12:147920-148297(-) (9)	NA	NA	NA	AT3G49550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24610.1); Has 55 Blast hits to 55 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g36550.3	"CRP3 - Cysteine-rich family protein precursor, expressed"	Medtr5g077350.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2662.1.S1_s_at	A	A1TS	POPTR_0002s19480	POPTR_0002s19480 (11)	scaffold_2:15455024-15455982(-) (11)	NA	Q6GQT9	Nodal modulator 1	AT3G62360.1	Carbohydrate-binding-like fold 	LOC_Os01g19470.1	"nodal modulator 1 precursor, putative, expressed"	Medtr7g133160.1	Carboxypeptidase regulatory region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2664.1.A1_at	A	A1TS	POPTR_0001s29510	POPTR_0001s29510 (11)	scaffold_1:28168119-28168364(+) (11)	NA	Q9M2Y6	Uncharacterized protein At3g49720	AT3G49720.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g05070.1	expressed protein	Medtr2g010600.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.2667.1.S1_s_at	A	A1TS	POPTR_0017s07700	POPTR_0017s07700 (11)	scaffold_17:5981780-5982027(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2668.1.A1_at	A	A1TS	POPTR_0010s24560	POPTR_0010s24560 (11)	scaffold_10:20719842-20720266(+) (11)	NA	P27788	"Ferredoxin-3, chloroplastic"	AT2G27510.1	ferredoxin 3 	LOC_Os03g61960.2	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr2g107770.1	"Ferredoxin [2Fe-2S], plant "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.2672.1.A1_at	A	A1TS	POPTR_0008s00800	POPTR_0008s00800 (11)	scaffold_8:357201-358237(+) (11)	NA	Q9C512	"Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1"	AT1G51590.1	alpha-mannosidase 1 	LOC_Os04g51690.1	"glycosyl hydrolase family 47 domain contain protein, expressed"	Medtr8g129800.1	"Glycoside hydrolase, family 47 "	NA	"GO:0004571|""mannosyl-oligosaccharide 1,2-alpha-mannosidase activity""||GO:0005509|calcium ion binding"	GO:0016020|membrane
Ptp.2675.1.S1_s_at	A	A1TS	POPTR_0010s14710	POPTR_0010s14710 (11)	scaffold_10:14225836-14225995(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G13635.2	DNA glycosylase superfamily protein 	LOC_Os08g38170.1	"methyladenine glycosylase, putative, expressed"	Medtr8g077310.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
Ptp.2676.1.S1_at	A	A1TS	POPTR_0016s08890	POPTR_0016s08890 (11)	scaffold_16:6690388-6690462(-) (11)	NA	Q7XLX6	DNA-binding protein S1FA2	AT2G37120.1	S1FA-like DNA-binding protein 	LOC_Os04g33440.2	"DNA-binding protein S1FA, putative, expressed"	Medtr7g121080.1	DNA binding protein S1FA 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.2677.1.S1_at	A	A1TS	POPTR_0002s05020	POPTR_0002s05020 (10)	scaffold_2:3211874-3212236(-) (10)	NA	A2ZMH2	Serine/threonine-protein kinase Nek2	AT3G04810.2	NIMA-related kinase 2 	LOC_Os12g41180.1	"LSTK-1-like kinase, putative, expressed"	Medtr1g083910.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2678.1.S1_s_at	A	A2TS	POPTR_0012s09510	POPTR_0012s09510 (11)//POPTR_0015s10280 (11)	scaffold_12:10511940-10512475(+) (11)//scaffold_15:11245151-11245768(+) (11)	NA	Q93Y35	Probable 26S proteasome non-ATPase regulatory subunit 6	AT4G24820.2	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os04g40850.1	"26S proteasome non-ATPase regulatory subunit 6, putative, expressed"	Medtr8g109840.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2679.1.S1_at	A	A1TS	POPTR_0010s09350	POPTR_0010s09350 (11)	scaffold_10:10206991-10207347(-) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2679.1.S1_s_at	A	A1TS	POPTR_0010s09350	POPTR_0010s09350 (11)	scaffold_10:10207181-10207421(-) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2681.1.S1_s_at	A	A1TS	POPTR_0010s15720	POPTR_0010s15720 (11)	scaffold_10:14850124-14850594(+) (11)	NA	Q9LSN7	Transcription factor bHLH147	AT3G17100.2	sequence-specific DNA binding transcription factors 	LOC_Os03g19780.1	expressed protein	Medtr8g137080.1	transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2683.1.S1_a_at	A	A1TS	POPTR_0013s13680	POPTR_0013s13680 (9)	scaffold_13:14102077-14102319(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2686.1.S1_s_at	A	A1TS	POPTR_0004s03410	POPTR_0004s03410 (11)	scaffold_4:2347738-2348162(-) (11)	POPTR_0011s04220 (6)	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G05020.1	NAD(P)H dehydrogenase B2 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.2687.1.S1_at	A	A1TS	POPTR_0001s17500	POPTR_0001s17500 (9)	scaffold_1:14291526-14291879(+) (9)	NA	Q99685	Monoglyceride lipase	AT1G52760.1	lysophospholipase 2 	LOC_Os02g11720.1	"lipase, putative, expressed"	Medtr8g129890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2689.1.S1_at	A	A1MS	POPTR_0001s25210	POPTR_0001s25210 (9)	scaffold_1:24398450-24398963(-) (9)	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT1G07420.1	sterol 4-alpha-methyl-oxidase 2-1 	LOC_Os07g01150.3	"fatty acid hydroxylase, putative, expressed"	Medtr5g036470.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
Ptp.2693.1.A1_at	A	A1TS	POPTR_0005s06390	POPTR_0005s06390 (9)	scaffold_5:4260015-4260563(+) (9)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G20015.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58070.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2694.2.S1_s_at	A	A1TS	POPTR_0010s18300	POPTR_0010s18300 (11)	scaffold_10:16595565-16596206(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT1G79270.1	evolutionarily conserved C-terminal region 8 	LOC_Os01g48790.1	"YT521-B-like family domain containing protein, expressed"	Medtr2g085380.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2696.1.S1_at	A	A1TS	POPTR_0010s08380	POPTR_0010s08380 (9)	scaffold_10:9318413-9318554(-) (9)	NA	Q8H1S4	1-aminocyclopropane-1-carboxylate oxidase homolog 4	AT1G06650.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.2699.1.A1_s_at	A	A1TS	POPTR_0006s06180	POPTR_0006s06180 (11)	scaffold_6:4392880-4393071(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.2700.1.S1_at	A	A1TS	POPTR_0019s08570	POPTR_0019s08570 (11)	scaffold_19:10077903-10078038(-) (11)	NA	O22874	Expansin-A8	AT2G40610.1	expansin A8 	LOC_Os01g60770.1	"expansin precursor, putative, expressed"	Medtr5g083140.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2701.1.S1_at	A	A1TS	POPTR_0010s19850	POPTR_0010s19850 (11)	scaffold_10:17641541-17642207(-) (11)	NA	Q9FFK1	Syntaxin-31	AT5G05760.1	syntaxin of plants 31 	LOC_Os01g08400.1	"syntaxin, putative, expressed"	Medtr5g101030.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
Ptp.2702.1.A1_x_at	A	A1TS	POPTR_0017s00400	POPTR_0017s00400 (11)	scaffold_17:125718-126160(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2703.2.S1_at	A	A1MS	POPTR_0002s13940	POPTR_0002s13940 (11)	scaffold_2:10339931-10340407(+) (11)	NA	O23676	Protein mago nashi homolog	AT1G02140.1	mago nashi family protein 	LOC_Os12g18880.1	"mago nashi, putative, expressed"	Medtr3g163680.1	Mago nashi protein 	NA	NA	GO:0005634|nucleus
Ptp.2706.1.S1_s_at	A	A1TS	POPTR_0015s14780	POPTR_0015s14780 (11)	scaffold_15:14254327-14254884(-) (11)	NA	Q8VXX5	Monocopper oxidase-like protein SKS1	AT4G25240.1	SKU5 similar 1 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr3g010000.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2708.1.S1_at	A	A1TS	POPTR_0008s09390	POPTR_0008s09390 (10)	scaffold_8:5817540-5818044(+) (10)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT3G29360.2	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25700.3	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr5g046790.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.2709.1.A1_at	A	A1TS	POPTR_0002s19110	POPTR_0002s19110 (9)	scaffold_2:15036354-15036767(+) (9)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g133540.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.271.1.A1_at	A	A1TS	POPTR_0003s05060	POPTR_0003s05060 (11)	scaffold_3:6249431-6249878(-) (11)	NA	Q0WVL7	Golgin candidate 5	AT1G79830.3	golgin candidate 5 	LOC_Os05g48620.1	"tRNA-binding arm, putative, expressed"	Medtr2g122720.1	"tRNA-binding arm; t-snare, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2711.1.S1_at	A	A1TS	POPTR_0004s24400	POPTR_0004s24400 (11)	scaffold_4:23079556-23079998(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
Ptp.2711.2.S1_a_at	A	A1TS	POPTR_0003s03960	POPTR_0003s03960 (11)	scaffold_3:4554091-4554857(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
Ptp.2711.2.S1_s_at	A	A1TS	POPTR_0003s03960	POPTR_0003s03960 (11)	scaffold_3:4554014-4554417(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
Ptp.2714.1.S1_at	A	A1TS	POPTR_0010s26100	POPTR_0010s26100 (9)	scaffold_10:21454560-21455118(+) (9)	NA	Q9M1H3	ABC transporter F family member 4	AT3G54540.1	general control non-repressible 4 	LOC_Os03g32630.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g089230.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.2716.1.S1_at	A	A1TS	POPTR_0015s09000	POPTR_0015s09000 (11)	scaffold_15:10329980-10330944(-) (11)	NA	Q8L8T2	Glutaredoxin-C1	AT5G63030.1	Thioredoxin superfamily protein 	LOC_Os02g40500.1	"OsGrx_C2.1 - glutaredoxin subgroup I, expressed"	Medtr3g114230.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.2717.1.S1_a_at	A	A1TS	POPTR_0017s12290	POPTR_0017s12290 (10)	scaffold_17:12509884-12510030(-) (10)	NA	Q9FKA5	Uncharacterized protein At5g39570	AT5G39570.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g12580.1	"pro-resilin precursor, putative, expressed"	Medtr6g013300.1	"Stress protein DDR48, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2717.2.S1_s_at	A	A1TS	POPTR_0008s13200	POPTR_0008s13200 (11)	scaffold_8:8651871-8652306(+) (11)	NA	Q9CAC1	Endoglucanase 8	AT1G70710.1	glycosyl hydrolase 9B1 	LOC_Os06g14540.1	"endoglucanase, putative, expressed"	Medtr4g157670.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2718.1.A1_s_at	A	A1TS	POPTR_0016s05450	POPTR_0016s05450 (11)	scaffold_16:3377813-3378648(-) (11)	NA	Q64520	Guanylate kinase	AT3G57550.2	guanylate kinase 	LOC_Os12g33100.1	"guanylate kinase, putative, expressed"	Medtr7g110630.2	Guanylate kinase/L-type calcium channel region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2719.1.S1_at	A	A1TS	POPTR_0010s13190	POPTR_0010s13190 (10)	scaffold_10:13069617-13070050(+) (10)	POPTR_0008s12230 (8)	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
Ptp.2719.2.A1_at	A	A1TS	POPTR_0010s13190	POPTR_0010s13190 (10)	scaffold_10:13070889-13075134(+) (10)	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
Ptp.272.2.A1_a_at	A	A1TS	POPTR_0001s35450	POPTR_0001s35450 (11)	scaffold_1:33787963-33788166(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G14500.1	aldose 1-epimerase family protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.2724.1.S1_s_at	A	A1TS	POPTR_0034s00210	POPTR_0034s00210 (11)	scaffold_34:105790-106937(+) (11)	NA	NA	NA	AT3G21400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g35550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2727.1.S1_s_at	A	A1TS	POPTR_0009s08000	POPTR_0009s08000 (11)	scaffold_9:7421363-7423141(-) (11)	POPTR_0001s28790 (6)	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os03g18454.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed"	Medtr3g034410.1	"Gamma-interferon-inducible lysosomal thiol reductase precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2730.1.S1_s_at	A	A1TS	POPTR_0019s08290	POPTR_0019s08290 (11)	scaffold_19:9771347-9771387(-) (11)	NA	O04153	Calreticulin-3	AT1G08450.1	calreticulin 3 	LOC_Os05g43170.1	"calreticulin precursor protein, putative, expressed"	Medtr7g089980.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.274.1.S1_at	A	A1TS	POPTR_0016s08770	POPTR_0016s08770 (11)	scaffold_16:6565799-6566593(-) (11)	NA	Q9Z137	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2	AT2G37090.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g17850.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr7g120990.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
Ptp.2741.1.S1_s_at	A	A2TS	POPTR_0002s07890	POPTR_0002s07890 (11)//POPTR_0005s20510 (11)	scaffold_2:5417177-5418003(-) (11)//scaffold_5:19564407-19565219(+) (11)	NA	Q9C5W3	"NAD kinase 2, chloroplastic"	AT1G21640.1	NAD kinase 2 	LOC_Os11g08670.1	"NAD kinase, putative, expressed"	Medtr4g104490.1	ATP-NAD/AcoX kinase 	GO:0008152|metabolic process	GO:0003951|NAD+ kinase activity	NA
Ptp.2748.1.A1_s_at	A	A1TS	POPTR_0002s11230	POPTR_0002s11230 (11)	scaffold_2:8299166-8299372(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT5G49660.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os12g43660.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.275.2.S1_s_at	A	A1TS	POPTR_0001s34410	POPTR_0001s34410 (11)	scaffold_1:32561527-32561820(+) (11)	NA	NA	NA	AT1G29395.1	COLD REGULATED 314 INNER MEMBRANE 1 	LOC_Os05g49170.1	"cold acclimation protein WCOR413, putative, expressed"	Medtr4g136630.1	Cold acclimation WCOR413 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2750.1.S1_s_at	A	A1TS	POPTR_0007s13260	POPTR_0007s13260 (11)	scaffold_7:13379182-13379350(-) (11)	NA	Q9AR07	Jasmonate O-methyltransferase	AT1G19640.1	jasmonic acid carboxyl methyltransferase 	LOC_Os11g15130.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr5g020860.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.2751.1.S1_at	A	A1TS	POPTR_0003s10790	POPTR_0003s10790 (9)	scaffold_3:11675857-11677443(-) (9)	NA	Q9C5Y4	Structural maintenance of chromosomes protein 2-1	AT5G62410.1	structural maintenance of chromosomes 2 	LOC_Os01g67740.1	"chromosome segregation protein, putative, expressed"	Medtr8g087350.1	Prefoldin; SMCs flexible hinge 	GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane||GO:0005694|chromosome
Ptp.2753.1.S1_at	A	A1TS	POPTR_0004s05550	POPTR_0004s05550 (9)	scaffold_4:4299077-4299666(+) (9)	NA	Q9UNI6	Dual specificity protein phosphatase 12	AT4G18593.1	dual specificity protein phosphatase-related 	LOC_Os02g15270.1	"tyrosine-protein phosphatase YVH1, putative, expressed"	Medtr7g106530.1	Dual specificity protein phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2754.1.A1_a_at	A	A1TS	POPTR_0008s11610	POPTR_0008s11610 (11)	scaffold_8:7404022-7405753(+) (11)	NA	Q9FV52	"Methionine aminopeptidase 1B, chloroplastic"	AT1G13270.1	methionine aminopeptidase 1B 	LOC_Os04g52100.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g069010.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.2754.1.A1_at	A	A1TS	POPTR_0008s11610	POPTR_0008s11610 (10)	scaffold_8:7403656-7406564(+) (10)	NA	Q9FV52	"Methionine aminopeptidase 1B, chloroplastic"	AT1G13270.1	methionine aminopeptidase 1B 	LOC_Os04g52100.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g069010.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.2758.2.S1_at	A	A2TA	POPTR_0012s02460	POPTR_0012s02460 (10)//POPTR_0015s01270 (9)	scaffold_12:2025602-2025847(+) (10)//scaffold_15:801550-801784(-) (9)	NA	P70168	Importin subunit beta-1	AT5G53480.1	ARM repeat superfamily protein 	LOC_Os12g38110.1	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
Ptp.2759.1.S1_at	A	A1TS	POPTR_0002s25120	POPTR_0002s25120 (11)	scaffold_2:22309861-22310115(-) (11)	NA	Q9SW95	"Asparaginyl-tRNA synthetase, cytoplasmic 2"	AT3G07420.1	asparaginyl-tRNA synthetase 2 	LOC_Os01g27520.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr8g011980.1	"tRNA synthetase, class II (D, K and N) "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.2765.2.S1_s_at	A	A1TS	POPTR_0012s01730	POPTR_0012s01730 (11)	scaffold_12:1302811-1302903(-) (11)	NA	Q94BN2	Spermine synthase	AT5G53120.5	spermidine synthase 3 	LOC_Os02g15550.2	"spermidine synthase, putative, expressed"	Medtr3g124370.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.2766.1.S1_s_at	A	A1TS	POPTR_0001s46400	POPTR_0001s46400 (10)	scaffold_1:46791689-46792084(-) (11)	NA	Q9SA77	UDP-arabinose 4-epimerase 1	AT1G30620.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g04690.2	"UDP-arabinose 4-epimerase 1, putative, expressed"	Medtr4g137730.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2769.1.S1_a_at	A	A1TS	POPTR_0001s01810	POPTR_0001s01810 (11)	scaffold_1:1317113-1317367(+) (11)	NA	Q8VZC9	Vacuolar protein sorting-associated protein 25	AT4G19003.1	E2F/DP family winged-helix DNA-binding domain 	LOC_Os01g46932.1	"vacuolar protein-sorting-associated protein 25, putative, expressed"	Medtr5g028140.1	"ESCRT-II complex, vps25 subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2774.1.S1_at	A	A1TS	POPTR_0003s21780	POPTR_0003s21780 (11)	scaffold_3:19813314-19813856(-) (11)	NA	Q7F8R0	Zinc finger CCCH domain-containing protein 14	AT3G12130.1	KH domain-containing protein / zinc finger (CCCH type) family protein 	LOC_Os02g10080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g111840.1	"Zinc finger, CCCH-type; KH, type 1 "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
Ptp.2780.1.S1_at	A	A1TS	POPTR_0008s17950	POPTR_0008s17950 (11)	scaffold_8:12047040-12047079(+) (11)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2780.1.S1_s_at	A	A1TS	POPTR_0008s17950	POPTR_0008s17950 (11)	scaffold_8:12047362-12047731(+) (11)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2780.2.S1_a_at	A	A1TS	POPTR_0008s17950	POPTR_0008s17950 (9)	scaffold_8:12046814-12046846(+) (9)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2781.1.S1_a_at	A	A1TS	POPTR_0001s34670	POPTR_0001s34670 (11)	scaffold_1:32939897-32940440(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2781.2.S1_at	A	A1MS	POPTR_0001s34690	POPTR_0001s34690 (11)	scaffold_1:32942895-32943035(-) (11)	NA	Q9SJ89	"Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic"	AT2G04700.1	ferredoxin thioredoxin reductase catalytic beta chain family protein 	LOC_Os09g07570.1	"ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed"	Medtr6g008880.1	"Ferredoxin thioredoxin reductase, beta chain "	GO:0055114|oxidation reduction	GO:0008937|ferredoxin reductase activity	NA
Ptp.2781.3.A1_a_at	A	A1MS	POPTR_0001s34690	POPTR_0001s34690 (11)	scaffold_1:32943081-32943181(-) (11)	NA	Q9SJ89	"Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic"	AT2G04700.1	ferredoxin thioredoxin reductase catalytic beta chain family protein 	LOC_Os09g07570.1	"ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed"	Medtr6g008880.1	"Ferredoxin thioredoxin reductase, beta chain "	GO:0055114|oxidation reduction	GO:0008937|ferredoxin reductase activity	NA
Ptp.2783.1.A1_at	A	A1TS	POPTR_0008s19150	POPTR_0008s19150 (10)	scaffold_8:13124426-13124901(-) (10)	NA	NA	NA	AT5G40460.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g034560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2784.1.A1_s_at	A	A1TS	POPTR_0005s20170	POPTR_0005s20170 (11)	scaffold_5:19231637-19231902(+) (11)	NA	Q9SCJ9	Ubiquitin carboxyl-terminal hydrolase 26	AT3G49600.1	ubiquitin-specific protease 26 	LOC_Os03g09260.1	"ubiquitin carboxyl-terminal hydrolase 26, putative, expressed"	Medtr3g133630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.2785.1.S1_at	A	A1TS	POPTR_0003s21660	POPTR_0003s21660 (9)	scaffold_3:19731722-19731878(+) (9)	NA	Q42517	Peroxidase N	AT5G19890.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr2g046610.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2786.1.S1_at	A	A1TS	POPTR_0011s12070	POPTR_0011s12070 (11)	scaffold_11:14850746-14851051(-) (11)	NA	P46032	Peptide transporter PTR2	AT2G02040.1	peptide transporter 2 	LOC_Os03g51050.1	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2787.1.S1_s_at	A	A1TS	POPTR_0010s06730	POPTR_0010s06730 (11)	scaffold_10:8012183-8014294(-) (11)	NA	A2A4P0	ATP-dependent RNA helicase DHX8	AT1G27900.1	RNA helicase family protein 	LOC_Os11g20554.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.2791.1.S1_s_at	A	A1TS	POPTR_0001s38070	POPTR_0001s38070 (11)	scaffold_1:37105448-37105789(+) (11)	NA	NA	NA	AT4G21740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g136820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2794.1.S1_s_at	A	A1TS	POPTR_0008s13040	POPTR_0008s13040 (11)	scaffold_8:8497469-8498336(-) (11)	NA	Q9ZVF3	MLP-like protein 328	AT1G14930.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr1g034930.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.2796.1.S1_at	A	A1TS	POPTR_0019s09210	POPTR_0019s09210 (10)	scaffold_19:10781117-10781570(-) (10)	NA	Q9C502	Putative clathrin assembly protein At1g33340	AT1G33340.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os11g14000.1	"ANTH domain containing protein, expressed"	Medtr6g070790.1	ENTH/VHS; ANTH 	NA	GO:0005543|phospholipid binding	NA
Ptp.2798.1.S1_at	A	A1TS	POPTR_0011s16560	POPTR_0011s16560 (11)	scaffold_11:18412055-18412283(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44440.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.280.1.A1_at	A	A1TS	POPTR_0002s08240	POPTR_0002s08240 (11)	scaffold_2:5722267-5723329(+) (11)	NA	Q42592	"L-ascorbate peroxidase S, chloroplastic/mitochondrial"	AT4G08390.2	stromal ascorbate peroxidase 	LOC_Os12g07820.1	"OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr3g100720.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2801.1.A1_at	A	A1TS	POPTR_0001s16590	POPTR_0001s16590 (11)	scaffold_1:13354449-13355933(+) (11)	NA	Q94AU2	25.3 kDa vesicle transport protein	AT1G11890.1	Synaptobrevin family protein 	LOC_Os06g09850.1	"25.3 kDa vesicle transport protein, putative, expressed"	Medtr8g025760.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.2803.1.A1_at	A	A1TS	POPTR_0002s03340	POPTR_0002s03340 (11)	scaffold_2:2057645-2058149(-) (11)	NA	Q40517	Mitogen-activated protein kinase homolog NTF3	AT1G10210.2	mitogen-activated protein kinase 1 	LOC_Os06g48590.2	"CGMC_MAPKCMGC_2_SLT2y_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g134400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2806.1.S1_s_at	A	A1TS	POPTR_0005s04040	POPTR_0005s04040 (11)	scaffold_5:2685366-2685498(-) (11)	NA	O23732	"Glutathione synthetase, chloroplastic"	AT5G27380.1	glutathione synthetase 2 	LOC_Os11g42350.3	"glutathione synthetase, chloroplast precursor, putative, expressed"	Medtr7g139670.1	"Eukaryotic glutathione synthase; Eukaryotic glutathione synthase, ATP-binding; "	GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004363|glutathione synthase activity||GO:0005524|ATP binding	NA
Ptp.2809.1.A1_s_at	A	A1TS	POPTR_0004s19400	POPTR_0004s19400 (11)	scaffold_4:19253183-19253630(+) (11)	NA	Q4V8J4	Glycerol-3-phosphate acyltransferase 3	AT5G60620.1	glycerol-3-phosphate acyltransferase 9 	LOC_Os07g34730.1	"acyltransferase, putative, expressed"	Medtr8g129160.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.2810.1.S1_s_at	A	A1TS	POPTR_0003s06590	POPTR_0003s06590 (11)	scaffold_3:8101132-8101375(-) (11)	NA	Q9Y4D2	Sn1-specific diacylglycerol lipase alpha	AT3G14075.2	"Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 "	LOC_Os02g54010.1	"lipase class 3 family protein, putative, expressed"	Medtr8g025380.1	"lipase class 3 family protein, related "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.2817.1.S1_a_at	A	A1TS	POPTR_0006s22650	POPTR_0006s22650 (11)	scaffold_6:21592202-21593459(+) (11)	NA	NA	NA	AT2G36145.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g64270.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2818.1.S1_at	A	A1TS	POPTR_0010s25420	POPTR_0010s25420 (10)	scaffold_10:21109866-21110307(-) (10)	NA	O94901	SUN domain-containing protein 1	AT5G04990.1	SAD1/UNC-84 domain protein 1 	LOC_Os01g16220.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr8g047470.1	"Sad1/UNC-like, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2819.1.S1_s_at	A	A3TS	POPTR_0004s24010	POPTR_0004s24020 (11)//POPTR_0018s00260 (11)//POPTR_0004s24010 (11)	scaffold_18:72986-73224(-) (11)//scaffold_4:22655452-22655690(-) (11)//scaffold_4:22682229-22682467(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.2	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2823.1.S1_s_at	A	A1TS	POPTR_0015s11660	POPTR_0015s11660 (11)	scaffold_15:12210604-12211179(-) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os12g29520.4	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.2825.1.S1_s_at	A	A1TS	POPTR_0014s06570	POPTR_0014s06570 (11)	scaffold_14:4994764-4995296(+) (11)	NA	NA	NA	AT3G60850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g14290.1	expressed protein	AC233684_2.1	hypothetical protein AC233684.2 2311-2939 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2828.1.A1_at	A	A1TS	POPTR_0006s11430	POPTR_0006s11430 (11)	scaffold_6:8663696-8664213(+) (11)	NA	Q9FM85	Probable receptor-like protein kinase At5g56460	AT5G01020.1	Protein kinase superfamily protein 	LOC_Os12g02810.1	"protein kinase domain containing protein, expressed"	Medtr7g081040.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.283.1.A1_at	A	A1TS	POPTR_0004s09660	POPTR_0004s09660 (10)	scaffold_4:8176068-8176574(+) (10)	NA	Q6DEY3	Abhydrolase domain-containing protein FAM108B1	AT5G38220.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g49510.1	"OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g032300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2830.1.A1_at	A	A1TS	POPTR_0001s13180	POPTR_0001s13180 (11)	scaffold_1:10251301-10251462(-) (11)	NA	Q8LL04	RNA polymerase II C-terminal domain phosphatase-like 3	AT2G33540.1	C-terminal domain phosphatase-like 3 	LOC_Os11g31890.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr7g020970.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
Ptp.2832.1.A1_at	A	A1TS	POPTR_0016s13940	POPTR_0016s13940 (9)	scaffold_16:13170080-13170560(+) (9)	NA	Q68FJ8	TOM1-like protein 2	AT2G38410.1	ENTH/VHS/GAT family protein 	LOC_Os05g39760.1	"VHS and GAT domain containing protein, expressed"	Medtr7g077730.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
Ptp.2834.1.S1_s_at	A	A1TS	POPTR_0010s21140	POPTR_0010s21140 (11)	scaffold_10:18547585-18547784(+) (11)	NA	NA	NA	AT3G55420.1	unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g38470.2	expressed protein	Medtr7g027080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2835.1.S1_at	A	A1MS	POPTR_0018s12700	POPTR_0018s12700 (9)	scaffold_18:13216994-13217543(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2836.1.S1_at	A	A1TS	POPTR_0009s08970	POPTR_0009s08970 (10)	scaffold_9:8060962-8061424(+) (10)	NA	NA	NA	AT1G49975.1	"INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr3g010060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2838.1.S1_at	A	A1TS	POPTR_0002s11290	POPTR_0002s11290 (11)	scaffold_2:8346394-8346703(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT1G51580.1	RNA-binding KH domain-containing protein 	LOC_Os01g13470.1	"KH domain containing protein, putative, expressed"	Medtr3g127960.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.2839.1.S1_at	A	A1MS	POPTR_0012s10840	POPTR_0012s10840 (9)	scaffold_12:11539879-11540369(+) (9)	NA	Q55467	Magnesium-protoporphyrin O-methyltransferase	AT4G25080.5	magnesium-protoporphyrin IX methyltransferase 	LOC_Os06g04150.1	"magnesium-protoporphyrin O-methyltransferase, putative, expressed"	Medtr4g152280.1	Magnesium protoporphyrin O-methyltransferase 	GO:0015979|photosynthesis||GO:0015995|chlorophyll biosynthetic process	GO:0046406|magnesium protoporphyrin IX methyltransferase activity	NA
Ptp.284.1.A1_at	A	A1TS	POPTR_0008s20480	POPTR_0008s20480 (11)	scaffold_8:14249921-14250230(+) (11)	NA	P54567	Uncharacterized protein yqkD	AT4G14290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g24450.1	"OsPOP8 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr2g026400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2840.1.S1_s_at	A	A1TS	POPTR_0014s16740	POPTR_0014s16740 (11)	scaffold_14:12824110-12825990(-) (11)	POPTR_0014s16770 (6)	NA	NA	AT2G04340.1	unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g30140.1	expressed protein	Medtr4g114840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2843.1.S1_at	A	A1TS	POPTR_0014s08540	POPTR_0014s08540 (9)	scaffold_14:6344040-6344320(-) (9)	NA	NA	NA	AT1G01500.1	Erythronate-4-phosphate dehydrogenase family protein 	LOC_Os03g56420.1	expressed protein	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2845.1.S1_at	A	A1TA	POPTR_0014s01910	POPTR_0014s01910 (9)	scaffold_14:1735511-1735983(-) (9)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.2847.1.A1_at	A	A1TS	POPTR_0001s35680	POPTR_0001s35680 (11)	scaffold_1:34032294-34032824(+) (11)	NA	O48963	Phototropin-1	AT3G45780.2	phototropin 1 	LOC_Os12g01140.1	"AGC_PVPK_like_kin82y.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2850.1.S1_at	A	A1TS	POPTR_0004s01410	POPTR_0004s01410 (9)	scaffold_4:787788-789144(-) (9)	NA	Q43846	"Soluble starch synthase 3, chloroplastic/amyloplastic"	AT1G11720.2	starch synthase 3 	LOC_Os04g53310.1	"soluble starch synthase 3, chloroplast precursor, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2854.1.A1_at	A	A1TS	POPTR_0012s07620	POPTR_0012s07620 (11)	scaffold_12:8537386-8537874(+) (11)	NA	P34909	General negative regulator of transcription subunit 4	AT5G62910.1	RING/U-box superfamily protein 	LOC_Os02g37030.1	"protein binding protein, putative, expressed"	Medtr6g009590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2855.1.A1_at	A	A1MS	POPTR_0001s17790	POPTR_0001s17790 (9)	scaffold_1:14662608-14662693(-) (9)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os11g43820.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2857.1.S1_s_at	A	A1TS	POPTR_0013s11030	POPTR_0013s11030 (11)	scaffold_13:11702443-11703931(+) (11)	NA	NA	NA	AT1G35340.1	ATP-dependent protease La (LON) domain protein 	LOC_Os11g11210.1	"OsClp12 - Putative Clp protease homologue, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
Ptp.2859.1.A1_s_at	A	A1TS	POPTR_0004s05670	POPTR_0004s05670 (11)	scaffold_4:4432213-4432260(-) (11)	NA	Q96SZ5	2-aminoethanethiol dioxygenase	AT3G58670.3	Protein of unknown function (DUF1637) 	LOC_Os04g06790.2	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g009090.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
Ptp.286.1.A1_at	A	A1TS	POPTR_0009s03960	POPTR_0009s03960 (9)	scaffold_9:4531888-4533260(-) (9)	NA	Q9M2S6	E3 ubiquitin-protein ligase SDIR1	AT3G55530.1	RING/U-box superfamily protein 	LOC_Os03g16570.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g084210.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2864.1.S1_s_at	A	A1TS	POPTR_0013s13000	POPTR_0013s13000 (11)	scaffold_13:13585332-13585604(-) (11)	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2864.2.S1_at	A	A1MS	POPTR_0013s13000	POPTR_0013s13000 (11)	scaffold_13:13580526-13580722(-) (11)	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2866.1.S1_at	A	A1MS	POPTR_0006s09310	POPTR_0006s09310 (10)	scaffold_6:6837121-6837413(-) (10)	NA	P0CI03	Putative peptide/nitrate transporter At2g37900	AT2G37900.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2869.1.A1_at	A	A1TS	POPTR_0001s46570	POPTR_0001s46570 (11)	scaffold_1:46941370-46941820(+) (11)	NA	Q94C59	Patellin-4	AT1G30690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os06g45990.2	"patellin-5, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.287.1.A1_s_at	A	A1TS	POPTR_0001s17370	POPTR_0001s17370 (11)	scaffold_1:14173027-14173414(-) (11)	NA	P00428	"Cytochrome c oxidase subunit 5B, mitochondrial"	AT1G80230.1	Rubredoxin-like superfamily protein 	LOC_Os06g05080.1	"cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed"	Medtr2g125770.1	"Cytochrome c oxidase, subunit Vb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005740|mitochondrial envelope
Ptp.2875.1.S1_at	A	A1TS	POPTR_0004s10790	POPTR_0004s10790 (9)	scaffold_4:9334252-9334800(+) (9)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT5G16000.1	NSP-interacting kinase 1 	LOC_Os06g16330.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2876.1.A1_at	A	A1TA	POPTR_0013s11910	POPTR_0013s11910 (10)	scaffold_13:12535269-12535578(+) (10)	NA	NA	NA	AT1G34355.1	forkhead-associated (FHA) domain-containing protein  	LOC_Os11g07050.1	"FHA domain containing protein, putative, expressed"	Medtr1g122320.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.288.1.A1_s_at	A	A1TS	POPTR_0003s14360	POPTR_0003s14360 (9)	scaffold_3:14450888-14451426(+) (9)	NA	Q03685	Luminal-binding protein 5	AT5G42020.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2885.1.S1_s_at	A	A2TS	POPTR_0013s07710	POPTR_0019s07170 (11)//POPTR_0013s07710 (11)	scaffold_13:6558762-6558952(+) (11)//scaffold_19:7915076-7915293(+) (11)	NA	Q5U2W5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
Ptp.2885.2.A1_at	A	A1TS	POPTR_0013s07710	POPTR_0013s07710 (11)	scaffold_13:6558945-6559114(+) (11)	NA	Q5U2W5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
Ptp.2888.1.S1_at	A	A1TS	POPTR_0001s24390	POPTR_0001s24390 (10)	scaffold_1:23677887-23678016(-) (10)	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr2g114650.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2888.2.S1_a_at	A	A1TS	POPTR_0001s24390	POPTR_0001s24390 (11)	scaffold_1:23677252-23677560(-) (11)	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr2g114650.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.289.1.S1_at	A	A1TS	POPTR_0004s24210	POPTR_0004s24210 (10)	scaffold_4:22913446-22914220(-) (10)	NA	Q8R116	Protein notum homolog	AT5G45280.2	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2890.1.A1_at	A	A1TS	POPTR_0010s23910	POPTR_0010s23910 (10)	scaffold_10:20365198-20366066(+) (10)	POPTR_0008s02890 (6)	Q4V3C8	3-phosphoinositide-dependent protein kinase 2	AT3G10540.1	3-phosphoinositide-dependent protein kinase 	LOC_Os01g65230.1	"AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g139660.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2891.1.S1_s_at	A	A1TS	POPTR_0003s08120	POPTR_0003s08120 (10)	scaffold_3:9551819-9552150(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2893.1.S1_s_at	A	A1TS	POPTR_0005s27240	POPTR_0005s27240 (11)	scaffold_5:24972620-24973383(-) (11)	NA	P30924	"1,4-alpha-glucan-branching enzyme"	AT5G03650.1	starch branching enzyme 2.2 	LOC_Os06g51084.1	"1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed"	Medtr7g126840.1	"Alpha amylase, C-terminal all-beta; "	GO:0005975|carbohydrate metabolic process	"GO:0043169|cation binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2900.1.S1_at	A	A1TS	POPTR_0003s11650	POPTR_0003s11650 (11)	scaffold_3:12426759-12427239(-) (11)	NA	Q2RNG2	[Protein-PII] uridylyltransferase	AT1G12420.1	ACT domain repeat 8 	LOC_Os08g02500.1	"ACT domain containing protein, putative"	Medtr8g106560.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
Ptp.2903.1.A1_s_at	A	A2TS	POPTR_0012s01620	POPTR_0012s01620 (11)//POPTR_0012s01630 (11)	scaffold_12:1237445-1237480(+) (11)//scaffold_12:1244496-1244531(+) (11)	NA	Q39219	"Alternative oxidase 1a, mitochondrial"	AT3G22370.1	alternative oxidase 1A 	LOC_Os04g51150.1	"transposon protein, putative, unclassified, expressed"	Medtr5g026770.1	Alternative oxidase 	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
Ptp.2904.1.S1_s_at	A	A1TS	POPTR_0001s04310	POPTR_0001s04310 (11)	scaffold_1:3405580-3406985(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134180.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity"	NA
Ptp.2906.1.S1_at	A	A1TS	POPTR_0011s01410	POPTR_0011s01410 (11)	scaffold_11:989924-990350(-) (11)	NA	NA	NA	AT1G62305.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g50040.1	"DNA binding protein, putative, expressed"	Medtr4g143290.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.2908.1.A1_at	A	A1TS	POPTR_0013s07150	POPTR_0013s07150 (11)	scaffold_13:5878869-5881489(+) (11)	NA	P38935	DNA-binding protein SMUBP-2	AT5G35970.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g04440.1	"DNA-binding protein, putative, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2909.1.A1_s_at	A	A5TS	POPTR_0019s01340	POPTR_0121s00210 (11)//POPTR_0019s01340 (11)//POPTR_0121s00230 (11)//POPTR_0019s01460 (11)//POPTR_0019s01370 (9)	scaffold_121:8953-9064(-) (11)//scaffold_121:28975-29086(-) (11)//scaffold_19:1181067-1181178(+) (11)//scaffold_19:1197418-1197514(+) (9)//scaffold_19:1275577-1275688(+) (11)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
Ptp.291.1.S1_s_at	A	A1TS	POPTR_0016s03510	POPTR_0016s03510 (11)	scaffold_16:1877246-1877519(-) (11)	NA	Q6NLB1	F-box protein At2g26850	AT2G26850.1	F-box family protein 	LOC_Os01g17390.1	"OsFBX5 - F-box domain containing protein, expressed"	Medtr5g096190.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2911.1.S1_at	A	A1TS	POPTR_0006s21950	POPTR_0006s21950 (11)	scaffold_6:20912560-20912773(-) (11)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2919.1.S1_a_at	A	A1TS	POPTR_0005s04150	POPTR_0005s04150 (11)	scaffold_5:2741319-2741360(+) (11)//scaffold_526:3331-3372(-) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT5G06060.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2919.2.A1_s_at	A	A2TS	POPTR_0005s04130	POPTR_0005s04130 (11)//POPTR_0526s00230 (11)	scaffold_5:2731411-2733504(+) (11)//scaffold_526:307-13961(-) (11)	NA	Q9ASR4	Branched-chain-amino-acid aminotransferase-like protein 2	AT5G27410.2	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os03g24460.2	"aminotransferase domain containing protein, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2919.3.S1_at	A	A1TA	POPTR_0526s00210	POPTR_0526s00210 (11)	scaffold_526:3174-3630(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2920.1.S1_at	A	A1TS	POPTR_0006s08230	POPTR_0006s08230 (11)	scaffold_6:5977685-5978473(+) (11)	NA	Q9M531	Histone H2A	AT5G02560.1	histone H2A 12 	LOC_Os05g02300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr2g114590.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2922.1.S1_at	A	A1TS	POPTR_0009s11840	POPTR_0009s11840 (11)	scaffold_9:9748485-9749007(-) (11)	NA	P54654	Adenylyl cyclase-associated protein	AT4G34490.1	cyclase associated protein 1 	LOC_Os03g51250.1	"adenylyl cyclase-associated protein, putative, expressed"	Medtr4g095480.1	Cyclase-associated protein; 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.2924.1.A1_at	A	A1TS	POPTR_0004s18160	POPTR_0004s18160 (11)	scaffold_4:18156197-18156393(+) (11)	NA	Q8LBA6	CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1	AT1G68000.1	phosphatidylinositol synthase 1 	LOC_Os02g03110.2	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr4g098430.1	CDP-alcohol phosphatidyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2925.1.S1_at	A	A1TS	POPTR_0013s15610	POPTR_0013s15610 (9)	scaffold_13:15538439-15538736(-) (9)	NA	NA	NA	AT5G01970.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). 	LOC_Os05g25070.1	expressed protein	Medtr3g083960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2927.1.A1_at	A	A1TS	POPTR_0006s20870	POPTR_0006s20870 (10)	scaffold_6:19919899-19920268(+) (10)	NA	O73787	Gamma-tubulin complex component 3 homolog	AT5G06680.1	spindle pole body component 98 	LOC_Os09g27370.2	"Spc97 / Spc98 family protein, putative, expressed"	Medtr7g112250.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
Ptp.2927.2.S1_at	A	A1TS	POPTR_0006s20870	POPTR_0006s20870 (10)	scaffold_6:19918824-19919318(+) (10)	POPTR_0016s05990 (6)	O73787	Gamma-tubulin complex component 3 homolog	AT5G06680.1	spindle pole body component 98 	LOC_Os09g27370.2	"Spc97 / Spc98 family protein, putative, expressed"	Medtr7g112250.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
Ptp.2928.1.A1_at	A	A1TS	POPTR_0004s07810	POPTR_0004s07810 (10)	scaffold_4:6408676-6408959(+) (10)	NA	Q20EV4	Putative septum site-determining protein minD	AT5G24020.1	septum site-determining protein (MIND) 	LOC_Os06g01690.1	"septum site-determining protein minD, putative, expressed"	Medtr4g092230.1	"Septum site-determining protein minD, putative "	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
Ptp.2932.1.S1_at	A	A1TS	POPTR_0016s02000	POPTR_0016s02000 (11)	scaffold_16:928632-929299(+) (11)	NA	Q53196	Uncharacterized aminotransferase y4uB	AT3G22200.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g10510.1	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2933.1.A1_at	A	A1TS	POPTR_0013s07500	POPTR_0013s07500 (10)	scaffold_13:6292839-6293589(+) (10)	NA	NA	NA	AT3G13960.1	growth-regulating factor 5 	LOC_Os04g51190.2	"growth-regulating factor, putative, expressed"	Medtr5g027250.1	QLQ 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
Ptp.2937.1.S1_s_at	A	A1TS	POPTR_0001s35090	POPTR_0001s35090 (10)	scaffold_1:33369569-33370796(+) (10)	NA	Q9FNE2	Glutaredoxin-C2	AT5G40370.1	Glutaredoxin family protein 	LOC_Os04g42930.1	"OsGrx_C2.2 - glutaredoxin subgroup I, expressed"	Medtr3g114210.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.2942.1.A1_at	A	A1TS	POPTR_0014s13090	POPTR_0014s13090 (11)	scaffold_14:9626315-9626851(-) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT4G03100.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g34840.1	"rhoGAP domain containing protein, expressed"	AC235488_25.1	PAK-box/P21-Rho-binding; RhoGAP AC235488.1 117094-119868 F EGN_Mt090430 200	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.2944.1.A1_at	A	A1TS	POPTR_0007s13080	POPTR_0007s13080 (11)	scaffold_7:13251083-13251505(-) (11)	NA	NA	NA	AT2G18245.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g04110.1	expressed protein	Medtr5g020580.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2947.1.S1_at	A	A1MS	POPTR_0011s01530	POPTR_0011s01530 (9)	scaffold_11:1066237-1068053(-) (9)	NA	O95822	"Malonyl-CoA decarboxylase, mitochondrial"	AT4G04320.2	malonyl-CoA decarboxylase family protein 	LOC_Os09g23070.1	"malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0050080|malonyl-CoA decarboxylase activity	NA
Ptp.2948.1.S1_at	A	A1TS	POPTR_0001s15490	POPTR_0001s15490 (11)	scaffold_1:12306426-12306619(-) (11)	NA	P46601	Homeobox-leucine zipper protein HAT2	AT5G47370.1	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein 	LOC_Os10g41230.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2949.1.S1_at	A	A1TS	POPTR_0004s03890	POPTR_0004s03890 (10)	scaffold_4:2761112-2761719(+) (10)	NA	NA	NA	AT1G61065.1	Protein of unknown function (DUF1218) 	LOC_Os04g58160.3	"fiber protein Fb34, putative, expressed"	AC233672_3.1	Protein of unknown function DUF1218 AC233672.2 10435-11337 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2950.1.A1_at	A	A1TS	POPTR_0017s12970	POPTR_0017s12970 (11)	scaffold_17:13149217-13149941(+) (11)	NA	NA	NA	AT3G02120.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	AC231342_22.1	hypothetical protein AC231342.3 103028-102034 I EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2955.1.A1_at	A	A1TS	POPTR_0008s04480	POPTR_0008s04480 (10)	scaffold_8:2526057-2526791(-) (10)	NA	NA	NA	AT5G13610.1	Protein of unknown function (DUF155) 	LOC_Os07g49410.1	"uncharacterized ACR, YagE family COG1723 containing protein, expressed"	Medtr5g046070.1	Protein of unknown function DUF155 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2956.1.A1_at	A	A1TS	POPTR_0004s07950	POPTR_0004s07950 (11)	scaffold_4:6516490-6516833(-) (11)	NA	Q6NQJ8	Protein SET DOMAIN GROUP 40	AT5G17240.1	SET domain group 40 	LOC_Os07g28840.1	"SET domain containing protein, expressed"	Medtr5g084550.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2956.2.S1_at	A	A1TS	POPTR_0004s07950	POPTR_0004s07950 (9)	scaffold_4:6517407-6518856(-) (11)	NA	Q6NQJ8	Protein SET DOMAIN GROUP 40	AT5G17240.1	SET domain group 40 	LOC_Os07g28840.1	"SET domain containing protein, expressed"	Medtr5g084550.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2957.1.S1_at	A	A1TS	POPTR_0002s11900	POPTR_0002s11900 (9)	scaffold_2:8822622-8823115(+) (9)	NA	NA	NA	AT1G59590.1	ZCF37 	LOC_Os03g31740.1	"ZCF37, putative, expressed"	Medtr1g023050.1	"ZCF37, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2960.1.S1_at	A	A1TS	POPTR_0002s09010	POPTR_0002s09010 (11)	scaffold_2:6383077-6383291(+) (11)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0008270|zinc ion binding"	GO:0005634|nucleus
Ptp.2961.1.S1_at	A	A1TS	POPTR_0008s15460	POPTR_0008s15460 (11)	scaffold_8:10290563-10291071(+) (11)	NA	O34569	Uncharacterized N-acetyltransferase yoaA	AT3G22560.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g46250.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g140270.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.2962.1.A1_a_at	A	A1TS	POPTR_0010s03190	POPTR_0010s03190 (11)	scaffold_10:3902140-3902332(-) (11)	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT5G19070.1	SNARE associated Golgi protein family 	LOC_Os07g46220.1	"SNARE associated Golgi protein, putative, expressed"	Medtr4g033450.1	"UPF0043 membrane protein slr0305, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2962.1.A1_at	A	A1TS	POPTR_0010s03190	POPTR_0010s03190 (11)	scaffold_10:3902082-3904465(-) (11)	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT5G19070.1	SNARE associated Golgi protein family 	LOC_Os07g46220.1	"SNARE associated Golgi protein, putative, expressed"	Medtr4g033450.1	"UPF0043 membrane protein slr0305, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2965.1.A1_at	A	A1TS	POPTR_0012s07720	POPTR_0012s07720 (11)	scaffold_12:8623146-8624853(-) (11)	NA	Q86HG0	Mannose-1-phosphate guanyltransferase alpha	AT1G74910.2	ADP-glucose pyrophosphorylase family protein 	LOC_Os03g11050.1	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr6g009470.1	Bacterial transferase hexapeptide repeat 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.2967.1.S1_s_at	A	A1TS	POPTR_0006s00630	POPTR_0006s00630 (11)	scaffold_6:332652-333302(-) (11)	NA	Q9FIK7	"Probable acetyl-CoA acetyltransferase, cytosolic 2"	AT5G47720.4	Thiolase family protein 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	AC233669_10.1	Thiolase AC233669.2 43191-49625 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.297.1.S1_s_at	A	A2TS	POPTR_0006s27050	POPTR_0018s01730 (11)//POPTR_0006s27050 (11)	scaffold_18:1575000-1575043(-) (11)//scaffold_6:25064794-25064837(-) (11)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os06g40450.3	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2971.1.S1_at	A	A1TS	POPTR_0013s11890	POPTR_0013s11890 (9)	scaffold_13:12509838-12512983(+) (10)	NA	O78458	Uncharacterized protein ycf37	AT1G22700.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g32300.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2972.1.S1_at	A	A1TS	POPTR_0006s24630	POPTR_0006s24630 (11)	scaffold_6:23214860-23214942(-) (11)	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.2	calcineurin B-like protein 10 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr1g020570.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2972.1.S1_s_at	A	A1TS	POPTR_0006s24630	POPTR_0006s24630 (11)	scaffold_6:23212988-23214850(-) (11)	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.2	calcineurin B-like protein 10 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr1g020570.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2975.1.S1_at	A	A1TS	POPTR_0012s11040	POPTR_0012s11040 (10)	scaffold_12:11660388-11660660(-) (10)	NA	Q9C1W5	Mitochondrial import inner membrane translocase subunit tim16	AT3G59280.1	"Protein Transporter, Pam16 "	LOC_Os10g33910.1	"mitochondrial import inner membrane translocase subunit Tim16, putative, expressed"	Medtr1g124900.1	Protein of unknown function UPF0108 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2976.1.S1_at	A	A1TS	POPTR_0008s12920	POPTR_0008s12920 (11)	scaffold_8:8418222-8418292(+) (11)	NA	Q54R62	Uridine-cytidine kinase C	AT2G01460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g21110.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.2977.1.A1_at	A	A1TS	POPTR_0005s07150	POPTR_0005s07150 (10)	scaffold_5:4811464-4811911(+) (10)	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2985.1.S1_at	A	A1TS	POPTR_0012s09940	POPTR_0012s09940 (11)	scaffold_12:10820336-10820424(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os08g41880.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g109230.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
Ptp.2986.1.S1_at	A	A1TS	POPTR_0019s02680	POPTR_0019s02680 (11)	scaffold_19:2480572-2480794(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2989.1.A1_at	A	A1MS	POPTR_0003s18380	POPTR_0003s18380 (9)	scaffold_3:17482043-17482473(-) (9)	POPTR_0003s18430 (8)	Q8L831	Nudix hydrolase 3	AT1G79690.1	nudix hydrolase homolog 3 	LOC_Os02g55030.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
Ptp.299.1.A1_s_at	A	A1TS	POPTR_0012s12870	POPTR_0012s12870 (11)	scaffold_12:13248018-13248189(-) (11)	NA	A9IVX6	30S ribosomal protein S9	AT3G49080.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os07g46440.1	"ribosomal protein, putative, expressed"	Medtr1g025880.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2991.1.A1_s_at	A	A1TS	POPTR_0007s06650	POPTR_0007s06650 (11)	scaffold_7:5049313-5051383(+) (11)	NA	Q5ZID2	Programmed cell death protein 2-like	AT5G64830.1	programmed cell death 2 C-terminal domain-containing protein 	LOC_Os04g54820.1	"programmed cell death 2 C-terminal domain-containing protein, putative, expressed"	Medtr3g144680.1	"Programmed cell death protein 2, C-terminal "	NA	NA	GO:0005737|cytoplasm
Ptp.2995.1.S1_s_at	A	A1TS	POPTR_0014s07830	POPTR_0014s07830 (11)	scaffold_14:5840480-5841297(-) (11)	NA	NA	NA	AT1G01730.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g085210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2996.1.S1_at	A	A1TA	POPTR_0015s14290	POPTR_0015s14290 (9)	scaffold_15:13955759-13956201(+) (11)	NA	NA	NA	AT5G51680.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2996.2.A1_at	A	A1TS	POPTR_0015s14290	POPTR_0015s14290 (11)	scaffold_15:13955949-13956764(-) (11)	NA	NA	NA	AT5G51680.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3.1.S1_at	A	A1TS	POPTR_0005s20030	POPTR_0005s20030 (11)	scaffold_5:19044352-19045610(-) (11)	POPTR_0002s08420 (6)	Q9STN5	"Uncharacterized protein At4g08330, chloroplastic"	AT4G08330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g39060.1	expressed protein	Medtr1g037140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.30.2.A1_s_at	A	A2TS	POPTR_0017s02120	POPTR_0017s02120 (11)//POPTR_0017s02140 (11)	scaffold_17:1548074-1548216(+) (11)//scaffold_17:1566886-1567028(+) (11)	NA	A4IGK4	RNA-binding protein 5	AT3G54230.1	suppressor of abi3-5 	LOC_Os02g07070.1	"RNA recognition motif family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3000.1.S1_at	A	A1TS	POPTR_0017s05790	POPTR_0017s05790 (10)	scaffold_17:4522971-4524325(+) (10)	NA	A7SXZ6	Probable O-sialoglycoprotein endopeptidase	AT4G22720.2	Actin-like ATPase superfamily protein 	LOC_Os05g10630.1	"O-sialoglycoprotein endopeptidase, putative, expressed"	Medtr4g025830.1	"Peptidase M22, glycoprotease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.3001.2.A1_s_at	A	A1TS	POPTR_0002s22440	POPTR_0002s22440 (11)	scaffold_2:19169414-19169910(-) (11)	NA	Q8CFY5	"Protoheme IX farnesyltransferase, mitochondrial"	AT2G44520.1	cytochrome c oxidase 10 	LOC_Os01g34390.1	"prenyltransferase, putative, expressed"	Medtr1g146440.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
Ptp.3007.1.A1_s_at	A	A1TS	POPTR_0002s06770	POPTR_0002s06770 (11)	scaffold_2:4544586-4545923(-) (11)	NA	Q54IL5	UDP-sugar-dependent glycosyltransferase 52	AT1G43620.3	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64750.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr1g125050.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.3011.1.A1_at	A	A1TS	POPTR_0015s13920	POPTR_0015s13920 (11)	scaffold_15:13687241-13688157(+) (11)	NA	Q9FJ82	"Putative dihydrodipicolinate reductase 3, chloroplastic"	AT5G52100.1	"Dihydrodipicolinate reductase, bacterial/plant "	LOC_Os03g02690.3	"dihydrodipicolinate reductase, putative, expressed"	Medtr1g129340.1	Dihydrodipicolinate reductase 	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009089|lysine biosynthetic process via diaminopimelate||GO:0044281|small molecule metabolic process	GO:0008839|dihydrodipicolinate reductase activity	NA
Ptp.3014.1.A1_s_at	A	A1TS	POPTR_0002s16060	POPTR_0002s16060 (11)	scaffold_2:11957917-11958280(+) (11)	NA	NA	NA	AT4G00500.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.3017.1.S1_at	A	A1TS	POPTR_0018s09240	POPTR_0018s09240 (10)	scaffold_18:10102778-10103216(+) (10)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G19670.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	AC235664_16.1	Exostosin-like AC235664.1 66545-63524 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
Ptp.3020.1.S1_s_at	A	A1TS	POPTR_0002s26640	POPTR_0002s26640 (11)	scaffold_2:23528578-23529451(+) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3021.1.S1_at	A	A1TS	POPTR_0004s22140	POPTR_0004s22140 (9)	scaffold_4:21092010-21092522(-) (9)	NA	Q6DBP8	GATA transcription factor 11	AT1G08010.2	GATA transcription factor 11 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr2g110110.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.3021.2.S1_at	A	A1TS	POPTR_0004s22150	POPTR_0004s22150 (9)	scaffold_4:21094406-21094917(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3022.1.A1_s_at	A	A1TS	POPTR_0007s14590	POPTR_0007s14590 (11)	scaffold_7:14345492-14345708(-) (11)	POPTR_0005s19080 (6)	P46604	Homeobox-leucine zipper protein HAT22	AT4G37790.1	Homeobox-leucine zipper protein family 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g015030.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.3022.2.S1_s_at	A	A1TS	POPTR_0002s24320	POPTR_0002s24320 (11)	scaffold_2:21721334-21722101(+) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr7g064530.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3022.3.A1_at	A	A1MS	POPTR_0007s14590	POPTR_0007s14590 (11)	scaffold_7:14345730-14345800(-) (11)	NA	P46604	Homeobox-leucine zipper protein HAT22	AT4G37790.1	Homeobox-leucine zipper protein family 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g015030.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.3029.1.S1_a_at	A	A1MS	POPTR_0017s04920	POPTR_0017s04920 (11)	scaffold_17:3779979-3780251(-) (11)	NA	NA	NA	AT5G62270.1	BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g58750.1	expressed protein	Medtr4g089720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3030.1.S1_s_at	A	A1TS	POPTR_0010s18120	POPTR_0010s18120 (11)	scaffold_10:16484530-16485346(+) (11)	NA	Q9SAK4	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.3031.1.S1_at	A	A1TS	POPTR_0001s40180	POPTR_0001s40180 (11)	scaffold_1:39518864-39519266(-) (11)	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78860.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23720.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
Ptp.3032.1.S1_s_at	A	A2TS	POPTR_0014s02560	POPTR_0014s02560 (11)//POPTR_0014s02570 (11)	scaffold_14:2141416-2141869(-) (11)//scaffold_14:2144313-2144766(+) (11)	POPTR_1203s00200 (6)	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G42830.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g01350.1	"transferase family protein, putative, expressed"	Medtr3g147460.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.3033.1.A1_s_at	A	A1TS	POPTR_0004s11170	POPTR_0004s11170 (10)	scaffold_4:9759559-9759865(+) (10)	NA	Q9SN86	"Malate dehydrogenase, chloroplastic"	AT3G47520.1	malate dehydrogenase 	LOC_Os08g33720.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.3034.1.A1_at	A	A1TS	POPTR_0010s08770	POPTR_0010s08770 (9)	scaffold_10:9612716-9613191(-) (9)	NA	Q6YYA3	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT3G23070.1	CRM family member 3A 	LOC_Os11g37990.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr1g089760.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
Ptp.3035.1.S1_s_at	A	A1TS	POPTR_0018s02830	POPTR_0018s02830 (11)	scaffold_18:2497118-2499072(-) (11)	NA	NA	NA	AT2G24970.1	unknown protein; Has 33 Blast hits to 33 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os01g56090.1	expressed protein	Medtr1g016540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3036.1.A1_at	A	A1TS	POPTR_0018s02390	POPTR_0018s02390 (11)	scaffold_18:2140888-2141714(-) (11)	NA	Q93ZE8	Stromal cell-derived factor 2-like protein	AT2G25110.1	stromal cell-derived factor 2-like protein precursor 	LOC_Os08g17680.1	"stromal cell-derived factor 2-like protein precursor, putative, expressed"	Medtr3g138150.1	MIR 	NA	NA	GO:0016020|membrane
Ptp.3037.1.A1_at	A	A1TS	POPTR_0003s01790	POPTR_0003s01790 (10)	scaffold_3:1663896-1664902(+) (11)	NA	NA	NA	AT5G64160.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g51700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3038.1.A1_at	A	A1TS	POPTR_0004s08030	POPTR_0004s08030 (9)	scaffold_4:6563328-6563736(-) (10)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G65880.1	benzoyloxyglucosinolate 1 	LOC_Os09g38350.1	"AMP-binding domain containing protein, expressed"	Medtr3g086630.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3039.1.S1_s_at	A	A1TS	POPTR_0019s07160	POPTR_0019s07160 (11)	scaffold_19:7885531-7885794(-) (11)	NA	Q84Y01	Inositol-tetrakisphosphate 1-kinase 1	AT5G16760.1	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os10g42550.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
Ptp.3041.1.S1_at	A	A1TS	POPTR_0249s00200	POPTR_0249s00200 (9)	scaffold_249:19348-20046(+) (9)	POPTR_0004s03470 (8)	Q9C8H0	ABC transporter C family member 12	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.3041.2.S1_at	A	A2TS	POPTR_0004s03470	POPTR_0249s00200 (11)//POPTR_0004s03470 (11)	scaffold_249:17819-19143(+) (11)//scaffold_4:2386499-2387823(-) (11)	NA	Q42093	ABC transporter C family member 2	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.3043.1.S1_s_at	A	A1TS	POPTR_0001s07400	POPTR_0001s07400 (11)	scaffold_1:5569711-5570058(-) (11)	NA	O24145	4-coumarate--CoA ligase 1	AT3G21240.1	4-coumarate:CoA ligase 2 	LOC_Os02g08100.1	"AMP-binding domain containing protein, expressed"	Medtr4g023340.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3044.1.S1_s_at	A	A1TS	POPTR_0017s04710	POPTR_0017s04710 (11)	scaffold_17:3612748-3613147(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3045.1.S1_at	A	A1TS	POPTR_0004s19960	POPTR_0004s19960 (11)	scaffold_4:19616949-19617106(+) (11)	NA	Q9SGD6	"Arogenate dehydratase/prephenate dehydratase 6, chloroplastic"	AT1G08250.1	arogenate dehydratase 6 	LOC_Os04g33390.1	"prephenate dehydratase domain containing protein, expressed"	Medtr4g073340.1	Prephenate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process	GO:0004664|prephenate dehydratase activity	NA
Ptp.3045.1.S1_s_at	A	A1TS	POPTR_0004s19960	POPTR_0004s19960 (11)	scaffold_4:19617202-19617498(+) (11)	NA	Q9SGD6	"Arogenate dehydratase/prephenate dehydratase 6, chloroplastic"	AT1G08250.1	arogenate dehydratase 6 	LOC_Os04g33390.1	"prephenate dehydratase domain containing protein, expressed"	Medtr4g073340.1	Prephenate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process	GO:0004664|prephenate dehydratase activity	NA
Ptp.3046.1.S1_at	A	A1TS	POPTR_0002s15840	POPTR_0002s15840 (9)	scaffold_2:11803790-11804057(+) (9)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034860.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3046.2.S1_a_at	A	A1TS	POPTR_0002s15840	POPTR_0002s15840 (11)	scaffold_2:11800727-11800868(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034860.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3047.1.S1_at	A	A1TS	POPTR_0005s08010	POPTR_0005s08010 (11)	scaffold_5:5504937-5506265(-) (11)	NA	NA	NA	AT5G10150.1	Domain of unknown function (DUF966) 	LOC_Os03g09200.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g140340.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3049.1.S1_x_at	A	A1TS	POPTR_0006s13310	POPTR_0006s13310 (11)	scaffold_6:10534734-10534946(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.3050.1.S1_s_at	A	A1TS	POPTR_0014s11030	POPTR_0014s11030 (11)	scaffold_14:8224960-8225696(+) (11)	NA	Q8LC45	Probable xyloglucan endotransglucosylase/hydrolase protein 33	AT1G10550.1	xyloglucan:xyloglucosyl transferase 33 	LOC_Os10g02770.1	"glycosyl hydrolases family 16, putative, expressed"	CU633465_9.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal CU633465.7 82577-85450 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.3052.1.S1_s_at	A	A1TS	POPTR_0002s16740	POPTR_0002s16740 (11)	scaffold_2:12502963-12503305(-) (11)	NA	A4IFP3	Fatty acid desaturase 3	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	AC146568_19.1	"Zinc finger, C2H2-type; Fatty acid desaturase/sphingolipid desaturase AC146568.11 95455-93352 E EGN_Mt090430 200"	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0016491|oxidoreductase activity	NA
Ptp.3053.1.A1_s_at	A	A1TS	POPTR_0003s11350	POPTR_0003s11350 (10)	scaffold_3:12184267-12184356(+) (10)	NA	Q93YR3	FAM10 family protein At4g22670	AT4G22670.1	HSP70-interacting protein 1 	LOC_Os02g01030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3055.1.S1_s_at	A	A1TS	POPTR_0015s05370	POPTR_0015s05370 (11)	scaffold_15:5735896-5736422(+) (11)	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr6g080390.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
Ptp.3059.1.A1_s_at	A	A1TS	POPTR_0015s08900	POPTR_0015s08900 (11)	scaffold_15:10255220-10255487(-) (11)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.3059.2.A1_at	A	A1TS	POPTR_0015s08900	POPTR_0015s08900 (9)	scaffold_15:10255195-10255227(-) (9)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.3060.1.S1_at	A	A1TS	POPTR_0009s09040	POPTR_0009s09040 (11)	scaffold_9:8122814-8123175(-) (11)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.3061.1.S1_s_at	A	A1TS	POPTR_0018s04850	POPTR_0018s04850 (11)	scaffold_18:4230830-4234097(-) (11)	NA	Q5XD45	Putative hydrolase M6_Spy0533	AT2G25870.1	haloacid dehalogenase-like hydrolase family protein 	LOC_Os01g53720.2	expressed protein	Medtr1g008360.1	"Protein of unknown function UPF0054; HAD-superfamily hydrolase subfamily IIB; Zinc finger, C2H2-type "	GO:0008152|metabolic process	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.3062.1.S1_s_at	A	A1TS	POPTR_0008s02580	POPTR_0008s02580 (11)	scaffold_8:1273955-1273995(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT5G03680.1	Duplicated homeodomain-like superfamily protein 	LOC_Os10g37240.4	expressed protein	Medtr1g116980.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3064.1.S1_s_at	A	A1TS	POPTR_0008s16500	POPTR_0008s16500 (11)	scaffold_8:11077739-11077795(-) (11)	NA	NA	NA	AT1G04340.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3065.1.S1_s_at	A	A1TS	POPTR_0001s20740	POPTR_0001s20740 (11)	scaffold_1:18835393-18839630(-) (11)	NA	NA	NA	AT1G55160.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g51540.1	expressed protein	AC202568_8.1	Ras GTPase; Calcium-binding EF-hand AC202568.9 36216-39258 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3066.1.S1_s_at	A	A1TS	POPTR_0009s17030	POPTR_0009s17030 (11)	scaffold_9:12832705-12833400(-) (11)	NA	Q99JW2	Aminoacylase-1	AT4G38220.1	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046680.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.3067.1.S1_s_at	A	A1TS	POPTR_0003s04010	POPTR_0003s04010 (11)	scaffold_3:4629840-4630614(-) (11)	NA	O04373	IAA-amino acid hydrolase ILR1-like 4	AT1G51760.1	peptidase M20/M25/M40 family protein 	LOC_Os01g37960.1	"hydrolase, putative, expressed"	Medtr2g121800.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.3068.1.S1_at	A	A1TS	POPTR_0006s12330	POPTR_0006s12330 (11)	scaffold_6:9490700-9491607(-) (11)	NA	O95271	Tankyrase-1	AT3G09890.1	Ankyrin repeat family protein 	LOC_Os03g05260.1	"ankyrin repeat domain containing protein, expressed"	Medtr2g055950.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.307.1.S1_s_at	A	A1TS	POPTR_0014s01060	POPTR_0014s01060 (11)	scaffold_14:991019-991564(-) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT2G22620.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127450.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3071.1.S1_s_at	A	A1TS	POPTR_0002s21700	POPTR_0002s21700 (11)	scaffold_2:18254623-18255488(+) (11)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3072.1.S1_s_at	A	A1TS	POPTR_0006s09130	POPTR_0006s09130 (11)	scaffold_6:6751362-6752150(+) (11)	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os08g13930.2	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.3073.1.S1_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22927113-22927475(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3073.2.S1_a_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22928269-22928492(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3074.1.S1_at	A	A1TS	POPTR_0016s04450	POPTR_0016s04450 (11)	scaffold_16:2612335-2613279(-) (11)	NA	NA	NA	AT2G42080.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g28800.1	"heat shock protein DnaJ, putative"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3076.1.A1_s_at	A	A1TS	POPTR_0019s02670	POPTR_0019s02670 (11)	scaffold_19:2464944-2467055(-) (11)	NA	NA	NA	AT2G18465.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g59060.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3076.2.S1_s_at	A	A1TS	POPTR_0019s02670	POPTR_0019s02670 (11)	scaffold_19:2468043-2469739(-) (11)	NA	NA	NA	AT2G18465.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g59060.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3077.1.A1_s_at	A	A1TS	POPTR_0006s14340	POPTR_0006s14340 (11)	scaffold_6:11665582-11666918(-) (11)	NA	O65351	Subtilisin-like protease	AT2G05920.1	Subtilase family protein 	LOC_Os09g26920.1	"OsSub57 - Putative Subtilisin homologue, expressed"	Medtr2g049250.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.3078.1.S1_at	A	A1TS	POPTR_0015s07570	POPTR_0015s07570 (11)	scaffold_15:8850153-8850642(-) (11)	NA	Q8LGU7	Nuclear ribonuclease Z	AT1G74700.1	tRNAse Z1 	LOC_Os02g12290.1	"nuclear ribonuclease Z, putative"	Medtr5g092020.1	"Nuclear ribonuclease Z, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3079.1.S1_at	A	A1TS	POPTR_0006s20140	POPTR_0006s20140 (9)	scaffold_6:19198314-19200056(-) (9)	NA	Q54YG5	Trafficking protein particle complex subunit 5	AT5G58030.1	Transport protein particle (TRAPP) component 	LOC_Os01g51220.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr3g093070.1	"Transport protein particle (TRAPP) component, Bet3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.308.1.A1_s_at	A	A1TS	POPTR_0015s12070	POPTR_0015s12070 (11)	scaffold_15:12485096-12485865(+) (11)	NA	P29402	Calnexin homolog 1	AT5G61790.1	calnexin 1 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr3g151490.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.3080.2.S1_at	A	A1MS	POPTR_0010s14810	POPTR_0010s14810 (11)	scaffold_10:14286980-14287170(+) (11)	NA	Q9JHB5	Translin-associated protein X	AT2G03780.1	Translin family protein 	LOC_Os01g16100.1	"translin, putative, expressed"	Medtr8g077500.1	Translin 	NA	GO:0043565|sequence-specific DNA binding	NA
Ptp.3081.1.S1_s_at	A	A1TS	POPTR_0016s06480	POPTR_0016s06480 (11)	scaffold_16:4346079-4349328(+) (11)	NA	Q94AX4	"D-lactate dehydrogenase [cytochrome], mitochondrial"	AT5G06580.1	FAD-linked oxidases family protein 	LOC_Os07g06890.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.3082.1.S1_s_at	A	A1TS	POPTR_0010s17810	POPTR_0010s17810 (11)	scaffold_10:16263177-16263682(+) (11)	NA	A2Z9A6	UPF0496 protein 4	AT1G01550.2	Protein of unknown function (DUF793) 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3083.1.S1_s_at	A	A1TS	POPTR_0009s01730	POPTR_0009s01730 (11)	scaffold_9:2256596-2256688(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g47780.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3084.1.S1_s_at	A	A1TS	POPTR_0010s11840	POPTR_0010s11840 (11)	scaffold_10:11979570-11979796(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3085.1.S1_at	A	A1TS	POPTR_0012s11290	POPTR_0012s11290 (11)	scaffold_12:11792650-11792884(+) (11)	NA	P29402	Calnexin homolog 1	AT5G61790.1	calnexin 1 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr3g151490.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.3086.1.S1_s_at	A	A2TS	POPTR_0002s13630	POPTR_0002s13630 (11)//POPTR_0014s04320 (11)	scaffold_14:3369033-3370744(-) (11)//scaffold_2:10099362-10100827(-) (11)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.3087.1.S1_at	A	A1TS	POPTR_0006s19580	POPTR_0006s19580 (11)	scaffold_6:18623198-18623407(-) (11)	NA	Q9SWW6	Cellulose synthase A catalytic subunit 7 [UDP-forming]	AT5G17420.1	Cellulose synthase family protein 	LOC_Os09g25490.1	"CESA9 - cellulose synthase, expressed"	Medtr8g145000.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.3088.1.S1_at	A	A1TS	POPTR_0011s11320	POPTR_0011s11320 (9)	scaffold_11:14047678-14049343(+) (9)	NA	Q46948	Protein thiJ	AT1G53280.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os06g34040.1	"DJ-1 family protein, putative, expressed"	Medtr4g129930.1	ThiJ/PfpI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3089.1.S1_at	A	A1TS	POPTR_0019s09690	POPTR_0019s09690 (11)	scaffold_19:11302038-11303529(-) (11)	NA	O59729	Uncharacterized protein slp1	AT1G71360.1	Galactose-binding protein 	LOC_Os01g65520.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr4g032100.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.309.1.A1_s_at	A	A1TS	POPTR_0013s05500	POPTR_0013s05500 (11)	scaffold_13:3932840-3934102(+) (11)	NA	Q552J0	T-complex protein 1 subunit theta	AT3G03960.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g59020.1	"T-complex protein, putative, expressed"	Medtr6g030660.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.3090.1.A1_at	A	A1MS	POPTR_0014s01690	POPTR_0014s01690 (11)	scaffold_14:1581905-1581950(+) (11)	NA	Q37145	"Calcium-transporting ATPase 1, chloroplastic"	AT1G27770.1	autoinhibited Ca2+-ATPase 1 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.3091.1.S1_at	A	A1TS	POPTR_0001s16180	POPTR_0001s16180 (11)	scaffold_1:12999133-13000529(-) (11)	NA	Q9SSB5	26S protease regulatory subunit 7 homolog A	AT1G53750.1	regulatory particle triple-A 1A 	LOC_Os06g09290.1	"26S protease regulatory subunit 7, putative, expressed"	Medtr1g121600.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.3092.1.S1_at	A	A1TS	POPTR_0004s04400	POPTR_0004s04400 (11)	scaffold_4:3147790-3147909(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3092.1.S1_s_at	A	A1TS	POPTR_0004s04400	POPTR_0004s04400 (11)	scaffold_4:3147479-3147752(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3092.2.S1_s_at	A	A2TS	POPTR_0004s04400	POPTR_0004s04400 (11)//POPTR_0011s05280 (11)	scaffold_11:5155570-5155720(-) (11)//scaffold_4:3148655-3148805(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3093.1.A1_at	A	A1TS	POPTR_0010s24400	POPTR_0010s24400 (10)	scaffold_10:20632623-20633277(+) (10)	NA	A0JNC2	R3H domain-containing protein 2	AT3G10770.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr1g117280.1	Single-stranded nucleic acid binding R3H 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3094.1.S1_at	A	A1TS	POPTR_0008s07330	POPTR_0008s07330 (10)	scaffold_8:4487169-4487570(+) (10)	NA	NA	NA	AT2G40320.1	TRICHOME BIREFRINGENCE-LIKE 33 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr5g090760.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3095.1.S1_s_at	A	A1TS	POPTR_0002s24630	POPTR_0002s24630 (11)	scaffold_2:21945568-21946144(-) (11)	NA	Q6PD26	GPI transamidase component PIG-S	AT3G07180.1	GPI transamidase component PIG-S-related 	LOC_Os01g67960.1	"GPI transamidase component PIG-S-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3096.1.A1_s_at	A	A1TS	POPTR_0008s11730	POPTR_0008s11730 (11)	scaffold_8:7505262-7505759(-) (11)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	AC233660_2.1	Armadillo-like helical AC233660.2 13161-17702 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3097.1.S1_s_at	A	A1TS	POPTR_0009s07740	POPTR_0009s07740 (11)	scaffold_9:7198300-7198687(+) (11)	NA	Q68FD5	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os11g01380.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
Ptp.3098.1.S1_at	A	A1TS	POPTR_0008s06920	POPTR_0008s06920 (11)	scaffold_8:4163740-4167425(+) (11)	NA	O81488	PHD finger protein At5g26210	AT5G05610.2	alfin-like 1 	LOC_Os05g07040.1	"PHD finger protein, putative, expressed"	AC235756_22.1	"Zinc finger, FYVE/PHD-type AC235756.1 164740-161152 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.31.2.S1_s_at	A	A1TS	POPTR_0018s04840	POPTR_0018s04840 (11)	scaffold_18:4216403-4216749(+) (11)	NA	Q9LEI8	Profilin-6	AT4G29340.1	profilin 4 	LOC_Os10g17680.1	"profilin domain containing protein, expressed"	Medtr4g160100.1	Plant profilin 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	GO:0015629|actin cytoskeleton
Ptp.3102.1.S1_s_at	A	A1TS	POPTR_0001s13960	POPTR_0001s13960 (11)	scaffold_1:11002218-11002644(+) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3103.1.S1_at	A	A1TS	POPTR_0016s01990	POPTR_0016s01990 (9)	scaffold_16:918491-918967(+) (9)	NA	Q8L5Y5	Probable S-acyltransferase At4g15080	AT4G15080.1	DHHC-type zinc finger family protein 	LOC_Os09g38970.1	"zinc finger family protein, putative, expressed"	Medtr4g103680.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3105.1.S1_s_at	A	A1TS	POPTR_0012s11100	POPTR_0012s11100 (11)	scaffold_12:11686660-11687171(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G61840.1	Exostosin family protein 	LOC_Os01g70200.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.311.1.A1_at	A	A1TS	POPTR_0006s25290	POPTR_0006s25290 (11)	scaffold_6:23698338-23698824(-) (11)	NA	P40235	Casein kinase I homolog hhp1	AT2G25760.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g008170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3110.2.S1_a_at	A	A1TS	POPTR_0008s09930	POPTR_0008s09930 (11)	scaffold_8:6151272-6152102(-) (11)	NA	Q6E2Z6	1-Cys peroxiredoxin	AT1G48130.1	1-cysteine peroxiredoxin 1 	LOC_Os07g44430.1	"peroxiredoxin, putative"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.3111.1.A1_a_at	A	A1TS	POPTR_0001s21870	POPTR_0001s21870 (11)	scaffold_1:20348857-20348996(-) (11)	NA	Q8RY89	Phosphatidylinositol-4-phosphate 5-kinase 8	AT1G60890.2	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os03g49510.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g137550.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
Ptp.3112.1.S1_s_at	A	A1TS	POPTR_0002s16440	POPTR_0002s16440 (11)	scaffold_2:12299769-12300104(-) (11)	NA	Q49YU2	Diacylglycerol kinase	AT2G46090.1	Diacylglycerol kinase family protein 	LOC_Os03g03400.1	"diacylglycerol kinase, putative, expressed"	Medtr7g088910.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.3113.1.S1_at	A	A1TS	POPTR_0016s07280	POPTR_0016s07280 (11)	scaffold_16:5173512-5173675(-) (11)	NA	Q9C5R8	"2-Cys peroxiredoxin BAS1-like, chloroplastic"	AT5G06290.1	2-cysteine peroxiredoxin B 	LOC_Os02g33450.2	"peroxiredoxin, putative, expressed"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.3114.2.S1_s_at	A	A1TS	POPTR_0010s16620	POPTR_0010s16620 (11)	scaffold_10:15520001-15521295(-) (11)	NA	Q6DKC0	Erlin-2-B	AT2G03510.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os03g30790.1	"erlin-2 precursor, putative, expressed"	Medtr4g115350.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3115.1.S1_at	A	A1MS	POPTR_0003s02440	POPTR_0003s02440 (9)	scaffold_3:2525396-2525474(-) (9)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr2g126830.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3115.2.S1_a_at	A	A1TS	POPTR_0003s02440	POPTR_0003s02440 (11)	scaffold_3:2525146-2525304(-) (11)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr2g126830.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3115.2.S1_s_at	A	A1TS	POPTR_0003s02440	POPTR_0003s02440 (11)	scaffold_3:2526605-2527810(-) (11)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr2g126830.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3116.1.S1_at	A	A1TS	POPTR_0014s11480	POPTR_0014s11480 (9)	scaffold_14:8524901-8525225(+) (9)	NA	Q9S834	"ATP-dependent Clp protease proteolytic subunit 5, chloroplastic"	AT1G02560.1	nuclear encoded CLP protease 5 	LOC_Os03g19510.1	"OsClp4 - Putative Clp protease homologue, expressed"	Medtr1g106610.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.3117.1.A1_at	A	A1TS	POPTR_0017s06620	POPTR_0017s06620 (9)	scaffold_17:5029870-5029902(+) (9)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3117.1.A1_s_at	A	A1TS	POPTR_0017s06620	POPTR_0017s06620 (11)	scaffold_17:5030915-5031266(+) (11)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3118.1.S1_s_at	A	A2TS	POPTR_0001s07510	POPTR_0003s18540 (11)//POPTR_0001s07510 (11)	scaffold_1:5643661-5644228(+) (11)//scaffold_3:17585202-17585682(-) (11)	NA	Q84L33	Putative DNA repair protein RAD23-1	AT1G79650.2	Rad23 UV excision repair protein family 	LOC_Os02g08300.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
Ptp.312.1.S1_a_at	A	A1TS	POPTR_0006s15850	POPTR_0006s15850 (11)	scaffold_6:13524987-13525218(+) (11)	NA	Q9FH28	Chaperone protein dnaJ 49	AT3G57340.2	"Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) "	LOC_Os01g37560.3	"chaperone protein dnaJ 49, putative, expressed"	Medtr8g139780.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3120.1.S1_at	A	A1TS	POPTR_0002s01650	POPTR_0002s01650 (11)	scaffold_2:878461-878676(-) (11)	NA	Q96324	Glutathione S-transferase	AT3G03190.1	glutathione S-transferase F11 	LOC_Os03g04260.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3120.1.S1_x_at	A	A1TS	POPTR_0002s01650	POPTR_0002s01650 (11)	scaffold_2:878461-878727(-) (11)	NA	Q96324	Glutathione S-transferase	AT3G03190.1	glutathione S-transferase F11 	LOC_Os03g04260.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3122.1.S1_at	A	A1TS	POPTR_0010s25170	POPTR_0010s25170 (9)	scaffold_10:20983557-20983598(-) (9)	NA	P46302	40S ribosomal protein S28	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3122.1.S1_x_at	A	A1TS	POPTR_0010s25170	POPTR_0010s25170 (9)	scaffold_10:20983451-20984534(-) (9)	NA	P46302	40S ribosomal protein S28	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3125.1.S1_at	A	A1TA	POPTR_0011s04780	POPTR_0011s04780 (9)	scaffold_11:4750874-4752362(-) (9)	NA	P34914	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3125.3.S1_s_at	A	A1TS	POPTR_0011s04780	POPTR_0011s04780 (11)	scaffold_11:4752385-4752780(+) (11)	NA	P34914	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3126.1.S1_s_at	A	A1TS	POPTR_0001s22620	POPTR_0001s22620 (11)	scaffold_1:21514545-21515245(-) (11)	NA	P19950	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os02g06700.1	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.313.1.A1_s_at	A	A1TS	POPTR_0013s10050	POPTR_0013s10050 (11)	scaffold_13:10027610-10028370(-) (11)	NA	P35136	D-3-phosphoglycerate dehydrogenase	AT1G72190.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os07g16040.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr3g013440.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.313.2.S1_s_at	A	A1TS	POPTR_0013s10050	POPTR_0013s10050 (11)	scaffold_13:10032129-10032866(-) (11)	NA	P35136	D-3-phosphoglycerate dehydrogenase	AT1G72190.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os07g16040.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr3g013440.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.313.3.A1_s_at	A	A1TS	POPTR_0013s10050	POPTR_0013s10050 (11)	scaffold_13:10027479-10027541(-) (11)	NA	P35136	D-3-phosphoglycerate dehydrogenase	AT1G72190.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os07g16040.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr3g013440.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.3130.1.S1_s_at	A	A1TS	POPTR_0006s21680	POPTR_0006s21680 (11)	scaffold_1402:5688-5729(-) (11)//scaffold_6:20704360-20704401(+) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr3g114720.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3132.1.S1_s_at	A	A1TS	POPTR_0002s18420	POPTR_0002s18420 (11)	scaffold_2:14353339-14353819(-) (11)	NA	O23680	"Translocase of chloroplast 33, chloroplastic"	AT1G02280.2	translocon at the outer envelope membrane of chloroplasts 33 	LOC_Os03g13730.1	"translocase of chloroplast 34, putative, expressed"	Medtr7g104820.1	Chloroplast protein import component Toc34 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3132.2.S1_s_at	A	A1TS	POPTR_0002s18420	POPTR_0002s18420 (11)	scaffold_2:14357041-14357565(-) (11)	NA	O23680	"Translocase of chloroplast 33, chloroplastic"	AT1G02280.2	translocon at the outer envelope membrane of chloroplasts 33 	LOC_Os03g13730.1	"translocase of chloroplast 34, putative, expressed"	Medtr7g104820.1	Chloroplast protein import component Toc34 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3133.1.S1_s_at	A	A1TS	POPTR_0009s13590	POPTR_0009s13590 (11)	scaffold_9:10793915-10794041(+) (11)	NA	O65351	Subtilisin-like protease	AT4G34980.1	subtilisin-like serine protease 2 	LOC_Os03g13930.1	"OsSub28 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.3135.1.S1_at	A	A1TS	POPTR_0001s47450	POPTR_0001s47450 (10)	scaffold_1:47650766-47651004(-) (10)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.3136.1.S1_at	A	A1TS	POPTR_0014s04880	POPTR_0014s04880 (10)	scaffold_14:3766575-3767245(-) (10)	NA	P39207	Nucleoside diphosphate kinase 1	AT4G09320.1	Nucleoside diphosphate kinase family protein 	LOC_Os10g41410.2	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
Ptp.3138.2.A1_a_at	A	A1TS	POPTR_0009s13580	POPTR_0009s13580 (11)	scaffold_9:10779737-10780056(-) (11)	NA	Q9SBQ8	Kaempferol 3-O-beta-D-galactosyltransferase	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128440.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008152|metabolic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.314.1.A1_at	A	A1TS	POPTR_0018s09570	POPTR_0018s09570 (11)	scaffold_18:10509282-10513455(+) (11)	NA	Q9LVC8	"Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial"	AT5G57300.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g74520.1	"methyltransferase domain containing protein, putative, expressed"	Medtr4g005810.1	UbiE/COQ5 methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.3142.1.A1_at	A	A1TS	POPTR_0002s10430	POPTR_0002s10430 (11)	scaffold_2:7525053-7525782(+) (11)	NA	NA	NA	AT4G24610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). 	LOC_Os02g52280.1	expressed protein	Medtr5g074970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3143.2.S1_a_at	A	A1TS	POPTR_0006s10950	POPTR_0006s10950 (11)	scaffold_6:8321489-8321528(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3143.2.S1_at	A	A1MS	POPTR_0006s10950	POPTR_0006s10950 (11)	scaffold_6:8321143-8321431(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3145.1.S1_s_at	A	A1TA	POPTR_0010s18940	POPTR_0010s18940 (11)	scaffold_10:17025621-17025969(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3147.2.S1_a_at	A	A2TS	POPTR_0014s01860	POPTR_0014s17560 (11)//POPTR_0014s01860 (11)	scaffold_14:1708648-1709219(-) (11)//scaffold_14:13807852-13808426(-) (11)	NA	P33642	Probable D-amino acid oxidase PA4548	AT5G48440.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g33900.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr7g046700.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3148.1.S1_s_at	A	A1MS	POPTR_0014s17010	POPTR_0014s17010 (11)	scaffold_14:13197062-13197459(+) (11)	NA	Q8LPQ9	Flowering time control protein FPA	AT4G12640.1	RNA recognition motif (RRM)-containing protein 	LOC_Os09g12730.2	"RNA recognition motif containing protein, expressed"	Medtr3g111300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.315.1.A1_at	A	A1TS	POPTR_0013s08350	POPTR_0013s08350 (11)	scaffold_13:7434745-7434794(+) (11)	NA	Q9FFE0	Regulator of ribonuclease-like protein 2	AT5G16450.2	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os01g52460.2	"regulator of ribonuclease, putative, expressed"	Medtr7g089680.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3160.1.S1_at	A	A1TS	POPTR_0007s13560	POPTR_0007s13560 (11)	scaffold_7:13607539-13607655(-) (11)	NA	Q9H0R3	Transmembrane protein 222	AT3G51040.3	RTE1-homolog 	LOC_Os03g58520.1	"green ripe-like, putative, expressed"	Medtr5g021070.1	Protein of unknown function DUF778 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3161.1.S1_s_at	A	A1TS	POPTR_0017s12810	POPTR_0017s12810 (11)	scaffold_17:12991782-12992832(+) (11)	NA	Q9LLC1	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic"	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	AC231342_10.1	Biotin-binding site AC231342.3 52802-49143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3162.1.S1_at	A	A1TA	POPTR_0002s17680	POPTR_0002s17680 (10)	scaffold_2:13491963-13492435(+) (10)	NA	P46897	Homeobox-leucine zipper protein ATHB-7	AT2G46680.1	homeobox 7 	LOC_Os09g35910.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g029340.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.3167.1.S1_at	A	A1TS	POPTR_0008s11840	POPTR_0008s11840 (11)	scaffold_8:7580856-7581228(-) (11)	NA	Q84L30	Putative DNA repair protein RAD23-4	AT5G38470.1	Rad23 UV excision repair protein family 	LOC_Os09g24200.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
Ptp.3170.2.A1_at	A	A1TA	POPTR_0002s06280	POPTR_0002s06280 (10)	scaffold_2:4197666-4198191(-) (11)	NA	NA	NA	AT5G36120.1	"cofactor assembly, complex C (B6F) "	LOC_Os01g73540.1	"YGGT family protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
Ptp.3171.1.S1_s_at	A	A1TS	POPTR_0014s12350	POPTR_0014s12350 (11)	scaffold_14:9117894-9119616(+) (11)	NA	NA	NA	AT3G62880.2	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	NA	NA	Medtr1g108360.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.3173.1.S1_s_at	A	A1TS	POPTR_0007s06650	POPTR_0007s06650 (11)	scaffold_7:5047032-5047789(+) (11)	NA	Q5ZID2	Programmed cell death protein 2-like	AT5G64830.1	programmed cell death 2 C-terminal domain-containing protein 	LOC_Os04g54820.1	"programmed cell death 2 C-terminal domain-containing protein, putative, expressed"	Medtr3g144680.1	"Programmed cell death protein 2, C-terminal "	NA	NA	GO:0005737|cytoplasm
Ptp.3178.1.S1_at	A	A1TS	POPTR_0006s16020	POPTR_0006s16020 (9)	scaffold_6:13800782-13801419(+) (9)	NA	Q9FM64	"Pentatricopeptide repeat-containing protein At5g55740, chloroplastic"	AT5G55740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g42280.1	"pentatricopeptide, putative, expressed"	Medtr8g077950.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3179.1.S1_at	A	A1TS	POPTR_0002s07830	POPTR_0002s07830 (10)	scaffold_2:5386262-5387966(+) (10)	POPTR_0002s07850 (7)	Q8DHU4	Protein translocase subunit secA	AT1G21650.2	Preprotein translocase SecA family protein 	LOC_Os11g08980.1	"preprotein translocase secA family protein, putative, expressed"	Medtr1g105810.1	SecA protein 	GO:0017038|protein import	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane
Ptp.3180.1.S1_x_at	A	A1TS	POPTR_0002s09610	POPTR_0002s09610 (11)	scaffold_2:6883468-6884176(-) (11)	NA	Q9SYT0	Annexin D1	AT1G35720.1	annexin 1 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
Ptp.3186.1.S1_a_at	A	A1TS	POPTR_0002s10930	POPTR_0002s10930 (11)	scaffold_2:7984659-7985370(+) (11)	NA	NA	NA	AT2G17280.2	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g121830.1	"phosphoglycerate mutase-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3188.1.S1_s_at	A	A1TS	POPTR_0002s05130	POPTR_0002s05130 (11)	scaffold_2:3329135-3329868(+) (11)	NA	Q9ZQI8	Non-specific lipid-transfer protein-like protein At2g13820	AT3G22600.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g57990.1	"LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g007090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.319.1.A1_at	A	A1TS	POPTR_0018s03440	POPTR_0018s03440 (11)	scaffold_18:3013348-3014374(-) (11)	NA	NA	NA	AT4G31570.1	CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). 	LOC_Os02g05490.1	expressed protein	Medtr1g010620.1	Prefoldin 	GO:0016032|viral reproduction	NA	NA
Ptp.3190.1.S1_s_at	A	A1TS	POPTR_0004s15080	POPTR_0004s15080 (11)	scaffold_4:15753001-15753214(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT3G19130.1	RNA-binding protein 47B 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g129250.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3190.3.A1_at	A	A1TA	POPTR_0004s15080	POPTR_0004s15080 (11)	scaffold_4:15753094-15753394(-) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT3G19130.1	RNA-binding protein 47B 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g129250.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3195.1.S1_s_at	A	A1TS	POPTR_0002s04640	POPTR_0002s04640 (11)	scaffold_2:2900429-2901880(+) (11)	NA	P42390	"Indole-3-glycerol phosphate lyase, chloroplastic"	AT3G54640.1	tryptophan synthase alpha chain 	LOC_Os07g08430.1	"indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006568|tryptophan metabolic process	GO:0004834|tryptophan synthase activity	NA
Ptp.3197.1.S1_at	A	A1TS	POPTR_0001s45530	POPTR_0001s45530 (11)	scaffold_1:46036221-46036991(-) (11)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.320.1.S1_at	A	A1TS	POPTR_0010s15740	POPTR_0010s15740 (9)	scaffold_10:14862852-14863190(+) (9)	NA	P57741	Probable prefoldin subunit 3	AT5G49510.2	prefoldin 3 	LOC_Os12g37590.1	"prefoldin, putative, expressed"	Medtr2g037940.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.3200.1.S1_s_at	A	A1TS	POPTR_0005s11690	POPTR_0005s11690 (11)	scaffold_5:8519270-8520031(-) (11)	NA	Q3TSG4	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3204.1.S1_at	A	A1MS	POPTR_0009s03880	POPTR_0009s03880 (10)	scaffold_9:4445507-4446211(-) (10)	NA	Q8VZI8	"ATP-dependent zinc metalloprotease FTSH 10, mitochondrial"	AT1G07510.1	FTSH protease 10 	LOC_Os05g38400.1	"OsFtsH8  FtsH protease, homologue of AtFtsH3/10, expressed"	Medtr4g084650.1	"AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.3205.1.S1_at	A	A1TS	POPTR_0005s18330	POPTR_0005s18330 (10)	scaffold_5:16476973-16477938(-) (10)	POPTR_0007s10840 (8)	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT5G67130.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os09g02729.1	"phospholipase C, putative, expressed"	Medtr5g016790.1	"Carbohydrate kinase, FGGY; Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.321.1.S1_a_at	A	A1TS	POPTR_0012s10340	POPTR_0012s10340 (11)	scaffold_12:11147956-11148413(+) (11)	NA	Q9FED2	HVA22-like protein e	AT5G50720.1	HVA22 homologue E 	LOC_Os11g30500.1	"HVA22, putative, expressed"	Medtr3g150830.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.321.2.S1_at	A	A1MS	POPTR_0012s10340	POPTR_0012s10340 (11)	scaffold_12:11147591-11148445(+) (11)	NA	Q9FED2	HVA22-like protein e	AT5G50720.1	HVA22 homologue E 	LOC_Os11g30500.1	"HVA22, putative, expressed"	Medtr3g150830.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3210.1.S1_at	A	A1TS	POPTR_0019s08980	POPTR_0019s08980 (11)	scaffold_19:10584604-10585163(+) (11)	NA	Q2V0W1	Pheophorbidase	AT3G10870.1	methyl esterase 17 	LOC_Os12g02500.1	"esterase, putative, expressed"	Medtr5g076890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3212.1.S1_at	A	A1TS	POPTR_0011s00310	POPTR_0011s00310 (11)	scaffold_11:99196-99709(+) (11)	NA	NA	NA	AT4G21215.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr5g005770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3214.1.A1_s_at	A	A1TS	POPTR_0006s28230	POPTR_0006s28230 (11)	scaffold_6:25985731-25986227(-) (11)	NA	Q9SM44	"Monogalactosyldiacylglycerol synthase, chloroplastic"	AT4G31780.2	monogalactosyl diacylglycerol synthase 1 	LOC_Os09g25580.1	"monogalactosyldiacylglycerol synthase, putative, expressed"	AC235758_1.1	"Glycosyltransferase 28, C-terminal; Monogalactosyldiacylglycerol synthase AC235758.1 7116-1932 E EGN_Mt090430 200"	GO:0009247|glycolipid biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.3214.2.S1_s_at	A	A1TS	POPTR_0006s28230	POPTR_0006s28230 (11)	scaffold_6:25989569-25989933(-) (11)	NA	Q9SM44	"Monogalactosyldiacylglycerol synthase, chloroplastic"	AT4G31780.2	monogalactosyl diacylglycerol synthase 1 	LOC_Os09g25580.1	"monogalactosyldiacylglycerol synthase, putative, expressed"	AC235758_1.1	"Glycosyltransferase 28, C-terminal; Monogalactosyldiacylglycerol synthase AC235758.1 7116-1932 E EGN_Mt090430 200"	GO:0009247|glycolipid biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.3215.2.S1_at	A	A1TS	POPTR_0004s01690	POPTR_0004s01690 (11)	scaffold_4:1020046-1021312(-) (11)	NA	O13759	RNA-binding post-transcriptional regulator csx1	AT1G11650.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g37270.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3217.1.A1_at	A	A1TS	POPTR_0001s30350	POPTR_0001s30350 (10)	scaffold_1:28851071-28851557(+) (10)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g39090.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3217.2.S1_at	A	A1TS	POPTR_0001s30350	POPTR_0001s30350 (10)	scaffold_1:28850270-28850597(+) (10)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g39090.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3218.1.S1_at	A	A1TS	POPTR_0014s04920	POPTR_0014s04920 (9)	scaffold_14:3810930-3811309(+) (9)	NA	Q8LPS6	Pentatricopeptide repeat-containing protein At1g02150	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g46010.1	"PPR repeat domain containing protein, putative, expressed"	AC202489_31.1	Pentatricopeptide repeat AC202489.10 131297-133733 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3221.1.S1_s_at	A	A1TS	POPTR_0019s09670	POPTR_0019s09670 (11)	scaffold_19:11271242-11271319(-) (11)	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.3225.1.S1_s_at	A	A1TS	POPTR_0008s03540	POPTR_0008s03540 (11)	scaffold_8:1893203-1894691(-) (11)	NA	P35159	Ribosomal large subunit pseudouridine synthase B	AT2G39140.1	pseudouridine synthase family protein 	LOC_Os03g05806.1	"pseudouridine synthase family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.3227.1.S1_s_at	A	A1TS	POPTR_0011s14270	POPTR_0011s14270 (11)	scaffold_11:16733055-16735347(+) (11)	NA	Q147X3	"N-alpha-acetyltransferase 30, NatC catalytic subunit"	AT2G38130.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os11g32280.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g097190.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.3228.1.A1_a_at	A	A1TS	POPTR_0007s11470	POPTR_0007s11470 (11)	scaffold_7:11837295-11837402(-) (11)	NA	Q9FGT7	Two-component response regulator ARR18	AT4G37180.1	Homeodomain-like superfamily protein 	LOC_Os03g55590.1	"MYB family transcription factor, putative, expressed"	Medtr5g017970.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.323.1.S1_s_at	A	A3TS	POPTR_0005s11570	POPTR_0005s11600 (11)//POPTR_0005s11570 (11)//POPTR_0005s11610 (11)	scaffold_5:8399496-8400129(-) (11)//scaffold_5:8410000-8410624(-) (11)//scaffold_5:8417845-8418468(-) (11)	POPTR_1289s00200 (6)	Q07353	"Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)"	AT3G51240.2	flavanone 3-hydroxylase 	LOC_Os04g56700.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr8g089960.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3232.1.S1_at	A	A1TS	POPTR_0007s14760	POPTR_0007s14760 (10)	scaffold_7:14517934-14519637(+) (10)	NA	NA	NA	AT5G65880.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr8g101930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3235.1.S1_at	A	A1TS	POPTR_0001s39580	POPTR_0001s39580 (9)	scaffold_1:38784922-38785273(-) (9)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3238.1.S1_s_at	A	A1TS	POPTR_0007s15300	POPTR_0007s15300 (11)	scaffold_7:14881064-14881413(+) (11)	NA	NA	NA	AT3G19990.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). "	LOC_Os02g58150.1	expressed protein	Medtr1g047000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3242.1.S1_s_at	A	A1TS	POPTR_0004s05770	POPTR_0004s05770 (11)	scaffold_4:4529402-4530522(+) (11)	NA	Q39011	Shaggy-related protein kinase eta	AT4G18710.1	Protein kinase superfamily protein 	LOC_Os05g11730.1	"CGMC_GSK.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g097890.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3244.1.S1_at	A	A1TS	POPTR_0006s04290	POPTR_0006s04290 (9)	scaffold_6:2933450-2933486(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3245.1.S1_s_at	A	A1TS	POPTR_0017s06840	POPTR_0017s06840 (11)	scaffold_17:5221289-5221854(+) (11)	NA	O64407	Beta-amylase	AT4G15210.1	beta-amylase 5 	LOC_Os07g35940.1	"beta-amylase, putative"	Medtr2g103430.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.3246.1.S1_x_at	A	A1TS	POPTR_0005s26930	POPTR_0005s26930 (11)	scaffold_5:24773907-24774072(-) (11)	NA	P42759	Dehydrin ERD10	AT1G20450.1	Dehydrin family protein 	NA	NA	Medtr3g162880.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
Ptp.325.1.A1_s_at	A	A1TS	POPTR_0002s17570	POPTR_0002s17570 (10)	scaffold_2:13358744-13359160(+) (10)	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3250.1.S1_s_at	A	A1TS	POPTR_0016s05520	POPTR_0016s05520 (11)	scaffold_16:3457642-3458014(+) (11)	NA	Q941L0	Cellulose synthase A catalytic subunit 3 [UDP-forming]	AT5G05170.1	Cellulose synthase family protein 	LOC_Os07g10770.1	"CESA8 - cellulose synthase, expressed"	Medtr3g029130.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.3252.1.S1_s_at	A	A1TS	POPTR_0012s10140	POPTR_0012s10140 (11)	scaffold_12:10960609-10962332(-) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT5G50530.1	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os01g69900.1	"CBS domain-containing protein, putative, expressed"	Medtr3g150700.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3254.1.S1_at	A	A1TS	POPTR_0006s21210	POPTR_0006s21210 (11)	scaffold_6:20307002-20307573(+) (11)	NA	P51427	40S ribosomal protein S5-2	AT3G11940.2	ribosomal protein 5A 	LOC_Os11g29190.2	"40S ribosomal protein S5, putative, expressed"	AC235488_12.1	Ribosomal protein S7 AC235488.1 52998-48408 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3258.1.S1_at	A	A1TS	POPTR_0008s07870	POPTR_0008s07870 (9)	scaffold_8:4834038-4834499(-) (9)	NA	Q84W55	"Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3"	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3259.2.S1_a_at	A	A1TS	POPTR_0006s26180	POPTR_0006s26180 (11)	scaffold_6:24453418-24454491(-) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G25560.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os01g52110.5	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr3g135900.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3259.3.S1_at	A	A1TA	POPTR_0006s26185	POPTR_0006s26185 (11)	scaffold_6:24456436-24456806(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3262.1.S1_at	A	A1TS	POPTR_0015s10740	POPTR_0015s10740 (9)	scaffold_15:11570788-11571798(+) (9)	NA	Q5ZI43	Snurportin-1	AT4G24880.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g01130.1	"snurportin-1, putative, expressed"	Medtr3g117620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3269.1.S1_s_at	A	A1TS	POPTR_0005s02030	POPTR_0005s02030 (11)	scaffold_5:1325957-1326139(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
Ptp.327.1.S1_at	A	A1TS	POPTR_0001s10940	POPTR_0001s10940 (9)	scaffold_1:8485237-8486898(+) (9)	NA	Q9SGW3	26S proteasome non-ATPase regulatory subunit RPN12A	AT1G64520.1	regulatory particle non-ATPase 12A 	LOC_Os07g25420.1	"26S proteasome non-ATPase regulatory subunit 8, putative, expressed"	Medtr1g020820.1	SAC3/GANP; 26S proteasome non-ATPase regulatory subunit Nin1/mts3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3277.1.S1_s_at	A	A2TS	POPTR_0007s05890	POPTR_0007s05910 (11)//POPTR_0007s05890 (11)	scaffold_7:4055868-4056412(+) (11)//scaffold_7:4067154-4067699(+) (11)	NA	P24792	L-ascorbate oxidase	AT4G39830.1	Cupredoxin superfamily protein 	LOC_Os09g20090.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.328.1.A1_at	A	A1TS	POPTR_0003s12670	POPTR_0003s12670 (10)	scaffold_3:13187718-13188581(+) (10)	NA	P41230	Lysine-specific demethylase 5C	AT1G63490.1	transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	Medtr5g010400.1	"transcription factor jumonji, related "	NA	NA	GO:0005634|nucleus
Ptp.3281.1.S1_at	A	A1TS	POPTR_0006s27320	POPTR_0006s27320 (11)	scaffold_6:25264933-25266153(+) (11)	NA	Q8VY97	UPF0480 protein At4g32130	AT2G25310.1	Protein of unknown function (DUF2012) 	LOC_Os06g43650.2	"secreted salivary protein, putative, expressed"	Medtr3g137720.1	Carbohydrate-binding-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3282.1.A1_s_at	A	A1TS	POPTR_0004s18610	POPTR_0004s18610 (11)	scaffold_4:18446799-18447141(-) (11)	NA	Q39108	"Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic"	AT4G38460.1	geranylgeranyl reductase 	LOC_Os02g44780.3	"polyprenyl synthetase, putative, expressed"	AC146550_1.1	Polyprenyl synthetase AC146550.40 4-1850 E EGN_Mt090430 200	GO:0008299|isoprenoid biosynthetic process	NA	NA
Ptp.3284.1.S1_at	A	A1TS	POPTR_0003s05000	POPTR_0003s05000 (10)	scaffold_3:6152655-6154246(+) (10)	NA	Q9CA86	Peroxisome assembly protein 2	AT1G79810.1	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g19480.1	"peroxisome assembly protein, putative, expressed"	Medtr8g015150.1	"Zinc finger, RING-type; Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
Ptp.3284.1.S1_s_at	A	A2TS	POPTR_0001s18670	POPTR_0003s05000 (11)//POPTR_0001s18670 (11)	scaffold_1:15755451-15756832(-) (11)//scaffold_3:6152570-6153984(+) (11)	NA	Q9CA86	Peroxisome assembly protein 2	AT1G79810.1	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g19480.1	"peroxisome assembly protein, putative, expressed"	Medtr8g015150.1	"Zinc finger, RING-type; Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
Ptp.3285.1.S1_at	A	A1TS	POPTR_0016s03740	POPTR_0016s03740 (11)	scaffold_16:2080611-2081810(-) (11)	NA	P94111	Strictosidine synthase 1	AT3G57030.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g53950.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
Ptp.3289.1.A1_at	A	A1TS	POPTR_0004s02500	POPTR_0004s02500 (9)	scaffold_4:1652711-1653266(+) (9)	POPTR_0004s01260 (6)	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35580.1	"TKL_IRAK_DUF26-lc.20 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.329.1.S1_s_at	A	A1TS	POPTR_0016s02020	POPTR_0016s02020 (11)	scaffold_16:957255-957679(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
Ptp.329.2.S1_at	A	A1MS	POPTR_0016s02020	POPTR_0016s02020 (11)	scaffold_16:955916-955979(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
Ptp.3290.2.S1_a_at	A	A1TS	POPTR_0007s07760	POPTR_0007s07760 (11)	scaffold_7:6181830-6181870(-) (11)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.3290.3.S1_at	A	A1MS	POPTR_0007s07760	POPTR_0007s07760 (10)	scaffold_7:6181696-6181835(-) (10)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.3291.1.A1_s_at	A	A1TS	POPTR_0010s21460	POPTR_0010s21460 (11)	scaffold_10:18726190-18728063(-) (11)	NA	NA	NA	AT5G59613.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). 	LOC_Os03g40920.1	expressed protein	Medtr2g114440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3293.1.S1_s_at	A	A2TS	POPTR_0002s06660	POPTR_0002s06660 (11)//POPTR_0005s21660 (11)	scaffold_2:4469169-4469218(-) (11)//scaffold_5:20770129-20770178(+) (11)	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.3	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3295.1.S1_at	A	A1TS	POPTR_0013s01710	POPTR_0013s01710 (9)	scaffold_13:970945-973497(-) (9)	NA	NA	NA	AT3G05545.1	RING/U-box superfamily protein 	LOC_Os05g06270.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3296.1.S1_s_at	A	A1TS	POPTR_0007s14960	POPTR_0007s14960 (11)	scaffold_14:976708-976756(-) (10)//scaffold_7:14631120-14631686(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.3296.2.S1_s_at	A	A1TS	POPTR_0007s14960	POPTR_0007s14960 (11)	scaffold_7:14628721-14630168(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.3298.1.A1_s_at	A	A1TS	POPTR_0009s03020	POPTR_0009s03020 (11)	scaffold_9:3741311-3741943(+) (11)	NA	Q9ZPW9	Non-specific lipid-transfer protein 8	AT2G18370.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g34840.1	"LTPL5 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr2g080460.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.33.1.S1_at	A	A1TS	POPTR_0010s06700	POPTR_0010s06700 (11)	scaffold_10:7986750-7987008(+) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.33.2.S1_s_at	A	A2TS	POPTR_0008s17840	POPTR_0008s17840 (11)//POPTR_0010s06700 (11)	scaffold_10:7986472-7986674(+) (11)//scaffold_8:11975577-11975779(-) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.330.1.A1_s_at	A	A1TS	POPTR_0003s08300	POPTR_0003s08300 (11)	scaffold_3:9696141-9696527(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.4	casein kinase II  beta chain 1 	LOC_Os10g41520.2	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.3303.1.S1_at	A	A1TS	POPTR_0009s02250	POPTR_0009s02250 (9)	scaffold_9:2967079-2967380(-) (10)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3308.1.S1_s_at	A	A2TS	POPTR_0008s11410	POPTR_0010s02840 (9)//POPTR_0008s11410 (9)	scaffold_10:3337976-3338356(+) (9)//scaffold_8:7247387-7247913(-) (9)	NA	NA	NA	AT3G21550.1	DUF679 domain membrane protein 2 	LOC_Os03g25440.1	expressed protein	Medtr2g025940.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.331.1.S1_at	A	A1TS	POPTR_0014s12440	POPTR_0014s12440 (11)	scaffold_14:9176713-9178589(+) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT1G02840.3	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr8g068270.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3313.1.S1_s_at	A	A1TS	POPTR_0009s05870	POPTR_0009s05870 (11)	scaffold_9:5838329-5838476(-) (11)	NA	Q9C6I8	Probable nucleolar GTP-binding protein 1	AT1G50920.1	Nucleolar GTP-binding protein 	LOC_Os07g01920.1	"nucleolar GTP-binding protein 1, putative, expressed"	Medtr8g021130.1	"Nucleolar GTP-binding 1; NOG, C-terminal "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3318.1.A1_at	A	A1TS	POPTR_0010s18600	POPTR_0010s18600 (11)	scaffold_10:16803959-16804375(-) (11)	NA	Q9FIW4	Beta-glucosidase 42	AT5G36890.1	beta glucosidase 42 	LOC_Os01g67220.2	"Os1bglu4 - beta-glucosidase-like protein without signal sequence, expressed"	Medtr3g040460.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3320.1.S1_at	A	A1TS	POPTR_0010s17190	POPTR_0010s17190 (11)	scaffold_10:15889084-15890854(-) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
Ptp.3320.1.S1_s_at	A	A1TS	POPTR_0010s17190	POPTR_0010s17190 (11)	scaffold_10:15888823-15888938(-) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
Ptp.3320.1.S1_x_at	A	A1TS	POPTR_0010s17190	POPTR_0010s17190 (11)	scaffold_10:15888861-15890854(-) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
Ptp.3322.1.S1_at	A	A1TS	POPTR_0007s11530	POPTR_0007s11530 (10)	scaffold_7:11892034-11892309(-) (10)	NA	Q9FKZ1	Probable disease resistance protein At5g66900	AT5G66900.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os12g39620.2	"disease resistance protein, putative, expressed"	Medtr5g018040.1	NB-ARC; Arabidopsis broad-spectrum mildew resistance 	NA	GO:0005515|protein binding	NA
Ptp.3323.1.S1_s_at	A	A1TS	POPTR_0003s15040	POPTR_0003s15040 (11)	scaffold_3:14942532-14943033(+) (11)	NA	Q8VY90	Ethylene-responsive transcription factor ERF105	AT5G51190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3324.1.A1_a_at	A	A1TS	POPTR_0010s07490	POPTR_0010s07490 (11)	scaffold_10:8540568-8540841(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3325.1.S1_at	A	A1TS	POPTR_0001s04240	POPTR_0001s04240 (11)	scaffold_1:3349479-3350363(+) (11)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3325.3.A1_at	A	A1TA	POPTR_0003s21120	POPTR_0003s21120 (9)	scaffold_3:19401606-19401896(-) (9)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3327.1.S1_at	A	A1TS	POPTR_0015s14640	POPTR_0015s14640 (11)	scaffold_15:14167013-14167275(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010220.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.3327.1.S1_s_at	A	A1TS	POPTR_0015s14640	POPTR_0015s14640 (11)	scaffold_15:14167291-14167446(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010220.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.3328.1.S1_s_at	A	A1TS	POPTR_0016s03220	POPTR_0016s03220 (11)	scaffold_16:1639226-1639468(-) (11)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3328.2.S1_at	A	A1TS	POPTR_0016s03220	POPTR_0016s03220 (10)	scaffold_16:1641148-1641311(-) (10)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.333.1.S1_at	A	A1TS	POPTR_0003s11700	POPTR_0003s11700 (11)	scaffold_3:12496106-12496451(-) (11)	NA	Q9SZ69	Zinc finger A20 and AN1 domain-containing stress-associated protein 7	AT4G12040.2	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g087220.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.3332.1.S1_at	A	A1TS	POPTR_0006s22070	POPTR_0006s22070 (11)	scaffold_6:21091571-21091964(+) (11)	NA	Q9C615	Putative syntaxin-24	AT2G35980.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os04g58850.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr8g139130.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
Ptp.3333.1.A1_s_at	A	A1TS	POPTR_0001s09830	POPTR_0001s09830 (11)	scaffold_1:7586231-7587323(+) (11)	NA	P92947	"Monodehydroascorbate reductase, chloroplastic"	AT1G63940.2	monodehydroascorbate reductase 6 	LOC_Os08g05570.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.3335.1.S1_s_at	A	A1TS	POPTR_0006s04930	POPTR_0006s04930 (11)	scaffold_6:3440426-3440775(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3336.1.S1_s_at	A	A1TS	POPTR_0012s07600	POPTR_0012s07600 (11)	scaffold_12:8509240-8511832(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g60950.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3337.1.S1_s_at	A	A1TS	POPTR_0019s13880	POPTR_0019s13880 (9)	scaffold_19:14754039-14754434(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3338.1.S1_s_at	A	A1TS	POPTR_0005s10830	POPTR_0005s10830 (11)	scaffold_5:7800504-7801151(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G35780.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3339.1.S1_s_at	A	A1TS	POPTR_0011s12650	POPTR_0011s12650 (11)	scaffold_11:15356554-15357515(+) (11)	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.334.1.A1_at	A	A1TS	POPTR_0019s03750	POPTR_0019s03750 (11)	scaffold_19:3847147-3847522(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT5G29000.2	Homeodomain-like superfamily protein 	LOC_Os03g21240.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.334.2.S1_at	A	A1TS	POPTR_0019s03750	POPTR_0019s03750 (9)	scaffold_19:3850162-3850560(-) (9)	NA	Q9SAK5	Myb family transcription factor APL	AT5G29000.2	Homeodomain-like superfamily protein 	LOC_Os03g21240.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3340.1.S1_s_at	A	A1TS	POPTR_0012s12900	POPTR_0012s12900 (11)	scaffold_12:13272751-13273358(+) (11)	NA	Q94AI4	Methyltransferase-like protein 1	AT4G09980.1	Methyltransferase MT-A70 family protein 	LOC_Os10g31030.1	"EMB1691, putative, expressed"	Medtr1g126680.1	N-6 Adenine-specific DNA methylase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008168|methyltransferase activity	NA
Ptp.3342.1.A1_at	A	A1TS	POPTR_0002s01830	POPTR_0002s01830 (11)	scaffold_2:973269-973454(-) (11)	NA	Q3ECD0	"RNA pseudourine synthase 2, chloroplastic"	AT1G76050.2	Pseudouridine synthase family protein 	LOC_Os06g50360.1	"pseudouridine synthase family protein, putative, expressed"	Medtr3g157130.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.3342.2.S1_at	A	A1TS	POPTR_0002s01830	POPTR_0002s01830 (11)	scaffold_2:974069-974868(-) (11)	NA	Q3ECD0	"RNA pseudourine synthase 2, chloroplastic"	AT1G76050.2	Pseudouridine synthase family protein 	LOC_Os06g50360.1	"pseudouridine synthase family protein, putative, expressed"	Medtr3g157130.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.3351.1.S1_s_at	A	A1TS	POPTR_0013s12680	POPTR_0013s12680 (11)	scaffold_13:13383448-13383488(+) (11)	NA	Q9P7W0	OPA3-like protein	AT1G28510.1	Optic atrophy 3 protein (OPA3) 	LOC_Os02g20844.1	expressed protein	Medtr2g018330.1	Optic atrophy 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3352.1.S1_s_at	A	A1TS	POPTR_0006s10980	POPTR_0006s10980 (11)	scaffold_6:8342022-8342414(+) (11)	NA	Q148K0	Transcription elongation factor A protein 2	AT2G38560.1	transcript elongation factor IIS 	LOC_Os03g60130.2	"transcription elongation factor protein, putative, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.3353.1.S1_s_at	A	A1TS	POPTR_0002s11310	POPTR_0002s11310 (11)	scaffold_2:8364247-8364638(-) (11)	NA	Q9FKP0	"50S ribosomal protein 6, chloroplastic"	AT5G17870.1	plastid-specific 50S ribosomal protein 6 	LOC_Os11g34940.1	"plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed"	Medtr3g127970.1	"Plastid-specific 50S ribosomal protein 6, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3354.1.A1_s_at	A	A1TS	POPTR_0005s00710	POPTR_0005s00710 (11)	scaffold_5:310185-310871(-) (11)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3359.1.S1_at	A	A1TS	POPTR_0019s00230	POPTR_0019s00230 (10)	scaffold_19:32095-32706(+) (10)//scaffold_261:14723-15341(+) (10)	NA	Q96282	Chloride channel protein CLC-c	AT5G49890.1	chloride channel C 	LOC_Os04g36560.2	"chloride channel protein, putative, expressed"	Medtr6g071480.1	"Cl- channel, voltage gated; Glycine betaine/L-proline transport ATP-binding subunit "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
Ptp.336.1.S1_at	A	A1TS	POPTR_0019s15110	POPTR_0019s15110 (11)	scaffold_19:15705582-15705759(-) (11)	NA	O24312	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3362.1.A1_s_at	A	A1TS	POPTR_0009s14520	POPTR_0009s14520 (11)	scaffold_9:11373847-11375072(+) (11)	NA	Q4V8J4	Glycerol-3-phosphate acyltransferase 3	AT5G60620.1	glycerol-3-phosphate acyltransferase 9 	LOC_Os07g34730.1	"acyltransferase, putative, expressed"	Medtr8g129160.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.3363.1.S1_s_at	A	A1TS	POPTR_0010s02390	POPTR_0010s02390 (11)	scaffold_10:2760765-2761358(-) (11)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr8g139200.1	DIRP; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3364.1.S1_at	A	A1MS	POPTR_0006s03850	POPTR_0006s03850 (11)	scaffold_6:2588436-2588826(+) (11)	NA	Q5ZJQ8	Ubiquitin-associated domain-containing protein 2	AT3G56740.1	Ubiquitin-associated (UBA) protein 	LOC_Os01g16330.1	"OsRhmbd2 - Putative Rhomboid homologue, expressed"	Medtr7g106540.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3365.2.A1_s_at	A	A1TS	POPTR_0013s01760	POPTR_0013s01760 (11)	scaffold_13:1000947-1001734(-) (11)	NA	Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G27730.1	Protein of unknown function (DUF1624) 	LOC_Os01g70550.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr7g138520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3367.1.S1_at	A	A1TS	POPTR_0011s14020	POPTR_0011s14020 (11)	scaffold_11:16615852-16615898(+) (11)	NA	NA	NA	AT5G54855.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os02g21280.1	"POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr3g068130.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3367.1.S1_s_at	A	A1TS	POPTR_0011s14020	POPTR_0011s14020 (11)	scaffold_11:16614061-16615649(+) (11)	NA	NA	NA	AT5G54855.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os02g21280.1	"POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr3g068130.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3368.1.S1_at	A	A1TS	POPTR_0012s13510	POPTR_0012s13510 (9)	scaffold_12:13637300-13637687(-) (9)	NA	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os10g35870.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.337.1.A1_at	A	A1TS	POPTR_0016s05240	POPTR_0016s05240 (11)	scaffold_16:3195050-3195548(+) (11)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os12g41180.1	"LSTK-1-like kinase, putative, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3370.1.S1_at	A	A1TS	POPTR_0006s09650	POPTR_0006s09650 (11)	scaffold_6:7088952-7089911(-) (11)	NA	Q9Y2M2	Uncharacterized protein C3orf32	AT2G38000.1	chaperone protein dnaJ-related 	LOC_Os05g25210.1	expressed protein	Medtr2g085150.1	"Uncharacterized protein C3orf32, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3372.1.S1_at	A	A1TS	POPTR_0006s22410	POPTR_0006s22410 (11)	scaffold_6:21428185-21428485(+) (11)	NA	NA	NA	AT3G11591.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3373.1.A1_at	A	A1TS	POPTR_0013s04480	POPTR_0013s04480 (11)	scaffold_13:3074409-3074955(-) (11)	NA	NA	NA	AT5G28910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 82 Blast hits to 80 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os02g56500.1	expressed protein	Medtr1g093750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3375.1.S1_at	A	A1TS	POPTR_0016s02760	POPTR_0016s02760 (11)	scaffold_16:1368835-1369742(+) (11)	POPTR_1436s00210 (7)	P11891	"50S ribosomal protein 5, chloroplastic"	NA	NA	NA	NA	Medtr7g105340.1	"Plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3375.2.S1_at	A	A2MS	POPTR_0016s02690	POPTR_0016s02690 (11)//POPTR_1436s00210 (10)	scaffold_1436:4931-5042(+) (10)//scaffold_16:1332944-1333055(+) (11)//scaffold_16:1355501-1355598(+) (9)	POPTR_0016s02760 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3377.1.S1_at	A	A1TS	POPTR_0007s14280	POPTR_0007s14280 (11)	scaffold_7:14115408-14115711(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G65470.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr5g033490.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3377.1.S1_s_at	A	A1TS	POPTR_0007s14280	POPTR_0007s14280 (11)	scaffold_7:14114287-14115577(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G65470.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr5g033490.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3380.1.S1_at	A	A1TS	POPTR_0006s14100	POPTR_0006s14100 (11)	scaffold_6:11404109-11404341(+) (11)	NA	Q84QC2	Ethylene-responsive transcription factor ERF017	AT1G19210.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g09790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr2g050000.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3381.1.S1_at	A	A1TS	POPTR_0012s07980	POPTR_0012s07980 (11)	scaffold_12:8968365-8968764(-) (11)	NA	NA	NA	AT1G24450.1	Ribonuclease III family protein 	LOC_Os03g63740.1	"NFD2, putative, expressed"	Medtr8g125490.1	Ribonuclease III 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003723|RNA binding	NA
Ptp.3382.1.S1_at	A	A1TS	POPTR_0018s00800	POPTR_0018s00800 (11)	scaffold_18:699232-699747(-) (11)	NA	Q8GZ63	Pentatricopeptide repeat-containing protein At5g25630	AT5G25630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g12810.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g009410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3384.1.A1_at	A	A1TS	POPTR_0001s24610	POPTR_0001s24610 (10)	scaffold_1:23859687-23860153(-) (10)	NA	O95208	Epsin-2	AT3G46540.1	ENTH/VHS family protein 	LOC_Os01g62370.1	"ENTH domain containing protein, expressed"	Medtr1g090360.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3386.1.S1_s_at	A	A1TS	POPTR_0018s01300	POPTR_0018s01300 (11)	scaffold_18:1267030-1267369(+) (11)	NA	O48780	3-ketoacyl-CoA synthase 11	AT2G26640.1	3-ketoacyl-CoA synthase 11 	LOC_Os06g39750.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr8g119040.1	"Ribosomal protein S10; Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.339.1.S1_at	A	A1TS	POPTR_0011s10100	POPTR_0011s10100 (11)	scaffold_11:12614445-12614628(-) (11)	NA	P07245	"C-1-tetrahydrofolate synthase, cytoplasmic"	AT3G12290.1	Amino acid dehydrogenase family protein 	LOC_Os05g05830.1	"bifunctional protein folD, putative, expressed"	Medtr7g130340.1	Tetrahydrofolate dehydrogenase/cyclohydrolase 	GO:0044281|small molecule metabolic process||GO:0009396|folic acid and derivative biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.3391.1.S1_at	A	A1TS	POPTR_0010s08340	POPTR_0010s08340 (11)	scaffold_10:9295749-9296122(+) (11)	NA	Q9LSW9	RING-H2 finger protein ATL16	AT5G43420.1	RING/U-box superfamily protein 	LOC_Os02g57460.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr1g042550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3392.1.A1_s_at	A	A1MS	POPTR_0001s33660	POPTR_0001s33660 (11)	scaffold_1:31856743-31857032(-) (11)	NA	NA	NA	AT3G27030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g30360.1	expressed protein	Medtr4g147160.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3393.1.A1_at	A	A1TS	POPTR_0003s20010	POPTR_0003s20010 (11)	scaffold_3:18633822-18635722(+) (11)	NA	Q5PQR5	U3 small nucleolar ribonucleoprotein protein IMP4	AT1G63780.1	Ribosomal RNA processing Brix domain protein 	LOC_Os08g05880.1	"Brix domain containing protein, putative, expressed"	Medtr3g020870.1	Brix 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3394.1.S1_at	A	A1TS	POPTR_0010s05940	POPTR_0010s05940 (11)	scaffold_10:7373293-7373687(+) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os12g19030.1	"copine, putative, expressed"	Medtr3g102530.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3396.1.S1_s_at	A	A1MS	POPTR_0005s18240	POPTR_0005s18240 (11)	scaffold_5:16363694-16364071(+) (11)	NA	O22042	Mitogen-activated protein kinase kinase kinase 3	AT5G67080.1	mitogen-activated protein kinase kinase kinase 19 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3399.1.S1_at	A	A1TS	POPTR_0012s03880	POPTR_0012s03880 (11)	scaffold_12:3109027-3110235(+) (11)	NA	Q9C9X3	Annexin D5	AT1G68090.1	annexin 5 	LOC_Os09g23160.1	"annexin, putative, expressed"	Medtr4g154520.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
Ptp.34.1.A1_at	A	A2TS	POPTR_0014s07630	POPTR_0014s07630 (11)//POPTR_0014s07610 (10)	scaffold_14:5714947-5715115(+) (11)//scaffold_14:5722313-5722481(+) (11)	NA	Q1W374	Phosphomannomutase	AT2G45790.1	phosphomannomutase 	LOC_Os04g58580.1	"phosphomannomutase, putative, expressed"	Medtr7g084420.1	Eukaryotic phosphomannomutase 	GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0019307|mannose biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004615|phosphomannomutase activity	GO:0005737|cytoplasm
Ptp.340.1.A1_s_at	A	A1TS	POPTR_0004s11470	POPTR_0004s11470 (11)	scaffold_4:10199213-10199658(-) (11)	NA	Q9LVP9	Vesicle transport v-SNARE 13	AT5G39510.1	Vesicle transport v-SNARE family protein 	LOC_Os01g51120.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr6g013360.1	Vesicle transport v-SNARE 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane
Ptp.3400.1.S1_s_at	A	A1TS	POPTR_0012s03610	POPTR_0012s03610 (11)	scaffold_12:2838874-2839001(+) (11)	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.3400.2.S1_a_at	A	A1TS	POPTR_0012s03610	POPTR_0012s03610 (10)	scaffold_12:2837835-2838248(+) (10)	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.3401.1.S1_at	A	A1MS	POPTR_0001s22330	POPTR_0001s22330 (9)	scaffold_1:20945125-20945744(-) (9)	NA	O75937	DnaJ homolog subfamily C member 8	AT5G22080.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g15480.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g104870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3403.1.S1_at	A	A1TS	POPTR_0006s22810	POPTR_0006s22810 (11)	scaffold_6:21715129-21715478(+) (11)	NA	P37107	"Signal recognition particle 54 kDa protein, chloroplastic"	AT5G03940.1	chloroplast signal recognition particle 54 kDa subunit 	LOC_Os11g05556.1	"signal recognition particle 54 kDa protein, putative, expressed"	Medtr7g127650.1	"GTP-binding signal recognition particle SRP54, G-domain "	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0006614|SRP-dependent cotranslational protein targeting to membrane||GO:0044260|cellular macromolecule metabolic process	GO:0008312|7S RNA binding||GO:0005525|GTP binding||GO:0005515|protein binding	GO:0048500|signal recognition particle
Ptp.3404.1.S1_at	A	A1TS	POPTR_0007s15200	POPTR_0007s15200 (9)	scaffold_7:14812430-14813146(-) (9)	NA	P38605	Cycloartenol synthase	AT2G07050.1	cycloartenol synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr5g008860.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
Ptp.3409.1.S1_at	A	A1MS	POPTR_0002s13960	POPTR_0002s13960 (9)	scaffold_2:10354959-10355194(+) (9)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.341.1.A1_at	A	A1TS	POPTR_0013s04180	POPTR_0013s04180 (11)	scaffold_13:2797294-2797826(+) (11)	NA	NA	NA	AT3G04560.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; Has 227 Blast hits to 225 proteins in 83 species: Archae - 0; Bacteria - 17; Metazoa - 98; Fungi - 29; Plants - 51; Viruses - 1; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os02g57500.1	expressed protein	Medtr1g093410.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3410.1.S1_at	A	A1TS	POPTR_0018s12980	POPTR_0018s12980 (11)	scaffold_18:13436358-13436636(-) (11)	POPTR_0006s06690 (7)	NA	NA	AT3G15790.1	methyl-CPG-binding domain 11 	LOC_Os12g42550.1	"methyl-CpG binding domain containing protein, putative, expressed"	Medtr8g120840.1	Methyl-CpG binding 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.3421.2.S1_s_at	A	A1TS	POPTR_0018s08940	POPTR_0018s08940 (11)	scaffold_18:9857800-9858298(+) (11)	NA	Q9ZPI6	Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1	AT4G29010.1	Enoyl-CoA hydratase/isomerase family 	LOC_Os02g17390.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr6g099470.1	IQ calmodulin-binding region; Enoyl-CoA hydratase/isomerase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.343.1.A1_at	A	A1TS	POPTR_0009s11610	POPTR_0009s11610 (9)	scaffold_9:9607161-9607634(-) (9)	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3430.1.S1_at	A	A1TS	POPTR_0009s01990	POPTR_0009s01990 (11)	scaffold_9:2562518-2563644(+) (11)	NA	Q9SE43	Homeobox-leucine zipper protein REVOLUTA	AT5G60690.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g01890.1	"START domain containing protein, expressed"	Medtr2g110200.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3435.1.S1_s_at	A	A2TS	POPTR_0002s07960	POPTR_0002s07960 (11)//POPTR_0002s08040 (9)	scaffold_2:5496264-5496438(-) (11)//scaffold_2:5531316-5531488(-) (10)//scaffold_2:5562015-5562127(+) (9)	NA	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3435.2.S1_s_at	A	A2TS	POPTR_0002s07960	POPTR_0002s08040 (11)//POPTR_0002s07960 (11)	scaffold_2:5495564-5496000(-) (11)//scaffold_2:5562391-5562831(+) (11)	POPTR_0005s20400 (6)	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3438.1.S1_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20852026-20853371(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
Ptp.3438.2.S1_s_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20856962-20857175(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
Ptp.3439.1.S1_s_at	A	A1TS	POPTR_0010s02090	POPTR_0010s02090 (9)	scaffold_10:2418983-2419723(-) (11)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
Ptp.3440.1.S1_at	A	A1TS	POPTR_0006s24400	POPTR_0006s24400 (9)	scaffold_6:23013320-23013809(-) (9)	NA	Q43866	"Beta-fructofuranosidase, insoluble isoenzyme CWINV1"	AT3G13790.2	Glycosyl hydrolases family 32 protein 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr1g019970.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3443.1.S1_at	A	A1MS	POPTR_0012s09080	POPTR_0012s09080 (10)	scaffold_12:10154321-10154697(-) (10)	NA	Q14149	MORC family CW-type zinc finger protein 3	AT1G19100.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os01g36840.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3445.1.S1_at	A	A1MS	POPTR_0014s17010	POPTR_0014s17010 (10)	scaffold_14:13197910-13198415(+) (10)	NA	Q8LPQ9	Flowering time control protein FPA	AT4G12640.1	RNA recognition motif (RRM)-containing protein 	LOC_Os09g12730.2	"RNA recognition motif containing protein, expressed"	Medtr3g111300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3450.1.S1_at	A	A1TS	POPTR_0013s15730	POPTR_0013s15730 (11)	scaffold_13:15635349-15635807(-) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT5G10860.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.4	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3452.1.A1_s_at	A	A1TS	POPTR_0008s19980	POPTR_0008s19980 (11)	scaffold_8:13806234-13806854(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g35060.3	expressed protein	Medtr4g142730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3456.1.S1_at	A	A1TS	POPTR_0001s13700	POPTR_0001s13700 (9)	scaffold_1:10791833-10792697(+) (9)	NA	Q9FYG2	Calmodulin-binding transcription activator 4	AT1G67310.1	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains 	LOC_Os04g31900.1	"calmodulin-binding transcription activator 4, putative, expressed"	Medtr3g104090.1	IQ calmodulin-binding region; Cell surface receptor IPT/TIG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.346.1.S1_s_at	A	A1TS	POPTR_0005s08650	POPTR_0005s08650 (11)	scaffold_5:6018879-6019907(-) (11)	NA	Q9SJ05	"Shikimate kinase, chloroplastic"	AT2G21940.4	shikimate kinase 1 	LOC_Os04g54800.1	"shikimate kinase, putative, expressed"	NA	NA	NA	GO:0004765|shikimate kinase activity||GO:0005524|ATP binding	NA
Ptp.3460.1.S1_s_at	A	A1MS	POPTR_0006s10590	POPTR_0006s10590 (11)	scaffold_6:7923681-7924099(-) (11)	NA	NA	NA	AT5G01710.1	methyltransferases 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3461.1.S1_s_at	A	A1TS	POPTR_0010s06810	POPTR_0010s06810 (11)	scaffold_10:8067504-8068066(-) (11)	NA	O48700	U-box domain-containing protein 6	AT1G24330.1	ARM repeat superfamily protein 	LOC_Os01g67500.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr3g103550.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.3464.1.S1_at	A	A1TS	POPTR_0003s16160	POPTR_0003s16160 (9)	scaffold_3:15764190-15764670(-) (9)	NA	NA	NA	AT5G13310.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g32580.1	expressed protein	Medtr7g097090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3465.2.S1_s_at	A	A1TS	POPTR_0016s03770	POPTR_0016s03770 (11)	scaffold_16:2117498-2117750(-) (11)	NA	P53780	"Cystathionine beta-lyase, chloroplastic"	AT3G57050.1	cystathionine beta-lyase 	LOC_Os06g07960.1	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
Ptp.3466.1.S1_at	A	A1TS	POPTR_0017s03380	POPTR_0017s03380 (9)	scaffold_17:2480635-2481178(+) (9)	NA	Q9LFR1	Probable peptide/nitrate transporter At5g14940	AT5G14940.1	Major facilitator superfamily protein 	LOC_Os06g13210.1	"peptide transporter PTR2, putative, expressed"	Medtr6g009300.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3467.1.S1_at	A	A1TS	POPTR_0017s00530	POPTR_0017s00530 (11)	scaffold_17:203276-203667(-) (11)	NA	O54873	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1	AT3G59980.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g23820.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	NA	GO:0000049|tRNA binding	NA
Ptp.3468.1.S1_at	A	A1TS	POPTR_0004s04010	POPTR_0004s04010 (9)	scaffold_4:2858386-2858804(+) (9)	NA	Q5YDB6	RNA polymerase II C-terminal domain phosphatase-like 1	AT4G21670.1	C-terminal domain phosphatase-like 1 	LOC_Os02g42600.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g024780.1	NLI interacting factor 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
Ptp.3469.1.S1_at	A	A2TS	POPTR_0010s01330	POPTR_0010s02110 (11)//POPTR_0010s01330 (11)	scaffold_10:1327502-1329250(+) (11)//scaffold_10:2432984-2434729(-) (11)	NA	P19515	Lipase	AT5G18640.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g30900.1	"lipase precursor, putative, expressed"	Medtr2g025130.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.3469.1.S1_s_at	A	A2TS	POPTR_0010s01330	POPTR_0010s02110 (11)//POPTR_0010s01330 (11)	scaffold_10:1329353-1331539(+) (11)//scaffold_10:2430764-2432881(-) (11)	NA	P19515	Lipase	AT5G18640.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g30900.1	"lipase precursor, putative, expressed"	Medtr2g025130.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.3471.1.A1_s_at	A	A1TS	POPTR_0001s23850	POPTR_0001s23850 (11)	scaffold_1:23233216-23233626(+) (11)	NA	NA	NA	AT2G44300.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g07100.1	"LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g105470.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3474.1.S1_at	A	A1TS	POPTR_0011s04640	POPTR_0011s04640 (10)	scaffold_11:4608787-4609523(+) (10)	NA	O04084	Serine carboxypeptidase-like 31	AT1G11080.1	serine carboxypeptidase-like 31 	LOC_Os01g22954.1	"serine carboxypeptidase, putative, expressed"	Medtr2g014510.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3476.1.S1_s_at	A	A1TS	POPTR_0011s00360	POPTR_0011s00360 (11)	scaffold_11:145504-145585(+) (11)	NA	P0CH32	Polyubiquitin 4	AT5G20620.1	ubiquitin 4 	LOC_Os04g53620.2	"ubiquitin family protein, putative, expressed"	Medtr4g110760.4	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3478.1.S1_at	A	A1TS	POPTR_0006s03720	POPTR_0006s03720 (9)	scaffold_6:2492475-2493020(+) (9)	NA	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr7g106840.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3479.1.S1_s_at	A	A1TS	POPTR_0015s05510	POPTR_0015s05510 (11)	scaffold_15:5841178-5841860(-) (11)	NA	Q9WTW5	Solute carrier family 22 member 3	AT1G73220.1	organic cation/carnitine transporter1 	LOC_Os07g37510.1	"organic cation transporter-related, putative"	Medtr4g031840.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.348.1.S1_at	A	A1TS	POPTR_0006s26280	POPTR_0006s26280 (11)	scaffold_6:24527513-24528822(+) (11)	NA	NA	NA	AT5G11440.1	CTC-interacting domain 5 	NA	NA	Medtr1g012800.1	Ubiquitin system component Cue 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3480.1.S1_s_at	A	A1TS	POPTR_0010s16730	POPTR_0010s16730 (11)	scaffold_10:15590239-15590742(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT5G15490.1	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25700.3	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.3481.1.A1_a_at	A	A1TS	POPTR_0007s10890	POPTR_0007s10890 (11)	scaffold_7:11080259-11080482(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3481.1.A1_at	A	A1TS	POPTR_0007s10890	POPTR_0007s10890 (10)	scaffold_7:11080169-11081074(-) (10)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3481.2.A1_a_at	A	A1TS	POPTR_0007s10890	POPTR_0007s10890 (11)	scaffold_7:11080470-11080624(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3483.1.S1_s_at	A	A1TS	POPTR_0001s29710	POPTR_0001s29710 (11)	scaffold_1:28349683-28349918(+) (11)	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	LOC_Os01g34780.2	"protein binding protein, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
Ptp.3484.1.S1_at	A	A1TS	POPTR_0019s14910	POPTR_0019s14910 (11)	scaffold_19:15551349-15551824(-) (11)	NA	Q9LVL5	Probable serine/threonine-protein kinase WNK4	AT5G58350.1	with no lysine (K) kinase 4 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g083060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3489.1.S1_at	A	A1TS	POPTR_0006s17900	POPTR_0006s17900 (11)	scaffold_6:16148554-16148759(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.3489.1.S1_s_at	A	A1TS	POPTR_0006s17900	POPTR_0006s17900 (11)	scaffold_6:16148769-16149729(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.3491.1.S1_s_at	A	A1TS	POPTR_0019s08630	POPTR_0019s08630 (11)	scaffold_19:10161786-10161962(-) (11)	NA	NA	NA	AT3G56360.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g52680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3492.1.S1_s_at	A	A1TS	POPTR_0009s10230	POPTR_0009s10230 (11)	scaffold_9:8837530-8838092(-) (11)	NA	Q6ZQ89	E3 ubiquitin-protein ligase MARCH6	AT4G34100.2	RING/U-box superfamily protein 	LOC_Os06g43210.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130230.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3493.1.S1_s_at	A	A1TS	POPTR_0014s13710	POPTR_0014s13710 (11)	scaffold_14:10049170-10049749(+) (11)	NA	Q9NR19	"Acetyl-coenzyme A synthetase, cytoplasmic"	AT5G36880.2	acetyl-CoA synthetase 	LOC_Os02g32490.1	"AMP-binding enzyme, putative, expressed"	Medtr7g099650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3494.1.S1_at	A	A1TS	POPTR_0001s28570	POPTR_0001s28570 (10)	scaffold_1:27353757-27355044(+) (10)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT1G07120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). "	LOC_Os03g18300.1	"chloroplast unusual positioning protein, putative, expressed"	Medtr5g080130.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3497.1.S1_at	A	A1TS	POPTR_0005s27810	POPTR_0005s27810 (11)	scaffold_5:25292408-25292645(-) (11)	NA	Q9I8B3	RNA-binding protein 24-B	AT1G76460.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g48340.2	"RNA recognition motif containing protein, putative, expressed"	Medtr3g159840.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3499.1.S1_at	A	A1MS	POPTR_0006s06040	POPTR_0006s06040 (9)	scaffold_6:4297044-4297493(-) (9)	NA	Q8N1E6	F-box/LRR-repeat protein 14	AT1G15740.1	Leucine-rich repeat family protein 	LOC_Os04g42470.4	"regulatory subunit, putative, expressed"	Medtr8g122250.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
Ptp.35.1.A1_at	A	A1TS	POPTR_0005s17670	POPTR_0005s17670 (11)	scaffold_5:15293292-15295510(-) (11)	NA	Q8N5D0	WD and tetratricopeptide repeats protein 1	AT5G10940.2	transducin family protein / WD-40 repeat family protein 	LOC_Os03g08830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g148940.1	WD40-like; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.350.1.A1_at	A	A1TS	POPTR_0001s19190	POPTR_0001s19190 (11)	scaffold_1:16650082-16650258(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.350.1.A1_s_at	A	A1TS	POPTR_0001s19190	POPTR_0001s19190 (11)	scaffold_1:16650201-16650684(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.3500.1.S1_at	A	A1TS	POPTR_0012s02210	POPTR_0012s02210 (10)	scaffold_12:1853257-1853572(+) (10)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3502.2.S1_a_at	A	A1TS	POPTR_0003s02570	POPTR_0003s02570 (11)	scaffold_3:2668835-2669291(+) (11)	NA	Q9SSQ4	Protein FAR1-RELATED SEQUENCE 6	AT1G52520.1	FAR1-related sequence 6 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr2g034270.1	"FAR1; Heavy metal transport/detoxification protein; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3503.1.A1_at	A	A1TS	POPTR_0014s08550	POPTR_0014s08550 (11)	scaffold_14:6355412-6355518(+) (11)	NA	NA	NA	AT1G01490.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g38870.1	"heavy metal-associated domain containing protein, expressed"	AC235567_30.1	Heavy metal transport/detoxification protein AC235567.1 97384-100523 F EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.3504.1.S1_at	A	A1MS	POPTR_0003s08460	POPTR_0003s08460 (10)	scaffold_3:9876934-9877469(-) (10)	NA	Q9FJR0	Regulator of nonsense transcripts 1 homolog	AT5G47010.1	"RNA helicase, putative "	LOC_Os07g31340.1	"regulator of nonsense transcripts 1, putative, expressed"	Medtr5g014030.1	"Type III restriction enzyme, res subunit "	"GO:0000184|""nuclear-transcribed mRNA catabolic process, nonsense-mediated decay""||GO:0044265|cellular macromolecule catabolic process"	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0008270|zinc ion binding	GO:0005737|cytoplasm
Ptp.3505.1.S1_at	A	A1MS	POPTR_0011s14710	POPTR_0011s14710 (11)	scaffold_11:17015747-17015880(+) (11)	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3506.1.S1_at	A	A1TS	POPTR_0005s11200	POPTR_0005s11200 (11)	scaffold_5:8124027-8125650(-) (11)	NA	NA	NA	AT4G35920.2	PLAC8 family protein 	LOC_Os03g06120.3	"PLAC8 family protein, expressed"	Medtr5g022570.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3507.1.S1_s_at	A	A1TS	POPTR_0002s10700	POPTR_0002s10700 (11)	scaffold_2:7766142-7766186(-) (11)	NA	Q9LJM4	Receptor-like protein kinase HAIKU2	AT1G09970.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os12g43640.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.3508.1.S1_at	A	A1TS	POPTR_0015s04720	POPTR_0015s04720 (10)	scaffold_15:4933591-4934793(-) (10)	NA	Q46888	Uncharacterized oxidoreductase ygbJ	AT1G18270.2	ketose-bisphosphate aldolase class-II family protein 	LOC_Os06g14740.1	"NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed"	Medtr6g083360.1	"Ketose-bisphosphate aldolase, class-II; 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal-like; ; "	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0008270|zinc ion binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity||GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.3509.1.S1_s_at	A	A1TS	POPTR_0011s10500	POPTR_0011s10500 (11)	scaffold_11:12993967-12994455(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g14940.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
Ptp.351.1.S1_at	A	A1TS	POPTR_0002s12940	POPTR_0002s12940 (10)	scaffold_2:9613105-9613247(-) (10)	NA	Q9LT08	26S proteasome non-ATPase regulatory subunit 14	AT5G23540.1	Mov34/MPN/PAD-1 family protein 	LOC_Os05g30800.1	"26S proteasome non-ATPase regulatory subunit 14, putative, expressed"	Medtr2g021360.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3510.1.S1_at	A	A2TS	POPTR_0007s02720	POPTR_1698s00200 (11)//POPTR_0007s02720 (11)	scaffold_1698:53-443(-) (11)//scaffold_7:1584924-1585314(+) (11)	NA	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os07g35260.2	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr2g103510.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3511.1.S1_s_at	A	A1TS	POPTR_0002s11210	POPTR_0002s11210 (11)	scaffold_2:8279188-8279490(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3512.1.S1_s_at	A	A2TS	POPTR_0017s13650	POPTR_0017s13650 (11)//POPTR_1731s00200 (11)	scaffold_17:13749501-13750223(+) (11)//scaffold_1731:90-812(+) (11)	NA	Q8LFJ9	GDSL esterase/lipase 7	AT5G15720.1	GDSL-motif lipase 7 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g022220.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.3513.1.S1_at	A	A1TS	POPTR_0015s11730	POPTR_0015s11730 (11)	scaffold_15:12288338-12288784(+) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr3g151260.1	RNA recognition motif 2 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3515.1.S1_s_at	A	A2TS	POPTR_0003s18620	POPTR_0003s18620 (11)//POPTR_0001s07480 (9)	scaffold_1:5613548-5615095(-) (9)//scaffold_3:17625961-17627959(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr4g023350.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.3516.1.S1_at	A	A1MS	POPTR_0011s09270	POPTR_0011s09270 (9)	scaffold_11:11491726-11492219(-) (9)	NA	NA	NA	AT4G26980.1	RNI-like superfamily protein 	LOC_Os06g46590.2	expressed protein	Medtr5g100310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.352.1.S1_at	A	A1TS	POPTR_0003s12960	POPTR_0003s12960 (11)	scaffold_3:13374819-13375608(-) (11)	NA	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.3520.1.A1_s_at	A	A1TS	POPTR_0015s13060	POPTR_0015s13060 (11)	scaffold_15:13180964-13181909(+) (11)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3521.1.S1_at	A	A1TS	POPTR_0011s17280	POPTR_0011s17280 (10)	scaffold_11:18867113-18868613(+) (10)	NA	Q5ZMQ9	Peroxisomal targeting signal 1 receptor	AT5G56290.1	peroxin 5 	LOC_Os08g39080.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g010600.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3522.1.S1_s_at	A	A1TS	POPTR_0006s05130	POPTR_0006s05130 (11)	scaffold_6:3565893-3566579(-) (11)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3523.1.S1_s_at	A	A1TS	POPTR_0015s13360	POPTR_0015s13360 (11)	scaffold_15:13356981-13357258(+) (11)	NA	Q4FE45	E3 ubiquitin-protein ligase XBAT33	AT5G07270.1	XB3 ortholog 3 in Arabidopsis thaliana 	LOC_Os10g37730.1	"pollen ankyrin, putative, expressed"	AC146807_5.1	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3524.1.S1_at	A	A1MS	POPTR_0006s25200	POPTR_0006s25200 (9)	scaffold_290:7425-7457(-) (9)//scaffold_6:23624413-23624445(+) (9)	NA	Q54J73	Poly(A) polymerase	AT4G32850.6	nuclear poly(a) polymerase 	LOC_Os06g36360.4	expressed protein	Medtr3g128240.1	"DNA polymerase, beta-like region; Poly(A) polymerase, RNA-binding region; Poly(A) polymerase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
Ptp.3525.1.S1_s_at	A	A1TS	POPTR_0002s26430	POPTR_0002s26430 (9)	scaffold_2:23417297-23417777(+) (9)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3526.1.S1_at	A	A1TS	POPTR_0003s06890	POPTR_0003s06890 (11)	scaffold_3:8424450-8425498(-) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3529.1.S1_at	A	A1TS	POPTR_0019s09450	POPTR_0019s09450 (11)	scaffold_19:10984131-10985541(-) (11)	NA	P90648	Myosin heavy chain kinase B	AT1G21651.1	zinc ion binding 	LOC_Os05g34880.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr1g025560.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.353.2.S1_a_at	A	A1TS	POPTR_0001s33730	POPTR_0001s33730 (11)	scaffold_1:31902854-31903209(-) (11)	NA	P49730	Ribonucleoside-diphosphate reductase small chain	AT3G27060.1	Ferritin/ribonucleotide reductase-like family protein 	LOC_Os06g03720.1	"ribonucleoside-diphosphate reductase small chain, putative, expressed"	NA	NA	GO:0009186|deoxyribonucleoside diphosphate metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0004748|ribonucleoside-diphosphate reductase activity	NA
Ptp.3530.1.S1_at	A	A1TS	POPTR_0006s05980	POPTR_0006s05980 (11)	scaffold_6:4232787-4233114(+) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr8g122340.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3536.1.S1_s_at	A	A1TS	POPTR_0001s10580	POPTR_0001s10580 (11)	scaffold_1:8232630-8232848(+) (11)	NA	NA	NA	AT4G23840.1	Leucine-rich repeat (LRR) family protein 	LOC_Os05g12140.1	"Leucine Rich Repeat family protein, expressed"	Medtr3g058830.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
Ptp.3537.1.S1_s_at	A	A1TS	POPTR_0003s19220	POPTR_0003s19220 (11)	scaffold_3:18013533-18013974(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g124870.1	"Auxin-induced protein 5NG4, related "	NA	NA	GO:0016020|membrane
Ptp.3539.1.S1_at	A	A1TS	POPTR_0005s28040	POPTR_0005s28040 (11)	scaffold_5:25439602-25439852(+) (11)	NA	NA	NA	AT1G21000.2	PLATZ transcription factor family protein 	LOC_Os06g41930.2	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3539.1.S1_x_at	A	A1TS	POPTR_0005s28040	POPTR_0005s28040 (11)	scaffold_5:25439313-25439852(+) (11)	NA	NA	NA	AT1G21000.2	PLATZ transcription factor family protein 	LOC_Os06g41930.2	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.354.1.S1_at	A	A1TS	POPTR_0008s09520	POPTR_0008s09520 (10)	scaffold_8:5891525-5892674(-) (10)	NA	Q5R8F6	UPF0420 protein C16orf58 homolog	AT1G13770.1	"Protein of unknown function, DUF647 "	LOC_Os03g11500.1	"DUF647 domain containing protein, putative, expressed"	Medtr5g047400.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3541.1.S1_at	A	A1TA	POPTR_0003s15810	POPTR_0003s15810 (9)	scaffold_3:15515619-15516117(-) (9)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G47910.1	respiratory burst oxidase homologue D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
Ptp.355.1.A1_at	A	A1TS	POPTR_0015s07790	POPTR_0015s07790 (10)	scaffold_15:9079144-9080629(-) (10)	NA	O14099	Uncharacterized RING finger protein C2F3.16	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
Ptp.3551.1.S1_a_at	A	A1TS	POPTR_0012s05750	POPTR_0012s05750 (11)	scaffold_12:5557980-5558480(-) (11)	NA	Q3U4B4	Lipase member N	AT1G73920.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g33784.1	"lipase family protein, putative, expressed"	Medtr4g158530.1	AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
Ptp.3552.1.S1_s_at	A	A1TS	POPTR_0006s04870	POPTR_0006s04870 (9)	scaffold_6:3396574-3396854(-) (9)	NA	O81644	Villin-2	AT2G41740.1	villin 2 	LOC_Os03g24220.1	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.3557.1.S1_s_at	A	A1TS	POPTR_0006s23290	POPTR_0006s23290 (11)	scaffold_6:22052670-22053041(+) (11)	NA	O76094	Signal recognition particle 72 kDa protein	AT1G67680.1	SRP72 RNA-binding domain 	LOC_Os01g66560.1	"signal recognition particle 72 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
Ptp.3558.1.A1_at	A	A1TS	POPTR_0006s06100	POPTR_0006s06100 (10)	scaffold_6:4339785-4340010(+) (10)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.2	glucuronidase 3 	LOC_Os06g08090.2	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
Ptp.3559.1.A1_at	A	A1TS	POPTR_0006s09860	POPTR_0006s09860 (11)	scaffold_6:7252904-7253414(+) (11)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3561.1.S1_at	A	A1TS	POPTR_0010s21780	POPTR_0010s21780 (11)	scaffold_10:18915853-18918053(-) (11)	NA	P28563	Dual specificity protein phosphatase 1	AT3G55270.1	mitogen-activated protein kinase phosphatase 1 	LOC_Os05g02500.1	"dual specificity protein phosphatase, putative, expressed"	Medtr3g102500.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.3563.1.S1_s_at	A	A1TS	POPTR_0003s04120	POPTR_0003s04120 (11)	scaffold_3:4780743-4781271(+) (11)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3565.1.S1_at	A	A1MA	POPTR_0007s06980	POPTR_0007s06980 (10)	scaffold_7:5334765-5335164(-) (10)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr1g124770.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3566.1.S1_at	A	A1TS	POPTR_0012s14750	POPTR_0012s14750 (11)	scaffold_12:14517812-14518338(-) (11)	NA	NA	NA	AT5G44860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os01g58620.1	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3567.1.S1_s_at	A	A1TS	POPTR_0003s21690	POPTR_0003s21690 (11)	scaffold_3:19746284-19746859(-) (11)	NA	Q9LXT9	Callose synthase 3	AT5G13000.1	glucan synthase-like 12 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr7g005640.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.3569.1.S1_at	A	A1TS	POPTR_0015s01020	POPTR_0015s01020 (9)	scaffold_15:594613-595095(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G46620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g02330.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g123370.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
Ptp.357.1.S1_at	A	A1TS	POPTR_0009s04900	POPTR_0009s04900 (10)	scaffold_9:5150125-5151825(+) (10)	NA	A8AI59	Flavoprotein wrbA	AT5G58800.2	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g078480.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.3570.1.S1_s_at	A	A2TS	POPTR_0001s11440	POPTR_0001s11440 (11)//POPTR_0003s14750 (11)	scaffold_1:8901814-8901951(+) (11)//scaffold_3:14747773-14747910(+) (11)	NA	Q8BUV8	Protein GPR107	AT5G42090.1	Lung seven transmembrane receptor family protein 	LOC_Os06g04130.2	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr3g109390.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
Ptp.3571.1.S1_at	A	A1TS	POPTR_0001s12740	POPTR_0001s12740 (9)	scaffold_1:9868848-9869053(-) (9)	NA	NA	NA	AT5G32450.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g54870.2	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.3572.1.S1_s_at	A	A1TS	POPTR_0011s15140	POPTR_0011s15140 (11)	scaffold_11:17301598-17302121(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G75500.2	Walls Are Thin 1 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g081140.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3577.1.S1_at	A	A1TS	POPTR_0005s28160	POPTR_0005s28160 (11)	scaffold_5:25512708-25513245(-) (11)	POPTR_0002s00280 (7)	Q8RXL8	Uncharacterized membrane protein At1g06890	AT1G21070.1	Nucleotide-sugar transporter family protein 	LOC_Os07g39280.1	"transporter-related, putative, expressed"	Medtr4g141240.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.358.1.S1_s_at	A	A1TS	POPTR_0002s02480	POPTR_0002s02480 (11)	scaffold_2:1398872-1399088(-) (11)	NA	NA	NA	AT1G75710.1	C2H2-like zinc finger protein 	LOC_Os04g02510.1	"ZOS4-01 - C2H2 zinc finger protein, expressed"	Medtr1g030900.1	"Zinc finger, C2H2-type "	GO:0009405|pathogenesis||GO:0051704|multi-organism process	GO:0019855|calcium channel inhibitor activity||GO:0008270|zinc ion binding	GO:0005622|intracellular||GO:0005576|extracellular region
Ptp.3581.1.S1_at	A	A1TS	POPTR_0006s07650	POPTR_0006s07650 (10)	scaffold_6:5575978-5576444(-) (10)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
Ptp.3585.1.S1_s_at	A	A1TS	POPTR_0005s17180	POPTR_0005s17180 (11)	scaffold_5:14347219-14347552(-) (11)	NA	Q9C9Q8	Probable pectin methyltransferase QUA2	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr5g072950.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.3586.1.S1_at	A	A1TS	POPTR_0019s09540	POPTR_0019s09540 (10)	scaffold_19:11130970-11131378(-) (10)	NA	Q93VV5	Probable peptide/nitrate transporter At1g59740	AT1G59740.1	Major facilitator superfamily protein 	LOC_Os11g12740.1	"peptide transporter PTR2, putative, expressed"	Medtr2g005060.1	"TGF-beta receptor, type I/II extracellular region; ABC transporter related "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3587.1.A1_at	A	A1TS	POPTR_0004s22520	POPTR_0004s22520 (11)	scaffold_4:21387476-21387782(-) (11)	NA	Q56WF8	Serine carboxypeptidase-like 48	AT3G45010.1	serine carboxypeptidase-like 48 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g113720.2	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3587.1.A1_s_at	A	A1TS	POPTR_0004s22520	POPTR_0004s22520 (11)	scaffold_4:21387938-21388062(-) (11)	NA	Q56WF8	Serine carboxypeptidase-like 48	AT3G45010.1	serine carboxypeptidase-like 48 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g113720.2	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3588.1.S1_at	A	A1TS	POPTR_0008s18280	POPTR_0008s18280 (9)	scaffold_8:12235330-12235717(-) (9)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.359.2.S1_a_at	A	A1TS	POPTR_0008s06080	POPTR_0008s06080 (11)	scaffold_8:3592201-3592691(-) (11)	NA	Q8W115	PRA1 family protein A3	AT3G11402.2	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os05g38160.1	"prenylated rab acceptor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3590.1.A1_s_at	A	A1TS	POPTR_0013s11670	POPTR_0013s11670 (11)	scaffold_13:12341975-12342651(-) (11)	NA	NA	NA	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.3591.1.A1_s_at	A	A1TS	POPTR_0004s16200	POPTR_0004s16200 (11)	scaffold_4:16624592-16624822(+) (11)	NA	NA	NA	AT1G63850.1	BTB/POZ domain-containing protein 	LOC_Os03g51380.1	expressed protein	Medtr4g095540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3598.1.A1_at	A	A1TS	POPTR_0001s33790	POPTR_0001s33790 (11)	scaffold_1:31956866-31957231(+) (11)	NA	P37707	B2 protein	AT3G27090.1	DCD (Development and Cell Death) domain protein 	LOC_Os05g41930.3	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.36.1.S1_s_at	A	A3TS	POPTR_0002s20890	POPTR_0483s00220 (11)//POPTR_0002s20890 (11)//POPTR_0483s00200 (10)	scaffold_2:17113635-17113882(-) (11)//scaffold_483:319-566(+) (11)//scaffold_483:14584-14831(+) (11)	NA	P42760	Glutathione S-transferase 1	AT1G02930.2	glutathione S-transferase 6 	LOC_Os01g27360.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3600.1.S1_at	A	A1TS	POPTR_0016s07910	POPTR_0016s07910 (11)	scaffold_16:5739004-5739239(+) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37970.1	cinnamyl alcohol dehydrogenase 6 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3600.1.S1_s_at	A	A1TS	POPTR_0016s07910	POPTR_0016s07910 (11)	scaffold_16:5739261-5739560(+) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37970.1	cinnamyl alcohol dehydrogenase 6 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3605.1.A1_s_at	A	A1TS	POPTR_0016s06000	POPTR_0016s06000 (11)	scaffold_16:3924781-3925285(-) (11)	NA	Q39147	DNA-3-methyladenine glycosylase	AT3G12040.1	DNA-3-methyladenine glycosylase (MAG) 	LOC_Os02g53430.1	"DNA-3-methyladenine glycosylase, putative, expressed"	Medtr7g112240.1	Methylpurine-DNA glycosylase (MPG) 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003905|alkylbase DNA N-glycosylase activity	NA
Ptp.3607.1.S1_at	A	A1MS	POPTR_0008s12090	POPTR_0008s12090 (9)	scaffold_8:7802340-7802931(-) (9)	NA	NA	NA	AT1G68440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr5g067220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3608.1.S1_s_at	A	A1TS	POPTR_0001s31220	POPTR_0001s31220 (11)	scaffold_1:29549904-29550182(-) (11)	NA	O65922	Caffeoyl-CoA O-methyltransferase 2	AT4G34050.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
Ptp.361.1.S1_at	A	A1TS	POPTR_0008s14580	POPTR_0008s14580 (10)	scaffold_8:9666161-9666597(+) (10)	NA	Q0WPE9	Nucleobase-ascorbate transporter 7	AT1G60030.1	nucleobase-ascorbate transporter 7 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g073630.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3611.1.S1_at	A	A1TS	POPTR_0014s17930	POPTR_0014s17930 (10)	scaffold_14:14468152-14468682(-) (10)	NA	Q9FRK5	Uncharacterized membrane protein At1g75140	AT1G75140.1	unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19370.1); Has 51 Blast hits to 49 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os06g02480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3612.1.S1_s_at	A	A1TS	POPTR_0001s12530	POPTR_0001s12530 (11)	scaffold_1:9717672-9718591(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr7g102590.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.3616.1.S1_s_at	A	A1TS	POPTR_0606s00210	POPTR_0606s00210 (11)	scaffold_606:7731-8061(+) (11)	NA	O81488	PHD finger protein At5g26210	AT2G02470.1	alfin-like 6 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3619.1.S1_at	A	A1TS	POPTR_0001s04580	POPTR_0001s04580 (9)	scaffold_1:3570328-3571576(-) (9)	NA	NA	NA	AT5G19860.1	"Protein of unknown function, DUF538 "	LOC_Os03g48710.1	expressed protein	Medtr4g133910.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.362.1.A1_s_at	A	A1TS	POPTR_0013s11910	POPTR_0013s11910 (11)	scaffold_13:12535708-12537132(-) (11)	NA	NA	NA	AT1G34355.1	forkhead-associated (FHA) domain-containing protein  	LOC_Os11g07050.1	"FHA domain containing protein, putative, expressed"	Medtr1g122320.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3620.1.S1_s_at	A	A1TS	POPTR_0025s00560	POPTR_0025s00560 (11)	scaffold_25:250847-251079(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.3622.1.S1_s_at	A	A1TS	POPTR_0011s05610	POPTR_0011s05610 (11)	scaffold_11:5584076-5584356(-) (11)	NA	Q688X9	Protein DEHYDRATION-INDUCED 19	NA	NA	LOC_Os05g48800.2	"drought induced 19 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3627.1.A1_at	A	A1TS	POPTR_0014s08310	POPTR_0014s08310 (11)	scaffold_14:6177291-6177673(+) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT4G00330.1	calmodulin-binding receptor-like cytoplasmic kinase 2 	LOC_Os03g05470.1	"tyrosine protein kinase domain containing protein, putative, expressed"	AC235567_9.1	"Serine/threonine protein kinase, active site AC235567.1 39723-36116 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3628.1.S1_s_at	A	A1TS	POPTR_0018s01730	POPTR_0018s01730 (10)	scaffold_18:1575585-1577041(-) (10)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3628.2.S1_s_at	A	A1TS	POPTR_0018s01730	POPTR_0018s01730 (11)	scaffold_18:1578207-1579242(-) (11)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3629.1.S1_at	A	A1TS	POPTR_0010s04340	POPTR_0010s04340 (10)	scaffold_10:5415921-5416689(-) (10)	NA	NA	NA	AT2G02590.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 405 Blast hits to 405 proteins in 185 species: Archae - 65; Bacteria - 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). 	LOC_Os03g58620.1	"small multi-drug export protein, putative, expressed"	Medtr5g038640.1	Putative small multi-drug export 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3635.1.S1_s_at	A	A1TS	POPTR_0012s03610	POPTR_0012s03610 (10)	scaffold_12:2841599-2841819(+) (10)	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.3636.1.S1_at	A	A1TS	POPTR_0010s17150	POPTR_0010s17150 (11)	scaffold_10:15871180-15871625(+) (11)	NA	Q9SEL5	Vesicle transport v-SNARE 12	AT1G26670.1	Vesicle transport v-SNARE family protein 	LOC_Os01g51120.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr5g045560.1	Vesicle transport v-SNARE 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane
Ptp.3637.1.S1_at	A	A1TS	POPTR_0004s04840	POPTR_0004s04840 (10)	scaffold_4:3587276-3587639(-) (10)	NA	NA	NA	AT1G28420.1	homeobox-1 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr2g018010.1	DDT; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3639.1.S1_at	A	A1TS	POPTR_0004s15200	POPTR_0004s15200 (10)	scaffold_4:15848651-15849145(-) (10)	NA	Q9FX85	Peroxidase 10	AT1G49570.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr5g017850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.3639.2.S1_a_at	A	A1TS	POPTR_0004s15200	POPTR_0004s15200 (11)	scaffold_4:15850478-15850682(-) (11)//scaffold_9:9256729-9256839(-) (9)	POPTR_0009s10960 (8)	Q9FX85	Peroxidase 10	AT1G49570.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr5g017850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.3639.2.S1_at	A	A1MS	POPTR_0004s15200	POPTR_0004s15200 (11)	scaffold_4:15850154-15850438(-) (11)	NA	Q9FX85	Peroxidase 10	AT1G49570.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr5g017850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.364.2.S1_a_at	A	A1TS	POPTR_0011s11970	POPTR_0011s11970 (11)	scaffold_11:14763734-14764011(-) (11)	NA	Q54ID0	Cytochrome c oxidase copper chaperone	AT3G15352.1	cytochrome c oxidase 17 	LOC_Os09g25314.1	"cytochrome c oxidase copper chaperone, putative, expressed"	Medtr2g100210.1	Cytochrome C oxidase copper chaperone 	GO:0006825|copper ion transport	GO:0016531|copper chaperone activity	GO:0005758|mitochondrial intermembrane space
Ptp.3641.1.S1_at	A	A1TS	POPTR_0008s03480	POPTR_0008s03480 (11)	scaffold_8:1855463-1856039(+) (11)	NA	P32826	Serine carboxypeptidase-like 49	AT3G10410.1	SERINE CARBOXYPEPTIDASE-LIKE 49 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g068630.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3642.1.A1_at	A	A1TS	POPTR_0018s13040	POPTR_0018s13040 (11)	scaffold_18:13502267-13502576(-) (11)	NA	NA	NA	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr8g120620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3642.1.A1_s_at	A	A2TS	POPTR_0018s13040	POPTR_0018s13040 (11)//POPTR_0018s13020 (9)	scaffold_18:13488480-13488938(-) (9)//scaffold_18:13502403-13502872(-) (11)	NA	NA	NA	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr8g120620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3644.1.S1_at	A	A1TS	POPTR_0009s11080	POPTR_0009s11080 (11)	scaffold_9:9325773-9325841(-) (11)	NA	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3644.1.S1_s_at	A	A1TS	POPTR_0009s11080	POPTR_0009s11080 (11)	scaffold_9:9325857-9326477(-) (11)	POPTR_0009s11090 (7)	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3644.1.S1_x_at	A	A1TS	POPTR_0009s11080	POPTR_0009s11080 (11)	scaffold_9:9325774-9326620(-) (11)	POPTR_0009s11090 (8)	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3646.1.S1_s_at	A	A1TS	POPTR_0006s04170	POPTR_0006s04170 (11)	scaffold_6:2830126-2831217(+) (11)	NA	Q9SU56	"L-galactono-1,4-lactone dehydrogenase, mitochondrial"	AT3G47930.1	"L-galactono-1,4-lactone dehydrogenase "	LOC_Os11g04740.1	"FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed"	Medtr1g068880.1	Galactonolactone dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3648.1.S1_at	A	A1TS	POPTR_0001s16750	POPTR_0001s16750 (10)	scaffold_1:13531606-13531965(+) (10)	NA	O65351	Subtilisin-like protease	AT3G14067.1	Subtilase family protein 	LOC_Os02g53860.1	"OsSub22 - Putative Subtilisin homologue, expressed"	Medtr8g025260.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.3651.1.S1_s_at	A	A1TS	POPTR_0014s12790	POPTR_0014s12790 (11)	scaffold_14:9422889-9423473(-) (11)	NA	Q110D7	Peptide chain release factor 1	AT3G62910.1	Peptide chain release factor 1 	LOC_Os11g43600.1	"peptide chain release factor protein, putative, expressed"	Medtr7g130010.1	Peptide chain release factor 1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
Ptp.3653.1.S1_at	A	A1TS	POPTR_0002s08870	POPTR_0002s08870 (11)	scaffold_2:6236954-6237769(+) (11)	NA	Q8L751	Oxysterol-binding protein-related protein 1C	AT4G08180.2	OSBP(oxysterol binding protein)-related protein 1C 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
Ptp.3655.2.S1_a_at	A	A1TS	POPTR_0014s16870	POPTR_0014s16870 (11)	scaffold_14:12989617-12990534(-) (11)	NA	Q9SSE5	Zinc finger protein CONSTANS-LIKE 9	AT3G07650.4	CONSTANS-like 9 	LOC_Os06g19444.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr3g106670.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3656.1.S1_at	A	A1TA	POPTR_0007s13690	POPTR_0007s13690 (10)	scaffold_7:13707278-13707536(-) (10)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr8g090480.1	"LRR receptor-like serine/threonine-protein kinase FLS2 precursor, related "	NA	GO:0005515|protein binding	NA
Ptp.3658.2.A1_at	A	A1TS	POPTR_0003s19130	POPTR_0003s19130 (10)	scaffold_3:17932575-17932674(+) (10)	NA	A0JPP1	Dr1-associated corepressor	AT3G12480.1	"nuclear factor Y, subunit C11 "	LOC_Os05g41450.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g044480.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.3659.1.A1_s_at	A	A1TS	POPTR_0014s09150	POPTR_0014s09150 (10)	scaffold_14:6787700-6788189(+) (10)	NA	NA	NA	AT1G01430.1	TRICHOME BIREFRINGENCE-LIKE 25 	LOC_Os05g12380.1	expressed protein	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3660.1.S1_at	A	A1TS	POPTR_0001s09810	POPTR_0001s09810 (9)	scaffold_1:7552580-7553027(-) (9)	NA	Q8LPH6	Transcription factor MYB86	AT1G63910.1	myb domain protein 103 	LOC_Os08g05520.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g010100.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3662.1.S1_at	A	A1TS	POPTR_0018s13010	POPTR_0018s13010 (11)	scaffold_18:13485060-13485348(+) (11)	NA	Q8R139	Equilibrative nucleoside transporter 4	AT1G02630.1	Nucleoside transporter family protein 	LOC_Os08g10450.1	"nucleoside transporter, putative, expressed"	Medtr8g120640.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
Ptp.3665.1.S1_s_at	A	A1TS	POPTR_0016s01980	POPTR_0016s01980 (11)	scaffold_16:907826-908197(-) (11)	NA	Q9LIE5	Protein FAR-RED ELONGATED HYPOCOTYL 3	AT3G22170.2	far-red elongated hypocotyls 3 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3670.1.S1_at	A	A1TS	POPTR_0002s08560	POPTR_0002s08560 (11)	scaffold_2:5980688-5981214(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G21890.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097580.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.3670.2.S1_at	A	A1MS	POPTR_0002s08560	POPTR_0002s08560 (11)	scaffold_2:5982280-5982449(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G21890.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097580.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.3673.1.S1_s_at	A	A1TS	POPTR_0014s08180	POPTR_0014s08180 (11)	scaffold_14:6072595-6072881(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.2	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3674.1.S1_s_at	A	A1TS	POPTR_0006s01310	POPTR_0006s01310 (11)	scaffold_6:758699-761303(+) (11)	NA	Q7SXW4	Transmembrane protein 111	AT4G12590.1	"Protein of unknown function DUF106, transmembrane "	LOC_Os09g32220.1	"pob, putative, expressed"	Medtr1g093450.1	"Protein of unknown function DUF850, transmembrane eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3679.1.S1_s_at	A	A1TS	POPTR_0014s14210	POPTR_0014s14210 (11)	scaffold_14:10405893-10407741(-) (11)	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr7g099400.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
Ptp.368.1.S1_s_at	A	A1TS	POPTR_0009s11800	POPTR_0009s11800 (11)	scaffold_9:9724959-9725339(+) (11)	NA	Q0WW26	Coatomer subunit gamma	AT4G34450.1	"coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative "	LOC_Os07g10150.1	"coatomer subunit gamma-2, putative, expressed"	Medtr3g159510.1	"Adaptin, N-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; ; "	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat||GO:0005798|Golgi-associated vesicle
Ptp.3683.1.A1_at	A	A1TS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13976348-13976409(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3683.2.S1_at	A	A1MS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13975777-13975937(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3683.2.S1_s_at	A	A1TS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13976002-13976106(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3686.1.S1_at	A	A1TS	POPTR_0012s10200	POPTR_0012s10200 (9)	scaffold_12:11028445-11028663(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3687.1.A1_s_at	A	A1TS	POPTR_0001s34750	POPTR_0001s34750 (11)	scaffold_1:32986193-32986295(-) (11)	NA	Q93X17	Snakin-2	AT5G14920.1	Gibberellin-regulated family protein 	LOC_Os04g39110.1	"GASR4 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr6g008660.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.369.1.S1_at	A	A1TS	POPTR_0001s14420	POPTR_0001s14420 (9)	scaffold_1:11311981-11312216(+) (9)	NA	NA	NA	AT1G04770.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g43040.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g064920.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3691.1.S1_at	A	A1TS	POPTR_0016s04530	POPTR_0016s04530 (9)	scaffold_16:2661209-2661525(-) (9)	NA	NA	NA	AT3G58000.1	VQ motif-containing protein 	LOC_Os04g57030.1	"VQ domain containing protein, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3693.1.S1_at	A	A1TS	POPTR_0014s11270	POPTR_0014s11270 (11)	scaffold_14:8389776-8390619(+) (11)	NA	Q9NPF5	DNA methyltransferase 1-associated protein 1	AT2G47210.1	myb-like transcription factor family protein 	LOC_Os05g46330.1	"MYB family transcription factor, putative, expressed"	Medtr7g133340.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.37.1.S1_at	A	A1TS	POPTR_0003s09110	POPTR_0003s09110 (10)	scaffold_3:10434885-10437360(+) (10)	NA	Q8H100	Probable ADP-ribosylation factor GTPase-activating protein AGD8	AT4G17890.1	ARF-GAP domain 8 	LOC_Os03g63710.1	"GTPase-activating protein, putative, expressed"	Medtr8g078470.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.3700.1.A1_at	A	A1TS	POPTR_0004s19550	POPTR_0004s19550 (9)	scaffold_4:19359440-19359805(+) (9)	NA	NA	NA	AT3G07350.1	Protein of unknown function (DUF506)  	LOC_Os11g25040.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr8g012610.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3703.1.S1_s_at	A	A1TS	POPTR_0013s14170	POPTR_0013s14170 (11)	scaffold_13:14468251-14468486(-) (11)	NA	Q8GZA8	Protein ULTRAPETALA 1	AT4G28190.1	"Developmental regulator, ULTRAPETALA "	LOC_Os01g57240.1	expressed protein	AC229695_17.1	"Protein ULTRAPETALA 2, putative AC229695.5 69003-71368 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3704.1.S1_at	A	A1TS	POPTR_0009s08730	POPTR_0009s08730 (11)	scaffold_9:7888659-7889176(-) (11)	NA	NA	NA	AT1G10020.1	Protein of unknown function (DUF1005) 	LOC_Os07g04150.1	"stress-induced protein, putative, expressed"	Medtr5g005600.1	Protein of unknown function DUF1005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3705.1.A1_s_at	A	A1TS	POPTR_0011s11620	POPTR_0011s11620 (11)	scaffold_11:14416635-14417122(+) (11)	NA	O80340	Ethylene-responsive transcription factor 4	AT3G15210.1	ethylene responsive element binding factor 4 	LOC_Os05g29810.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3708.1.S1_s_at	A	A1TS	POPTR_0001s13670	POPTR_0001s13670 (11)	scaffold_1:10765085-10765638(+) (11)	NA	NA	NA	AT1G27290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g32960.2	expressed protein	Medtr3g104180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.371.1.S1_at	A	A1TS	POPTR_0013s14760	POPTR_0013s14760 (11)	scaffold_13:14903064-14903137(-) (11)	POPTR_0013s14770 (7)	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.371.1.S1_x_at	A	A1TS	POPTR_0013s14760	POPTR_0013s14760 (10)	scaffold_13:14903064-14910194(-) (11)	POPTR_0013s14770 (7)	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3710.1.S1_at	A	A1MS	POPTR_0001s33270	POPTR_0001s33270 (9)	scaffold_1:31465305-31465750(-) (9)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.3711.1.S1_s_at	A	A1TS	POPTR_0011s03350	POPTR_0011s03350 (11)	scaffold_11:3502815-3503286(+) (11)	NA	NA	NA	AT1G61740.1	Sulfite exporter TauE/SafE family protein 	LOC_Os01g57710.1	"membrane protein, putative, expressed"	Medtr2g010790.1	Protein of unknown function DUF81 	NA	NA	GO:0016021|integral to membrane
Ptp.3712.1.S1_at	A	A1TS	POPTR_0018s03430	POPTR_0018s03430 (11)	scaffold_18:3012079-3012231(+) (11)	NA	Q9SJA7	Probable sarcosine oxidase	AT2G24580.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g32290.2	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr3g133200.1	NAD-binding site 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3713.1.S1_s_at	A	A1TS	POPTR_0011s12360	POPTR_0011s12360 (11)	scaffold_11:15083519-15083939(-) (11)	NA	NA	NA	AT4G27430.2	COP1-interacting protein 7 	LOC_Os07g26440.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3714.1.S1_s_at	A	A1TS	POPTR_0005s27510	POPTR_0005s27510 (11)	scaffold_5:25136636-25136698(-) (11)	NA	P93006	Probable protein phosphatase 2C 27	AT2G33700.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr3g160100.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3714.2.A1_s_at	A	A1TS	POPTR_0002s00880	POPTR_0002s00880 (11)	scaffold_2:415394-415664(+) (11)	NA	P93006	Probable protein phosphatase 2C 27	AT2G33700.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr3g160100.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3716.1.S1_s_at	A	A1TS	POPTR_0002s06620	POPTR_0002s06620 (11)	scaffold_2:4437839-4438093(-) (11)	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3716.2.S1_s_at	A	A1MS	POPTR_0002s06620	POPTR_0002s06620 (11)	scaffold_2:4438421-4438730(-) (11)	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.372.1.A1_at	A	A1TS	POPTR_0016s12090	POPTR_0016s12090 (10)	scaffold_16:11352647-11352870(-) (10)	NA	Q8L9T7	Histidine-containing phosphotransfer protein 5	AT1G03430.1	histidine-containing phosphotransfer factor 5 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr1g111080.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
Ptp.3720.1.S1_at	A	A1TS	POPTR_0007s04420	POPTR_0007s04420 (10)	scaffold_7:2736039-2736379(-) (10)	NA	Q55EX9	Putative methyltransferase DDB_G0268948	AT5G10830.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g40660.1	"methyltransferase, putative, expressed"	Medtr7g107220.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.3722.1.S1_s_at	A	A1TS	POPTR_0009s08380	POPTR_0009s08380 (11)	scaffold_9:7693590-7694393(-) (11)	NA	NA	NA	AT5G64460.8	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g121830.1	"phosphoglycerate mutase-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3723.1.S1_at	A	A1TS	POPTR_0019s08450	POPTR_0019s08450 (9)	scaffold_19:9997012-9998730(+) (9)	NA	Q42656	Alpha-galactosidase	AT3G56310.1	Melibiase family protein 	LOC_Os07g48160.1	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3724.1.S1_at	A	A1MS	POPTR_0011s02390	POPTR_0011s02390 (9)	scaffold_11:2287250-2287629(-) (9)	NA	Q54JP5	Probable ornithine aminotransferase	AT5G46180.1	ornithine-delta-aminotransferase 	LOC_Os03g44150.1	"aminotransferase, putative, expressed"	Medtr3g163620.1	"Glutamate-1-semialdehyde-2,1-aminomutase; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.3725.1.S1_at	A	A1TS	POPTR_0003s03680	POPTR_0003s03680 (10)	scaffold_3:4329943-4330243(-) (10)	NA	NA	NA	AT2G02410.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298); Has 1151 Blast hits to 1151 proteins in 597 species: Archae - 0; Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os03g62610.1	"RNA-binding protein containing a PIN domain, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3728.1.S1_s_at	A	A1TS	POPTR_0016s02090	POPTR_0016s02090 (11)	scaffold_16:1006166-1007001(+) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT3G22260.3	Cysteine proteinases superfamily protein 	LOC_Os02g07210.4	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.373.1.A1_s_at	A	A1TS	POPTR_0005s07020	POPTR_0005s07020 (11)	scaffold_5:4704800-4705304(-) (11)	NA	Q9FFN4	Beta-galactosidase 6	AT5G63800.1	Glycosyl hydrolase family 35 protein 	LOC_Os05g35360.1	"beta-galactosidase 7 precursor, putative, expressed"	Medtr3g142640.1	Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3730.1.A1_at	A	A1TS	POPTR_0003s12890	POPTR_0003s12890 (11)	scaffold_3:13330845-13331183(+) (11)	NA	Q91WL8	WW domain-containing oxidoreductase	AT4G23420.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3731.1.S1_at	A	A1TS	POPTR_0013s15440	POPTR_0013s15440 (11)	scaffold_13:15425347-15425803(-) (11)	NA	O04682	Pathogenesis-related genes transcriptional activator PTI6	AT4G27950.1	cytokinin response factor 4 	LOC_Os01g46870.1	"AP2 domain containing protein, expressed"	Medtr3g124710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3732.2.A1_at	A	A1MS	POPTR_0017s05500	POPTR_0017s05500 (10)	scaffold_17:4356623-4356834(+) (10)	NA	Q8LDW8	"Probable hydroxyacylglutathione hydrolase 2, chloroplast"	AT1G06130.2	glyoxalase 2-4 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3735.1.S1_s_at	A	A1TS	POPTR_0019s02560	POPTR_0019s02560 (11)	scaffold_19:2328613-2328844(-) (11)	NA	P29421	Alpha-amylase/subtilisin inhibitor	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.3736.1.A1_at	A	A1TS	POPTR_0016s09980	POPTR_0016s09980 (11)	scaffold_16:8105388-8106258(-) (11)	NA	NA	NA	AT3G54020.1	Arabidopsis Inositol phosphorylceramide synthase 1 	LOC_Os01g63060.1	"phosphatidic acid phosphatase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3738.1.S1_s_at	A	A1TS	POPTR_0017s09680	POPTR_0017s09680 (11)	scaffold_17:8335089-8335555(-) (11)	NA	NA	NA	AT5G40960.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104120.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3739.1.S1_s_at	A	A1TS	POPTR_0004s03620	POPTR_0004s03620 (11)	scaffold_4:2506437-2507744(-) (11)	NA	Q53FA7	Quinone oxidoreductase PIG3	AT4G21580.1	"oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os02g56180.1	"dehydrogenase, putative, expressed"	Medtr2g014170.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.374.1.A1_a_at	A	A1TS	POPTR_0011s03020	POPTR_0011s03020 (11)	scaffold_11:2999752-2999802(+) (11)	NA	O81481	Eukaryotic translation initiation factor 4E-1	AT4G18040.1	eukaryotic translation initiation factor 4E 	LOC_Os01g73880.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr2g021870.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.374.2.A1_at	A	A1MS	POPTR_0011s03020	POPTR_0011s03020 (11)	scaffold_11:2999118-2999615(+) (11)	NA	O81481	Eukaryotic translation initiation factor 4E-1	AT4G18040.1	eukaryotic translation initiation factor 4E 	LOC_Os01g73880.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr2g021870.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.3741.1.S1_s_at	A	A1TS	POPTR_0008s13030	POPTR_0008s13030 (11)	scaffold_8:8494327-8495602(+) (11)	NA	Q9SSK5	MLP-like protein 43	AT1G70890.1	MLP-like protein 43 	NA	NA	Medtr1g034930.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.3742.2.S1_s_at	A	A1TS	POPTR_0002s06730	POPTR_0002s06730 (11)	scaffold_2:4531751-4532887(-) (11)	NA	Q6NPF9	"Thioredoxin Y1, chloroplastic"	AT1G76760.1	thioredoxin Y1 	LOC_Os01g73234.2	"thioredoxin, putative, expressed"	Medtr1g125070.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.3743.1.S1_at	A	A1TS	POPTR_0004s15270	POPTR_0004s15270 (11)	scaffold_4:15939532-15939836(+) (11)	NA	Q940H6	Serine/threonine-protein kinase SRK2E	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os03g41460.1	"CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g096830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3744.1.S1_s_at	A	A1TS	POPTR_0010s01400	POPTR_0010s01400 (9)	scaffold_10:1506997-1507466(-) (10)	NA	Q8L9T5	RING-H2 finger protein ATL2	AT3G16720.1	TOXICOS EN LEVADURA 2 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3745.1.S1_at	A	A2TS	POPTR_0014s11630	POPTR_0014s11630 (11)//POPTR_0014s11680 (10)	scaffold_14:8629501-8629929(+) (11)//scaffold_14:8660958-8661383(-) (10)	NA	Q9D0D4	Probable dimethyladenosine transferase	AT2G47420.1	Ribosomal RNA adenine dimethylase family protein 	LOC_Os10g10434.1	"dimethyladenosine transferase, putative, expressed"	Medtr3g009000.1	Ribosomal RNA adenine methylase transferase 	GO:0044260|cellular macromolecule metabolic process||GO:0000154|rRNA modification	"GO:0000179|""rRNA (adenine-N6,N6-)-dimethyltransferase activity"""	NA
Ptp.3747.1.S1_s_at	A	A1TS	POPTR_0001s15400	POPTR_0001s15400 (11)	scaffold_1:12225176-12225467(+) (11)	NA	O80341	Ethylene-responsive transcription factor 5	AT5G47230.1	ethylene responsive element binding factor 5 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3749.1.S1_at	A	A1TS	POPTR_0004s24370	POPTR_0004s24370 (11)	scaffold_4:23068981-23069585(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g48640.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034700.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3750.2.S1_at	A	A1TS	POPTR_0008s02090	POPTR_0008s02090 (11)	scaffold_8:1003899-1004106(+) (11)	NA	P46301	40S ribosomal protein S25	AT2G16360.1	Ribosomal protein S25 family protein 	LOC_Os09g39540.2	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3752.1.S1_at	A	A1TS	POPTR_0001s15700	POPTR_0001s15700 (10)	scaffold_1:12514884-12515476(-) (11)	NA	Q9FGL2	Aquaporin TIP2-3	AT5G47450.1	tonoplast intrinsic protein 2;3 	LOC_Os02g44080.1	"aquaporin protein, putative, expressed"	Medtr5g012870.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3753.1.S1_s_at	A	A3TS	POPTR_0012s00900	POPTR_0012s00900 (11)//POPTR_0012s03320 (11)//POPTR_0015s05610 (11)	scaffold_12:581384-582430(-) (11)//scaffold_12:2638607-2639655(+) (11)//scaffold_15:5952585-5953864(-) (11)	NA	Q54NM9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3	AT1G34130.1	staurosporin and temperature sensitive 3-like b 	LOC_Os04g57890.1	"oligosaccharyl transferase, putative, expressed"	Medtr6g089790.1	"Oligosaccharyl transferase, STT3 subunit "	GO:0006486|protein amino acid glycosylation	GO:0004576|oligosaccharyl transferase activity	GO:0016020|membrane
Ptp.3755.1.S1_at	A	A1TS	POPTR_0003s01820	POPTR_0003s01820 (11)	scaffold_3:1697456-1697906(+) (11)	NA	Q9FY75	Potassium transporter 7	AT5G09400.1	K+ uptake permease 7 	LOC_Os07g32530.1	"potassium transporter, putative, expressed"	Medtr2g008870.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.3758.1.S1_at	A	A1TS	POPTR_0004s17950	POPTR_0004s17950 (11)	scaffold_4:17989151-17990211(+) (11)	NA	Q9ZNT3	Actin-depolymerizing factor 5	AT2G16700.1	actin depolymerizing factor 5 	LOC_Os03g13950.1	"actin-depolymerizing factor, putative, expressed"	AC233662_56.1	"Actin-binding, cofilin/tropomyosin type AC233662.1 257418-259371 F EGN_Mt090430 200"	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.3760.1.S1_at	A	A1MS	POPTR_0006s06610	POPTR_0006s06610 (10)	scaffold_6:4803145-4803650(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3762.2.S1_s_at	A	A2TS	POPTR_0001s02430	POPTR_0003s09110 (10)//POPTR_0001s02430 (10)	scaffold_1:1882533-1883528(-) (10)//scaffold_3:10433178-10434177(+) (10)	NA	Q8H100	Probable ADP-ribosylation factor GTPase-activating protein AGD8	AT4G17890.1	ARF-GAP domain 8 	LOC_Os03g63710.1	"GTPase-activating protein, putative, expressed"	Medtr8g078470.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.3764.1.A1_s_at	A	A1TS	POPTR_0002s12950	POPTR_0002s12950 (11)	scaffold_2:9622446-9622480(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
Ptp.3765.1.S1_at	A	A1TS	POPTR_0006s01680	POPTR_0006s01680 (10)	scaffold_6:1028864-1030202(-) (10)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3767.1.S1_at	A	A1MA	POPTR_0008s19310	POPTR_0008s19310 (9)	scaffold_8:13259400-13259602(+) (9)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.3772.1.S1_at	A	A1TS	POPTR_0014s14910	POPTR_0014s14910 (10)	scaffold_14:10949299-10950270(-) (10)	NA	Q9DCQ3	Vesicle transport protein GOT1A	AT1G05785.2	Got1/Sft2-like vescicle transport protein family 	LOC_Os02g39070.2	"vesicle transport protein GOT1B, putative, expressed"	Medtr7g005950.1	Got1-like protein 	GO:0016192|vesicle-mediated transport	NA	NA
Ptp.3775.2.S1_a_at	A	A1TS	POPTR_0003s05940	POPTR_0003s05940 (11)	scaffold_3:7308261-7309121(-) (11)	NA	Q8LBK6	"Monothiol glutaredoxin-S15, mitochondrial"	AT3G15660.2	glutaredoxin 4 	LOC_Os01g34620.9	"OsGrx_S15.1 - glutaredoxin subgroup II, expressed"	Medtr2g125790.1	Glutaredoxin-related protein; Glutaredoxin active site 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.3778.1.S1_s_at	A	A1TS	POPTR_0007s14510	POPTR_0007s14510 (11)	scaffold_7:14282098-14283629(-) (11)	NA	P19446	"Malate dehydrogenase, glyoxysomal"	AT2G22780.1	peroxisomal NAD-malate dehydrogenase 1 	LOC_Os12g43630.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.378.1.A1_at	A	A1TS	POPTR_0003s06940	POPTR_0003s06940 (9)	scaffold_3:8520715-8520847(-) (9)	NA	O65351	Subtilisin-like protease	AT3G14240.1	Subtilase family protein 	LOC_Os08g35090.1	"OsSub56 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.378.1.A1_s_at	A	A1TS	POPTR_0003s06940	POPTR_0003s06940 (11)	scaffold_3:8520889-8521099(-) (11)	NA	O65351	Subtilisin-like protease	AT3G14240.1	Subtilase family protein 	LOC_Os08g35090.1	"OsSub56 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3781.1.S1_at	A	A1TS	POPTR_0007s10010	POPTR_0007s10010 (10)	scaffold_7:9616435-9616958(+) (10)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3784.1.A1_s_at	A	A1TS	POPTR_0014s08990	POPTR_0014s08990 (11)	scaffold_14:6648566-6648798(+) (11)	NA	Q99089	Common plant regulatory factor 1	AT2G46270.1	G-box binding factor 3 	LOC_Os05g49420.1	"transcription factor, putative, expressed"	Medtr7g143570.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3784.2.S1_at	A	A1TS	POPTR_0014s08990	POPTR_0014s08990 (10)	scaffold_14:6645819-6647719(+) (10)	NA	Q99089	Common plant regulatory factor 1	AT2G46270.1	G-box binding factor 3 	LOC_Os05g49420.1	"transcription factor, putative, expressed"	Medtr7g143570.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3785.1.S1_a_at	A	A1TS	POPTR_0003s13920	POPTR_0003s13920 (11)	scaffold_3:14150785-14150838(+) (11)	POPTR_0001s10550 (7)	NA	NA	AT1G64385.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 66 Blast hits to 66 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os05g49750.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3786.1.S1_at	A	A1TS	POPTR_0003s13250	POPTR_0003s13250 (9)	scaffold_3:13643288-13643715(+) (9)	NA	O04609	WRKY transcription factor 22	AT4G01250.1	WRKY family transcription factor 	LOC_Os02g16540.1	"OsWRKY39v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088890.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3788.1.A1_s_at	A	A1MS	POPTR_0014s10460	POPTR_0014s10460 (11)	scaffold_14:7809151-7809443(-) (11)	NA	NA	NA	AT4G01575.1	"serine protease inhibitor, Kazal-type family protein "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3790.1.S1_s_at	A	A1TS	POPTR_0009s05140	POPTR_0009s05140 (11)	scaffold_9:5298658-5298910(+) (11)	NA	Q06716	ATP-dependent Clp protease ATP-binding subunit ClpL	AT1G07200.2	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3791.1.S1_s_at	A	A1TS	POPTR_0012s04620	POPTR_0012s04620 (11)	scaffold_12:3956341-3956617(+) (11)	NA	Q9LMS3	Laccase-1	AT1G18140.1	laccase 1 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3792.1.S1_s_at	A	A1TS	POPTR_0014s08830	POPTR_0014s08830 (11)	scaffold_14:6535487-6535740(-) (11)	NA	Q5RFQ0	rRNA-processing protein FCF1 homolog	AT2G46230.1	PIN domain-like family protein 	LOC_Os06g06410.2	"rRNA-processing protein FCF, putative, expressed"	Medtr7g143410.1	"Nucleotide binding protein, PINc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3793.1.S1_at	A	A1TS	POPTR_0003s08760	POPTR_0003s08760 (11)	scaffold_3:10137658-10138516(-) (11)	NA	P49359	"Glycine cleavage system H protein, mitochondrial"	AT1G32470.1	Single hybrid motif superfamily protein 	LOC_Os10g37180.1	"glycine cleavage system H protein, putative, expressed"	Medtr5g014430.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
Ptp.3793.1.S1_s_at	A	A1TS	POPTR_0003s08760	POPTR_0003s08760 (11)	scaffold_3:10137713-10138774(-) (11)	NA	P49359	"Glycine cleavage system H protein, mitochondrial"	AT1G32470.1	Single hybrid motif superfamily protein 	LOC_Os10g37180.1	"glycine cleavage system H protein, putative, expressed"	Medtr5g014430.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
Ptp.3799.1.S1_s_at	A	A1TS	POPTR_0007s00370	POPTR_0007s00370 (11)	scaffold_7:124194-124710(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g151520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.380.1.A1_s_at	A	A1TS	POPTR_0016s14080	POPTR_0016s14080 (11)	scaffold_16:13322009-13322332(+) (11)	NA	NA	NA	AT2G38370.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr3g097420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.380.2.S1_at	A	A1TS	POPTR_0016s14080	POPTR_0016s14080 (9)	scaffold_16:13321092-13321324(+) (9)	NA	NA	NA	AT2G38370.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr3g097420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3801.1.S1_at	A	A1TA	POPTR_0002s05850	POPTR_0002s05850 (9)	scaffold_2:3843552-3844026(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3802.1.A1_a_at	A	A1TS	POPTR_0002s16150	POPTR_0002s16150 (11)	scaffold_2:12068425-12068579(+) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g40100.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.3802.1.A1_at	A	A1TS	POPTR_0002s16150	POPTR_0002s16150 (10)	scaffold_2:12067591-12068393(+) (10)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g40100.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.3803.2.A1_a_at	A	A1TS	POPTR_0006s03560	POPTR_0006s03560 (11)	scaffold_6:2328759-2329407(-) (11)	NA	Q9M1K1	Transcription factor ORG2	AT3G56970.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g72370.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g107450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.3804.1.S1_at	A	A1TS	POPTR_0013s10120	POPTR_0013s10120 (10)	scaffold_13:10116492-10117490(+) (10)	NA	Q9FIJ7	"Probable adenylate kinase 2, chloroplastic"	AT5G47840.1	adenosine monophosphate kinase 	LOC_Os08g01770.1	"adenylate kinase, putative, expressed"	Medtr4g041640.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.3805.1.S1_at	A	A1TS	POPTR_0017s11420	POPTR_0017s11420 (11)	scaffold_17:11184814-11185062(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os05g51420.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g113260.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3806.1.A1_at	A	A1TS	POPTR_0005s24860	POPTR_0005s24860 (11)	scaffold_5:23290522-23290951(+) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G28540.1	casein kinase I-like 6 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3808.2.S1_at	A	A1MS	POPTR_0013s15740	POPTR_0013s15740 (11)	scaffold_13:15640011-15640744(+) (11)	NA	Q8K2U2	Probable alpha-ketoglutarate-dependent dioxygenase ABH6	AT4G20350.2	oxidoreductases 	LOC_Os10g28410.1	"GA19388-PA, putative, expressed"	Medtr6g070830.1	"Alkylated DNA repair protein alkB homolog 6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3809.1.S1_at	A	A1TS	POPTR_0010s06630	POPTR_0010s06630 (10)	scaffold_10:7926270-7926488(+) (10)//scaffold_468:4819-5021(-) (9)	NA	NA	NA	AT1G27850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink). 	LOC_Os12g13670.2	expressed protein	Medtr3g103410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3810.1.S1_at	A	A1TS	POPTR_0001s40000	POPTR_0001s40000 (11)	scaffold_1:39326344-39326618(-) (11)//scaffold_1:39340564-39340858(-) (11)	NA	P16273	Pathogen-related protein	AT1G78780.2	pathogenesis-related family protein 	LOC_Os01g53090.1	"pathogen-related protein, putative, expressed"	Medtr8g068150.1	"Pathogen-related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3811.2.S1_s_at	A	A1TS	POPTR_0013s04660	POPTR_0013s04660 (11)	scaffold_13:3206621-3207350(+) (11)	NA	P46976	Glycogenin-1	AT5G18480.1	plant glycogenin-like starch initiation protein 6 	LOC_Os02g41520.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g093950.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.3812.1.S1_s_at	A	A1TS	POPTR_0014s17720	POPTR_0014s17720 (11)	scaffold_14:13978835-13980337(-) (11)	NA	O23051	Ent-kaurenoic acid oxidase 1	AT1G05160.1	"cytochrome P450, family 88, subfamily A, polypeptide 3 "	LOC_Os06g02019.1	"cytochrome P450, putative, expressed"	Medtr5g014420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3813.1.S1_at	A	A1TS	POPTR_0009s03230	POPTR_0009s03230 (11)	scaffold_9:3922344-3922834(+) (11)	NA	O82598	Aquaporin TIP1-3	AT4G01470.1	tonoplast intrinsic protein 1;3 	LOC_Os01g74450.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3814.1.S1_s_at	A	A1TS	POPTR_0017s00400	POPTR_0017s00400 (11)	scaffold_17:124771-125527(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3815.1.S1_at	A	A1TS	POPTR_0009s15990	POPTR_0009s15990 (10)	scaffold_9:12252795-12253742(+) (10)	NA	Q9ZUH5	Short-chain dehydrogenase/reductase 2	AT2G24190.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g48640.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr3g111280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3818.1.A1_s_at	A	A1TS	POPTR_0002s15100	POPTR_0002s15100 (11)	scaffold_2:11204334-11205560(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.1	WD-40 repeat family protein / beige-related 	LOC_Os04g46894.1	"beige/BEACH domain containing protein, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3819.1.S1_at	A	A1TS	POPTR_0007s03630	POPTR_0007s03630 (10)	scaffold_7:2085133-2085507(+) (10)	NA	P13087	Miraculin	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.3821.1.S1_s_at	A	A1TS	POPTR_0016s14220	POPTR_0016s14220 (11)	scaffold_16:13454647-13455169(+) (11)	NA	NA	NA	AT3G51610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os05g07640.1	expressed protein	Medtr7g080110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3822.1.S1_s_at	A	A1TS	POPTR_0005s08630	POPTR_0005s08630 (11)	scaffold_5:5997894-5997988(-) (11)	NA	NA	NA	AT2G21960.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 	LOC_Os04g54640.1	"peptidase, cysteine peptidase active site, putative, expressed"	Medtr2g077520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3823.1.S1_at	A	A1TS	POPTR_0007s15300	POPTR_0007s15300 (10)	scaffold_7:14880074-14880548(+) (10)	NA	NA	NA	AT3G19990.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). "	LOC_Os02g58150.1	expressed protein	Medtr1g047000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3824.1.S1_at	A	A1TS	POPTR_0001s22670	POPTR_0001s22670 (11)	scaffold_1:21562102-21562237(+) (11)	NA	Q9FMR5	Vesicle-associated membrane protein 714	AT5G22360.1	vesicle-associated membrane protein 714 	LOC_Os10g06540.1	"vesicle-associated membrane protein, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.3826.1.A1_s_at	A	A2TS	POPTR_0004s03290	POPTR_0004s03290 (11)//POPTR_0004s03300 (11)	scaffold_4:2241986-2242577(+) (11)//scaffold_4:2247093-2247703(+) (11)	NA	P43177	Major pollen allergen Bet v 1-D/H	NA	NA	LOC_Os12g36880.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.3827.1.S1_at	A	A1TS	POPTR_0019s04090	POPTR_0019s04090 (9)	scaffold_19:4172593-4173631(-) (10)	NA	Q92616	Translational activator GCN1	AT1G64790.1	ILITYHIA 	LOC_Os03g51140.1	"HEAT repeat family protein, putative, expressed"	Medtr7g143040.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3828.1.A1_at	A	A1TS	POPTR_0017s11500	POPTR_0017s11500 (11)	scaffold_17:11241898-11242372(-) (11)	NA	Q42510	Pattern formation protein EMB30	AT1G13980.2	sec7 domain-containing protein 	LOC_Os03g46330.1	"pattern formation protein EMB30, putative, expressed"	Medtr5g087940.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
Ptp.3829.1.S1_at	A	A1TS	POPTR_0003s16460	POPTR_0003s16460 (11)	scaffold_3:16053548-16053927(+) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT3G43740.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g32580.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr7g005120.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.3831.1.S1_at	A	A1TS	POPTR_0016s14560	POPTR_0016s14560 (11)	scaffold_16:13751554-13751709(+) (11)	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g56330.1	"TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3832.1.S1_at	A	A1TS	POPTR_0014s16060	POPTR_0014s16060 (10)	scaffold_14:12150885-12151266(+) (10)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.2	"OsFBX331 - F-box domain containing protein, expressed"	Medtr3g008640.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3835.1.S1_at	A	A1TS	POPTR_0491s00200	POPTR_0491s00200 (11)	scaffold_491:9865-9981(-) (11)	NA	NA	NA	AT3G59680.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g41860.1	expressed protein	Medtr4g128470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3836.1.A1_at	A	A1TS	POPTR_0015s05530	POPTR_0015s05530 (11)	scaffold_15:5860556-5861219(-) (11)	NA	P0C042	Uncharacterized protein At4g15970	AT1G14590.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os04g49590.1	"regulatory protein, putative, expressed"	Medtr6g090280.1	"Uncharacterized protein At4g15970, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3838.2.S1_at	A	A1TA	POPTR_0014s04050	POPTR_0014s04050 (11)	scaffold_14:3221665-3221758(+) (11)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT5G42610.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3839.1.S1_at	A	A1TS	POPTR_0006s08450	POPTR_0006s08450 (11)	scaffold_6:6166511-6168251(+) (11)	NA	Q8LCY2	"Iron-sulfur assembly protein IscA-like 2, mitochondrial"	AT5G03905.1	Iron-sulphur cluster biosynthesis family protein 	LOC_Os08g28230.1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"	Medtr7g127380.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.384.1.A1_at	A	A1TS	POPTR_0016s06230	POPTR_0016s06230 (9)	scaffold_16:4171532-4171764(-) (9)	NA	NA	NA	AT5G06610.1	Protein of unknown function (DUF620) 	LOC_Os03g07120.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3840.1.S1_s_at	A	A1TS	POPTR_0015s12020	POPTR_0015s12020 (11)	scaffold_15:12456399-12462942(+) (11)	NA	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129900.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3842.1.A1_a_at	A	A1TS	POPTR_0003s20270	POPTR_0003s20270 (11)	scaffold_3:18793711-18795198(+) (11)	NA	NA	NA	AT5G13470.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g71262.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3846.1.S1_at	A	A1TS	POPTR_0003s08140	POPTR_0003s08140 (11)	scaffold_3:9563160-9563827(-) (11)	NA	O23547	Expansin-like B1	AT4G17030.1	expansin-like B1 	LOC_Os07g31390.1	"beta-expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3846.1.S1_s_at	A	A1TS	POPTR_0003s08140	POPTR_0003s08140 (11)	scaffold_3:9563194-9563695(-) (11)	NA	O23547	Expansin-like B1	AT4G17030.1	expansin-like B1 	LOC_Os07g31390.1	"beta-expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3849.1.S1_at	A	A1TS	POPTR_0015s06800	POPTR_0015s06800 (9)	scaffold_15:7842906-7842940(+) (9)	NA	P27694	Replication protein A 70 kDa DNA-binding subunit	AT5G08020.1	RPA70-kDa subunit B 	LOC_Os03g11540.1	"RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.3849.1.S1_s_at	A	A1TS	POPTR_0015s06800	POPTR_0015s06800 (11)	scaffold_15:7843010-7843664(+) (11)	NA	P27694	Replication protein A 70 kDa DNA-binding subunit	AT5G08020.1	RPA70-kDa subunit B 	LOC_Os03g11540.1	"RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.3853.1.S1_at	A	A1MS	POPTR_0012s07910	POPTR_0012s07910 (9)	scaffold_12:8907113-8907628(+) (9)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50840.2	"BAH domain containing protein, putative, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
Ptp.3855.1.S1_a_at	A	A1TS	POPTR_0009s04320	POPTR_0009s04320 (9)	scaffold_9:4750331-4750427(+) (9)	NA	NA	NA	AT5G59080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3855.1.S1_s_at	A	A1TS	POPTR_0009s04320	POPTR_0009s04320 (11)	scaffold_9:4749307-4749755(+) (11)	NA	NA	NA	AT5G59080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3856.1.S1_s_at	A	A1TS	POPTR_0006s28210	POPTR_0006s28210 (11)	scaffold_6:25977173-25979413(-) (11)	NA	Q6GR43	Transmembrane protein 85	AT5G10780.1	"CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g24580.1	"transmembrane protein 85, putative, expressed"	Medtr1g016570.1	Protein of unknown function DUF1077 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3857.1.S1_s_at	A	A1TS	POPTR_0010s02450	POPTR_0010s02450 (11)	scaffold_10:2835082-2835773(-) (11)	POPTR_0008s22590 (7)	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.3858.1.S1_at	A	A1TS	POPTR_0007s12660	POPTR_0007s12660 (11)	scaffold_7:12913377-12913781(+) (11)	NA	Q9FGY4	F-box protein At5g49610	AT5G49610.1	F-box family protein 	LOC_Os03g56500.1	expressed protein	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.386.2.A1_s_at	A	A1TS	POPTR_0011s13380	POPTR_0011s13380 (11)	scaffold_11:16145068-16145110(+) (11)	NA	Q43472	Glycine-rich RNA-binding protein blt801	AT5G54580.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g04440.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g118370.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3864.1.S1_at	A	A1TS	POPTR_0017s12050	POPTR_0017s12050 (9)	scaffold_17:12177951-12178578(-) (9)	NA	NA	NA	AT3G01175.1	Protein of unknown function (DUF1666) 	LOC_Os09g24700.1	expressed protein	Medtr7g009560.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3865.2.S1_a_at	A	A1TS	POPTR_0019s10370	POPTR_0019s10370 (10)	scaffold_19:11930865-11933988(-) (10)	NA	NA	NA	AT1G71480.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os09g09320.1	"nuclear transport factor, putative, expressed"	NA	NA	GO:0006810|transport	NA	GO:0005622|intracellular
Ptp.3867.1.S1_s_at	A	A1TS	POPTR_0005s17300	POPTR_0005s17300 (11)	scaffold_5:14610890-14612201(+) (11)	NA	P46266	14-3-3-like protein	AT1G78300.1	general regulatory factor 2 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.3869.1.S1_at	A	A1TS	POPTR_0007s14630	POPTR_0007s14630 (9)	scaffold_7:14381789-14382314(+) (9)	NA	Q9M2Y9	Transcription factor RAX3	AT3G49690.1	myb domain protein 84 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.387.1.A1_a_at	A	A1TS	POPTR_0010s05400	POPTR_0010s05400 (11)	scaffold_10:6862014-6862458(+) (11)	NA	Q8LPT9	"Alpha-glucan water dikinase, chloroplastic"	AT1G10760.1	"Pyruvate phosphate dikinase, PEP/pyruvate binding domain "	LOC_Os06g30310.1	"alpha-glucan water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.3870.1.S1_s_at	A	A1TS	POPTR_0015s00840	POPTR_0015s00840 (11)	scaffold_15:490255-490426(+) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.3871.1.S1_s_at	A	A1TS	POPTR_0003s06090	POPTR_0003s06090 (11)	scaffold_3:7497936-7498403(-) (11)	NA	NA	NA	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr8g119830.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3872.1.S1_at	A	A1TS	POPTR_0017s03410	POPTR_0017s03410 (10)	scaffold_17:2496824-2497333(-) (10)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.3874.2.S1_at	A	A1MS	POPTR_0014s08180	POPTR_0014s08180 (9)	scaffold_14:6071430-6071598(-) (9)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.2	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3875.1.S1_s_at	A	A1MS	POPTR_0005s07840	POPTR_0005s07840 (11)	scaffold_5:5384443-5385293(+) (11)	NA	Q5SUC9	"Protein SCO1 homolog, mitochondrial"	AT4G39740.1	Thioredoxin superfamily protein 	LOC_Os09g20430.1	"SCO1 protein homolog, mitochondrial precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3876.1.S1_s_at	A	A1TS	POPTR_0001s28740	POPTR_0001s28740 (11)	scaffold_1:27507560-27508691(+) (11)	NA	P0C895	LRR repeats and ubiquitin-like domain-containing protein At2g30105	AT2G30105.1	"CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1). "	LOC_Os10g31790.1	"ubiquitin family protein, putative, expressed"	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.3877.1.S1_at	A	A1TS	POPTR_0014s03220	POPTR_0014s03220 (10)	scaffold_14:2567364-2567397(+) (10)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.3877.1.S1_s_at	A	A1TS	POPTR_0014s03220	POPTR_0014s03220 (11)	scaffold_14:2566876-2567420(+) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.3879.1.S1_at	A	A1TS	POPTR_0008s09660	POPTR_0008s09660 (11)	scaffold_8:5968698-5968917(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3880.1.S1_at	A	A1TS	POPTR_0005s01900	POPTR_0005s01900 (9)	scaffold_5:1246654-1247068(+) (9)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g15010.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3881.1.S1_a_at	A	A3TS	POPTR_0004s10690	POPTR_0004s10750 (10)//POPTR_0004s10770 (10)//POPTR_0004s10690 (10)	scaffold_4:9226131-9226173(+) (10)//scaffold_4:9281046-9281088(+) (10)//scaffold_4:9301021-9301063(+) (10)//scaffold_4:9316667-9316709(+) (10)	NA	NA	NA	AT5G38760.1	Late embryogenesis abundant protein (LEA) family protein 	NA	NA	Medtr2g074350.1	"pollen coat-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3882.1.S1_at	A	A1TS	POPTR_0001s15180	POPTR_0001s15180 (11)	scaffold_1:12028741-12029816(-) (11)	NA	Q9LD45	Bax inhibitor 1	AT5G47120.1	BAX inhibitor 1 	LOC_Os02g03280.2	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr5g013460.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3883.1.S1_s_at	A	A1TS	POPTR_0018s07410	POPTR_0018s07410 (11)	scaffold_18:7718764-7718804(+) (11)	NA	O65282	"20 kDa chaperonin, chloroplastic"	AT5G20720.3	chaperonin 20 	LOC_Os09g26730.1	"chaperonin, putative, expressed"	Medtr8g132830.1	GroES-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.3885.1.S1_s_at	A	A1TS	POPTR_0001s02260	POPTR_0001s02260 (11)	scaffold_1:1721604-1721693(+) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G17790.1	SNARE associated Golgi protein family 	LOC_Os02g46660.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3889.1.S1_s_at	A	A1TS	POPTR_0013s15500	POPTR_0013s15500 (11)	scaffold_13:15448653-15449090(-) (11)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.389.1.A1_s_at	A	A1TS	POPTR_0007s06010	POPTR_0007s06010 (10)	scaffold_7:4149551-4149586(-) (10)	NA	Q9SNC6	U-box domain-containing protein 13	AT2G22125.1	binding 	LOC_Os06g11990.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3890.1.S1_at	A	A1TS	POPTR_0008s02860	POPTR_0008s02860 (10)	scaffold_8:1458633-1459503(-) (10)	NA	Q07469	Bark storage protein A	AT4G24350.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
Ptp.3891.1.S1_s_at	A	A1TS	POPTR_0008s20860	POPTR_0008s20860 (10)	scaffold_8:14861494-14861931(+) (10)	NA	NA	NA	AT3G06070.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g146290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3892.1.S1_at	A	A1TS	POPTR_0010s13360	POPTR_0010s13360 (9)	scaffold_10:13197025-13197534(-) (9)	NA	NA	NA	AT1G68450.1	VQ motif-containing protein 	LOC_Os08g01260.1	"VQ domain containing protein, putative"	Medtr1g140810.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3894.1.S1_s_at	A	A2TS	POPTR_0001s24250	POPTR_0001s24250 (10)//POPTR_1833s00200 (9)	scaffold_1:23601484-23601917(+) (10)//scaffold_1833:84-515(+) (11)	NA	NA	NA	AT2G37430.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g02390.1	"ZOS5-02 - C2H2 zinc finger protein, expressed"	Medtr7g024970.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3899.1.S1_s_at	A	A1TS	POPTR_0001s01460	POPTR_0001s01460 (11)	scaffold_1:1091779-1092291(+) (11)	NA	P42735	Cadmium-induced protein AS8	AT4G19070.1	Putative membrane lipoprotein 	LOC_Os07g05040.1	"cadmium-induced protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.39.1.A1_a_at	A	A2TS	POPTR_0017s13830	POPTR_0017s13830 (11)//POPTR_0571s00200 (10)	scaffold_17:14048896-14051866(-) (11)//scaffold_571:1506-4419(+) (11)	NA	NA	NA	AT5G16060.1	Cytochrome c oxidase biogenesis protein Cmc1-like 	LOC_Os03g15240.1	hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.390.2.A1_s_at	A	A1MS	POPTR_0002s20660	POPTR_0002s20660 (11)	scaffold_2:16737966-16738367(+) (11)	NA	Q8LEA8	Phytochrome A-associated F-box protein	AT4G02440.1	F-box family protein 	LOC_Os05g30190.1	"phytochrome A-associated F-box protein, putative, expressed"	Medtr8g068260.1	"Phytochrome A-associated F-box protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3902.1.S1_at	A	A1TS	POPTR_0005s13830	POPTR_0005s13830 (11)	scaffold_5:10838590-10838920(-) (11)	NA	Q41495	STS14 protein	AT5G66590.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os07g03710.1	"SCP-like extracellular protein, expressed"	AC233653_7.1	"STS14 protein precursor, putative AC233653.2 29577-30147 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3903.1.S1_at	A	A1TS	POPTR_0003s10420	POPTR_0003s10420 (11)	scaffold_3:11411201-11411513(-) (11)	NA	P31133	Putrescine-binding periplasmic protein	AT1G31410.1	putrescine-binding periplasmic protein-related 	LOC_Os04g51310.1	"putrescine-binding periplasmic protein-related, putative, expressed"	Medtr8g086300.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3905.1.S1_s_at	A	A1TS	POPTR_0007s14250	POPTR_0007s14250 (11)	scaffold_7:14089267-14089847(-) (11)	NA	Q9T074	Phosphoenolpyruvate carboxykinase [ATP]	AT4G37870.1	phosphoenolpyruvate carboxykinase 1 	LOC_Os03g15050.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	Medtr5g032160.1	Phosphoenolpyruvate carboxykinase (ATP); 	GO:0044283|small molecule biosynthetic process||GO:0006094|gluconeogenesis||GO:0044281|small molecule metabolic process	GO:0004612|phosphoenolpyruvate carboxykinase (ATP) activity||GO:0005524|ATP binding	NA
Ptp.3911.1.S1_s_at	A	A1TS	POPTR_0014s16250	POPTR_0014s16250 (11)	scaffold_14:12331116-12331929(-) (11)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT5G35740.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g105130.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3912.1.S1_a_at	A	A1TS	POPTR_0003s11950	POPTR_0003s11950 (11)	scaffold_3:12658961-12659294(-) (11)	NA	NA	NA	AT4G22920.1	non-yellowing 1 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.1	"senescence-inducible chloroplast stay-green protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3914.1.S1_at	A	A1TS	POPTR_0002s23690	POPTR_0002s23690 (11)	scaffold_2:21230992-21231534(+) (11)	NA	Q8L5T9	Cysteine proteinase inhibitor 2	AT2G31980.1	PHYTOCYSTATIN 2 	LOC_Os04g28250.1	"cysteine proteinase inhibitor precursor, putative, expressed"	Medtr3g104370.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.3915.2.S1_a_at	A	A1TS	POPTR_0006s12360	POPTR_0006s12360 (11)	scaffold_6:9523238-9524163(+) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G22920.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os03g05270.2	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr4g076230.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3918.1.S1_at	A	A1TS	POPTR_0015s10530	POPTR_0015s10530 (11)	scaffold_15:11423049-11424829(-) (11)	NA	Q8HSW1	"Adenylate kinase, chloroplastic"	AT3G01820.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g02540.1	"adenylate kinase, putative, expressed"	Medtr7g120720.1	"Adenylate/cytidine kinase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3920.1.S1_at	A	A2TS	POPTR_0016s02370	POPTR_0016s02370 (10)//POPTR_0016s02350 (9)	scaffold_16:1160090-1160494(+) (10)//scaffold_16:1172561-1172968(+) (10)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr7g071180.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3920.2.S1_s_at	A	A1TS	POPTR_0004s17520	POPTR_0004s17520 (11)	scaffold_4:17690700-17690946(-) (11)	NA	NA	NA	AT4G32090.1	"Beta-1,3-N-Acetylglucosaminyltransferase family protein "	LOC_Os02g30780.1	"LGC1, putative, expressed"	Medtr2g080840.1	"Glycosyl transferase, family 31 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3921.1.S1_s_at	A	A1TS	POPTR_0017s00870	POPTR_0017s00870 (10)	scaffold_17:649629-651706(-) (10)	NA	Q2KIK0	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3924.1.S1_s_at	A	A1TS	POPTR_0005s14430	POPTR_0005s14430 (11)	scaffold_5:11468476-11468526(+) (11)	NA	Q9C8Y1	Probable calcium-binding protein CML23	AT1G66400.1	calmodulin like 23 	LOC_Os05g13580.1	"OsCML18 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g086860.1	"Calcium-binding protein, S-100/ICaBP type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3925.1.S1_at	A	A1TS	POPTR_0005s24610	POPTR_0005s24610 (9)	scaffold_5:23092729-23093096(-) (9)	NA	P09802	Legumin A	AT5G44120.3	RmlC-like cupins superfamily protein 	LOC_Os01g55690.1	"glutelin, putative, expressed"	Medtr1g086770.1	11-S plant seed storage protein 	NA	GO:0045735|nutrient reservoir activity	NA
Ptp.3928.1.A1_at	A	A1TS	POPTR_0013s03000	POPTR_0013s03000 (9)	scaffold_13:1820602-1821388(+) (11)	NA	NA	NA	AT5G27290.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g28540.1	"stress regulated protein, putative, expressed"	Medtr7g139860.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.393.2.S1_at	A	A1TS	POPTR_0018s03560	POPTR_0018s03560 (11)	scaffold_18:3086484-3086742(-) (11)	NA	Q9SV21	Coatomer subunit beta-1	AT4G31480.2	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138720.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
Ptp.3930.1.S1_s_at	A	A1TS	POPTR_0015s04970	POPTR_0015s04970 (11)	scaffold_15:5194587-5195364(-) (11)	NA	Q9LE73	Nudix hydrolase 4	AT1G18300.1	nudix hydrolase homolog 4 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr6g080940.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.3931.1.A1_a_at	A	A1TS	POPTR_0015s03420	POPTR_0015s03420 (11)	scaffold_15:2949853-2950756(-) (11)	NA	Q3U1Y4	DENN domain-containing protein 4B	AT1G49040.1	stomatal cytokinesis defective / SCD1 protein (SCD1) 	LOC_Os01g39380.1	"SCD1, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3932.1.S1_at	A	A1TS	POPTR_0007s04840	POPTR_0007s04840 (10)	scaffold_7:3025027-3025639(-) (10)	NA	P43273	Transcription factor TGA2	AT3G14880.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g06560.1	"transcription factor HBP-1b, putative, expressed"	Medtr4g143910.1	"tumor-related protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3934.1.S1_at	A	A1TS	POPTR_0010s12610	POPTR_0010s12610 (10)	scaffold_10:12601241-12602108(+) (10)	NA	Q7ZWL6	Repressor of RNA polymerase III transcription MAF1 homolog	AT5G13240.1	transcription regulators 	LOC_Os04g56730.3	"repressor of RNA polymerase III transcription MAF1, putative, expressed"	Medtr1g137700.1	"Repressor of RNA polymerase III transcription MAF1 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3935.1.A1_at	A	A1TS	POPTR_0001s29340	POPTR_0001s29340 (10)	scaffold_1:28062169-28063481(+) (10)	NA	A2CER7	Protein spinster homolog 3	AT5G64500.1	Major facilitator superfamily protein 	LOC_Os04g44430.1	"transporter, major facilitator family, putative, expressed"	Medtr4g121900.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3935.2.S1_a_at	A	A1TS	POPTR_0001s29340	POPTR_0001s29340 (11)	scaffold_1:28054645-28056069(+) (11)	NA	A2CER7	Protein spinster homolog 3	AT5G64500.1	Major facilitator superfamily protein 	LOC_Os04g44430.1	"transporter, major facilitator family, putative, expressed"	Medtr4g121900.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3937.1.S1_s_at	A	A1TS	POPTR_0014s13660	POPTR_0014s13660 (11)	scaffold_14:10015327-10015366(-) (11)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.3940.1.S1_at	A	A1TS	POPTR_0013s02480	POPTR_0013s02480 (10)	scaffold_13:1470090-1470638(+) (10)	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3941.1.S1_at	A	A1TS	POPTR_0001s33710	POPTR_0001s33710 (11)	scaffold_1:31891212-31891655(-) (11)	NA	Q9FLN4	"50S ribosomal protein L27, chloroplastic"	AT5G40950.1	ribosomal protein large subunit 27 	LOC_Os01g69950.1	"ribosomal protein L27, putative, expressed"	Medtr3g021590.1	Ribosomal protein L27 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3942.1.S1_a_at	A	A1TS	POPTR_0001s47490	POPTR_0001s47490 (11)	scaffold_1:47663208-47663929(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3942.3.S1_at	A	A1MS	POPTR_0001s47490	POPTR_0001s47490 (11)	scaffold_1:47663934-47664182(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3943.1.S1_at	A	A1TS	POPTR_0002s25880	POPTR_0002s25880 (11)	scaffold_2:22893449-22894116(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.3943.1.S1_s_at	A	A1TS	POPTR_0002s25880	POPTR_0002s25880 (11)	scaffold_2:22893193-22893362(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.3944.1.S1_at	A	A1TS	POPTR_0015s12060	POPTR_0015s12060 (11)	scaffold_15:12474930-12475516(+) (11)	NA	NA	NA	AT5G07330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g32890.1	expressed protein	Medtr5g006680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3945.1.S1_s_at	A	A1TS	POPTR_0014s11540	POPTR_0014s11540 (11)	scaffold_14:8560756-8561131(-) (11)	NA	NA	NA	AT2G16760.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g19452.1	"SMP-30/Gluconolaconase/LRE domain protein, putative, expressed"	Medtr1g106660.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3947.1.S1_s_at	A	A1TS	POPTR_0006s05750	POPTR_0006s05750 (11)	scaffold_6:4042116-4042611(-) (11)	NA	Q05091	Polygalacturonase inhibitor	AT5G06860.1	polygalacturonase inhibiting protein 1 	LOC_Os05g01444.1	"polygalacturonase inhibitor precursor, putative, expressed"	Medtr7g111410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.3950.1.S1_at	A	A1TS	POPTR_0018s10890	POPTR_0018s10890 (11)	scaffold_18:11753701-11756102(-) (11)	NA	O94581	Cytochrome c oxidase subunit 6B	AT1G22450.1	cytochrome C oxidase 6B 	LOC_Os07g42910.1	"cytochrome c oxidase subunit, putative, expressed"	Medtr5g073800.1	"Cytochrome oxidase c, subunit VIb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
Ptp.3951.1.S1_at	A	A1TS	POPTR_0010s09920	POPTR_0010s09920 (10)	scaffold_10:10516260-10516849(-) (10)	NA	P49252	Primary amine oxidase (Fragment)	AT1G31690.1	Copper amine oxidase family protein 	LOC_Os06g23114.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr1g132560.1	Copper amine oxidase; ; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
Ptp.3953.1.S1_s_at	A	A1TS	POPTR_0003s12380	POPTR_0003s12380 (11)	scaffold_3:12970710-12972257(-) (11)	NA	Q43070	UDP-glucose 4-epimerase	AT1G12780.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 1 	LOC_Os09g35800.1	"UDP-glucose 4-epimerase, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.3954.1.S1_a_at	A	A1TS	POPTR_0019s05940	POPTR_0019s05940 (11)	scaffold_19:6355808-6355847(+) (11)	NA	NA	NA	AT1G64980.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os07g23120.1	expressed protein	Medtr5g007200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3954.1.S1_s_at	A	A1TS	POPTR_0011s11830	POPTR_0011s11830 (11)	scaffold_11:14624927-14625054(-) (11)	NA	NA	NA	AT1G64980.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os07g23120.1	expressed protein	Medtr5g007200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3957.1.S1_a_at	A	A1TS	POPTR_0010s18850	POPTR_0010s18850 (11)	scaffold_10:16973477-16974185(-) (11)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3958.1.A1_s_at	A	A1TS	POPTR_0007s10380	POPTR_0007s10380 (11)	scaffold_7:10301145-10301558(-) (11)	NA	Q8BHJ5	F-box-like/WD repeat-containing protein TBL1XR1	AT5G67320.1	WD-40 repeat family protein 	LOC_Os07g22220.1	"F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3959.1.S1_at	A	A1TS	POPTR_0017s01150	POPTR_0017s01150 (10)	scaffold_17:830201-830243(+) (10)	NA	Q9SW09	40S ribosomal protein S10-1	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.2	"Plectin/S10, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.396.1.A1_at	A	A1TS	POPTR_0001s31400	POPTR_0001s31400 (11)	scaffold_1:29727658-29728144(-) (11)	NA	Q9BRX9	WD repeat domain-containing protein 83	AT5G64730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g33860.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g141700.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3962.1.A1_s_at	A	A1TS	POPTR_0003s08220	POPTR_0003s08220 (11)	scaffold_3:9631502-9631615(-) (11)	NA	NA	NA	AT4G17070.1	peptidyl-prolyl cis-trans isomerases 	LOC_Os03g01090.1	"peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed"	Medtr5g013700.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.3963.1.S1_at	A	A1TS	POPTR_0005s01890	POPTR_0005s01890 (9)	scaffold_5:1243142-1243199(+) (9)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g15010.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3966.1.S1_at	A	A1TS	POPTR_0004s17120	POPTR_0004s17120 (11)	scaffold_4:17457941-17459433(-) (11)	NA	O65693	"Probable ribosome-binding factor A, chloroplastic"	AT4G34730.1	ribosome-binding factor A family protein 	LOC_Os06g04610.1	"ribosome-binding factor A, chloroplast precursor, putative, expressed"	Medtr3g163130.1	Ribosome-binding factor A 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	NA
Ptp.3967.1.S1_at	A	A1TS	POPTR_0017s12230	POPTR_0017s12230 (11)	scaffold_17:12434918-12435254(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT5G15310.1	myb domain protein 16 	LOC_Os08g33660.1	"MYB family transcription factor, putative, expressed"	Medtr6g013190.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3969.1.S1_s_at	A	A1TS	POPTR_0009s14340	POPTR_0009s14340 (11)	scaffold_9:11244954-11245532(+) (11)	NA	B9HQZ6	"Probable alanyl-tRNA synthetase, chloroplastic"	AT5G22800.1	"Alanyl-tRNA synthetase, class IIc "	LOC_Os06g13660.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr3g163940.1	"Alanyl-tRNA synthetase, class IIc "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006419|alanyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004813|alanine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.397.2.S1_s_at	A	A1TS	POPTR_0010s02830	POPTR_0010s02830 (11)	scaffold_10:3332105-3332581(+) (11)	NA	NA	NA	AT4G02040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3970.1.A1_a_at	A	A1TS	POPTR_0004s23690	POPTR_0004s23690 (11)	scaffold_4:22330672-22330924(+) (11)	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.3973.1.S1_x_at	A	A1TS	POPTR_0004s05590	POPTR_0004s05590 (11)	scaffold_4:4324655-4326407(+) (11)	NA	O80929	60S ribosomal protein L36-1	AT2G37600.2	Ribosomal protein L36e family protein 	LOC_Os05g38520.4	"60S ribosomal protein L36-2, putative, expressed"	Medtr1g126960.2	Ribosomal protein L36E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3974.1.S1_at	A	A1MS	POPTR_0006s06130	POPTR_0006s06130 (9)	scaffold_6:4356740-4356776(+) (9)	NA	Q39224	Protein SRG1	AT5G20400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08023.1	"flavonol synthase/flavanone 3-hydroxylase, putative"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3978.1.S1_at	A	A1TS	POPTR_0006s13190	POPTR_0006s13190 (9)	scaffold_6:10437011-10437223(+) (9)	NA	Q42580	Peroxidase 21	AT2G37130.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr1g078990.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.398.1.S1_s_at	A	A1TS	POPTR_0014s08800	POPTR_0014s08800 (11)	scaffold_14:6514706-6515010(+) (11)	NA	Q8S8M5	Protein ABIL1	AT2G46225.1	ABI-1-like 1 	LOC_Os01g43420.1	expressed protein	Medtr7g143400.1	"Protein ABIL2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3980.1.S1_at	A	A1TS	POPTR_0006s04540	POPTR_0006s04540 (11)	scaffold_6:3090806-3092243(-) (11)	NA	NA	NA	AT3G57320.1	unknown protein; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g46710.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3982.1.S1_s_at	A	A1TS	POPTR_0012s14010	POPTR_0012s14010 (11)	scaffold_12:13990581-13992112(-) (11)	NA	O82616	Putative fructokinase-5	AT5G51830.1	pfkB-like carbohydrate kinase family protein 	LOC_Os06g12600.1	"kinase, pfkB family, putative, expressed"	Medtr6g096500.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3984.1.A1_at	A	A1TS	POPTR_0006s12160	POPTR_0006s12160 (11)	scaffold_6:9319536-9320498(+) (11)	NA	Q8W013	Caffeic acid 3-O-methyltransferase	AT3G53140.1	O-methyltransferase family protein 	LOC_Os02g57760.1	"O-methyltransferase, putative, expressed"	Medtr3g143560.2	"O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.3985.1.S1_at	A	A1TS	POPTR_0015s04310	POPTR_0015s04310 (11)	scaffold_15:4382444-4384537(+) (11)	NA	Q9XFK7	Protein MOTHER of FT and TF 1	AT1G18100.1	PEBP (phosphatidylethanolamine-binding protein) family protein 	LOC_Os06g30370.1	"osMFT1  MFT-Like1 homologous to Mother of FT and TFL1  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	Medtr4g155400.1	Phosphatidylethanolamine-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3987.1.S1_at	A	A1TS	POPTR_0008s15690	POPTR_0008s15690 (10)	scaffold_8:10460700-10461290(-) (10)	NA	Q94A20	BI1-like protein	AT3G63310.1	Bax inhibitor-1 family protein 	LOC_Os03g53400.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr1g083870.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3988.1.S1_s_at	A	A1TS	POPTR_0002s22670	POPTR_0002s22670 (11)	scaffold_2:19493736-19496392(+) (11)	POPTR_0014s13940 (6)	Q05609	Serine/threonine-protein kinase CTR1	AT3G58640.2	Mitogen activated protein kinase kinase kinase-related 	LOC_Os01g48330.1	"protein kinase domain containing protein, expressed"	Medtr4g109800.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3989.1.S1_at	A	A1TS	POPTR_0004s24240	POPTR_0004s24240 (11)	scaffold_4:22952113-22952347(-) (11)	NA	NA	NA	AT5G45310.1	"unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g73110.1	expressed protein	Medtr5g025850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3990.1.S1_s_at	A	A2TS	POPTR_0003s18370	POPTR_0003s18420 (11)//POPTR_0003s18370 (11)	scaffold_3:17472970-17474490(+) (11)//scaffold_3:17506383-17507903(+) (11)	NA	NA	NA	AT1G16080.1	"unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os08g16570.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3991.1.S1_s_at	A	A1TS	POPTR_0008s20660	POPTR_0008s20660 (11)	scaffold_8:14563800-14565724(+) (11)	NA	Q9C0Y8	UPF0613 protein PB24D3.06c	AT5G19050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g11060.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3992.1.S1_at	A	A1TS	POPTR_0005s20710	POPTR_0005s20710 (9)	scaffold_5:19827639-19827999(-) (9)	NA	Q68FJ8	TOM1-like protein 2	AT1G21380.1	Target of Myb protein 1 	LOC_Os11g09329.1	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
Ptp.3996.1.S1_s_at	A	A1TS	POPTR_0008s11850	POPTR_0008s11850 (10)	scaffold_8:7591437-7591786(-) (10)	NA	NA	NA	AT1G13360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04010.1	expressed protein	Medtr4g158300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4.1.A1_a_at	A	A1TS	POPTR_0015s07110	POPTR_0015s07110 (11)	scaffold_15:8230795-8231038(-) (11)	NA	Q9LFW3	COBRA-like protein 4	AT5G15630.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os03g30250.1	"COBRA-like protein precursor, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.40.1.S1_at	A	A1TS	POPTR_0005s20270	POPTR_0005s20270 (11)	scaffold_5:19313768-19313908(-) (11)	NA	Q9XI05	Proteasome subunit beta type-3-A	AT1G21720.1	proteasome beta subunit C1 	LOC_Os02g08520.1	"peptidase, T1 family, putative, expressed"	Medtr7g105310.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.400.1.A1_a_at	A	A1TS	POPTR_0010s03980	POPTR_0010s03980 (11)	scaffold_10:4773920-4774060(+) (11)	NA	Q8WTR2	Dual specificity protein phosphatase 19	AT3G23610.2	dual specificity protein phosphatase 1 	LOC_Os01g29469.1	"dual specificity protein phosphatase, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.400.2.A1_at	A	A1TS	POPTR_0010s03980	POPTR_0010s03980 (10)	scaffold_10:4773139-4773812(+) (10)	NA	Q8WTR2	Dual specificity protein phosphatase 19	AT3G23610.2	dual specificity protein phosphatase 1 	LOC_Os01g29469.1	"dual specificity protein phosphatase, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.4001.1.S1_at	A	A1TS	POPTR_0006s04440	POPTR_0006s04440 (11)	scaffold_6:3016155-3016686(-) (11)	NA	NA	NA	AT5G03990.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g58700.1	expressed protein	Medtr7g108030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4002.1.S1_s_at	A	A1TS	POPTR_0002s05540	POPTR_0002s05540 (11)	scaffold_2:3619229-3619572(-) (11)	NA	NA	NA	AT5G19160.1	TRICHOME BIREFRINGENCE-LIKE 11 	LOC_Os11g05080.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr7g133010.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4007.1.A1_at	A	A1TS	POPTR_0014s16010	POPTR_0014s16010 (11)	scaffold_14:12088547-12089344(+) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr8g148310.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4009.1.S1_at	A	A1TS	POPTR_0003s07740	POPTR_0003s07740 (11)	scaffold_3:9248100-9250770(-) (11)	NA	A6BM06	1-aminocyclopropane-1-carboxylate oxidase	AT4G16770.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os10g37899.1	"transposon protein, putative, unclassified, expressed"	Medtr8g105360.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4009.2.A1_s_at	A	A1MS	POPTR_0005s05850	POPTR_0005s05850 (11)	scaffold_11:1187953-1187988(+) (11)//scaffold_11:1254835-1254870(-) (11)//scaffold_14:1081163-1081197(+) (10)//scaffold_5:3818547-3818582(+) (11)//scaffold_7:3878464-3878499(+) (11)//scaffold_750:5780-5815(+) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os08g13420.1	"S-domain receptor-like protein kinase, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.401.1.S1_at	A	A1TS	POPTR_0002s24790	POPTR_0002s24790 (11)	scaffold_2:22053295-22053659(+) (11)	NA	Q9LSG3	Galacturonosyltransferase 8	AT3G25140.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os02g29530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g062010.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.4010.1.S1_at	A	A1TS	POPTR_0018s13990	POPTR_0018s13990 (11)	scaffold_18:14244291-14245784(+) (11)	NA	NA	NA	AT4G29960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51780.1	expressed protein	Medtr2g042660.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4014.1.S1_s_at	A	A1TS	POPTR_0008s06260	POPTR_0008s06260 (11)	scaffold_8:3708954-3709344(-) (11)	NA	P05478	18.5 kDa class I heat shock protein	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067320.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4015.1.S1_at	A	A1TS	POPTR_0011s05400	POPTR_0011s05400 (11)	scaffold_11:5320660-5321257(+) (11)	NA	NA	NA	AT4G21020.1	Late embryogenesis abundant protein (LEA) family protein 	LOC_Os04g52110.1	"late embryogenesis abundant protein, group 3, putative, expressed"	Medtr2g017540.1	"late embryogenesis abundant protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4016.1.A1_at	A	A1TS	POPTR_0001s02370	POPTR_0001s02370 (11)	scaffold_1:1789772-1790906(-) (11)	NA	P19683	"31 kDa ribonucleoprotein, chloroplastic"	AT2G35410.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g50110.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g029900.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4021.1.S1_at	A	A1TS	POPTR_0008s07200	POPTR_0008s07200 (9)	scaffold_8:4377104-4377454(-) (9)	NA	NA	NA	AT5G05500.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os01g07060.1	"POEI43 - Pollen Ole e I allergen and extensin family protein precursor, putative"	Medtr3g094630.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4022.1.S1_s_at	A	A1TS	POPTR_0015s08540	POPTR_0015s08540 (11)	scaffold_15:9830434-9830805(+) (11)	NA	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4024.1.S1_a_at	A	A1TS	POPTR_0010s09140	POPTR_0010s09140 (11)	scaffold_10:9975517-9975560(-) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
Ptp.4024.1.S1_at	A	A1TS	POPTR_0010s09140	POPTR_0010s09140 (11)	scaffold_10:9975398-9976037(-) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
Ptp.4024.2.A1_at	A	A1TS	POPTR_0008s15880	POPTR_0008s15880 (11)	scaffold_8:10602447-10602481(+) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
Ptp.4028.1.S1_at	A	A1TS	POPTR_0001s27100	POPTR_0001s27100 (9)	scaffold_1:26049060-26051355(+) (9)	NA	Q7L1T6	Cytochrome b5 reductase 4	AT5G09680.2	reduced lateral root formation 	LOC_Os07g12830.3	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	NA	NA	NA	GO:0020037|heme binding	NA
Ptp.4031.1.S1_s_at	A	A1TS	POPTR_0004s01770	POPTR_0004s01770 (11)	scaffold_4:1075048-1075331(+) (11)	NA	NA	NA	AT4G21790.1	tobamovirus multiplication 1 	LOC_Os03g36790.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4033.1.S1_at	A	A1MS	POPTR_0006s20210	POPTR_0006s20210 (9)	scaffold_6:19258565-19258974(+) (9)	NA	NA	NA	AT2G24300.2	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4034.1.S1_at	A	A1TS	POPTR_0001s24430	POPTR_0001s24430 (11)	scaffold_1:23706702-23707052(-) (11)	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4034.2.S1_s_at	A	A1TS	POPTR_0009s03410	POPTR_0009s03410 (11)	scaffold_9:4039062-4039512(-) (11)	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	Medtr3g156500.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4034.2.S1_x_at	A	A1TS	POPTR_0009s03410	POPTR_0009s03410 (10)	scaffold_9:4039025-4039510(-) (10)	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	Medtr3g156500.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4036.1.S1_at	A	A1TS	POPTR_0001s06040	POPTR_0001s06040 (11)	scaffold_1:4718225-4719026(-) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os07g46670.3	"early response to dehydration 15, putative, expressed"	Medtr3g026140.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4039.1.S1_at	A	A1TS	POPTR_0002s17080	POPTR_0002s17080 (9)	scaffold_2:12859791-12859954(+) (9)	NA	NA	NA	AT3G61680.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g43140.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.4040.1.S1_s_at	A	A1TS	POPTR_0004s18030	POPTR_0004s18030 (11)	scaffold_4:18039508-18039577(-) (11)	NA	Q42564	"L-ascorbate peroxidase 3, peroxisomal"	AT4G35000.1	ascorbate peroxidase 3 	LOC_Os08g43560.1	"OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9, expressed"	Medtr4g098670.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.4041.2.S1_s_at	A	A1TS	POPTR_0014s15280	POPTR_0014s15280 (11)	scaffold_14:11351723-11351979(-) (11)	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.2	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.1	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr2g006710.1	"Dihydrolipoamide acetyltransferase, long form "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.4043.1.A1_s_at	A	A1TS	POPTR_0006s11860	POPTR_0006s11860 (11)	scaffold_6:9054979-9056762(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.4044.1.S1_s_at	A	A1TS	POPTR_0003s10390	POPTR_0003s10390 (10)	scaffold_3:11388151-11388957(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g089630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4046.1.S1_x_at	A	A1TS	POPTR_0012s03450	POPTR_0012s03450 (11)	scaffold_12:2732649-2733475(+) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g38260.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4047.1.S1_s_at	A	A1TS	POPTR_0001s05810	POPTR_0001s05810 (11)	scaffold_1:4548962-4549382(-) (11)	NA	NA	NA	AT5G13470.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4048.1.S1_s_at	A	A1TS	POPTR_0004s20740	POPTR_0004s20740 (11)	scaffold_4:20171374-20172457(+) (11)	NA	O49884	60S ribosomal protein L30	AT1G36240.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.405.1.A1_s_at	A	A1TS	POPTR_0002s03770	POPTR_0002s03770 (11)	scaffold_2:2344798-2345539(-) (11)	NA	Q681Q7	Uncharacterized protein At1g03900	AT1G03900.1	non-intrinsic ABC protein 4 	LOC_Os10g33630.2	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
Ptp.4050.10.A1_at	A	A1TA	POPTR_0019s09950	POPTR_0019s09950 (11)	scaffold_19:11582404-11582500(+) (11)	POPTR_0019s09920 (7)	Q93ZR6	O-acyltransferase WSD1	AT5G53390.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os05g48260.1	"wax synthase, putative, expressed"	Medtr1g009270.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.11.A1_at	A	A1TA	POPTR_0010s24290	POPTR_0010s24290 (9)	scaffold_10:20578508-20579140(+) (9)	POPTR_0008s02430 (7)	NA	NA	AT1G66240.1	homolog of anti-oxidant 1 	LOC_Os08g10480.1	heavy metal-associated domain containing protein	Medtr1g117110.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.4050.13.A1_x_at	A	A1MA	POPTR_0001s41080	POPTR_0001s41080 (9)	scaffold_1:40733721-40734046(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.17.A1_at	A	A1TA	POPTR_0001s41080	POPTR_0001s41080 (11)	scaffold_1:40733147-40733197(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.2.S1_x_at	A	A1TS	POPTR_0011s11960	POPTR_0011s11960 (10)	scaffold_11:14761222-14761559(+) (10)	NA	Q96386	Metallothionein-like protein type 3	AT3G15353.1	metallothionein 3 	LOC_Os05g11320.1	"metallothionein-like protein 3B, putative, expressed"	Medtr8g070820.1	"Plant metallothionein, family 15 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.3.A1_at	A	A3TA	POPTR_0001s05330	POPTR_0328s00200 (11)//POPTR_0001s05330 (11)//POPTR_0017s07350 (11)	scaffold_1:4110574-4110683(+) (11)//scaffold_17:5708752-5708861(+) (11)//scaffold_328:6367-6476(-) (11)//scaffold_328:19167-19276(-) (11)	POPTR_0328s00210 (7)	Q8GSM2	"Lipoxygenase 2.3, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.4050.4.A1_at	A	A1TA	POPTR_0009s12710	POPTR_0009s12710 (11)	scaffold_9:10320918-10321007(-) (11)	POPTR_0004s16920 (6)	Q944G9	"Probable fructose-bisphosphate aldolase 2, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.4050.9.A1_at	A	A1TA	POPTR_0001s40250	POPTR_0001s40250 (11)	scaffold_1:39619261-39619506(-) (11)	POPTR_0011s11190 (8)	Q02909	"Phosphoenolpyruvate carboxylase, housekeeping isozyme"	AT3G14940.1	phosphoenolpyruvate carboxylase 3 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
Ptp.4051.1.S1_at	A	A1TS	POPTR_0010s16420	POPTR_0010s16420 (11)	scaffold_10:15394709-15394937(-) (11)	NA	Q8RU27	"Alpha-1,4-glucan-protein synthase [UDP-forming] 2"	AT3G08900.1	reversibly glycosylated polypeptide 3 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
Ptp.4053.1.A1_at	A	A1TS	POPTR_0015s06800	POPTR_0015s06800 (10)	scaffold_15:7844322-7845022(+) (10)	NA	P27694	Replication protein A 70 kDa DNA-binding subunit	AT5G08020.1	RPA70-kDa subunit B 	LOC_Os03g11540.1	"RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.4054.1.S1_a_at	A	A1TS	POPTR_0015s14380	POPTR_0015s14380 (11)	scaffold_15:14003598-14003774(+) (11)	NA	Q42971	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.4054.1.S1_s_at	A	A1TS	POPTR_0015s14380	POPTR_0015s14380 (11)	scaffold_15:14004148-14004721(+) (11)	NA	Q42971	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.4055.1.S1_a_at	A	A1TS	POPTR_0009s16460	POPTR_0009s16460 (11)	scaffold_9:12492611-12492716(-) (11)	NA	Q9ZUX4	"Uncharacterized protein At2g27730, mitochondrial"	AT2G27730.1	copper ion binding 	LOC_Os09g39550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4058.1.A1_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (11)	scaffold_2:5545819-5545855(+) (11)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4058.1.A1_s_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (11)	scaffold_2:5545992-5546328(+) (11)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4058.2.S1_at	A	A1TS	POPTR_0016s13160	POPTR_0016s13160 (9)	scaffold_16:12414242-12414623(-) (9)	NA	O13864	Importin subunit beta-1	AT3G08947.1	ARM repeat superfamily protein 	LOC_Os05g28510.4	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
Ptp.4058.3.S1_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (10)	scaffold_2:5544281-5544771(+) (10)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4059.1.S1_at	A	A1TS	POPTR_0018s06900	POPTR_0018s06900 (9)	scaffold_18:6988898-6989630(-) (9)	NA	O23969	Pollen-specific protein SF21	AT5G56750.1	N-MYC downregulated-like 1 	LOC_Os02g13150.1	"pollen-specific protein SF21, putative, expressed"	Medtr4g160760.1	Ndr 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4060.1.S1_s_at	A	A1TS	POPTR_0004s06630	POPTR_0004s06630 (11)	scaffold_4:5321054-5321431(-) (11)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr6g070510.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.4061.1.S1_at	A	A1TS	POPTR_0007s00470	POPTR_0007s00470 (11)	scaffold_7:178959-179285(-) (11)	NA	Q8LAC4	Probable uridine nucleosidase 2	AT1G05620.1	uridine-ribohydrolase  2 	LOC_Os03g31170.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr1g047060.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4062.1.A1_at	A	A1TS	POPTR_0017s07630	POPTR_0017s07630 (11)	scaffold_17:5936777-5936844(-) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g37456.2	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr4g120970.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4063.1.S1_at	A	A1TS	POPTR_0016s01720	POPTR_0016s01720 (11)	scaffold_16:778968-779054(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g52250.1	"LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4063.2.S1_a_at	A	A1TS	POPTR_0016s01720	POPTR_0016s01720 (11)	scaffold_16:778665-778750(-) (11)//scaffold_16:778722-778807(-) (11)//scaffold_16:778779-778864(-) (11)//scaffold_16:778836-778921(-) (9)	NA	P14009	14 kDa proline-rich protein DC2.15	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g52250.1	"LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4064.2.S1_at	A	A1MS	POPTR_0008s20590	POPTR_0008s20590 (10)	scaffold_8:14349149-14349531(-) (10)	NA	Q9ZT66	"Endo-1,3;1,4-beta-D-glucanase"	AT3G23600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33100.1	"endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed"	Medtr2g026480.1	Dienelactone hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4066.1.S1_at	A	A1TS	POPTR_0001s16640	POPTR_0001s16640 (11)	scaffold_1:13418782-13418891(-) (11)	NA	Q9LMA8	Protein TIFY 10A	AT1G19180.1	jasmonate-zim-domain protein 1 	LOC_Os03g28940.1	"ZIM domain containing protein, putative, expressed"	Medtr2g049880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4067.1.S1_at	A	A1TS	POPTR_0019s05360	POPTR_0019s05360 (9)	scaffold_19:5709897-5710335(+) (9)	NA	NA	NA	AT1G54400.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr7g102860.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4068.1.A1_a_at	A	A2TS	POPTR_0008s14130	POPTR_0010s11010 (11)//POPTR_0008s14130 (11)	scaffold_10:11412943-11412988(-) (11)//scaffold_8:9320517-9320562(+) (11)	NA	Q54V61	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	AT2G02050.1	"NADH-ubiquinone oxidoreductase B18 subunit, putative "	LOC_Os03g03770.1	expressed protein	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity	GO:0005739|mitochondrion
Ptp.4068.2.S1_a_at	A	A1TS	POPTR_0010s11000	POPTR_0010s11000 (11)	scaffold_10:11410165-11410333(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4069.1.A1_at	A	A1TS	POPTR_0019s12360	POPTR_0019s12360 (9)	scaffold_19:13401364-13401788(-) (9)	NA	P27054	Endochitinase PR4	AT3G54420.1	homolog of carrot EP3-3 chitinase 	LOC_Os04g41680.1	"CHIT3 - Chitinase family protein precursor, expressed"	Medtr2g120640.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
Ptp.407.1.A1_at	A	A1TS	POPTR_0009s13560	POPTR_0009s13560 (11)	scaffold_9:10763447-10764788(+) (11)	NA	P55034	26S proteasome non-ATPase regulatory subunit 4	AT4G38630.1	regulatory particle non-ATPase 10 	LOC_Os03g13970.2	"26S proteasome non-ATPase regulatory subunit 4, putative, expressed"	Medtr5g022350.1	"von Willebrand factor, type A; Ubiquitin interacting motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4070.1.S1_at	A	A1TS	POPTR_0015s11320	POPTR_0015s11320 (11)	scaffold_15:11919328-11919569(+) (11)	POPTR_0012s10480 (6)	Q42522	"Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic"	AT3G48730.1	"glutamate-1-semialdehyde 2,1-aminomutase 2 "	LOC_Os08g41990.1	"aminotransferase, putative, expressed"	Medtr3g163620.1	"Glutamate-1-semialdehyde-2,1-aminomutase; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.4071.1.S1_at	A	A1TS	POPTR_0018s10530	POPTR_0018s10530 (11)	scaffold_18:11449575-11449924(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4071.2.S1_s_at	A	A1TS	POPTR_0006s18800	POPTR_0006s18800 (11)	scaffold_18:11450002-11453495(-) (11)//scaffold_6:17478578-17482103(-) (11)	POPTR_0018s10540 (7)	A1XQR9	Small nuclear ribonucleoprotein E	AT4G30330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os02g03440.1	"LSM domain containing protein, expressed"	Medtr2g127110.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4073.1.S1_s_at	A	A1TS	POPTR_0014s12170	POPTR_0014s12170 (11)	scaffold_14:8997376-8997631(-) (11)	NA	O81416	Endoglucanase 17	AT4G02290.1	glycosyl hydrolase 9B13 	LOC_Os01g21070.1	"endoglucanase, putative, expressed"	Medtr1g108080.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4074.1.S1_at	A	A1MS	POPTR_0009s00940	POPTR_0009s00940 (11)	scaffold_9:1079706-1079824(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4075.1.S1_at	A	A1TS	POPTR_0009s09990	POPTR_0009s09990 (11)	scaffold_9:8704724-8704922(-) (11)	NA	NA	NA	AT2G01640.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os12g14110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4077.1.S1_at	A	A1TS	POPTR_0003s19390	POPTR_0003s19390 (11)	scaffold_3:18128211-18128749(-) (11)	NA	Q09704	Exosome complex component rrp4	AT1G03360.1	ribosomal RNA processing 4 	LOC_Os04g43922.1	"exosome complex exonuclease rrp4, putative, expressed"	Medtr8g138160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4078.1.S1_s_at	A	A1TS	POPTR_0002s21750	POPTR_0002s21750 (11)	scaffold_2:18318990-18319034(+) (11)	NA	Q9MB94	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.408.1.A1_at	A	A1TS	POPTR_0009s14840	POPTR_0009s14840 (10)	scaffold_9:11553660-11553858(+) (10)	NA	NA	NA	AT4G04190.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g33510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4080.1.A1_s_at	A	A2TS	POPTR_0006s24490	POPTR_0006s24490 (11)//POPTR_0012s11120 (11)	scaffold_12:11698749-11699371(+) (11)//scaffold_6:23082315-23082926(+) (11)	NA	Q54Y03	Probable adenylate kinase isoenzyme 6	AT5G60340.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g22950.1	"adenylate kinase isoenzyme 6, putative, expressed"	Medtr5g094960.2	"Probable adenylate kinase isoenzyme 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4082.1.S1_at	A	A1TS	POPTR_0009s13950	POPTR_0009s13950 (9)	scaffold_9:11030320-11031414(+) (9)	NA	Q5PNS9	Probable protein phosphatase 2C 64	AT4G38520.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4083.1.A1_at	A	A1TS	POPTR_0002s08530	POPTR_0002s08530 (11)	scaffold_2:5965368-5965457(+) (11)	NA	Q93ZH0	LysM domain-containing GPI-anchored protein 1	AT1G21880.2	lysm domain GPI-anchored protein 1 precursor 	LOC_Os02g53000.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	Medtr3g097500.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidoglycan-binding LysM "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.4083.1.A1_s_at	A	A1TS	POPTR_0002s08530	POPTR_0002s08530 (11)	scaffold_2:5964408-5965428(+) (11)	NA	Q93ZH0	LysM domain-containing GPI-anchored protein 1	AT1G21880.2	lysm domain GPI-anchored protein 1 precursor 	LOC_Os02g53000.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	Medtr3g097500.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidoglycan-binding LysM "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.4084.1.S1_at	A	A1TS	POPTR_0014s18890	POPTR_0014s18890 (11)	scaffold_14:16431184-16431257(+) (11)	NA	NA	NA	AT5G48655.3	RING/U-box superfamily protein 	LOC_Os01g69040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4087.1.S1_at	A	A1TS	POPTR_0008s21110	POPTR_0008s21110 (11)	scaffold_8:15243028-15243844(-) (11)	NA	Q6MEE7	tRNA pseudouridine synthase A 1	AT3G06950.1	Pseudouridine synthase family protein 	LOC_Os05g19954.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr8g133980.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.4091.1.S1_at	A	A1TS	POPTR_0014s08490	POPTR_0014s08490 (9)	scaffold_14:6303533-6304361(-) (9)	POPTR_0002s16420 (7)	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
Ptp.4093.1.S1_at	A	A1TS	POPTR_0019s06040	POPTR_0019s06040 (9)	scaffold_19:6511314-6511782(+) (9)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.4094.1.S1_at	A	A1MS	POPTR_0003s16440	POPTR_0003s16440 (10)	scaffold_3:16036674-16037261(+) (10)	NA	Q9C7E8	Zinc finger protein CONSTANS-LIKE 15	AT2G33500.2	B-box type zinc finger protein with CCT domain 	LOC_Os02g49230.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g096570.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.4095.1.S1_at	A	A2TS	POPTR_0017s04390	POPTR_0017s04390 (10)//POPTR_0017s00580 (9)	scaffold_17:319537-319970(+) (10)//scaffold_17:3390180-3390613(-) (10)	NA	Q9T076	Early nodulin-like protein 2	AT4G28365.1	early nodulin-like protein 3 	LOC_Os01g54430.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g108120.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.4096.1.S1_at	A	A1TS	POPTR_0012s01060	POPTR_0012s01060 (9)	scaffold_12:747494-749214(+) (9)	NA	O22224	Uncharacterized protein At2g41620	AT2G41620.1	Nucleoporin interacting component (Nup93/Nic96-like) family protein 	LOC_Os03g22690.1	"nucleoporin interacting component, putative, expressed"	Medtr2g125990.1	Nucleoporin interacting component 	GO:0006810|transport	NA	GO:0005643|nuclear pore
Ptp.4097.2.A1_a_at	A	A1MS	POPTR_0009s13940	POPTR_0009s13940 (11)	scaffold_9:11011118-11011215(-) (11)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4097.2.A1_at	A	A1MS	POPTR_0009s13940	POPTR_0009s13940 (9)	scaffold_9:11011165-11011324(-) (9)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4099.1.S1_at	A	A1TS	POPTR_0001s10340	POPTR_0001s10340 (10)	scaffold_1:8035723-8035986(+) (10)	NA	Q9BZJ0	Crooked neck-like protein 1	AT5G41770.1	"crooked neck protein, putative / cell cycle protein, putative "	LOC_Os05g22260.1	"crooked neck, putative, expressed"	Medtr5g009540.1	"RNA-processing protein, HAT helix "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	GO:0005622|intracellular
Ptp.41.1.A1_at	A	A1TS	POPTR_0001s10090	POPTR_0001s10090 (11)	scaffold_1:7815907-7816202(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.410.1.A1_s_at	A	A1TS	POPTR_0013s12380	POPTR_0013s12380 (11)	scaffold_13:13014436-13014665(-) (11)	NA	Q9M2K6	"Glucan endo-1,3-beta-glucosidase-like protein 1"	AT3G58100.1	plasmodesmata callose-binding protein 5 	LOC_Os06g34660.1	"X8 domain containing protein, expressed"	AC233675_22.1	X8 AC233675.1 104814-106418 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4100.1.A1_a_at	A	A1TS	POPTR_0002s07050	POPTR_0002s07050 (11)	scaffold_2:4767521-4767776(-) (11)	NA	P54772	Histidine decarboxylase	AT1G43710.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os02g33710.1	"decarboxylase, putative, expressed"	Medtr2g008250.1	Pyridoxal-dependent decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4101.1.S1_s_at	A	A1TS	POPTR_0878s00210	POPTR_0878s00210 (11)	scaffold_878:4906-4952(+) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4102.2.A1_a_at	A	A1TS	POPTR_0001s00440	POPTR_0001s00440 (11)	scaffold_1:335892-336673(-) (11)	NA	P22988	L-lactate dehydrogenase A	AT4G17260.1	Lactate/malate dehydrogenase family protein 	LOC_Os02g01510.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g012480.1	L-lactate/malate dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4105.1.A1_at	A	A1TS	POPTR_0015s03620	POPTR_0015s03620 (10)	scaffold_15:3402857-3403422(-) (10)	NA	P73689	Protease 4	AT1G73990.1	signal peptide peptidase 	LOC_Os02g49570.1	"OsProtIV1 - Putative Protease IV homologue; Domain 2 is a SPH, expressed"	Medtr2g074180.1	"Peptidase S49, SppA "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
Ptp.4106.3.A1_a_at	A	A1TS	POPTR_0002s11510	POPTR_0002s11510 (11)	scaffold_2:8559877-8560084(-) (11)	NA	NA	NA	AT3G12210.2	DNA binding 	LOC_Os03g51880.1	"GA15368-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4106.3.A1_at	A	A1MS	POPTR_0002s11510	POPTR_0002s11510 (10)	scaffold_2:8559429-8559945(-) (10)	NA	NA	NA	AT3G12210.2	DNA binding 	LOC_Os03g51880.1	"GA15368-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4107.2.S1_a_at	A	A2TS	POPTR_0007s01520	POPTR_0007s01520 (9)//POPTR_0596s00210 (9)	scaffold_596:9629-9873(+) (9)//scaffold_7:847242-847477(-) (9)	NA	Q9LJP1	GDSL esterase/lipase 4	AT3G14225.1	GDSL-motif lipase 4 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.411.1.A1_at	A	A1TS	POPTR_0005s04470	POPTR_0005s04470 (9)	scaffold_5:2989586-2990028(-) (9)	NA	Q28I38	DnaJ homolog subfamily B member 14	AT5G27240.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g27740.3	"dnaJ domain containing protein, expressed"	Medtr7g139960.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.4110.1.S1_at	A	A1TS	POPTR_0009s13460	POPTR_0009s13460 (9)	scaffold_9:10701451-10701483(+) (9)	NA	Q38896	Glycine-rich protein 2b	AT2G17870.1	cold shock domain protein 3 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.4110.1.S1_s_at	A	A1TS	POPTR_0009s13460	POPTR_0009s13460 (11)	scaffold_9:10701545-10701882(+) (11)	NA	Q38896	Glycine-rich protein 2b	AT2G17870.1	cold shock domain protein 3 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.4110.2.S1_s_at	A	A1TS	POPTR_0002s22410	POPTR_0002s22410 (11)	scaffold_2:19108751-19109511(-) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os10g31950.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4111.3.S1_s_at	A	A1TS	POPTR_0013s01640	POPTR_0013s01640 (11)	scaffold_13:930147-930520(-) (11)	NA	NA	NA	AT1G56220.3	Dormancy/auxin associated family protein 	LOC_Os03g22270.3	"auxin-repressed protein, putative, expressed"	Medtr1g099940.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4112.2.S1_at	A	A1TS	POPTR_0001s15840	POPTR_0001s15840 (11)	scaffold_1:12675700-12676787(+) (11)	POPTR_0003s07420 (7)	Q39079	Chaperone protein dnaJ 13	AT2G35720.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g36370.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g012600.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.4113.1.S1_at	A	A1TS	POPTR_0006s12280	POPTR_0006s12280 (11)	scaffold_6:9433625-9435570(+) (11)	NA	P38094	Protein fluG	AT3G53180.1	glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases 	LOC_Os10g31820.1	"fluG, putative, expressed"	Medtr3g043930.1	Glutamine synthetase type I 	GO:0006807|nitrogen compound metabolic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.4115.1.S1_at	A	A1TS	POPTR_0001s46570	POPTR_0001s46570 (11)	scaffold_1:46939875-46940168(+) (11)	NA	Q94C59	Patellin-4	AT1G30690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os06g45990.2	"patellin-5, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4116.1.S1_at	A	A1TS	POPTR_0004s21020	POPTR_0004s21020 (10)	scaffold_4:20336071-20336338(+) (10)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4116.1.S1_s_at	A	A1TS	POPTR_0004s21020	POPTR_0004s21020 (11)	scaffold_4:20336152-20336422(+) (11)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4118.1.S1_at	A	A1TS	POPTR_0018s10960	POPTR_0018s10960 (11)	scaffold_18:11787342-11788468(-) (11)	NA	Q75K12	5'-nucleotidase domain-containing protein DDB_G0275467	AT2G23890.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os09g25640.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr5g089940.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4121.1.S1_s_at	A	A1TS	POPTR_0002s25620	POPTR_0002s25620 (11)	scaffold_2:22713694-22714009(+) (11)	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4122.1.A1_at	A	A1TS	POPTR_0019s02320	POPTR_0019s02320 (11)	scaffold_19:2150341-2150851(-) (11)	NA	NA	NA	AT5G28640.1	SSXT family protein 	LOC_Os03g52320.1	"GRF-interacting factor 1, putative, expressed"	Medtr1g094100.1	SSXT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4123.1.S1_at	A	A1TS	POPTR_0008s04210	POPTR_0008s04210 (10)	scaffold_8:2365491-2365586(+) (10)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.4124.1.S1_at	A	A1TS	POPTR_0001s06740	POPTR_0001s06740 (11)	scaffold_1:5159278-5160513(-) (11)	NA	NA	NA	AT5G06970.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4125.1.S1_s_at	A	A1TS	POPTR_0001s13290	POPTR_0001s13290 (9)	scaffold_1:10384311-10384428(-) (9)	NA	NA	NA	AT2G33510.1	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). 	LOC_Os02g31140.1	"major ampullate spidroin 2-2, putative, expressed"	Medtr7g005170.1	WW/Rsp5/WWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4127.1.S1_s_at	A	A1TS	POPTR_0007s07600	POPTR_0007s07600 (11)	scaffold_7:5968337-5968406(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT3G19910.1	RING/U-box superfamily protein 	LOC_Os08g43480.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr1g143530.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.413.1.S1_at	A	A1TS	POPTR_0001s19530	POPTR_0001s19530 (11)	scaffold_1:17239826-17240843(-) (11)	NA	O96552	Charged multivesicular body protein 1	AT1G17730.1	vacuolar protein sorting 46.1 	LOC_Os06g43590.3	"SNF7 domain containing protein, putative, expressed"	Medtr2g121700.1	Snf7 	GO:0015031|protein transport	NA	NA
Ptp.4130.1.S1_s_at	A	A1TS	POPTR_0006s07310	POPTR_0006s07310 (11)	scaffold_6:5251213-5251535(-) (11)	NA	NA	NA	AT5G57123.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g44980.1	conserved hypothetical protein	Medtr2g042970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4132.1.S1_at	A	A1TS	POPTR_0018s12030	POPTR_0018s12030 (11)	scaffold_18:12647579-12648110(+) (11)	NA	P51425	60S ribosomal protein L39	AT4G31985.1	Ribosomal protein L39 family protein 	LOC_Os02g55370.1	"60S ribosomal protein L39, putative, expressed"	Medtr3g137960.1	Ribosomal protein L39e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4133.1.S1_at	A	A1TS	POPTR_0008s10350	POPTR_0008s10350 (11)	scaffold_8:6486728-6488676(+) (11)	NA	Q499W2	DNA replication complex GINS protein SLD5	AT5G49010.1	DNA replication protein-related 	LOC_Os05g05150.1	"SLD5 - Putative GINS complex subunit, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4138.1.S1_at	A	A1TS	POPTR_0004s18640	POPTR_0004s18640 (11)	scaffold_4:18458028-18458265(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT4G38430.1	rho guanyl-nucleotide exchange factor 1 	LOC_Os09g37270.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
Ptp.4139.1.S1_at	A	A1TS	POPTR_0012s13350	POPTR_0012s13350 (11)	scaffold_12:13539482-13539969(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT5G62070.1	IQ-domain 23 	LOC_Os04g48160.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g129280.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.414.1.S1_at	A	A1TS	POPTR_0017s11370	POPTR_0017s11370 (11)	scaffold_17:11133580-11133864(+) (11)//scaffold_891:1807-2010(+) (9)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4142.1.S1_s_at	A	A1TS	POPTR_0017s02990	POPTR_0017s02990 (11)	scaffold_17:2165142-2165332(+) (11)	NA	Q38851	Transcription repressor MYB6	AT4G09460.1	myb domain protein 6 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4143.1.S1_at	A	A1TS	POPTR_0016s02550	POPTR_0016s02550 (11)	scaffold_16:1253956-1254002(-) (11)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT5G05080.2	ubiquitin-conjugating enzyme 22 	LOC_Os06g45000.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g104500.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4143.1.S1_s_at	A	A1TS	POPTR_0016s02550	POPTR_0016s02550 (11)	scaffold_16:1253653-1254217(-) (11)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT5G05080.2	ubiquitin-conjugating enzyme 22 	LOC_Os06g45000.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g104500.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4145.2.A1_a_at	A	A1TS	POPTR_0008s20440	POPTR_0008s20440 (11)	scaffold_8:14191200-14192050(-) (11)	NA	Q944H2	"Protein ABCI12, chloroplastic"	AT3G21580.1	cobalt ion transmembrane transporters 	LOC_Os05g33230.1	"cobalt ion transporter, putative, expressed"	Medtr2g026300.1	Cobalt transport protein 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006824|cobalt ion transport||GO:0044283|small molecule biosynthetic process	GO:0015087|cobalt ion transmembrane transporter activity	NA
Ptp.4146.1.S1_s_at	A	A1TS	POPTR_0007s05490	POPTR_0007s05490 (11)	scaffold_7:3577242-3577532(+) (11)	NA	Q9XEE2	Annexin D2	AT5G65020.1	annexin 2 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
Ptp.4148.1.A1_at	A	A1TS	POPTR_0008s17810	POPTR_0008s17810 (11)	scaffold_8:11957850-11958187(+) (11)	NA	Q9CAG3	"Lipoxygenase 6, choloroplastic"	AT1G67560.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g08220.1	"lipoxygenase protein, putative, expressed"	AC233656_19.3	Lipoxygenase AC233656.1 68212-72891 E EGN_Mt090430 200	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.415.1.A1_at	A	A1TS	POPTR_0005s23920	POPTR_0005s23920 (9)	scaffold_5:22616218-22616738(-) (9)	NA	P42390	"Indole-3-glycerol phosphate lyase, chloroplastic"	AT3G54640.1	tryptophan synthase alpha chain 	LOC_Os07g08430.1	"indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006568|tryptophan metabolic process	GO:0004834|tryptophan synthase activity	NA
Ptp.4150.1.A1_at	A	A1TS	POPTR_0019s08280	POPTR_0019s08280 (11)	scaffold_19:9761962-9762327(+) (11)	NA	Q6P7K5	UPF0510 protein INM02	AT1G65270.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os11g16320.1	expressed protein	Medtr7g089960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4151.1.A1_s_at	A	A2TS	POPTR_0017s07350	POPTR_0017s07350 (11)//POPTR_0328s00200 (9)	scaffold_17:5703430-5703924(-) (11)//scaffold_328:11358-11846(+) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os08g39850.1	"lipoxygenase, chloroplast precursor, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.4154.1.S1_s_at	A	A1TS	POPTR_0003s06460	POPTR_0003s06460 (11)	scaffold_3:7941557-7942028(-) (11)	NA	P24465	Cytochrome P450 71A1	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4156.1.S1_a_at	A	A1TS	POPTR_0019s09700	POPTR_0019s09700 (11)	scaffold_19:11318784-11319194(+) (11)	NA	Q15427	Splicing factor 3B subunit 4	AT4G10110.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os05g35274.2	"RNA recognition motif containing protein, putative, expressed"	Medtr1g122170.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4157.1.S1_s_at	A	A1TS	POPTR_0010s08110	POPTR_0010s08110 (11)	scaffold_10:9041834-9042232(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT3G23340.1	casein kinase I-like 10 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4160.1.S1_at	A	A1TS	POPTR_0016s11810	POPTR_0016s11810 (9)	scaffold_16:10980368-10980891(+) (9)	NA	O55236	mRNA-capping enzyme	AT3G09100.2	mRNA capping enzyme family protein 	LOC_Os12g09120.1	"mRNA-capping enzyme, putative, expressed"	Medtr4g012250.1	"Dual specificity protein phosphatase; mRNA capping enzyme; Nucleic acid-binding, OB-fold, subgroup "	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0004484|mRNA guanylyltransferase activity||GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.4164.1.S1_s_at	A	A1TS	POPTR_0002s24770	POPTR_0002s24770 (9)	scaffold_2:22035523-22038260(+) (11)	NA	Q09020	Wound-induced basic protein	AT3G07230.1	wound-responsive protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4167.1.S1_at	A	A1TS	POPTR_0005s26650	POPTR_0005s26650 (9)	scaffold_5:24571344-24572290(+) (9)	NA	Q9XHM1	Eukaryotic translation initiation factor 3 subunit C	AT3G56150.2	eukaryotic translation initiation factor 3C 	LOC_Os07g03230.2	"eukaryotic translation initiation factor 3 subunit C, putative, expressed"	Medtr7g143620.1	"Proteasome component region PCI; Eukaryotic translation initiation factor 3 subunit 8, C-terminal; Eukaryotic translation initiation factor 3 subunit 8, N-terminal; Winged helix repressor DNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	GO:0005852|eukaryotic translation initiation factor 3 complex
Ptp.4168.1.S1_at	A	A1MA	POPTR_0014s06660	POPTR_0014s06660 (11)	scaffold_14:5062244-5062300(+) (11)	NA	Q9LPC6	Armadillo repeat-containing kinesin-like protein 2	AT1G01950.1	armadillo repeat kinesin 2 	LOC_Os06g04560.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.417.1.S1_s_at	A	A1TS	POPTR_0012s04090	POPTR_0012s04090 (11)	scaffold_12:3311454-3311729(+) (11)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.4170.1.S1_at	A	A1TS	POPTR_0011s09870	POPTR_0011s09870 (10)	scaffold_11:12320246-12320925(-) (10)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G06230.3	global transcription factor group E4 	LOC_Os01g11580.1	"bromodomain containing protein, expressed"	Medtr4g109460.1	Bromodomain; Protein of unknown function GLTT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4171.1.A1_at	A	A1TS	POPTR_0011s09790	POPTR_0011s09790 (11)	scaffold_11:12241971-12243986(+) (11)	NA	NA	NA	AT3G14450.1	CTC-interacting domain 9 	LOC_Os01g11120.1	"CID11, putative, expressed"	Medtr3g122880.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4172.1.A1_at	A	A1TS	POPTR_0003s19820	POPTR_0003s19820 (11)	scaffold_3:18441880-18442065(-) (11)	NA	Q8S3N1	E3 ubiquitin-protein ligase SINAT5	AT3G61790.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os07g46560.1	"seven in absentia protein family domain containing protein, expressed"	Medtr3g020180.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
Ptp.4175.1.S1_s_at	A	A1TS	POPTR_0011s11410	POPTR_0011s11410 (11)	scaffold_11:14180861-14181299(+) (11)	NA	Q9FPS2	Ubiquitin carboxyl-terminal hydrolase 25	AT3G14400.1	ubiquitin-specific protease 25 	LOC_Os05g43480.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g145470.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.4176.1.S1_at	A	A1TS	POPTR_0010s05300	POPTR_0010s05300 (11)	scaffold_10:6768096-6768294(+) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4179.1.S1_s_at	A	A1TS	POPTR_0001s16440	POPTR_0001s16440 (11)	scaffold_1:13235789-13235963(+) (11)	NA	P53569	CCAAT/enhancer-binding protein zeta	AT1G72440.1	CCAAT-binding factor 	LOC_Os09g02810.1	"CCAAT/enhancer-binding protein, putative, expressed"	Medtr8g138880.1	CBF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4180.1.A1_a_at	A	A1TS	POPTR_0008s00500	POPTR_0008s00500 (11)	scaffold_8:207629-207885(-) (11)	NA	NA	NA	AT3G20260.1	Protein of unknown function (DUF1666) 	LOC_Os08g40820.2	expressed protein	Medtr4g158140.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4182.1.S1_at	A	A1TS	POPTR_0001s04590	POPTR_0001s04590 (11)	scaffold_1:3577325-3577854(-) (11)	NA	NA	NA	AT2G44290.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g07100.1	"LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g133890.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4184.1.S1_s_at	A	A1TS	POPTR_0006s00280	POPTR_0006s00280 (11)	scaffold_6:60651-61165(+) (11)	NA	P54567	Uncharacterized protein yqkD	AT4G17150.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g40730.1	"protein with a conserved N-terminal region, putative, expressed"	Medtr2g033450.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4185.1.S1_at	A	A1TS	POPTR_0006s29080	POPTR_0006s29080 (11)	scaffold_6:26574059-26574513(+) (11)	NA	Q9S9K9	Transcription factor MYB3	AT1G22640.1	myb domain protein 3 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4186.1.A1_s_at	A	A1TS	POPTR_0005s25240	POPTR_0005s25240 (11)	scaffold_5:23542937-23543583(-) (11)	NA	Q9SFZ3	Transcription factor bHLH110	AT1G27660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01600.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4187.1.S1_at	A	A1TS	POPTR_0009s15010	POPTR_0009s15010 (11)	scaffold_9:11648781-11648824(-) (11)	NA	P27880	18.2 kDa class I heat shock protein	AT2G29500.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067320.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4188.1.S1_at	A	A1TS	POPTR_0014s09400	POPTR_0014s09400 (11)	scaffold_14:6971724-6973318(-) (11)	NA	Q9M364	Histone-lysine N-methyltransferase ATX3	AT3G61740.2	SET domain protein 14 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4188.1.S1_s_at	A	A2TS	POPTR_0002s17180	POPTR_0002s17180 (11)//POPTR_0014s09400 (11)	scaffold_14:6971894-6973622(-) (11)//scaffold_2:12946852-12948748(-) (11)	NA	Q9M364	Histone-lysine N-methyltransferase ATX3	AT3G61740.2	SET domain protein 14 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4190.1.S1_at	A	A1TS	POPTR_0001s14040	POPTR_0001s14040 (11)	scaffold_1:11052813-11052952(+) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.4190.1.S1_x_at	A	A1TS	POPTR_0001s14040	POPTR_0001s14040 (11)	scaffold_1:11052083-11052952(+) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.4191.1.A1_at	A	A1TS	POPTR_0003s04320	POPTR_0003s04320 (10)	scaffold_3:5027907-5028648(-) (10)	NA	Q5HWH7	5'-nucleotidase surE	AT1G72880.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os01g51280.1	"5-nucleotidase surE, putative, expressed"	Medtr2g120880.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
Ptp.4193.1.S1_at	A	A1TS	POPTR_0003s09720	POPTR_0003s09720 (11)	scaffold_3:10971617-10971949(-) (11)	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4193.2.S1_s_at	A	A2TS	POPTR_0001s01760	POPTR_0003s09720 (11)//POPTR_0001s01760 (11)	scaffold_1:1282867-1283027(+) (11)//scaffold_3:10973419-10973579(-) (11)	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4194.1.S1_x_at	A	A1TS	POPTR_0005s14680	POPTR_0005s14680 (9)	scaffold_5:11681085-11681253(+) (9)	NA	Q1S9I9	Probable histone H2B.1	AT3G45980.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.4195.1.S1_at	A	A1TS	POPTR_0006s11860	POPTR_0006s11860 (11)	scaffold_18:1498489-1498891(+) (9)//scaffold_6:9050295-9051232(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.4197.1.S1_s_at	A	A1TS	POPTR_0015s07550	POPTR_0015s07550 (11)	scaffold_15:8839388-8839687(+) (11)	NA	Q40255	Probable aldehyde dehydrogenase	AT5G62530.1	aldehyde dehydrogenase 12A1 	LOC_Os05g45960.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g112760.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4199.1.S1_s_at	A	A1TS	POPTR_0016s14520	POPTR_0016s14520 (10)	scaffold_16:13724471-13724969(-) (10)	NA	NA	NA	AT5G01910.1	unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4200.1.S1_s_at	A	A1TS	POPTR_0007s04160	POPTR_0007s04160 (11)	scaffold_7:2508287-2508969(+) (11)	NA	P49107	"Photosystem I reaction center subunit N, chloroplastic"	AT5G64040.1	"photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) "	LOC_Os12g08770.1	"photosystem I reaction center subunit N, chloroplast precursor, putative, expressed"	Medtr3g144130.1	Photosystem I reaction centre subunit N 	GO:0015979|photosynthesis	GO:0005515|protein binding	GO:0042651|thylakoid membrane||GO:0009522|photosystem I
Ptp.4201.1.S1_s_at	A	A1TS	POPTR_0010s16860	POPTR_0010s16860 (11)	scaffold_10:15680864-15681342(-) (11)	NA	NA	NA	AT2G03440.1	nodulin-related protein 1 	LOC_Os03g11220.1	"keratin, type I cytoskeletal 9, putative, expressed"	Medtr4g115540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4202.1.S1_s_at	A	A1TS	POPTR_0015s12220	POPTR_0015s12220 (11)	scaffold_15:12571834-12573444(+) (11)	NA	Q84WM7	Pectinesterase PPME1	AT1G69940.1	Pectin lyase-like superfamily protein 	LOC_Os12g37660.1	"pectinesterase, putative, expressed"	Medtr8g133070.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
Ptp.4203.1.S1_at	A	A1TS	POPTR_0005s22070	POPTR_0005s22070 (11)	scaffold_5:21075653-21075732(-) (11)	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4203.1.S1_s_at	A	A1TS	POPTR_0005s22070	POPTR_0005s22070 (11)	scaffold_5:21071248-21073615(-) (11)	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4205.1.S1_at	A	A1TS	POPTR_0002s11120	POPTR_0002s11120 (9)	scaffold_2:8143571-8143987(-) (9)	NA	O81635	Kinesin-4	AT2G22610.1	Di-glucose binding protein with Kinesin motor domain 	LOC_Os03g02290.1	"kinesin motor domain containing protein, putative, expressed"	Medtr5g032890.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.4207.1.A1_at	A	A1TS	POPTR_0007s04470	POPTR_0007s04470 (9)	scaffold_7:2764506-2764808(-) (9)	NA	NA	NA	AT5G09270.2	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g64190.1	expressed protein	Medtr1g124960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.421.1.A1_at	A	A1TS	POPTR_0008s10700	POPTR_0008s10700 (11)	scaffold_8:6719597-6721124(+) (11)	NA	P72740	Dihydrolipoyl dehydrogenase	AT3G16950.1	lipoamide dehydrogenase 1 	LOC_Os01g23610.1	"dihydrolipoyl dehydrogenase, putative, expressed"	Medtr8g137840.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
Ptp.4212.1.S1_a_at	A	A1TS	POPTR_0014s16220	POPTR_0014s16220 (11)	scaffold_14:12312632-12314156(+) (11)	NA	Q9SI37	WRKY transcription factor 1	AT2G04880.2	zinc-dependent activator protein-1 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.4213.1.S1_at	A	A1TS	POPTR_0018s14880	POPTR_0018s14880 (9)	scaffold_18:14909621-14910818(+) (9)	NA	NA	NA	AT5G58210.4	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g42550.1	expressed protein	Medtr6g083870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4215.1.S1_at	A	A1TS	POPTR_0008s11340	POPTR_0008s11340 (9)	scaffold_8:7187721-7188228(+) (9)	NA	Q9CA40	Nudix hydrolase 1	AT1G68760.1	nudix hydrolase  1 	NA	NA	Medtr5g071730.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4216.1.S1_at	A	A1TS	POPTR_0002s10790	POPTR_0002s10790 (9)	scaffold_2:7837324-7837385(+) (9)	NA	Q9VTG7	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	AT1G27600.2	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os10g13810.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr3g127830.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
Ptp.4217.2.S1_s_at	A	A1TS	POPTR_0003s20130	POPTR_0003s20130 (11)	scaffold_3:18719460-18719641(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os07g46670.3	"early response to dehydration 15, putative, expressed"	Medtr3g026140.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4218.1.S1_s_at	A	A1TS	POPTR_0010s16060	POPTR_0010s16060 (11)	scaffold_10:15122282-15122384(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4219.1.S1_s_at	A	A1TS	POPTR_0011s04710	POPTR_0011s04710 (11)	scaffold_11:4684394-4684754(-) (11)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4220.2.S1_a_at	A	A1TS	POPTR_0001s09860	POPTR_0001s09860 (11)	scaffold_1:7613849-7614406(-) (11)	NA	Q9CAK8	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic"	AT1G63970.1	isoprenoid F 	LOC_Os02g45660.1	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed"	Medtr5g010080.1	MECDP-synthase 	GO:0016114|terpenoid biosynthetic process	"GO:0008685|""2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"""	NA
Ptp.4221.1.A1_at	A	A1TS	POPTR_0001s45920	POPTR_0001s45920 (11)	scaffold_1:46428896-46428972(+) (11)	NA	Q9SV84	Probable aquaporin NIP5-1	AT4G10380.1	NOD26-like intrinsic protein 5;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4221.1.A1_x_at	A	A1TS	POPTR_0001s45920	POPTR_0001s45920 (11)	scaffold_1:46428898-46429180(+) (11)	NA	Q9SV84	Probable aquaporin NIP5-1	AT4G10380.1	NOD26-like intrinsic protein 5;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4229.1.S1_s_at	A	A1TS	POPTR_0016s13190	POPTR_0016s13190 (11)	scaffold_16:12440167-12440558(+) (11)	NA	NA	NA	AT5G01590.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr4g012040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4230.1.S1_at	A	A1TS	POPTR_0011s03770	POPTR_0011s03770 (10)	scaffold_11:3828450-3828973(-) (10)	NA	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT4G21380.1	receptor kinase 3 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011240.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4232.1.S1_s_at	A	A1TS	POPTR_0016s11980	POPTR_0016s11980 (11)	scaffold_16:11156888-11157019(+) (11)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4233.1.S1_at	A	A1TS	POPTR_0001s27200	POPTR_0001s27200 (9)	scaffold_1:26114746-26115200(+) (10)	NA	NA	NA	AT3G08020.1	PHD finger family protein 	LOC_Os12g34330.1	"protein binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4235.1.S1_at	A	A1TS	POPTR_0015s05090	POPTR_0015s05090 (11)	scaffold_15:5405238-5405874(-) (11)	NA	Q9LD37	"Probable cyclic nucleotide-gated ion channel 20, chloroplastic"	AT3G17700.1	cyclic nucleotide-binding transporter 1 	LOC_Os02g53340.2	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr6g074020.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.4237.1.S1_at	A	A1TS	POPTR_0003s11430	POPTR_0003s11430 (11)	scaffold_3:12236431-12236550(-) (11)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4237.1.S1_s_at	A	A1TS	POPTR_0003s11430	POPTR_0003s11430 (11)	scaffold_3:12236385-12236498(-) (11)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4238.1.S1_s_at	A	A1TS	POPTR_0016s08670	POPTR_0016s08670 (11)	scaffold_16:6470271-6470648(+) (11)	NA	NA	NA	AT3G09670.2	Tudor/PWWP/MBT superfamily protein 	LOC_Os11g19810.2	"PWWP domain containing protein, expressed"	Medtr1g086970.1	PWWP; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4239.1.A1_at	A	A1TS	POPTR_0001s06100	POPTR_0001s06100 (11)	scaffold_1:4739921-4740432(-) (11)	NA	NA	NA	AT3G13650.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	Medtr3g040700.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.424.1.A1_a_at	A	A1TS	POPTR_0009s12720	POPTR_0009s12720 (11)	scaffold_9:10331771-10332631(+) (11)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT4G08350.1	global transcription factor group A2 	LOC_Os02g53230.1	"transcription elongation factor SPT5 homolog 1, putative, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.424.2.A1_s_at	A	A2TS	POPTR_0009s12720	POPTR_0009s12720 (11)//POPTR_0004s16940 (9)	scaffold_4:17318185-17320913(+) (9)//scaffold_9:10329526-10332567(+) (11)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT4G08350.1	global transcription factor group A2 	LOC_Os02g53230.1	"transcription elongation factor SPT5 homolog 1, putative, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4240.1.A1_at	A	A1MS	POPTR_0006s07990	POPTR_0006s07990 (10)	scaffold_6:5846421-5846818(+) (11)	NA	Q605C1	30S ribosomal protein S17	AT1G49400.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os08g27090.1	"ribosomal protein S17, putative, expressed"	Medtr6g005050.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4240.2.A1_a_at	A	A2TS	POPTR_0018s14700	POPTR_0018s14700 (11)//POPTR_0006s07990 (10)	scaffold_18:14817814-14818177(+) (11)//scaffold_6:5845952-5846305(+) (11)	NA	A7HM43	30S ribosomal protein S17	AT1G49400.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os08g27090.1	"ribosomal protein S17, putative, expressed"	Medtr6g005050.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4240.3.A1_at	A	A1TS	POPTR_0018s14700	POPTR_0018s14700 (11)	scaffold_18:14818211-14818829(+) (11)	NA	A7HM43	30S ribosomal protein S17	AT1G49400.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os08g27090.1	"ribosomal protein S17, putative, expressed"	Medtr6g005050.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4243.1.S1_at	A	A1TS	POPTR_0006s26820	POPTR_0006s26820 (11)	scaffold_6:24908084-24910131(+) (11)	NA	O22969	Uncharacterized protein At2g34160	AT2G34160.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4244.1.S1_s_at	A	A1TS	POPTR_0005s11690	POPTR_0005s11690 (11)	scaffold_5:8518626-8519126(-) (11)	NA	Q3TSG4	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4245.1.S1_at	A	A1TS	POPTR_0004s20930	POPTR_0004s20930 (11)	scaffold_4:20287263-20287928(+) (11)	NA	Q9DE26	RuvB-like 1	AT5G22330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g62040.1	"ruvB-like, putative, expressed"	Medtr3g140320.1	"AAA ATPase; TIP49, C-terminal "	NA	GO:0003678|DNA helicase activity||GO:0005524|ATP binding	NA
Ptp.4246.1.S1_s_at	A	A1TS	POPTR_0003s15280	POPTR_0003s15280 (10)	scaffold_3:15121450-15127048(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.4250.1.S1_at	A	A1TS	POPTR_0011s15980	POPTR_0011s15980 (11)	scaffold_11:17973204-17973837(+) (11)	NA	A4FV84	mRNA turnover protein 4 homolog	AT1G25260.1	Ribosomal protein L10 family protein 	LOC_Os11g01420.1	"ribosomal protein L10, putative, expressed"	Medtr2g007880.1	Ribosomal protein L10 	GO:0042254|ribosome biogenesis	NA	GO:0005622|intracellular
Ptp.4255.1.S1_at	A	A1TS	POPTR_0006s11580	POPTR_0006s11580 (11)	scaffold_6:8785516-8786075(-) (11)	NA	Q0DCT8	Protein kinase G11A	AT3G52890.2	KCBP-interacting protein kinase 	LOC_Os12g29580.1	"AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr7g126960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4256.1.S1_at	A	A1TS	POPTR_0002s26400	POPTR_0002s26400 (11)	scaffold_2:23374491-23374866(-) (11)	POPTR_0014s17920 (7)	Q8L5U0	COP9 signalosome complex subunit 4	AT5G42970.1	Proteasome component (PCI) domain protein 	LOC_Os03g10120.2	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4256.1.S1_s_at	A	A1TS	POPTR_0002s26400	POPTR_0002s26400 (11)	scaffold_2:23373010-23374484(-) (11)	POPTR_0014s17920 (6)	Q8L5U0	COP9 signalosome complex subunit 4	AT5G42970.1	Proteasome component (PCI) domain protein 	LOC_Os03g10120.2	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4257.1.A1_at	A	A1TS	POPTR_0019s03540	POPTR_0019s03540 (11)	scaffold_19:3630337-3630385(+) (11)	NA	NA	NA	AT5G28490.1	Protein of unknown function (DUF640) 	LOC_Os06g46030.1	"DUF640 domain containing protein, putative, expressed"	Medtr5g080780.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4258.1.A1_at	A	A1TS	POPTR_0010s23570	POPTR_0010s23570 (11)	scaffold_10:20105758-20108409(-) (11)	NA	Q93Z04	Probable pectate lyase 13	AT5G04310.1	Pectin lyase-like superfamily protein 	LOC_Os10g31910.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.426.1.A1_s_at	A	A1TS	POPTR_0001s37580	POPTR_0001s37580 (11)	scaffold_1:36548842-36549139(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4262.1.S1_at	A	A1TS	POPTR_0017s13360	POPTR_0017s13360 (11)	scaffold_17:13541072-13541796(-) (11)	NA	Q9SRU7	"Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 2"	AT3G02320.1	"N2,N2-dimethylguanosine tRNA methyltransferase "	LOC_Os03g57280.1	"N-dimethylguanosine tRNA methyltransferase, putative, expressed"	NA	NA	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004809|tRNA (guanine-N2-)-methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.4263.1.A1_at	A	A1TS	POPTR_0001s09300	POPTR_0001s09300 (11)	scaffold_1:7098021-7098465(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT1G63470.1	AT hook motif DNA-binding family protein 	LOC_Os02g57820.1	"AT hook motif domain containing protein, expressed"	Medtr5g010440.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
Ptp.4265.1.A1_at	A	A1TS	POPTR_0014s16150	POPTR_0014s16150 (11)	scaffold_14:12214343-12214540(-) (11)	NA	Q9BYX2	TBC1 domain family member 2A	AT3G07890.2	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os08g25010.1	"TBC domain containing protein, expressed"	Medtr5g105820.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.4267.1.S1_at	A	A1TS	POPTR_0001s19180	POPTR_0001s19180 (11)	scaffold_1:16622953-16623030(-) (11)	NA	P27061	Acid phosphatase 1	AT4G25150.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr8g016170.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
Ptp.427.1.S1_at	A	A1TS	POPTR_0008s04090	POPTR_0008s04090 (11)	scaffold_8:2278826-2279919(-) (11)	NA	Q9LJZ5	Ubiquitin-conjugating enzyme E2 19	AT3G20060.1	ubiquitin-conjugating enzyme19 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr1g121450.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4270.1.S1_s_at	A	A1TS	POPTR_0014s00340	POPTR_0014s00340 (11)	scaffold_14:145172-145839(+) (11)	NA	Q6R2K1	Protein STRUBBELIG-RECEPTOR FAMILY 5	AT1G78980.1	STRUBBELIG-receptor family 5 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g163300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4271.1.S1_at	A	A1TS	POPTR_0003s22130	POPTR_0003s22130 (10)	scaffold_3:20054510-20054543(-) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010460.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4272.1.S1_at	A	A1TS	POPTR_0007s13250	POPTR_0007s13250 (10)	scaffold_7:13364992-13365324(-) (10)	NA	Q9SBK6	Jasmonate O-methyltransferase	AT4G36470.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50480.1	"SAM dependent carboxyl methyltransferase, putative"	Medtr5g048660.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.4273.1.A1_at	A	A1TS	POPTR_0006s14580	POPTR_0006s14580 (11)	scaffold_6:11917962-11918343(+) (11)	NA	NA	NA	AT2G28230.1	TATA-binding related factor (TRF) of subunit 20 of Mediator complex 	LOC_Os09g27140.2	expressed protein	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.4275.2.S1_at	A	A1TS	POPTR_0011s11640	POPTR_0011s11640 (11)	scaffold_11:14441296-14441355(+) (11)	NA	Q9FN32	Protein yippee-like At5g53940	AT5G53940.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g025460.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4278.1.S1_at	A	A1TS	POPTR_0011s16510	POPTR_0011s16510 (10)	scaffold_11:18387070-18387327(-) (10)	NA	NA	NA	AT4G20880.1	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) 	NA	NA	AC147501_24.1	"Putative transcription factor, AC147501.9 100411-98848 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.428.1.A1_at	A	A1TS	POPTR_0006s01600	POPTR_0006s01600 (11)	scaffold_6:971861-972520(+) (11)	NA	P54928	Inositol monophosphatase 3	AT3G02870.1	Inositol monophosphatase family protein 	LOC_Os03g39000.2	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
Ptp.4282.1.S1_s_at	A	A2TS	POPTR_0001s32200	POPTR_0001s32200 (11)//POPTR_0017s08190 (11)	scaffold_1:30618060-30618694(+) (11)//scaffold_17:6653934-6654517(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT4G13640.1	Homeodomain-like superfamily protein 	LOC_Os09g12750.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4282.3.S1_s_at	A	A1TS	POPTR_0001s32200	POPTR_0001s32200 (11)	scaffold_1:30619417-30619733(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT4G13640.1	Homeodomain-like superfamily protein 	LOC_Os09g12750.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4284.1.S1_s_at	A	A1TS	POPTR_0019s10590	POPTR_0019s10590 (11)	scaffold_19:12135586-12135759(-) (11)	NA	P54120	Protein AIG1	AT1G33970.5	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g35130.2	"AIG1, putative, expressed"	Medtr4g033020.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4287.1.S1_s_at	A	A1TS	POPTR_0006s25390	POPTR_0006s25390 (11)	scaffold_6:23787115-23787862(-) (11)	NA	Q39123	Homeobox-leucine zipper protein ATHB-8	AT4G32880.1	homeobox gene 8 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr3g130470.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.429.1.A1_s_at	A	A1TS	POPTR_0008s01320	POPTR_0008s01320 (11)	scaffold_8:642915-642966(+) (11)	NA	Q9CAF5	"ABC transporter I family member 6, chloroplastic"	AT3G10670.1	non-intrinsic ABC protein 7 	LOC_Os03g21490.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g161030.1	FeS assembly ATPase SufC 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.4290.1.S1_at	A	A1TS	POPTR_0010s11850	POPTR_0010s11850 (11)	scaffold_10:12004978-12005018(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4290.1.S1_s_at	A	A1TS	POPTR_0010s11850	POPTR_0010s11850 (11)	scaffold_10:12005082-12005154(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4290.1.S1_x_at	A	A1TS	POPTR_0010s11850	POPTR_0010s11850 (11)	scaffold_10:12004969-12005125(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4291.1.S1_at	A	A1TS	POPTR_0017s10860	POPTR_0017s10860 (9)	scaffold_17:10398675-10398882(-) (9)	NA	Q9FL07	RING-H2 finger protein ATL46	AT5G40250.1	RING/U-box superfamily protein 	LOC_Os02g50930.1	"RING-H2 finger protein, putative, expressed"	Medtr5g035920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4294.1.S1_at	A	A1TS	POPTR_0019s07820	POPTR_0019s07820 (11)	scaffold_19:9044008-9047308(-) (11)	NA	Q9M9M9	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	AT3G03100.1	"NADH:ubiquinone oxidoreductase, 17.2kDa subunit "	LOC_Os10g42840.1	"NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed"	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity||GO:0009055|electron carrier activity	GO:0016020|membrane
Ptp.4295.1.S1_at	A	A1TS	POPTR_0002s25620	POPTR_0002s25620 (11)	scaffold_2:22713210-22713264(+) (11)	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4295.2.S1_s_at	A	A1TS	POPTR_0002s25620	POPTR_0002s25620 (10)	scaffold_2:22712162-22712299(+) (10)	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4296.1.S1_at	A	A1MS	POPTR_0001s35190	POPTR_0001s35190 (10)	scaffold_1:33482320-33482507(-) (10)	NA	Q9FUZ2	"Peptide deformylase 1B, chloroplastic"	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
Ptp.4296.2.S1_at	A	A1TS	POPTR_0001s35190	POPTR_0001s35190 (11)	scaffold_1:33482302-33485920(-) (11)	NA	Q9FUZ2	"Peptide deformylase 1B, chloroplastic"	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
Ptp.43.1.S1_at	A	A1TS	POPTR_0016s01010	POPTR_0016s01010 (11)	scaffold_16:402026-404284(-) (11)	NA	B9IH36	UPF0497 membrane protein 5	AT2G35760.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g10030.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr2g030530.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.430.1.A1_at	A	A1TS	POPTR_0001s25440	POPTR_0001s25440 (11)	scaffold_1:24557705-24557854(+) (11)//scaffold_1:24568572-24568723(+) (11)//scaffold_2100:3631-3782(-) (11)	NA	NA	NA	AT5G01120.1	Protein of unknown function (DUF674) 	LOC_Os04g50800.1	expressed protein	Medtr2g085240.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4300.1.S1_s_at	A	A1TS	POPTR_0006s25030	POPTR_0006s25030 (11)	scaffold_6:23476081-23476476(-) (11)	NA	O82804	Protein EARLY FLOWERING 3	AT2G25930.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g38530.1	"ELF3 protein, putative, expressed"	Medtr3g140450.1	"early flowering 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4301.1.S1_s_at	A	A1TS	POPTR_0005s08350	POPTR_0005s08350 (11)	scaffold_5:5755308-5755736(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4301.2.S1_at	A	A1MS	POPTR_0005s08350	POPTR_0005s08350 (9)	scaffold_5:5757379-5757663(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4302.1.S1_s_at	A	A1TS	POPTR_0015s06880	POPTR_0015s06880 (11)	scaffold_15:7906517-7906569(-) (11)	NA	Q9SD84	"Glucan endo-1,3-beta-glucosidase-like protein 3"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4305.1.S1_s_at	A	A1TS	POPTR_0017s13090	POPTR_0017s13090 (11)	scaffold_17:13263021-13263920(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os11g41150.1	"nitrilase-associated protein, putative, expressed"	Medtr7g025650.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4306.1.S1_at	A	A1TS	POPTR_0012s01250	POPTR_0012s01250 (11)	scaffold_12:870264-870486(+) (11)	NA	P35133	Ubiquitin-conjugating enzyme E2 10	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4308.1.S1_at	A	A1TA	POPTR_0011s16160	POPTR_0011s16160 (11)	scaffold_11:18088755-18089269(-) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30700.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.431.1.A1_at	A	A1TS	POPTR_0009s09260	POPTR_0009s09260 (11)	scaffold_9:8273216-8273686(+) (11)	NA	Q9FMF5	Root phototropism protein 3	AT2G14820.1	Phototropic-responsive NPH3 family protein 	LOC_Os12g39380.1	"BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr1g135040.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.4311.1.S1_at	A	A1TS	POPTR_0005s02760	POPTR_0005s02760 (11)	scaffold_5:1767948-1770082(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4312.1.S1_s_at	A	A1TS	POPTR_0001s07890	POPTR_0001s07890 (11)	scaffold_1:5981321-5982048(+) (11)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4315.1.S1_at	A	A1TS	POPTR_0006s00640	POPTR_0006s00640 (10)	scaffold_6:336594-337056(-) (10)	NA	Q32L00	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3	AT2G22260.1	"oxidoreductase, 2OG-Fe(II) oxygenase family protein "	LOC_Os06g17830.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g032760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4316.1.S1_a_at	A	A1TS	POPTR_0018s12330	POPTR_0018s12330 (11)	scaffold_18:12823670-12823800(-) (11)	NA	P42733	40S ribosomal protein S11-3	AT5G23740.1	ribosomal protein S11-beta 	LOC_Os08g10608.1	"ribosomal protein S17, putative, expressed"	Medtr8g092770.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4318.1.S1_s_at	A	A1TS	POPTR_0001s20390	POPTR_0001s20390 (11)	scaffold_1:18306343-18309095(+) (11)	NA	Q84LG4	Coatomer subunit zeta-2	AT4G08520.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr8g020930.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.4320.1.S1_at	A	A1TS	POPTR_0001s45000	POPTR_0001s45000 (11)	scaffold_1:45318020-45318759(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT4G27000.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g37270.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4321.1.S1_at	A	A1TS	POPTR_0006s06730	POPTR_0006s06730 (9)	scaffold_6:4869372-4869886(+) (9)	NA	A1L272	Equilibrative nucleoside transporter 4	AT1G02630.1	Nucleoside transporter family protein 	LOC_Os08g10450.1	"nucleoside transporter, putative, expressed"	Medtr8g120640.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
Ptp.4322.1.S1_at	A	A1TS	POPTR_0009s02830	POPTR_0009s02830 (10)	scaffold_9:3584176-3584524(+) (10)	NA	Q91YT2	RING finger protein 185	AT2G44410.1	RING/U-box superfamily protein 	LOC_Os01g61420.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g031580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4325.1.S1_s_at	A	A1TS	POPTR_0003s03400	POPTR_0003s03400 (11)	scaffold_3:3783752-3783788(-) (11)	NA	NA	NA	AT4G17670.1	Protein of unknown function (DUF581) 	LOC_Os04g49660.1	"DUF581 domain containing protein, expressed"	Medtr5g013920.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4327.1.S1_s_at	A	A1TS	POPTR_0006s14170	POPTR_0006s14170 (11)	scaffold_6:11499775-11500214(-) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G42950.1	Pectin lyase-like superfamily protein 	LOC_Os09g26800.1	"polygalacturonase, putative, expressed"	Medtr2g050070.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.4329.1.S1_s_at	A	A1TS	POPTR_0011s16680	POPTR_0011s16680 (11)	scaffold_11:18472305-18473244(+) (11)	NA	NA	NA	AT1G56200.2	embryo defective 1303 	NA	NA	Medtr3g079930.1	"EMB1303, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.433.1.A1_at	A	A1TS	POPTR_0001s03060	POPTR_0001s03060 (10)	scaffold_1:2412512-2413288(-) (10)	NA	Q9M9S4	Probable LRR receptor-like serine/threonine-protein kinase At1g14390	AT1G14390.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g38970.1	expressed protein	Medtr5g039640.1	Protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.4330.1.S1_a_at	A	A1TS	POPTR_0012s13060	POPTR_0012s13060 (11)	scaffold_12:13361486-13362329(+) (11)	NA	Q9M352	60S ribosomal protein L36-2	AT3G53740.4	Ribosomal protein L36e family protein 	LOC_Os05g38520.4	"60S ribosomal protein L36-2, putative, expressed"	Medtr1g126960.2	Ribosomal protein L36E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4331.1.S1_at	A	A1TS	POPTR_0012s07830	POPTR_0012s07830 (11)	scaffold_12:8777368-8777667(-) (11)	NA	Q9SIP7	40S ribosomal protein S3-1	AT2G31610.1	Ribosomal protein S3 family protein 	LOC_Os07g41750.1	"40S ribosomal protein S3-1, putative, expressed"	Medtr1g069030.1	Eukaryotic/archaeal ribosomal protein S3 	NA	GO:0003723|RNA binding	NA
Ptp.4333.1.S1_s_at	A	A1TS	POPTR_0009s09220	POPTR_0009s09220 (11)	scaffold_9:8229843-8232335(-) (11)	NA	Q9N4Y9	Zinc finger protein-like 1 homolog	AT2G14835.2	RING/U-box superfamily protein 	LOC_Os10g20600.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g135130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4334.1.S1_s_at	A	A1TS	POPTR_0001s05070	POPTR_0001s05070 (11)	scaffold_1:3899122-3899464(-) (11)	NA	Q7F8R0	Zinc finger CCCH domain-containing protein 14	AT3G12130.1	KH domain-containing protein / zinc finger (CCCH type) family protein 	LOC_Os02g10080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g111840.1	"Zinc finger, CCCH-type; KH, type 1 "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
Ptp.4335.1.S1_at	A	A1TS	POPTR_0006s01040	POPTR_0006s01040 (11)	scaffold_6:595197-595407(+) (11)	NA	P52427	Proteasome subunit alpha type-4	AT3G22110.1	20S proteasome alpha subunit C1 	LOC_Os06g07140.1	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4336.1.S1_at	A	A1TS	POPTR_0016s07640	POPTR_0016s07640 (11)	scaffold_16:5481575-5482799(+) (11)	NA	Q5ASQ0	Peptidyl-prolyl cis-trans isomerase-like 1	AT2G36130.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g44520.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.4336.1.S1_x_at	A	A1TS	POPTR_0016s07640	POPTR_0016s07640 (11)	scaffold_16:5481575-5482885(+) (11)	NA	Q5ASQ0	Peptidyl-prolyl cis-trans isomerase-like 1	AT2G36130.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g44520.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.4338.1.S1_at	A	A1TS	POPTR_0010s09810	POPTR_0010s09810 (11)	scaffold_10:10429665-10429708(-) (11)	NA	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4341.1.S1_at	A	A1TS	POPTR_0009s02400	POPTR_0009s02400 (11)	scaffold_9:3153629-3155572(+) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT5G21090.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g59440.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g094910.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.4342.1.S1_at	A	A1TS	POPTR_0002s24310	POPTR_0002s24310 (11)	scaffold_2:21702940-21703139(-) (11)	NA	Q6ICB0	PPPDE peptidase domain-containing protein 2	AT3G07090.1	PPPDE putative thiol peptidase family protein 	LOC_Os02g56900.1	"thioredoxin family protein, putative, expressed"	Medtr7g064580.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4342.1.S1_x_at	A	A1TS	POPTR_0002s24310	POPTR_0002s24310 (11)	scaffold_2:21702655-21703138(-) (11)	NA	Q6ICB0	PPPDE peptidase domain-containing protein 2	AT3G07090.1	PPPDE putative thiol peptidase family protein 	LOC_Os02g56900.1	"thioredoxin family protein, putative, expressed"	Medtr7g064580.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4343.1.S1_at	A	A1TS	POPTR_0017s02410	POPTR_0017s02410 (10)	scaffold_17:1747507-1748107(+) (10)	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os04g53620.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4343.1.S1_s_at	A	A1TS	POPTR_0017s02410	POPTR_0017s02410 (11)	scaffold_17:1748106-1748241(+) (11)	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os04g53620.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4344.1.S1_at	A	A1TS	POPTR_0014s17940	POPTR_0014s17940 (11)	scaffold_14:14494087-14495312(-) (11)	NA	NA	NA	AT5G42960.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g63860.1	"DANA2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4345.1.S1_at	A	A1TS	POPTR_0016s02600	POPTR_0016s02600 (10)	scaffold_16:1281514-1282931(-) (10)	NA	Q93YF5	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1"	AT1G73100.1	SU(VAR)3-9 homolog 3 	LOC_Os05g41172.2	"histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed"	Medtr7g105180.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.4346.1.S1_at	A	A1TS	POPTR_0008s05310	POPTR_0008s05310 (11)	scaffold_8:3086494-3088161(+) (11)	NA	NA	NA	AT5G59613.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). 	LOC_Os03g40920.1	expressed protein	Medtr2g114440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4346.1.S1_x_at	A	A1TS	POPTR_0008s05310	POPTR_0008s05310 (11)	scaffold_8:3086494-3088161(+) (11)	NA	NA	NA	AT5G59613.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). 	LOC_Os03g40920.1	expressed protein	Medtr2g114440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4348.1.A1_at	A	A1TS	POPTR_0013s04050	POPTR_0013s04050 (9)	scaffold_13:2680463-2680865(-) (9)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os12g40530.1	"transposon protein, putative, unclassified, expressed"	Medtr1g094000.1	"Plant MuDR transposase; Zinc finger, PMZ-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.435.1.A1_a_at	A	A1TS	POPTR_0002s24100	POPTR_0002s24100 (11)	scaffold_2:21544475-21544627(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4350.1.S1_at	A	A1TS	POPTR_0008s01000	POPTR_0008s01000 (11)	scaffold_8:468361-468599(-) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT1G17745.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os06g44460.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
Ptp.4358.1.S1_at	A	A1TS	POPTR_0009s10160	POPTR_0009s10160 (9)	scaffold_9:8800457-8800945(-) (9)	NA	NA	NA	AT5G67210.1	Protein of unknown function (DUF579) 	LOC_Os06g47310.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr4g130370.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4361.1.S1_s_at	A	A1TS	POPTR_0008s09680	POPTR_0008s09680 (11)	scaffold_8:5987142-5987373(+) (11)	NA	Q9LMX8	Probable 6-phosphogluconolactonase 1	AT1G13700.1	6-phosphogluconolactonase 1 	LOC_Os07g41280.3	"6-phosphogluconolactonase, putative, expressed"	Medtr5g047620.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4362.1.S1_at	A	A1TS	POPTR_0017s07940	POPTR_0017s07940 (10)	scaffold_17:6322450-6323035(-) (10)	POPTR_0017s07920 (7)//POPTR_0017s07880 (7)//POPTR_0017s07900 (6)	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4363.1.S1_at	A	A1TS	POPTR_0010s13460	POPTR_0010s13460 (9)	scaffold_10:13283903-13284437(+) (9)	NA	NA	NA	AT1G13380.1	Protein of unknown function (DUF1218) 	LOC_Os09g10910.3	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4364.1.S1_at	A	A1TS	POPTR_0003s19250	POPTR_0003s19250 (10)	scaffold_3:18038597-18039051(-) (10)	NA	P52839	Flavonol sulfotransferase-like	AT5G07010.1	sulfotransferase 2A 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
Ptp.4364.1.S1_s_at	A	A2TS	POPTR_0003s19260	POPTR_0003s19260 (11)//POPTR_0003s19250 (9)	scaffold_3:18038568-18042919(-) (11)//scaffold_3:18042452-18042841(-) (9)	NA	P52839	Flavonol sulfotransferase-like	AT5G07010.1	sulfotransferase 2A 	LOC_Os04g44460.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
Ptp.4365.1.S1_at	A	A1TS	POPTR_0011s02520	POPTR_0011s02520 (11)	scaffold_11:2419565-2424756(-) (11)	NA	O74545	Putative hydrolase C777.06c	AT1G30300.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os12g42100.1	"phosphonate metabolism protein-related, putative"	Medtr2g022220.1	"phosphonate metabolism protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4366.1.S1_at	A	A1TS	POPTR_0001s05970	POPTR_0001s05970 (9)	scaffold_1:4684410-4684522(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4367.1.S1_s_at	A	A1TS	POPTR_0011s05250	POPTR_0011s05250 (11)	scaffold_11:5138513-5138900(+) (11)	NA	Q05758	"Ketol-acid reductoisomerase, chloroplastic"	AT3G58610.3	ketol-acid reductoisomerase 	LOC_Os05g49800.1	"ketol-acid reductoisomerase, chloroplast precursor, putative, expressed"	Medtr4g109610.1	Acetohydroxy acid isomeroreductase; ; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009082|branched chain family amino acid biosynthetic process	GO:0004455|ketol-acid reductoisomerase activity	NA
Ptp.4369.1.S1_s_at	A	A1TS	POPTR_0008s04170	POPTR_0008s04170 (11)	scaffold_8:2336432-2336549(-) (11)	NA	NA	NA	AT4G25030.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g43060.1	expressed protein	Medtr1g121550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4370.1.S1_s_at	A	A1TS	POPTR_0010s19420	POPTR_0010s19420 (11)	scaffold_10:17328111-17328166(-) (11)	NA	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
Ptp.4371.1.A1_at	A	A1TS	POPTR_0008s05970	POPTR_0008s05970 (10)	scaffold_8:3518286-3518461(-) (11)	NA	Q9C912	60S ribosomal protein L35a-3	AT1G74270.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4371.2.A1_s_at	A	A1TS	POPTR_0008s05970	POPTR_0008s05970 (11)	scaffold_8:3518494-3519788(-) (11)	NA	Q9C912	60S ribosomal protein L35a-3	AT1G74270.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4373.1.S1_at	A	A1TS	POPTR_0005s26740	POPTR_0005s26740 (11)	scaffold_5:24629374-24629705(-) (11)	NA	P00299	"Plastocyanin A, chloroplastic"	AT1G76100.1	plastocyanin 1 	LOC_Os06g01210.1	"plastocyanin, chloroplast precursor, putative, expressed"	Medtr3g157410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.4373.1.S1_x_at	A	A1TS	POPTR_0005s26740	POPTR_0005s26740 (11)	scaffold_5:24629369-24629705(-) (11)	NA	P00299	"Plastocyanin A, chloroplastic"	AT1G76100.1	plastocyanin 1 	LOC_Os06g01210.1	"plastocyanin, chloroplast precursor, putative, expressed"	Medtr3g157410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.4375.1.S1_s_at	A	A1TS	POPTR_0003s10400	POPTR_0003s10400 (11)	scaffold_3:11396718-11397641(+) (11)	POPTR_0001s01130 (6)	P41091	Eukaryotic translation initiation factor 2 subunit 3	AT1G04170.1	eukaryotic translation initiation factor 2 gamma subunit 	LOC_Os12g41400.1	"eukaryotic translation initiation factor 2 subunit gamma, putative, expressed"	Medtr2g091680.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.4376.1.S1_at	A	A1TS	POPTR_0016s02850	POPTR_0016s02850 (10)	scaffold_16:1408440-1408979(-) (10)	NA	Q84LH3	Werner Syndrome-like exonuclease	AT4G13870.1	Werner syndrome-like exonuclease 	LOC_Os01g53580.1	"3-5 exonuclease domain-containing protein, putative"	Medtr2g085350.1	"Polynucleotidyl transferase, Ribonuclease H fold "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.4378.1.S1_s_at	A	A1TS	POPTR_0006s03090	POPTR_0006s03090 (11)	scaffold_6:1965764-1966298(+) (11)	NA	NA	NA	AT3G56880.1	VQ motif-containing protein 	LOC_Os01g17050.1	"VQ domain containing protein, putative, expressed"	Medtr7g105490.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4379.1.S1_s_at	A	A1TS	POPTR_0004s22600	POPTR_0004s22600 (11)	scaffold_4:21469761-21469939(-) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.438.1.S1_at	A	A1TS	POPTR_0001s35610	POPTR_0001s35610 (11)	scaffold_1:33954857-33955748(+) (11)	NA	NA	NA	AT3G27460.1	SGF29 tudor-like domain 	LOC_Os12g19350.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4380.1.S1_s_at	A	A1TS	POPTR_0003s04310	POPTR_0003s04310 (11)	scaffold_3:5023641-5023687(-) (11)	NA	NA	NA	AT3G13882.1	Ribosomal protein L34 	LOC_Os01g39010.1	"50S ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4381.1.S1_s_at	A	A1TS	POPTR_0003s06510	POPTR_0003s06510 (11)	scaffold_3:7993695-7993879(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4381.2.A1_a_at	A	A1TS	POPTR_0003s06510	POPTR_0003s06510 (11)	scaffold_3:7975257-7975342(-) (11)//scaffold_3:7994257-7994342(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4382.1.S1_s_at	A	A1TS	POPTR_0010s23380	POPTR_0010s23380 (11)	scaffold_10:19983473-19984058(-) (11)	NA	Q93YU5	Probable exocyst complex component 4	AT3G10380.1	subunit of exocyst complex 8 	LOC_Os08g22864.1	"sec8 exocyst complex component specific domain containing protein, expressed"	Medtr5g017660.1	hypothetical protein 	GO:0006904|vesicle docking during exocytosis||GO:0015031|protein transport	NA	GO:0000145|exocyst
Ptp.4385.1.S1_a_at	A	A1TS	POPTR_0010s02690	POPTR_0010s02690 (11)	scaffold_10:3141139-3142982(+) (11)	NA	NA	NA	AT5G18800.2	Cox19-like CHCH family protein 	LOC_Os03g18420.1	"CHCH domain containing protein, expressed"	AC233070_20.1	CHCH AC233070.4 91111-95201 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4385.1.S1_at	A	A1TS	POPTR_0010s02690	POPTR_0010s02690 (11)	scaffold_10:3143027-3143100(+) (11)	NA	NA	NA	AT5G18800.2	Cox19-like CHCH family protein 	LOC_Os03g18420.1	"CHCH domain containing protein, expressed"	AC233070_20.1	CHCH AC233070.4 91111-95201 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4387.1.S1_at	A	A1TS	POPTR_0009s13940	POPTR_0009s13940 (11)	scaffold_9:11006489-11007315(-) (11)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4389.1.A1_s_at	A	A1TS	POPTR_0018s00660	POPTR_0018s00660 (11)	scaffold_18:578912-579322(+) (11)	NA	NA	NA	AT4G32750.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g17250.1	expressed protein	AC225507_2.1	hypothetical protein AC225507.11 13063-9895 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4391.2.A1_s_at	A	A1TS	POPTR_0001s02900	POPTR_0001s02900 (11)	scaffold_1:2288151-2289229(-) (11)	NA	NA	NA	AT1G32400.3	tobamovirus multiplication 2A 	LOC_Os08g18044.2	"tetraspanin family protein, putative, expressed"	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.4391.3.S1_at	A	A1MS	POPTR_0001s02900	POPTR_0001s02900 (11)	scaffold_1:2292966-2293006(-) (11)	NA	NA	NA	AT1G32400.3	tobamovirus multiplication 2A 	LOC_Os08g18044.2	"tetraspanin family protein, putative, expressed"	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.4392.1.S1_at	A	A1TS	POPTR_0004s21790	POPTR_0004s21790 (10)	scaffold_4:20795294-20795853(-) (10)	NA	Q99JW2	Aminoacylase-1	AT4G38220.2	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046740.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.4393.1.S1_s_at	A	A1TS	POPTR_0013s04470	POPTR_0013s04470 (11)	scaffold_13:3071016-3071250(+) (11)	NA	Q86YJ7	Ankyrin repeat domain-containing protein 13B	AT3G04470.1	Ankyrin repeat family protein 	LOC_Os02g56530.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4394.1.S1_at	A	A1TS	POPTR_0021s00770	POPTR_0021s00770 (9)	scaffold_21:439241-439506(-) (9)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT1G50660.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). 	LOC_Os05g41910.1	expressed protein	Medtr5g099930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4395.1.S1_s_at	A	A1TS	POPTR_0008s19790	POPTR_0008s19790 (11)	scaffold_8:13649357-13650648(+) (11)	NA	Q8VXV4	Chaperone protein dnaJ 16	AT1G24120.1	ARG1-like 1 	LOC_Os02g50760.2	"heat shock protein DnaJ, putative, expressed"	Medtr5g036860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.4396.1.S1_at	A	A1TS	POPTR_0005s26890	POPTR_0005s26890 (11)	scaffold_5:24735822-24735913(-) (11)	NA	P51659	Peroxisomal multifunctional enzyme type 2	AT1G76150.1	enoyl-CoA hydratase 2 	LOC_Os09g37280.2	"peroxisomal multifunctional enzyme type 2, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4396.1.S1_s_at	A	A1TS	POPTR_0005s26890	POPTR_0005s26890 (11)	scaffold_5:24734627-24735832(-) (11)	NA	P51659	Peroxisomal multifunctional enzyme type 2	AT1G76150.1	enoyl-CoA hydratase 2 	LOC_Os09g37280.2	"peroxisomal multifunctional enzyme type 2, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4397.1.S1_at	A	A1TS	POPTR_0004s14900	POPTR_0004s14900 (11)	scaffold_4:15562049-15562322(-) (11)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
Ptp.4400.1.S1_at	A	A1TS	POPTR_0014s12410	POPTR_0014s12410 (11)	scaffold_14:9161434-9164682(+) (11)	NA	NA	NA	AT2G47690.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os08g44250.1	"fiber protein Fb14, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4400.1.S1_s_at	A	A1TS	POPTR_0014s12410	POPTR_0014s12410 (11)	scaffold_14:9161446-9164509(+) (11)	NA	NA	NA	AT2G47690.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os08g44250.1	"fiber protein Fb14, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4402.2.S1_at	A	A1TS	POPTR_0008s07980	POPTR_0008s07980 (11)	scaffold_8:4926423-4928520(-) (11)	NA	Q941Q3	Zinc finger CCCH domain-containing protein 37	AT3G12680.1	floral homeotic protein (HUA1) 	LOC_Os01g42970.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g089530.1	"Zinc finger, CCCH-type; Sugar transporter superfamily "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.4403.1.S1_at	A	A1TS	POPTR_0010s18810	POPTR_0010s18810 (11)	scaffold_10:16935164-16935684(-) (11)	NA	Q921G8	Gamma-tubulin complex component 2	AT5G17410.2	Spc97 / Spc98 family of spindle pole body (SBP) component 	LOC_Os04g42330.1	"Spc97 / Spc98 family protein, putative, expressed"	Medtr8g011890.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
Ptp.4404.1.S1_at	A	A1TS	POPTR_0018s13190	POPTR_0018s13190 (11)	scaffold_18:13607826-13608472(-) (11)	NA	Q9C9W0	ABC transporter I family member 17	AT1G67940.1	non-intrinsic ABC protein 3 	LOC_Os06g48060.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g154730.1	ABC transporter related 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.4406.2.S1_a_at	A	A1TS	POPTR_0010s23280	POPTR_0010s23280 (11)	scaffold_10:19881231-19882069(-) (11)	POPTR_0008s03620 (6)	P47082	Vacuolar amino acid transporter 1	AT2G39130.1	Transmembrane amino acid transporter family protein 	LOC_Os02g01100.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr1g120430.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4409.1.S1_at	A	A1TS	POPTR_0006s24980	POPTR_0006s24980 (11)	scaffold_6:23455082-23457657(-) (11)	NA	Q3B8G0	UPF0587 protein C1orf123 homolog	AT4G32930.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF866, eukaryotic (InterPro:IPR008584); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g38480.1	"GA18326-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.441.1.A1_at	A	A1TS	POPTR_0012s14980	POPTR_0012s14980 (11)	scaffold_12:14659950-14660276(-) (11)	POPTR_0012s12320 (6)	O23708	Proteasome subunit alpha type-2-A	AT1G16470.2	proteasome subunit PAB1 	LOC_Os02g42320.2	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4410.1.S1_at	A	A1TS	POPTR_0001s11200	POPTR_0001s11200 (10)	scaffold_1:8691066-8691404(+) (10)	NA	Q6GQ69	FAS-associated factor 2-B	AT4G10790.1	UBX domain-containing protein 	LOC_Os10g37630.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4411.2.S1_at	A	A1TA	POPTR_0018s11410	POPTR_0018s11410 (9)	scaffold_18:12162320-12162364(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g145140.1	Protein of unknown function UPF0057 	NA	NA	GO:0016021|integral to membrane
Ptp.4412.2.S1_s_at	A	A1TS	POPTR_0006s25160	POPTR_0006s25160 (11)	scaffold_6:23590289-23590524(+) (11)	NA	Q9M077	Serine/threonine-protein kinase Aurora-1	AT4G32830.1	ataurora1 	LOC_Os01g09580.2	"CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g128170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4413.2.S1_s_at	A	A1TS	POPTR_0001s03040	POPTR_0001s03040 (11)	scaffold_1:2391885-2392593(-) (11)//scaffold_1973:2736-3311(-) (9)	POPTR_1973s00200 (8)	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.4414.1.S1_at	A	A1MS	POPTR_0004s03780	POPTR_0004s03780 (9)	scaffold_4:2637074-2637204(-) (9)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4414.2.S1_s_at	A	A1TS	POPTR_0004s03780	POPTR_0004s03780 (11)	scaffold_4:2637206-2638391(-) (11)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4415.1.S1_at	A	A1TS	POPTR_0011s13810	POPTR_0011s13810 (10)	scaffold_11:16451008-16451047(+) (10)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.1	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.4415.1.S1_x_at	A	A1TS	POPTR_0011s13810	POPTR_0011s13810 (10)	scaffold_11:16450315-16451078(+) (10)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.1	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.4419.1.S1_at	A	A1TS	POPTR_0002s11330	POPTR_0002s11330 (11)	scaffold_2:8381036-8382304(+) (11)	NA	O80594	Ergosterol biosynthetic protein 28	AT1G10030.1	homolog of yeast ergosterol28 	LOC_Os12g43670.1	"ergosterol biosynthetic protein 28, putative, expressed"	Medtr3g128010.1	Protein of unknown function UPF0143 	NA	NA	GO:0016021|integral to membrane
Ptp.442.1.S1_at	A	A1TS	POPTR_0018s03890	POPTR_0018s03890 (9)	scaffold_18:3323749-3325323(+) (9)	NA	P57722	Poly(rC)-binding protein 3	AT4G26000.1	RNA-binding KH domain-containing protein 	LOC_Os10g41440.1	"KH domain containing protein, putative, expressed"	Medtr8g129730.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.4420.1.S1_s_at	A	A1TS	POPTR_0013s09550	POPTR_0013s09550 (11)	scaffold_13:9310442-9312363(+) (11)	NA	NA	NA	AT4G10300.1	RmlC-like cupins superfamily protein 	LOC_Os04g36760.1	"enzyme of the cupin superfamily protein, putative, expressed"	Medtr7g034850.1	"Cupin, RmlC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4421.1.A1_s_at	A	A7TS	POPTR_0001s39630	POPTR_0001s39650 (11)//POPTR_0001s39630 (11)//POPTR_0001s39680 (11)//POPTR_0001s39660 (11)//POPTR_0001s39920 (11)//POPTR_0001s39670 (10)//POPTR_0001s39940 (10)	scaffold_1:38850220-38850526(+) (11)//scaffold_1:38884382-38884688(+) (11)//scaffold_1:38925017-38933813(+) (11)//scaffold_1:38933507-38940406(+) (10)//scaffold_1:38976897-38977203(+) (11)//scaffold_1:39174688-39174994(+) (11)//scaffold_1:39215495-39215786(+) (10)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4425.1.S1_s_at	A	A2MS	POPTR_0016s01220	POPTR_0016s01220 (11)//POPTR_0016s01230 (11)	scaffold_16:517350-517421(-) (11)//scaffold_16:525319-525390(+) (11)	NA	P54928	Inositol monophosphatase 3	AT3G02870.1	Inositol monophosphatase family protein 	LOC_Os03g39000.2	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
Ptp.4430.1.S1_a_at	A	A1TS	POPTR_0008s12110	POPTR_0008s12110 (11)	scaffold_8:7810770-7811442(-) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.4432.1.A1_s_at	A	A1TS	POPTR_0004s08050	POPTR_0004s08050 (11)	scaffold_4:6580047-6580757(+) (11)	NA	Q6INR1	Eukaryotic translation initiation factor 3 subunit J	AT1G66070.2	Translation initiation factor eIF3 subunit 	LOC_Os02g02990.1	"translation initiation factor eIF3 subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4433.1.S1_at	A	A1TS	POPTR_0018s06470	POPTR_0018s06470 (11)	scaffold_18:6379717-6381684(-) (11)	NA	Q9SR77	"Heme-binding-like protein At3g10130, chloroplastic"	AT5G20140.2	SOUL heme-binding family protein 	LOC_Os06g39690.1	"SOUL heme-binding protein, putative, expressed"	Medtr2g058890.1	SOUL heme-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4435.1.S1_s_at	A	A1TS	POPTR_0013s06430	POPTR_0013s06430 (11)	scaffold_13:5005979-5007152(-) (11)	NA	Q8DJB3	Protein grpE	AT5G17710.2	Co-chaperone GrpE family protein 	LOC_Os02g39870.1	"co-chaperone GrpE protein, putative, expressed"	Medtr7g104090.1	"GrpE protein, head "	GO:0006457|protein folding||GO:0030150|protein import into mitochondrial matrix||GO:0044260|cellular macromolecule metabolic process	GO:0000774|adenyl-nucleotide exchange factor activity||GO:0051087|chaperone binding||GO:0042803|protein homodimerization activity	GO:0005739|mitochondrion
Ptp.4437.1.S1_s_at	A	A1TS	POPTR_0005s26340	POPTR_0005s26340 (11)	scaffold_5:24410575-24411713(+) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4438.1.S1_s_at	A	A1TS	POPTR_0019s10050	POPTR_0019s10050 (11)	scaffold_19:11676328-11678685(+) (11)	NA	NA	NA	AT2G21195.1	unknown protein; Has 28 Blast hits to 28 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g16150.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4439.1.S1_at	A	A1TS	POPTR_0013s06780	POPTR_0013s06780 (11)	scaffold_13:5487055-5487192(+) (11)	NA	Q08747	Upstream activation factor subunit UAF30	AT2G35605.1	SWIB/MDM2 domain superfamily protein 	LOC_Os02g03730.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4439.1.S1_s_at	A	A1TS	POPTR_0013s06780	POPTR_0013s06780 (11)	scaffold_13:5485852-5487069(+) (11)	NA	Q08747	Upstream activation factor subunit UAF30	AT2G35605.1	SWIB/MDM2 domain superfamily protein 	LOC_Os02g03730.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4441.1.S1_at	A	A1TS	POPTR_0014s05130	POPTR_0014s05130 (9)	scaffold_14:3905835-3907021(-) (9)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4441.1.S1_x_at	A	A1TS	POPTR_0014s05130	POPTR_0014s05130 (9)	scaffold_14:3905674-3907021(-) (9)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4442.1.S1_at	A	A1TS	POPTR_0014s14310	POPTR_0014s14310 (11)	scaffold_14:10466495-10466962(-) (11)	NA	P35694	Brassinosteroid-regulated protein BRU1	AT3G23730.1	xyloglucan endotransglucosylase/hydrolase 16 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr3g104510.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.4443.1.S1_s_at	A	A1TS	POPTR_0019s14190	POPTR_0019s14190 (11)	scaffold_19:14941888-14942033(+) (11)	NA	NA	NA	AT1G11360.4	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os07g36600.2	"universal stress protein domain containing protein, putative, expressed"	Medtr2g103170.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.4444.1.S1_at	A	A1TS	POPTR_0008s12000	POPTR_0008s12000 (11)	scaffold_8:7738415-7739825(-) (11)	NA	P31165	"50S ribosomal protein L15, chloroplastic (Fragment)"	AT3G25920.1	ribosomal protein L15 	LOC_Os03g12020.1	"50S ribosomal protein L15, chloroplast precursor, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4445.1.S1_s_at	A	A1TS	POPTR_0016s07880	POPTR_0016s07880 (11)	scaffold_16:5706969-5707173(+) (11)//scaffold_354:31660-31864(+) (11)	NA	O82221	Probable small nuclear ribonucleoprotein G	AT3G11500.1	Small nuclear ribonucleoprotein family protein 	LOC_Os03g29740.1	"LSM domain containing protein, expressed"	Medtr7g127710.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4446.1.A1_s_at	A	A1TS	POPTR_0006s26940	POPTR_0006s26940 (11)	scaffold_6:24982891-24983499(-) (11)	NA	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.4446.2.A1_s_at	A	A2TS	POPTR_0006s26940	POPTR_0006s26940 (11)//POPTR_0018s01620 (9)	scaffold_6:24983610-24983830(-) (11)	NA	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.4448.1.S1_s_at	A	A2TS	POPTR_0004s06460	POPTR_0017s10730 (11)//POPTR_0004s06460 (11)	scaffold_17:10242808-10243471(+) (11)//scaffold_4:5229293-5229963(+) (11)	NA	O23710	Proteasome subunit beta type-7-A	AT3G27430.2	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os05g09490.2	"peptidase, T1 family, putative, expressed"	Medtr7g032520.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4449.1.S1_at	A	A1TS	POPTR_0004s18430	POPTR_0004s18430 (11)	scaffold_4:18331501-18332015(-) (11)	NA	NA	NA	AT4G38490.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g27690.5	expressed protein	NA	NA	GO:0006605|protein targeting	NA	GO:0016020|membrane
Ptp.4451.1.S1_x_at	A	A1TS	POPTR_0010s20700	POPTR_0010s20700 (11)	scaffold_10:18181773-18183617(+) (11)	NA	Q9LMK0	60S ribosomal protein L35a-1	AT1G07070.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4452.2.A1_s_at	A	A1TS	POPTR_0002s25510	POPTR_0002s25510 (11)	scaffold_2:22585680-22586631(+) (11)	NA	Q41228	"Photosystem I reaction center subunit IV A, chloroplastic"	AT2G20260.1	photosystem I subunit E-2 	LOC_Os07g25430.1	"photosystem I reaction center subunit IV A, chloroplast precursor, putative, expressed"	Medtr7g117870.1	Photosystem I reaction centre subunit IV/PsaE 	NA	NA	GO:0009538|photosystem I reaction center
Ptp.4453.1.S1_at	A	A1TS	POPTR_0016s12250	POPTR_0016s12250 (11)	scaffold_16:11601017-11602312(-) (11)	NA	Q6AZD4	Mitochondrial inner membrane protease subunit 2	AT3G08980.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os03g05430.1	"peptidase, putative, expressed"	Medtr5g007950.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4454.1.S1_s_at	A	A1TS	POPTR_0011s10920	POPTR_0011s10920 (11)	scaffold_11:13487132-13488304(+) (11)	NA	Q54XK2	Protein transport protein Sec61 subunit alpha	AT2G34250.2	SecY protein transport family protein 	LOC_Os03g11440.1	"protein transport protein Sec61 subunit alpha, putative, expressed"	Medtr8g092670.1	SecY protein; ABC transporter related 	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
Ptp.4455.1.S1_s_at	A	A1TS	POPTR_0008s06580	POPTR_0008s06580 (11)	scaffold_8:3918423-3918809(-) (11)	NA	Q7XSQ9	Probable aquaporin PIP1-2	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr3g093260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4456.1.S1_at	A	A1TS	POPTR_0013s14670	POPTR_0013s14670 (11)	scaffold_13:14815368-14816779(+) (11)	NA	Q9ZR07	"Frataxin, mitochondrial"	AT4G03240.1	frataxin homolog 	LOC_Os01g57460.1	"frataxin, putative, expressed"	Medtr6g081070.1	Frataxin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4457.1.S1_at	A	A1TS	POPTR_0006s28330	POPTR_0006s28330 (9)	scaffold_6:26043656-26043730(+) (9)	NA	Q9C5Z1	Eukaryotic translation initiation factor 3 subunit B	AT5G27640.1	translation initiation factor 3B1 	LOC_Os10g41960.1	"eukaryotic translation initiation factor 3 subunit B, putative, expressed"	Medtr3g138980.1	RNA-binding region RNP-1 (RNA recognition motif); 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4458.1.S1_s_at	A	A1TS	POPTR_0002s20900	POPTR_0002s20900 (11)	scaffold_2:17124867-17125345(-) (11)	NA	O65857	Probable glutathione S-transferase GSTF1	AT3G62760.1	Glutathione S-transferase family protein 	LOC_Os01g27260.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4459.1.S1_x_at	A	A1TS	POPTR_0015s00950	POPTR_0015s00950 (11)	scaffold_15:553983-555838(-) (11)	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.446.1.S1_at	A	A1TS	POPTR_0012s13820	POPTR_0012s13820 (9)	scaffold_12:13810839-13811067(+) (9)	NA	Q38872	Calcium-dependent protein kinase 6	AT1G12580.1	phosphoenolpyruvate carboxylase-related kinase 1 	LOC_Os06g03682.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g129530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4460.1.S1_at	A	A1TS	POPTR_0010s10470	POPTR_0010s10470 (11)	scaffold_10:10966438-10967183(-) (11)	NA	Q9ZTR1	Spermidine synthase 1	AT1G70310.1	spermidine synthase 2 	LOC_Os07g22600.1	"spermidine synthase, putative, expressed"	Medtr5g035800.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.4461.1.S1_at	A	A1TS	POPTR_0013s13110	POPTR_0013s13110 (10)	scaffold_13:13695551-13697115(-) (10)	NA	NA	NA	AT2G31725.1	Eukaryotic protein of unknown function (DUF842) 	LOC_Os11g14990.1	expressed protein	Medtr3g010480.1	"Protein of unknown function DUF842, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4463.1.S1_s_at	A	A1TS	POPTR_0001s27900	POPTR_0001s27900 (11)	scaffold_1:26749556-26750109(-) (11)	NA	O22827	Molybdopterin synthase catalytic subunit	AT2G43760.3	molybdopterin biosynthesis MoaE family protein 	LOC_Os02g04740.1	"molybdenum cofactor synthesis protein 2 large subunit, putative, expressed"	Medtr3g058670.1	Molybdopterin biosynthesis MoaE 	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.4465.1.S1_a_at	A	A1TS	POPTR_0010s25640	POPTR_0010s25640 (11)	scaffold_10:21226005-21226050(-) (11)	NA	Q06450	"ATP synthase subunit epsilon, mitochondrial"	AT1G51650.1	"ATP synthase epsilon chain, mitochondrial "	LOC_Os08g15170.1	"ATP synthase epsilon chain, mitochondrial, putative, expressed"	Medtr5g043990.1	Mitochondrial ATP synthase epsilon chain 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0000275|""mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)"""
Ptp.4466.1.S1_at	A	A1TS	POPTR_0006s01600	POPTR_0006s01600 (11)	scaffold_6:968843-970116(+) (11)	NA	P54928	Inositol monophosphatase 3	AT3G02870.1	Inositol monophosphatase family protein 	LOC_Os03g39000.2	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
Ptp.4467.1.S1_at	A	A1TS	POPTR_0007s01410	POPTR_0007s01410 (10)	scaffold_7:798629-799279(-) (11)	NA	Q54Q31	Prohibitin-2	AT2G20530.2	prohibitin 6 	LOC_Os03g62490.1	"prohibitin-2, putative, expressed"	Medtr4g107930.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4468.1.S1_at	A	A1TS	POPTR_0007s14020	POPTR_0007s14020 (9)	scaffold_7:13959950-13960180(-) (9)	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.4470.1.S1_at	A	A1TS	POPTR_0016s00450	POPTR_0016s00450 (10)	scaffold_16:131805-132263(+) (10)	NA	Q9FIK0	6-phosphofructokinase 2	AT5G47810.1	phosphofructokinase 2 	LOC_Os09g30240.1	"phosphofructokinase, putative, expressed"	AC233669_7.1	Phosphofructokinase AC233669.2 25649-23969 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4471.1.S1_at	A	A1TS	POPTR_0007s12110	POPTR_0007s12110 (10)	scaffold_7:12430126-12430632(+) (10)	NA	Q41495	STS14 protein	AT5G66590.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr5g018750.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4472.1.S1_s_at	A	A1TS	POPTR_0009s08720	POPTR_0009s08720 (11)	scaffold_9:7884490-7885884(+) (11)	NA	NA	NA	AT4G33740.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37820.1); Has 138092 Blast hits to 73110 proteins in 2951 species: Archae - 732; Bacteria - 17903; Metazoa - 48520; Fungi - 16808; Plants - 7078; Viruses - 1044; Other Eukaryotes - 46007 (source: NCBI BLink). 	LOC_Os06g36050.1	expressed protein	AC235005_3.1	hypothetical protein AC235005.1 9201-11167 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4473.1.S1_at	A	A1TS	POPTR_0017s06470	POPTR_0017s06470 (11)	scaffold_17:4958267-4959112(-) (11)	NA	O22059	Transcription factor CPC	AT2G46410.1	Homeodomain-like superfamily protein 	LOC_Os01g43180.1	"MYB family transcription factor, putative"	Medtr2g103740.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4475.1.S1_s_at	A	A1TS	POPTR_0006s12320	POPTR_0006s12320 (11)	scaffold_6:9487863-9488830(+) (11)	NA	P36862	GTP-binding protein yptV3	AT5G03530.1	RAB GTPase homolog C2A 	LOC_Os03g05280.1	"ras-related protein, putative, expressed"	Medtr3g143270.1	"Ras GTPase; Sigma-54 factor, interaction region; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4476.1.S1_a_at	A	A2TS	POPTR_0012s11500	POPTR_0015s12250 (11)//POPTR_0012s11500 (11)	scaffold_12:11909237-11909993(+) (11)//scaffold_15:12594055-12594851(+) (11)	NA	Q38946	Glutamate dehydrogenase 2	AT5G07440.2	glutamate dehydrogenase 2 	LOC_Os04g45970.1	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4476.3.S1_a_at	A	A1TS	POPTR_0012s11500	POPTR_0012s11500 (11)	scaffold_12:11910116-11910235(+) (11)	NA	Q38946	Glutamate dehydrogenase 2	AT5G07440.2	glutamate dehydrogenase 2 	LOC_Os04g45970.1	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4477.1.S1_at	A	A1TS	POPTR_0001s05690	POPTR_0001s05690 (11)	scaffold_1:4381872-4382393(+) (11)	POPTR_0003s20360 (6)	P25083	"ADP,ATP carrier protein, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4478.1.S1_s_at	A	A1TS	POPTR_0017s05700	POPTR_0017s05700 (11)	scaffold_17:4468635-4468723(+) (11)	NA	Q96288	Salt tolerance protein	AT1G06040.1	B-box zinc finger family protein 	LOC_Os04g41560.2	"B-box zinc finger family protein, putative, expressed"	Medtr2g118390.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.4479.1.S1_at	A	A1TS	POPTR_0030s00210	POPTR_0030s00210 (10)	scaffold_30:21203-21932(-) (10)	NA	Q5F3K4	WD repeat-containing protein 48	AT3G05090.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g06810.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g140230.1	WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4481.1.S1_a_at	A	A1TS	POPTR_0006s01850	POPTR_0006s01850 (11)	scaffold_6:1120650-1120827(+) (11)	NA	NA	NA	AT4G16410.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF751 (InterPro:IPR008470); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g41630.1	hypothetical protein	Medtr8g148490.1	Protein of unknown function DUF751 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4485.1.S1_at	A	A1TS	POPTR_0014s06330	POPTR_0014s06330 (10)	scaffold_14:4814872-4816037(+) (10)	NA	Q32LQ3	Probable O-sialoglycoprotein endopeptidase 2	AT2G45270.1	glycoprotease 1 	LOC_Os12g29990.1	"O-sialoglycoprotein endopeptidase, putative, expressed"	Medtr4g025830.1	"Peptidase M22, glycoprotease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.4486.1.S1_s_at	A	A1TS	POPTR_0006s23890	POPTR_0006s23890 (10)	scaffold_6:22607915-22607949(-) (10)	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
Ptp.4487.1.S1_at	A	A1TS	POPTR_0004s22500	POPTR_0004s22500 (11)	scaffold_4:21383059-21384385(+) (11)	NA	Q76LT9	Protein NEF1	AT4G29735.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g37070.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4488.1.S1_at	A	A1TS	POPTR_0001s01950	POPTR_0001s01950 (11)	scaffold_1:1426650-1427592(-) (11)	NA	Q9ZWQ7	Defender against cell death 1	AT2G35520.1	Defender against death (DAD family) protein 	LOC_Os04g32550.1	"defender against cell death 1, putative, expressed"	Medtr3g026150.1	Defender against death DAD protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4489.1.S1_at	A	A1TS	POPTR_0006s04640	POPTR_0006s04640 (10)	scaffold_6:3187988-3188491(+) (10)	NA	NA	NA	AT5G04000.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl. "	LOC_Os05g41620.1	expressed protein	Medtr7g108130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4491.1.S1_at	A	A1TS	POPTR_0009s01280	POPTR_0009s01280 (11)	scaffold_9:1495122-1499511(-) (11)	NA	Q9ZS21	Lactoylglutathione lyase	AT1G08110.4	lactoylglutathione lyase family protein / glyoxalase I family protein 	LOC_Os05g22970.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4492.2.S1_a_at	A	A1TS	POPTR_0002s21620	POPTR_0002s21620 (11)	scaffold_2:18142986-18144623(+) (11)	NA	NA	NA	AT5G55140.1	ribosomal protein L30 family protein 	LOC_Os08g01859.1	"ribosomal protein L30 containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4492.2.S1_s_at	A	A2TS	POPTR_0002s21620	POPTR_0002s21620 (11)//POPTR_0014s15570 (11)	scaffold_14:11591905-11592015(+) (11)//scaffold_2:18144005-18144115(+) (11)	NA	NA	NA	AT5G55140.1	ribosomal protein L30 family protein 	LOC_Os08g01859.1	"ribosomal protein L30 containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4493.1.S1_a_at	A	A1TS	POPTR_0009s09930	POPTR_0009s09930 (11)	scaffold_9:8681349-8681794(+) (11)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os04g20810.3	"receptor protein kinase, putative, expressed"	Medtr4g032150.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4493.1.S1_s_at	A	A1TS	POPTR_0009s09930	POPTR_0009s09930 (11)	scaffold_9:8681586-8681750(+) (11)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os04g20810.3	"receptor protein kinase, putative, expressed"	Medtr4g032150.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4494.1.S1_a_at	A	A1TS	POPTR_0015s11460	POPTR_0015s11460 (11)	scaffold_15:12039442-12040282(-) (11)	NA	Q9FI61	Ubiquitin-conjugating enzyme E2 27	AT5G50870.1	ubiquitin-conjugating enzyme 27 	LOC_Os01g70140.1	"ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed"	Medtr3g151060.1	"Ubiquitin-associated; Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4495.1.S1_s_at	A	A1TS	POPTR_0015s07950	POPTR_0015s07950 (11)	scaffold_15:9222003-9222636(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os06g37660.1	"OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed"	Medtr8g074360.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4495.2.S1_a_at	A	A1TS	POPTR_0012s07510	POPTR_0012s07510 (11)	scaffold_12:8424756-8424940(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os06g37660.1	"OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed"	Medtr8g074360.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4495.2.S1_s_at	A	A2TS	POPTR_0012s07510	POPTR_0012s07510 (11)//POPTR_0015s07950 (11)	scaffold_12:8424387-8424873(+) (11)//scaffold_15:9221904-9222395(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os06g37660.1	"OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed"	Medtr8g074360.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4495.3.S1_at	A	A1TS	POPTR_0012s07510	POPTR_0012s07510 (10)	scaffold_12:8425085-8425243(+) (10)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os06g37660.1	"OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed"	Medtr8g074360.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4497.1.S1_at	A	A2TS	POPTR_0002s06960	POPTR_0002s06960 (11)//POPTR_0005s21360 (11)	scaffold_2:4708187-4708504(-) (10)//scaffold_5:20463370-20463690(+) (11)	NA	P46276	"Fructose-1,6-bisphosphatase, cytosolic"	AT1G43670.1	Inositol monophosphatase family protein 	LOC_Os01g64660.2	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
Ptp.4498.1.S1_at	A	A1TS	POPTR_0002s07720	POPTR_0002s07720 (11)	scaffold_2:5296585-5296780(+) (11)	NA	Q5M990	Tetratricopeptide repeat protein 33	AT1G77230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g34830.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4499.1.S1_at	A	A1TS	POPTR_0001s37590	POPTR_0001s37590 (11)	scaffold_1:36561023-36561677(+) (11)	NA	NA	NA	AT5G55640.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g39820.1	expressed protein	Medtr5g103290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.45.1.A1_s_at	A	A1TS	POPTR_0001s20480	POPTR_0001s20480 (11)	scaffold_1:18428000-18428393(-) (11)	NA	P41381	Eukaryotic initiation factor 4A-8	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os06g48750.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g120800.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.450.1.A1_at	A	A1TS	POPTR_0004s08230	POPTR_0004s08230 (11)	scaffold_4:6736841-6737220(-) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT1G66150.1	transmembrane kinase 1 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr5g085220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.450.1.A1_s_at	A	A2TS	POPTR_0004s08230	POPTR_0004s08230 (11)//POPTR_0017s02480 (11)	scaffold_17:1787054-1787292(-) (11)//scaffold_4:6736933-6737174(-) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT1G66150.1	transmembrane kinase 1 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr5g085220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4500.1.S1_at	A	A1MS	POPTR_0011s12120	POPTR_0011s12120 (11)	scaffold_11:14903487-14903888(+) (11)	NA	Q9SEU6	"Thioredoxin M4, chloroplastic"	AT3G15360.1	thioredoxin M-type 4 	LOC_Os04g44830.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.4501.1.A1_at	A	A1TS	POPTR_0001s00470	POPTR_0001s00470 (11)	scaffold_1:360550-361081(-) (11)	NA	Q8VYK7	Autophagy-related protein 8f	AT4G16520.2	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4502.1.S1_at	A	A1TS	POPTR_0001s23760	POPTR_0001s23760 (11)	scaffold_1:23136681-23138149(-) (11)	NA	O80433	"Citrate synthase, mitochondrial"	AT2G44350.2	Citrate synthase family protein 	LOC_Os02g10070.2	"citrate synthase, putative, expressed"	Medtr5g099240.1	Citrate synthase 	GO:0044262|cellular carbohydrate metabolic process	"GO:0046912|""transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer"""	NA
Ptp.4505.1.S1_s_at	A	A1TS	POPTR_0015s08820	POPTR_0015s08820 (10)	scaffold_15:10171100-10171468(+) (10)	NA	Q9L5W4	50S ribosomal protein L7/L12	AT3G06040.3	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 	LOC_Os02g10540.1	"ribosomal protein L7/L12 C-terminal domain containing protein, expressed"	Medtr8g092690.1	"Ribosomal protein L7/12, oligomerisation; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4506.1.S1_s_at	A	A2TS	POPTR_0015s05990	POPTR_0015s06000 (11)//POPTR_0015s05990 (11)	scaffold_15:6295049-6295273(-) (11)//scaffold_15:6301969-6302193(-) (11)	NA	P17541	Acidic endochitinase	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr1g125760.1	"Glycoside hydrolase, chitinase active site "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4508.1.S1_at	A	A1TS	POPTR_0001s00720	POPTR_0001s00720 (9)	scaffold_1:597907-598473(-) (9)	NA	Q0V8M0	Protein KRI1 homolog	AT3G24080.2	KRR1 family protein 	LOC_Os05g41100.1	"protein kri1, putative, expressed"	Medtr2g129820.1	Krr1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4509.1.S1_at	A	A1TS	POPTR_0010s10250	POPTR_0010s10250 (9)	scaffold_10:10806668-10807259(-) (9)	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4509.1.S1_s_at	A	A1TS	POPTR_0010s10250	POPTR_0010s10250 (11)	scaffold_10:10806278-10806630(-) (11)	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4510.1.S1_at	A	A1TS	POPTR_0010s17320	POPTR_0010s17320 (10)	scaffold_10:15963879-15964257(-) (10)	NA	O95847	Mitochondrial uncoupling protein 4	AT1G14140.1	Mitochondrial substrate carrier family protein 	LOC_Os04g37630.1	"mitochondrial carrier protein, putative, expressed"	Medtr1g112070.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4511.1.S1_at	A	A1TS	POPTR_0004s21330	POPTR_0004s21330 (11)	scaffold_4:20497851-20498750(-) (11)	NA	P73456	Cell division protein ftsZ	AT2G36250.2	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
Ptp.4512.1.S1_x_at	A	A1TS	POPTR_0008s04010	POPTR_0008s04010 (11)	scaffold_8:2208849-2209145(+) (11)	NA	Q9SP55	V-type proton ATPase subunit G	AT3G01390.2	vacuolar membrane ATPase 10 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
Ptp.4513.1.S1_s_at	A	A1TS	POPTR_0006s11140	POPTR_0006s11140 (11)	scaffold_6:8454748-8456014(+) (11)	NA	Q9XG77	Proteasome subunit alpha type-6	AT2G05840.1	20S proteasome subunit PAA2 	LOC_Os03g08280.2	"peptidase, T1 family, putative, expressed"	Medtr2g071490.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4514.1.S1_s_at	A	A1TS	POPTR_0006s14580	POPTR_0006s14580 (11)	scaffold_5:9647755-9648194(-) (11)//scaffold_6:11917813-11918279(+) (11)	NA	NA	NA	AT2G28230.1	TATA-binding related factor (TRF) of subunit 20 of Mediator complex 	LOC_Os09g27140.2	expressed protein	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.4515.1.S1_at	A	A1TS	POPTR_0006s00530	POPTR_0006s00530 (11)	scaffold_6:273291-273652(-) (11)	NA	P49351	Farnesyl pyrophosphate synthase 1	AT5G47770.1	farnesyl diphosphate synthase 1 	LOC_Os01g50760.1	"polyprenyl synthetase, putative, expressed"	Medtr2g032930.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
Ptp.4515.1.S1_s_at	A	A1TS	POPTR_0006s00530	POPTR_0006s00530 (11)	scaffold_6:272759-273302(-) (11)	NA	P49351	Farnesyl pyrophosphate synthase 1	AT5G47770.1	farnesyl diphosphate synthase 1 	LOC_Os01g50760.1	"polyprenyl synthetase, putative, expressed"	Medtr2g032930.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
Ptp.4516.1.S1_s_at	A	A1TS	POPTR_0009s12780	POPTR_0009s12780 (11)	scaffold_9:10370253-10371035(-) (11)	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G21270.2	ubiquitin fusion degradation 1 	LOC_Os04g48770.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.4517.1.S1_s_at	A	A1TS	POPTR_0006s23290	POPTR_0006s23290 (11)	scaffold_6:22051717-22052227(+) (11)	NA	O76094	Signal recognition particle 72 kDa protein	AT1G67680.1	SRP72 RNA-binding domain 	LOC_Os01g66560.1	"signal recognition particle 72 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
Ptp.4518.1.S1_s_at	A	A1TS	POPTR_0007s12520	POPTR_0007s12520 (11)	scaffold_7:12812026-12812066(-) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os03g10140.1	"ZOS3-04 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.4519.1.S1_s_at	A	A1TS	POPTR_0008s01330	POPTR_0008s01330 (11)	scaffold_8:657401-657839(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.1	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.4520.1.S1_s_at	A	A1TS	POPTR_0323s00210	POPTR_0323s00210 (11)	scaffold_323:6229-6623(-) (11)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT5G61030.1	glycine-rich RNA-binding protein 3 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g105170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4521.1.S1_at	A	A1TS	POPTR_0018s11430	POPTR_0018s11430 (9)	scaffold_18:12167909-12168064(-) (9)	NA	NA	NA	AT5G57910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16930.1	expressed protein	Medtr8g145180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4522.1.S1_at	A	A1TS	POPTR_0014s15660	POPTR_0014s15660 (11)	scaffold_14:11675022-11675072(+) (11)	NA	Q8VYE5	"Glucan endo-1,3-beta-glucosidase 12"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4523.1.S1_at	A	A1TS	POPTR_0013s01710	POPTR_0013s01710 (9)	scaffold_13:967722-967948(-) (9)	NA	NA	NA	AT3G05545.1	RING/U-box superfamily protein 	LOC_Os05g06270.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4526.1.A1_s_at	A	A2TS	POPTR_0008s02430	POPTR_0008s02430 (11)//POPTR_0010s24290 (11)	scaffold_10:20577890-20579128(-) (11)//scaffold_8:1181465-1182731(+) (9)	NA	NA	NA	AT1G66240.1	homolog of anti-oxidant 1 	LOC_Os08g10480.1	heavy metal-associated domain containing protein	Medtr1g117110.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.4527.1.S1_s_at	A	A1TS	POPTR_0009s06660	POPTR_0009s06660 (11)	scaffold_9:6399979-6400406(+) (11)	NA	NA	NA	AT3G52105.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr8g037160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4528.1.S1_at	A	A1TS	POPTR_0003s21860	POPTR_0003s21860 (9)	scaffold_3:19851577-19853330(+) (9)	NA	NA	NA	AT5G19630.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g48590.1	expressed protein	Medtr4g141640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.453.1.A1_s_at	A	A1TS	POPTR_0006s22920	POPTR_0006s22920 (11)	scaffold_6:21783406-21783784(-) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G03870.1	Glutaredoxin family protein 	LOC_Os04g33680.1	"glutaredoxin, putative, expressed"	Medtr7g127470.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.4530.1.A1_at	A	A1TS	POPTR_0005s26700	POPTR_0005s26700 (11)	scaffold_5:24602411-24602452(-) (11)	POPTR_0002s01790 (6)	Q9SGS4	"Thioredoxin-like protein CDSP32, chloroplastic"	AT1G76080.1	chloroplastic drought-induced stress protein of 32 kD 	LOC_Os07g29410.1	"thioredoxin, putative, expressed"	Medtr1g032070.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.4531.1.S1_at	A	A1MS	POPTR_0013s02880	POPTR_0013s02880 (9)	scaffold_13:1740632-1742168(-) (10)	NA	Q94CI6	Sugar transporter ERD6-like 18	AT5G27360.1	Major facilitator superfamily protein 	LOC_Os03g24870.1	"transporter family protein, putative, expressed"	Medtr7g139770.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.4531.2.S1_s_at	A	A1TS	POPTR_0013s02880	POPTR_0013s02880 (11)	scaffold_13:1740786-1740832(-) (11)	NA	Q94CI6	Sugar transporter ERD6-like 18	AT5G27360.1	Major facilitator superfamily protein 	LOC_Os03g24870.1	"transporter family protein, putative, expressed"	Medtr7g139770.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.4532.1.S1_at	A	A1TS	POPTR_0002s08980	POPTR_0002s08980 (11)	scaffold_2:6350358-6350470(-) (11)	NA	Q9CXL1	Transmembrane protein 50A	AT1G36980.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0220 (InterPro:IPR007919); Has 424 Blast hits to 424 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 228; Fungi - 120; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os02g35880.1	"salt tolerant protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4533.1.S1_s_at	A	A1TS	POPTR_0011s02610	POPTR_0011s02610 (11)	scaffold_11:2516406-2516508(-) (11)	NA	P51373	Uncharacterized protein ycf23	NA	NA	LOC_Os05g49060.1	"uncharacterized protein ycf23, putative, expressed"	Medtr4g165580.1	Ribulose-phosphate binding barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4534.1.S1_at	A	A1TS	POPTR_0001s01490	POPTR_0001s01490 (11)	scaffold_1:1110420-1112168(+) (11)	NA	Q8GYX0	Mps one binder kinase activator-like 1	AT4G19045.1	Mob1/phocein family protein 	LOC_Os03g38020.1	"mps one binder kinase activator-like 1A, putative, expressed"	Medtr5g027360.1	Mob1/phocein 	NA	GO:0005515|protein binding	NA
Ptp.4536.1.S1_at	A	A1TS	POPTR_0002s09430	POPTR_0002s09430 (11)	scaffold_2:6723614-6724088(+) (11)	NA	C7G3A0	Metallophosphoesterase 1	NA	NA	LOC_Os06g11910.1	expressed protein	Medtr8g024590.1	hypothetical protein 	NA	GO:0016787|hydrolase activity	NA
Ptp.4537.1.S1_s_at	A	A1TS	POPTR_0006s28160	POPTR_0006s28160 (11)	scaffold_6:25954646-25955121(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4539.1.S1_at	A	A1TS	POPTR_0009s12900	POPTR_0009s12900 (11)	scaffold_9:10445914-10447452(-) (11)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.1	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr4g097630.1	YEATS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
Ptp.4539.2.S1_a_at	A	A1TS	POPTR_0009s12900	POPTR_0009s12900 (11)	scaffold_9:10448323-10449285(-) (11)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.1	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr4g097630.1	YEATS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
Ptp.4539.2.S1_at	A	A1MS	POPTR_0009s12900	POPTR_0009s12900 (11)	scaffold_9:10448004-10448123(-) (11)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.1	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr4g097630.1	YEATS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
Ptp.454.1.S1_at	A	A1TS	POPTR_0011s12040	POPTR_0011s12040 (10)	scaffold_11:14827450-14828850(+) (10)	NA	NA	NA	AT4G27500.1	proton pump interactor 1 	LOC_Os08g30060.2	"proton pump interactor, putative, expressed"	Medtr2g100530.1	"proton pump interactor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4540.2.S1_s_at	A	A1TS	POPTR_0016s00350	POPTR_0016s00350 (11)	scaffold_16:72147-72495(-) (11)	NA	P83326	Pectinesterase inhibitor	AT5G64620.1	cell wall / vacuolar inhibitor of fructosidase 2 	NA	NA	NA	NA	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.4543.1.A1_s_at	A	A2TS	POPTR_0004s01190	POPTR_0004s01190 (11)//POPTR_0004s01220 (10)	scaffold_4:646189-646505(-) (11)//scaffold_4:667632-667948(-) (11)	NA	P92980	"5'-adenylylsulfate reductase 3, chloroplastic"	AT4G21990.1	APS reductase 3 	LOC_Os07g32570.2	"OsAPRL1  adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed"	Medtr3g017000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4548.1.S1_s_at	A	A1TS	POPTR_0001s12440	POPTR_0001s12440 (11)	scaffold_1:9652896-9653250(+) (11)	NA	NA	NA	AT4G20300.2	Protein of unknown function (DUF1639) 	LOC_Os01g48830.2	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.455.1.A1_at	A	A1TS	POPTR_0004s00590	POPTR_0004s00590 (11)	scaffold_4:226402-226830(+) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G22150.1	plant UBX domain-containing protein 3 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4550.1.S1_at	A	A1TS	POPTR_0014s10260	POPTR_0014s10260 (11)	scaffold_14:7688582-7689012(+) (11)	NA	Q6R0H1	Protein LHY	AT1G01060.5	Homeodomain-like superfamily protein 	LOC_Os08g06110.5	"MYB family transcription factor, putative, expressed"	Medtr7g146200.1	"Ankyrin, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4553.1.S1_s_at	A	A1TS	POPTR_0018s02100	POPTR_0018s02100 (11)	scaffold_18:1871206-1871450(-) (11)	NA	Q6DJ03	Protein MEMO1	AT2G25280.1	"CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). "	LOC_Os08g20270.2	"MEMO1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4554.1.S1_s_at	A	A1TS	POPTR_0001s37650	POPTR_0001s37650 (11)	scaffold_1:36639859-36640302(+) (11)	NA	Q9FM65	Fasciclin-like arabinogalactan protein 1	AT5G55730.2	FASCICLIN-like arabinogalactan 1 	LOC_Os08g23180.1	"fasciclin-like arabinogalactan protein 8 precursor, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4555.1.S1_at	A	A1TS	POPTR_0008s06620	POPTR_0008s06620 (11)	scaffold_8:3959410-3959454(-) (11)	NA	O04204	60S acidic ribosomal protein P0-1	AT2G40010.1	Ribosomal protein L10 family protein 	LOC_Os08g03640.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr5g089540.1	Ribosomal protein L10; Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0042254|ribosome biogenesis||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4555.1.S1_s_at	A	A1TS	POPTR_0008s06620	POPTR_0008s06620 (11)	scaffold_8:3958094-3959120(-) (11)	NA	O04204	60S acidic ribosomal protein P0-1	AT2G40010.1	Ribosomal protein L10 family protein 	LOC_Os08g03640.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr5g089540.1	Ribosomal protein L10; Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0042254|ribosome biogenesis||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4556.1.S1_s_at	A	A1TS	POPTR_0016s04600	POPTR_0016s04600 (11)	scaffold_16:2707145-2708890(+) (11)	POPTR_0016s04700 (7)	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4557.1.S1_s_at	A	A1TS	POPTR_0014s06210	POPTR_0014s06210 (11)	scaffold_14:4730304-4730388(-) (11)	NA	O22152	Axial regulator YABBY 1	AT2G45190.1	Plant-specific transcription factor YABBY family protein 	LOC_Os04g45330.1	"YABBY domain containing protein, putative, expressed"	Medtr8g106280.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4559.1.S1_at	A	A1TS	POPTR_0002s22440	POPTR_0002s22440 (11)	scaffold_2:19173000-19173506(-) (11)	NA	Q8CFY5	"Protoheme IX farnesyltransferase, mitochondrial"	AT2G44520.1	cytochrome c oxidase 10 	LOC_Os01g34390.1	"prenyltransferase, putative, expressed"	Medtr1g146440.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
Ptp.4560.1.S1_s_at	A	A1TS	POPTR_0015s11410	POPTR_0015s11410 (11)	scaffold_15:11981217-11982317(-) (11)	NA	Q9XGY4	Mitochondrial import inner membrane translocase subunit Tim8	AT5G50810.1	translocase inner membrane subunit 8 	LOC_Os08g42380.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr3g151020.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
Ptp.4561.1.S1_s_at	A	A1TS	POPTR_0013s11970	POPTR_0013s11970 (11)	scaffold_13:12631390-12632977(-) (11)	NA	A1L1L3	Tyrosine-protein phosphatase non-receptor type 20	AT1G71860.3	protein tyrosine phosphatase 1 	LOC_Os12g07590.2	"Protein-tyrosine phosphatase domain containing protein, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0004725|protein tyrosine phosphatase activity	NA
Ptp.4562.1.S1_s_at	A	A1TS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13973364-13975134(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4563.1.S1_at	A	A1TS	POPTR_0009s12380	POPTR_0009s12380 (9)	scaffold_9:10120927-10122974(+) (9)	NA	NA	NA	AT4G39100.1	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os07g08880.2	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
Ptp.4564.1.A1_s_at	A	A1TS	POPTR_0010s26160	POPTR_0010s26160 (11)	scaffold_10:21484623-21487235(-) (11)	NA	Q94C60	Transcription elongation factor SPT4 homolog 2	AT5G63670.1	SPT4 homolog 2 	LOC_Os07g43060.2	"transcription elongation factor SPT4 homolog 1, putative, expressed"	Medtr3g122710.1	Transcription initiation Spt4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045941|positive regulation of transcription	GO:0008270|zinc ion binding||GO:0008159|positive transcription elongation factor activity	GO:0005634|nucleus
Ptp.4565.1.S1_at	A	A1MS	POPTR_0008s03290	POPTR_0008s03290 (10)	scaffold_8:1755533-1759430(-) (10)	NA	P49311	Glycine-rich RNA-binding protein GRP2A	AT5G04280.1	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 	LOC_Os07g08960.1	"RNA recognition motif containing protein, expressed"	Medtr2g008300.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.4567.1.S1_at	A	A1TS	POPTR_0001s18630	POPTR_0001s18630 (11)	scaffold_1:15685467-15686148(+) (11)	NA	P29102	"3-isopropylmalate dehydrogenase, chloroplastic"	AT1G80560.1	isopropylmalate dehydrogenase 2 	LOC_Os03g45320.1	"dehydrogenase, putative, expressed"	Medtr2g127240.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.4567.1.S1_s_at	A	A1TS	POPTR_0001s18630	POPTR_0001s18630 (11)	scaffold_1:15686167-15686401(+) (11)	NA	P29102	"3-isopropylmalate dehydrogenase, chloroplastic"	AT1G80560.1	isopropylmalate dehydrogenase 2 	LOC_Os03g45320.1	"dehydrogenase, putative, expressed"	Medtr2g127240.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.4568.1.A1_s_at	A	A1TS	POPTR_0019s11700	POPTR_0019s11700 (11)	scaffold_19:12947887-12948193(-) (11)	NA	Q5XH16	NHP2-like protein 1	AT4G12600.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os03g13800.1	"ribosomal protein L7Ae, putative, expressed"	Medtr8g119890.1	Ribosomal protein L7AE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4569.1.S1_at	A	A1TS	POPTR_0001s19120	POPTR_0001s19120 (11)	scaffold_1:16534950-16535082(+) (11)	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os01g53880.6	"OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.4571.1.S1_at	A	A1TS	POPTR_0003s08180	POPTR_0003s08180 (10)	scaffold_3:9587463-9590736(+) (10)	NA	NA	NA	AT4G17600.1	Chlorophyll A-B binding family protein 	LOC_Os02g03330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4572.1.S1_at	A	A1TS	POPTR_0005s00200	POPTR_0005s00200 (11)	scaffold_5:7340-8227(-) (11)	POPTR_0005s00240 (6)	Q8L7S8	"DEAD-box ATP-dependent RNA helicase 3, chloroplastic"	AT5G26742.2	DEAD box RNA helicase (RH3) 	LOC_Os03g61220.2	"DEAD-box ATP-dependent RNA helicase 3, putative, expressed"	Medtr7g134530.1	"Zinc finger, CCHC-type; ATP-requiring DNA helicase RecQ; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.4573.1.S1_s_at	A	A1TS	POPTR_0007s01030	POPTR_0007s01030 (11)	scaffold_7:561668-563476(+) (11)	NA	Q9S7A9	Squamosa promoter-binding-like protein 4	AT1G53160.1	squamosa promoter binding protein-like 4 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr2g017680.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.4576.1.S1_at	A	A1TS	POPTR_0007s12090	POPTR_0007s12090 (11)	scaffold_7:12415298-12415821(+) (11)	NA	NA	NA	AT2G23690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g52940.1	expressed protein	Medtr5g018720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4577.1.S1_at	A	A1TS	POPTR_0016s08960	POPTR_0016s08960 (11)	scaffold_16:6746278-6746581(+) (11)	NA	Q9SF29	Syntaxin-71	AT3G09740.1	syntaxin of plants 71 	LOC_Os05g48020.1	"SNARE domain containing protein, putative, expressed"	Medtr1g078960.1	Syntaxin/epimorphin family 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4577.1.S1_s_at	A	A1TS	POPTR_0016s08960	POPTR_0016s08960 (9)	scaffold_16:6746567-6749577(+) (9)	NA	Q9SF29	Syntaxin-71	AT3G09740.1	syntaxin of plants 71 	LOC_Os05g48020.1	"SNARE domain containing protein, putative, expressed"	Medtr1g078960.1	Syntaxin/epimorphin family 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4578.1.S1_at	A	A1TS	POPTR_0006s13340	POPTR_0006s13340 (11)	scaffold_6:10550417-10552689(+) (11)	NA	Q3ZBN8	Mitochondrial import inner membrane translocase subunit TIM14	AT2G35795.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g09450.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4580.1.S1_at	A	A1TS	POPTR_0001s23270	POPTR_0001s23270 (11)	scaffold_1:22535671-22537379(+) (11)	NA	Q9FMN4	Thioredoxin-like protein Clot	AT5G42850.2	Thioredoxin superfamily protein 	LOC_Os06g21550.1	"thioredoxin domain-containing protein 17, putative, expressed"	Medtr3g031180.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4581.1.S1_s_at	A	A1TS	POPTR_0013s07440	POPTR_0013s07440 (11)	scaffold_13:6236266-6237497(-) (11)	NA	Q9ZSK1	"Tocopherol O-methyltransferase, chloroplastic"	AT1G64970.1	gamma-tocopherol methyltransferase 	LOC_Os02g47310.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr3g039530.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.4585.1.S1_at	A	A1TS	POPTR_0008s04700	POPTR_0008s04700 (11)	scaffold_8:2699069-2699927(+) (11)	NA	Q7SXR3	Macrophage erythroblast attacher	AT3G55070.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os05g06760.1	"macrophage erythroblast attacher, putative, expressed"	Medtr1g146370.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4587.1.S1_s_at	A	A2TS	POPTR_0001s41370	POPTR_0011s12300 (11)//POPTR_0001s41370 (11)	scaffold_1:40995942-40996252(-) (11)//scaffold_11:15041656-15041966(-) (11)	NA	Q41249	"Protochlorophyllide reductase, chloroplastic"	AT5G54190.1	protochlorophyllide oxidoreductase A 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	Medtr7g118280.1	"Retinol dehydrogenase 12, related "	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4587.1.S1_x_at	A	A1TS	POPTR_0001s41370	POPTR_0001s41370 (10)	scaffold_1:40995644-40996238(-) (10)	NA	Q41249	"Protochlorophyllide reductase, chloroplastic"	AT5G54190.1	protochlorophyllide oxidoreductase A 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	Medtr7g118280.1	"Retinol dehydrogenase 12, related "	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.459.1.S1_s_at	A	A1TS	POPTR_0010s20050	POPTR_0010s20050 (11)	scaffold_10:17804138-17804975(-) (11)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g089140.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4590.1.S1_s_at	A	A1TS	POPTR_0006s14800	POPTR_0006s14800 (11)	scaffold_6:12191252-12191778(-) (11)	NA	Q6P5M2	WD repeat-containing protein 61	AT4G29830.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os11g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4591.1.S1_at	A	A1TA	POPTR_0003s09090	POPTR_0003s09090 (10)	scaffold_3:10409037-10409265(+) (10)	NA	Q39204	Transcription factor MYC2	AT1G32640.1	Basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.4592.1.S1_at	A	A1TS	POPTR_0017s11710	POPTR_0017s11710 (11)	scaffold_17:11470981-11472374(+) (11)	NA	Q01105	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
Ptp.4592.1.S1_s_at	A	A1TS	POPTR_0017s11710	POPTR_0017s11710 (11)	scaffold_17:11472386-11474052(+) (11)	NA	Q01105	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
Ptp.4594.1.S1_at	A	A1TS	POPTR_0010s04700	POPTR_0010s04700 (11)	scaffold_10:5801861-5808453(-) (11)	POPTR_0010s04670 (6)	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4595.1.S1_at	A	A1TS	POPTR_0004s23720	POPTR_0004s23720 (11)	scaffold_4:22346405-22348001(+) (11)	NA	NA	NA	AT5G39600.1	"CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os02g18090.1	expressed protein	Medtr1g016220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4596.1.S1_at	A	A1TS	POPTR_0013s13910	POPTR_0013s13910 (9)	scaffold_13:14230828-14231181(-) (9)	NA	Q9SDT1	"Protochlorophyllide reductase, chloroplastic"	AT1G03630.1	protochlorophyllide oxidoreductase C 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4597.2.S1_s_at	A	A1TS	POPTR_0015s10630	POPTR_0015s10630 (11)	scaffold_15:11509106-11510653(+) (11)	NA	P93447	Elongation factor 1-delta	AT2G18110.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os07g42300.2	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.4598.1.S1_at	A	A1TS	POPTR_0009s04270	POPTR_0009s04270 (11)	scaffold_9:4726689-4726814(+) (11)	NA	P83941	Transcription elongation factor B polypeptide 1	AT5G59140.1	BTB/POZ domain-containing protein 	LOC_Os11g48030.1	"skp1 family, tetramerisation domain containing protein, expressed"	NA	NA	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.4598.1.S1_s_at	A	A1TS	POPTR_0009s04270	POPTR_0009s04270 (11)	scaffold_9:4724858-4726580(+) (11)	NA	P83941	Transcription elongation factor B polypeptide 1	AT5G59140.1	BTB/POZ domain-containing protein 	LOC_Os11g48030.1	"skp1 family, tetramerisation domain containing protein, expressed"	NA	NA	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.460.1.A1_at	A	A1TS	POPTR_0005s03690	POPTR_0005s03690 (9)	scaffold_5:2463512-2464109(+) (9)	NA	Q54TS4	Protein YIPF1 homolog	AT5G27490.1	Integral membrane Yip1 family protein 	LOC_Os01g42480.1	"Yip1 domain containing protein, expressed"	Medtr7g139390.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4603.1.S1_s_at	A	A1TS	POPTR_0013s13230	POPTR_0013s13230 (11)	scaffold_13:13781778-13782398(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g34140.2	expressed protein	Medtr4g128310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4604.1.S1_s_at	A	A1TS	POPTR_0001s24290	POPTR_0001s24290 (11)	scaffold_1:23620291-23620621(-) (11)	NA	P28186	Ras-related protein ARA-3	AT5G59840.1	Ras-related small GTP-binding family protein 	LOC_Os05g38630.2	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4605.1.S1_at	A	A1TS	POPTR_0012s13100	POPTR_0012s13100 (9)	scaffold_12:13398473-13400085(+) (9)	NA	P29144	Tripeptidyl-peptidase 2	AT4G20850.1	tripeptidyl peptidase ii 	LOC_Os02g44520.1	"OsSub19 - Putative Subtilisin homologue, expressed"	Medtr1g127030.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.4606.1.S1_at	A	A1TS	POPTR_0007s01010	POPTR_0007s01010 (10)	scaffold_7:549385-549789(-) (10)	NA	P31691	"ADP,ATP carrier protein, mitochondrial"	AT4G28390.1	ADP/ATP carrier 3 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4607.1.S1_s_at	A	A2TS	POPTR_0002s22620	POPTR_0002s22620 (11)//POPTR_0014s13680 (11)	scaffold_14:10026382-10026487(-) (11)//scaffold_2:19383504-19383609(-) (11)	NA	Q9LPV9	WD repeat-containing protein LWD1	AT1G12910.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g32430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g099620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4609.2.S1_a_at	A	A1TS	POPTR_0002s25850	POPTR_0002s25850 (11)	scaffold_2:22882235-22884198(-) (11)	NA	NA	NA	AT2G20390.1	unknown protein; Has 50 Blast hits to 50 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g51840.3	expressed protein	Medtr7g116910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.461.1.S1_x_at	A	A1TS	POPTR_0010s24930	POPTR_0010s24930 (11)	scaffold_10:20881303-20882057(+) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr4g066990.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.4610.1.S1_at	A	A1TS	POPTR_0004s06120	POPTR_0004s06120 (11)	scaffold_4:4860397-4861916(+) (11)	NA	A8LC45	50S ribosomal protein L24	AT5G23535.1	KOW domain-containing protein 	LOC_Os11g04370.1	"ribosomal protein L24, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4611.1.S1_at	A	A1TS	POPTR_0021s00800	POPTR_0021s00800 (11)	scaffold_21:466559-467454(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G21690.1	MATE efflux family protein 	LOC_Os03g37490.1	"MATE efflux family protein, putative, expressed"	Medtr5g034130.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
Ptp.4612.1.S1_at	A	A1TS	POPTR_0010s08660	POPTR_0010s08660 (11)	scaffold_10:9551417-9551964(+) (11)	NA	Q53389	N-carbamoyl-L-amino acid hydrolase	AT5G43600.1	ureidoglycolate amidohydrolase 	LOC_Os12g40550.1	"peptidase, putative, expressed"	Medtr1g089890.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008237|metallopeptidase activity	NA
Ptp.4615.1.S1_at	A	A1TS	POPTR_0003s07130	POPTR_0003s07130 (11)	scaffold_3:8722340-8722376(-) (11)	NA	Q9C8M9	Protein STRUBBELIG-RECEPTOR FAMILY 6	AT1G53730.1	STRUBBELIG-receptor family 6 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4615.1.S1_s_at	A	A1TS	POPTR_0003s07130	POPTR_0003s07130 (11)	scaffold_3:8720748-8722140(-) (11)	NA	Q9C8M9	Protein STRUBBELIG-RECEPTOR FAMILY 6	AT1G53730.1	STRUBBELIG-receptor family 6 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4616.1.S1_at	A	A1TS	POPTR_0016s09280	POPTR_0016s09280 (11)	scaffold_16:7263751-7263787(-) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.4619.1.S1_at	A	A1TS	POPTR_0001s36700	POPTR_0001s36700 (11)	scaffold_1:35402010-35403112(+) (11)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.462.1.S1_at	A	A1TS	POPTR_0008s19600	POPTR_0008s19600 (9)	scaffold_8:13504032-13504306(-) (9)	NA	NA	NA	AT1G69980.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g38750.1	expressed protein	Medtr5g038130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4620.1.S1_a_at	A	A1TS	POPTR_0003s03090	POPTR_0003s03090 (11)	scaffold_3:3444192-3444341(-) (11)	NA	Q5RDY2	Transmembrane 9 superfamily member 4	AT3G13772.1	transmembrane nine 7 	LOC_Os06g37160.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr1g016840.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
Ptp.4620.1.S1_s_at	A	A1TS	POPTR_0003s03090	POPTR_0003s03090 (11)	scaffold_3:3444500-3444677(-) (11)	NA	Q5RDY2	Transmembrane 9 superfamily member 4	AT3G13772.1	transmembrane nine 7 	LOC_Os06g37160.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr1g016840.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
Ptp.4621.1.A1_a_at	A	A1TS	POPTR_0005s05450	POPTR_0005s05450 (11)	scaffold_5:3606669-3606983(-) (11)	NA	A2Z7B3	"GDP-mannose 3,5-epimerase 1"	AT5G28840.2	"GDP-D-mannose 3',5'-epimerase "	LOC_Os10g28200.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr7g140940.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4621.3.S1_s_at	A	A1TS	POPTR_0005s22130	POPTR_0005s22130 (11)	scaffold_5:21107470-21108979(+) (11)	NA	Q9M9G7	Probable F-actin-capping protein subunit beta	AT1G71790.1	Subunits of heterodimeric actin filament capping protein Capz superfamily 	LOC_Os03g26450.1	"F-actin-capping protein subunit beta, putative, expressed"	NA	NA	GO:0030036|actin cytoskeleton organization	GO:0003779|actin binding	GO:0005737|cytoplasm||GO:0008290|F-actin capping protein complex
Ptp.4622.1.S1_s_at	A	A1TS	POPTR_0010s26000	POPTR_0010s26000 (11)	scaffold_10:21390956-21391429(-) (11)	NA	P31405	V-type proton ATPase catalytic subunit A	AT1G78900.2	vacuolar ATP synthase subunit A 	LOC_Os06g45120.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.4623.1.S1_at	A	A1TS	POPTR_0002s03550	POPTR_0002s03550 (9)	scaffold_2:2213167-2213210(-) (9)	NA	Q54JC2	Uncharacterized protein DDB_G0288155	AT1G19580.1	gamma carbonic anhydrase 1 	LOC_Os12g07220.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
Ptp.4624.1.S1_at	A	A1TS	POPTR_0017s11290	POPTR_0017s11290 (11)	scaffold_17:11046207-11046491(-) (11)	NA	Q32RS0	Pyruvate dehydrogenase E1 component subunit beta	AT2G34590.1	Transketolase family protein 	LOC_Os12g42230.1	"transketolase, putative, expressed"	Medtr3g115120.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4626.1.S1_s_at	A	A1TS	POPTR_0002s25030	POPTR_0002s25030 (10)	scaffold_2:22236421-22237257(-) (10)	NA	Q11066	Uncharacterized HIT-like protein Rv1262c/MT1300	AT5G48545.1	histidine triad nucleotide-binding 3 	LOC_Os11g18990.1	"histidine triad family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4628.1.S1_s_at	A	A1TS	POPTR_0001s23950	POPTR_0001s23950 (11)	scaffold_1:23331178-23331636(-) (11)	NA	NA	NA	AT3G13510.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4629.1.S1_s_at	A	A1MS	POPTR_0001s08020	POPTR_0001s08020 (10)	scaffold_1:6080719-6081395(+) (11)	NA	Q9C5X3	SNARE-interacting protein KEULE	AT1G12360.1	Sec1/munc18-like (SM) proteins superfamily 	LOC_Os02g25580.1	"Sec1 family transport protein, putative, expressed"	Medtr8g106730.1	Sec1-like protein 	GO:0006904|vesicle docking during exocytosis	NA	NA
Ptp.463.1.S1_at	A	A1TS	POPTR_0006s26130	POPTR_0006s26130 (9)	scaffold_6:24421480-24421879(+) (9)	NA	Q551A3	Leucine-rich repeat-containing protein DDB_G0276689	AT2G25730.2	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages. 	LOC_Os01g40990.3	expressed protein	Medtr3g135820.1	Tetratricopeptide TPR2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4630.1.S1_at	A	A1TS	POPTR_0001s03880	POPTR_0001s03880 (10)	scaffold_1:3120553-3120836(+) (10)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os03g59760.2	"RING finger protein 126, putative, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4631.1.S1_s_at	A	A1TS	POPTR_0005s23610	POPTR_0005s23610 (11)	scaffold_5:22332345-22332449(+) (11)	POPTR_0002s04910 (8)	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4633.1.S1_at	A	A1TS	POPTR_0018s13340	POPTR_0018s13340 (11)	scaffold_18:13696907-13696971(-) (11)	NA	NA	NA	AT4G29850.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os02g07980.1	expressed protein	Medtr8g130380.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4635.1.S1_at	A	A1TS	POPTR_0007s06230	POPTR_0007s06230 (11)	scaffold_7:4392704-4394565(+) (11)	NA	NA	NA	AT4G39630.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g19370.1	expressed protein	Medtr6g025300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4637.1.S1_s_at	A	A1TS	POPTR_0012s11290	POPTR_0012s11290 (11)	scaffold_12:11793660-11794014(+) (11)	NA	P29402	Calnexin homolog 1	AT5G61790.1	calnexin 1 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr3g151490.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.4639.1.S1_at	A	A1TS	POPTR_0014s02280	POPTR_0014s02280 (9)	scaffold_14:1937193-1938327(+) (9)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os03g64030.1	"receptor protein kinase, putative, expressed"	Medtr1g023770.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4639.2.S1_s_at	A	A1TS	POPTR_0014s02280	POPTR_0014s02280 (11)	scaffold_14:1936991-1937200(+) (11)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT4G34215.2	Domain of unknown function (DUF303)  	LOC_Os03g64030.1	"receptor protein kinase, putative, expressed"	Medtr1g023770.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.464.1.A1_at	A	A1TS	POPTR_0002s19060	POPTR_0002s19060 (9)	scaffold_2:14963991-14964533(-) (9)	NA	Q8S528	"Aldehyde dehydrogenase family 2 member B7, mitochondrial"	AT1G23800.1	aldehyde dehydrogenase 2B7 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4641.1.S1_at	A	A1TS	POPTR_0010s08450	POPTR_0010s08450 (11)	scaffold_10:9361284-9361584(-) (11)	NA	NA	NA	AT4G14440.1	3-hydroxyacyl-CoA dehydratase 1 	LOC_Os05g45300.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr2g015150.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4643.1.S1_at	A	A1TS	POPTR_0001s18420	POPTR_0001s18420 (11)	scaffold_1:15480327-15481453(-) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.4643.2.A1_s_at	A	A1TS	POPTR_0001s18420	POPTR_0001s18420 (11)	scaffold_1:15480078-15480143(-) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.4645.1.S1_at	A	A1TS	POPTR_0017s13550	POPTR_0017s13550 (11)	scaffold_17:13679697-13680141(+) (11)	NA	Q5T4S7	E3 ubiquitin-protein ligase UBR4	AT3G02260.1	auxin transport protein (BIG) 	LOC_Os09g07300.1	"BIG, putative, expressed"	Medtr7g015210.1	"Zinc finger, ZZ-type; Zinc finger, C2H2-type "	NA	GO:0004842|ubiquitin-protein ligase activity||GO:0008270|zinc ion binding	NA
Ptp.4645.1.S1_s_at	A	A1TS	POPTR_0017s13550	POPTR_0017s13550 (11)	scaffold_17:13679710-13680187(+) (11)	NA	Q5T4S7	E3 ubiquitin-protein ligase UBR4	AT3G02260.1	auxin transport protein (BIG) 	LOC_Os09g07300.1	"BIG, putative, expressed"	Medtr7g015210.1	"Zinc finger, ZZ-type; Zinc finger, C2H2-type "	NA	GO:0004842|ubiquitin-protein ligase activity||GO:0008270|zinc ion binding	NA
Ptp.4647.1.S1_at	A	A1TS	POPTR_0016s12760	POPTR_0016s12760 (11)	scaffold_16:12137973-12138701(+) (11)	NA	A2XFI3	Pyruvate decarboxylase isozyme 2	AT4G33070.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr3g166930.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
Ptp.4648.1.S1_s_at	A	A1TS	POPTR_0008s05560	POPTR_0008s05560 (11)	scaffold_8:3229964-3231405(+) (11)	NA	P30171	Actin-97	AT3G12110.1	actin-11 	LOC_Os03g50885.1	"actin, putative, expressed"	Medtr7g027010.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.4649.1.S1_s_at	A	A1TS	POPTR_0001s37520	POPTR_0001s37520 (11)	scaffold_1:36496823-36497301(+) (11)	NA	NA	NA	AT3G13130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). 	NA	NA	Medtr5g103200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4651.1.S1_s_at	A	A1TS	POPTR_0011s14150	POPTR_0011s14150 (11)	scaffold_11:16676217-16677188(+) (11)	NA	O13759	RNA-binding post-transcriptional regulator csx1	AT5G54900.1	RNA-binding protein 45A 	LOC_Os03g37270.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4652.1.S1_s_at	A	A1TS	POPTR_0001s35960	POPTR_0001s35960 (11)	scaffold_1:34420719-34420927(-) (11)	NA	O24554	Pectate lyase	AT3G27400.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4653.1.S1_at	A	A1TS	POPTR_0021s01090	POPTR_0021s01090 (9)	scaffold_21:659971-660974(-) (9)	NA	Q6DHV7	Adenosine deaminase-like protein	AT4G04880.1	adenosine/AMP deaminase family protein 	LOC_Os07g46630.1	"AMP deaminase, putative, expressed"	Medtr8g146450.1	Adenosine/AMP deaminase 	GO:0044281|small molecule metabolic process||GO:0009168|purine ribonucleoside monophosphate biosynthetic process	GO:0019239|deaminase activity	NA
Ptp.4654.1.S1_at	A	A1TS	POPTR_0001s29370	POPTR_0001s29370 (11)	scaffold_1:28073869-28074616(-) (11)	NA	Q9LXC9	"Soluble inorganic pyrophosphatase 1, chloroplastic"	AT5G09650.1	pyrophosphorylase 6 	LOC_Os02g52940.2	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr2g010460.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.4655.1.S1_at	A	A1TS	POPTR_0013s01950	POPTR_0013s01950 (11)	scaffold_13:1125069-1126605(-) (11)	POPTR_0005s02700 (6)	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT3G05420.2	acyl-CoA binding protein 4 	LOC_Os03g61930.1	"ACBP4, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	NA	GO:0000062|acyl-CoA binding	NA
Ptp.4656.1.S1_s_at	A	A1TS	POPTR_0011s12710	POPTR_0011s12710 (11)	scaffold_11:15407243-15407459(+) (11)	NA	NA	NA	AT5G54240.1	Protein of unknown function (DUF1223) 	LOC_Os07g37310.1	"uncharacterized secreted protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4660.1.S1_at	A	A1TS	POPTR_0008s19430	POPTR_0008s19430 (11)	scaffold_8:13381593-13382086(+) (11)	NA	P92990	Probable polygalacturonase non-catalytic subunit JP650	AT1G70370.2	polygalacturonase 2 	LOC_Os08g29200.1	"BURP domain containing protein, expressed"	Medtr5g035640.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4661.1.S1_s_at	A	A1TS	POPTR_0011s03570	POPTR_0011s03570 (11)	scaffold_11:3634026-3634593(-) (11)	NA	B9M4V3	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.4662.1.S1_s_at	A	A1TS	POPTR_0014s15450	POPTR_0014s15450 (11)	scaffold_14:11506560-11507393(-) (11)	NA	Q55BK0	Ubiquitin fusion degradation protein 1 homolog	AT4G15420.1	Ubiquitin fusion degradation UFD1 family protein 	LOC_Os01g35040.1	"ZOS1-09 - C2H2 zinc finger protein, expressed"	Medtr5g093620.1	"Ubiquitin fusion degradation protein UFD1; Zinc finger, C2H2-type; Peptidase, archaeal and bacterial C-terminal "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.4665.1.A1_s_at	A	A1TS	POPTR_0005s20380	POPTR_0005s20380 (11)	scaffold_5:19430205-19430265(+) (11)	NA	Q9C6Y3	Cyclin-A1-1	AT1G44110.1	Cyclin A1;1 	LOC_Os01g13260.1	"cyclin-A1, putative, expressed"	Medtr4g144920.1	Cyclin-like; ; 	NA	NA	GO:0005634|nucleus
Ptp.4666.1.S1_s_at	A	A1TS	POPTR_0001s37260	POPTR_0001s37260 (11)	scaffold_1:36227527-36227869(+) (11)	NA	Q93WV0	Probable WRKY transcription factor 20	AT4G26640.2	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.4667.1.S1_s_at	A	A1TS	POPTR_0001s13510	POPTR_0001s13510 (11)	scaffold_1:10586985-10587846(-) (11)	POPTR_0003s16650 (6)	Q43793	"Glucose-6-phosphate 1-dehydrogenase, chloroplastic"	AT5G13110.1	glucose-6-phosphate dehydrogenase 2 	LOC_Os07g22350.1	"glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed"	Medtr7g022440.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
Ptp.4668.1.S1_at	A	A1TS	POPTR_0005s09970	POPTR_0005s09970 (11)	scaffold_5:7076198-7077092(+) (11)	NA	Q6DRN3	Nucleolar complex protein 3 homolog	AT1G79150.1	binding 	LOC_Os06g30320.1	"NOC3 - Putative nucleolar complex subunit 3, expressed"	Medtr7g076380.1	CBF; Nucleolar complex-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.467.1.S1_at	A	A1TS	POPTR_0008s01910	POPTR_0008s01910 (9)	scaffold_8:912322-912805(-) (9)	NA	NA	NA	AT3G10630.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os09g12530.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr1g112250.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.4670.1.S1_s_at	A	A1TS	POPTR_0008s10480	POPTR_0008s10480 (11)	scaffold_8:6567316-6567494(-) (11)	NA	Q54YA0	Probable ATP-citrate synthase	AT3G06650.1	ATP-citrate lyase B-1 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4672.1.S1_at	A	A1TS	POPTR_0002s10600	POPTR_0002s10600 (10)	scaffold_2:7689663-7690460(+) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT4G24530.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr3g149400.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4674.1.S1_at	A	A1TS	POPTR_0014s06740	POPTR_0014s06740 (11)	scaffold_14:5097858-5098384(-) (11)	NA	Q9LZX4	Fasciclin-like arabinogalactan protein 10	AT3G60900.1	FASCICLIN-like arabinogalactan-protein 10 	LOC_Os04g48490.1	"fasciclin-like arabinogalactan protein, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4674.1.S1_x_at	A	A1TS	POPTR_0014s06740	POPTR_0014s06740 (11)	scaffold_14:5097858-5098384(-) (11)	NA	Q9LZX4	Fasciclin-like arabinogalactan protein 10	AT3G60900.1	FASCICLIN-like arabinogalactan-protein 10 	LOC_Os04g48490.1	"fasciclin-like arabinogalactan protein, putative, expressed"	Medtr5g106070.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4675.1.S1_s_at	A	A1TS	POPTR_0006s03180	POPTR_0006s03180 (11)	scaffold_6:2004466-2004709(-) (11)	NA	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4676.1.S1_s_at	A	A1TS	POPTR_0010s11840	POPTR_0010s11840 (11)	scaffold_10:11977617-11977966(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4676.2.A1_s_at	A	A1TS	POPTR_0010s11840	POPTR_0010s11840 (11)	scaffold_10:11977645-11979177(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4677.1.S1_at	A	A2TS	POPTR_0016s05880	POPTR_0016s05880 (11)//POPTR_0149s00210 (9)	scaffold_149:20349-20469(+) (9)//scaffold_16:3819830-3820107(+) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os01g61420.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4678.1.S1_at	A	A1TS	POPTR_0007s13960	POPTR_0007s13960 (11)	scaffold_7:13941926-13942324(-) (11)	NA	P93031	"GDP-mannose 4,6 dehydratase 2"	AT3G51160.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g04620.1	"GDP-mannose 4,6 dehydratase 2, putative, expressed"	Medtr5g021700.1	"NAD-dependent epimerase/dehydratase; Short-chain dehydrogenase/reductase SDR; GDP-mannose 4,6-dehydratase "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4679.1.A1_s_at	A	A1TS	POPTR_0017s14470	POPTR_0017s14470 (11)	scaffold_17:14506441-14507292(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
Ptp.4680.1.S1_at	A	A1TS	POPTR_0013s04010	POPTR_0013s04010 (11)	scaffold_13:2628365-2628417(-) (11)	NA	NA	NA	AT1G54460.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4682.1.S1_a_at	A	A1TS	POPTR_0002s10490	POPTR_0002s10490 (11)	scaffold_2:7571089-7572274(-) (11)	NA	NA	NA	AT1G09740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g52314.1	"BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed"	Medtr5g075020.3	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
Ptp.4682.1.S1_at	A	A1TS	POPTR_0002s10490	POPTR_0002s10490 (10)	scaffold_2:7570918-7571049(-) (10)	NA	NA	NA	AT1G09740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g52314.1	"BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed"	Medtr5g075020.3	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
Ptp.4684.1.S1_s_at	A	A2TS	POPTR_0009s07150	POPTR_0009s07150 (11)//POPTR_1455s00200 (9)	scaffold_1455:8-92(-) (9)//scaffold_9:6758696-6758790(+) (11)	NA	Q43594	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.4685.1.S1_at	A	A1TS	POPTR_0005s25750	POPTR_0005s25750 (10)	scaffold_5:23954679-23955064(+) (10)	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4687.1.S1_at	A	A1TS	POPTR_0013s01360	POPTR_0013s01360 (10)	scaffold_13:757725-758293(-) (10)	POPTR_0005s02160 (6)	Q84JM4	Topless-related protein 3	AT5G27030.1	TOPLESS-related 3 	LOC_Os01g15020.1	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr1g100210.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4688.1.S1_s_at	A	A1TS	POPTR_0003s06930	POPTR_0003s06930 (11)	scaffold_3:8491072-8492600(-) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.4689.1.S1_at	A	A1TA	POPTR_0022s00320	POPTR_0022s00320 (10)	scaffold_22:68342-68872(-) (10)	NA	NA	NA	AT1G09610.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4690.1.S1_at	A	A1TS	POPTR_0012s01120	POPTR_0012s01120 (11)	scaffold_12:775754-776026(-) (11)	POPTR_0015s05960 (7)	Q38953	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G26560.1	"ATP-dependent RNA helicase, putative "	LOC_Os02g19860.1	"pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed"	Medtr1g143710.1	"Helicase, C-terminal; ATP-dependent helicase HrpB; Nucleic acid-binding, OB-fold, subgroup; "	NA	GO:0003723|RNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.4692.1.S1_at	A	A1MS	POPTR_0013s15600	POPTR_0013s15600 (9)	scaffold_13:15535753-15535823(+) (9)	NA	Q5M7Z0	RING finger and transmembrane domain-containing protein 1	AT5G01960.1	RING/U-box superfamily protein 	LOC_Os01g07390.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr7g080680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4692.1.S1_s_at	A	A1TS	POPTR_0013s15600	POPTR_0013s15600 (11)	scaffold_13:15535973-15536186(+) (11)	NA	Q5M7Z0	RING finger and transmembrane domain-containing protein 1	AT5G01960.1	RING/U-box superfamily protein 	LOC_Os01g07390.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr7g080680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4693.1.S1_s_at	A	A1TS	POPTR_0016s05600	POPTR_0016s05600 (11)	scaffold_16:3527119-3527585(-) (11)	POPTR_0006s04950 (7)	NA	NA	AT2G41770.1	Protein of unknown function (DUF288) 	LOC_Os05g32500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4697.1.A1_a_at	A	A1MS	POPTR_0007s04640	POPTR_0007s04640 (11)	scaffold_7:2875238-2875573(-) (11)	NA	NA	NA	AT5G27820.1	Ribosomal L18p/L5e family protein 	LOC_Os03g48840.3	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr1g143500.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4697.2.A1_a_at	A	A1MS	POPTR_0007s04640	POPTR_0007s04640 (11)	scaffold_7:2875229-2875573(-) (11)	NA	NA	NA	AT5G27820.1	Ribosomal L18p/L5e family protein 	LOC_Os03g48840.3	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr1g143500.1	Ribosomal protein L18P/L5E 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4698.1.S1_at	A	A1TS	POPTR_0017s10480	POPTR_0017s10480 (11)	scaffold_17:9913241-9914291(+) (11)	NA	Q54GI9	"Prohibitin-1, mitochondrial"	AT5G40770.1	prohibitin 3 	LOC_Os02g37000.1	"mitochondrial prohibitin complex protein 1, putative, expressed"	Medtr3g009610.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.47.1.A1_at	A	A1TS	POPTR_0006s21010	POPTR_0006s21010 (11)	scaffold_6:20126010-20127413(+) (11)	NA	Q9FDZ9	60S ribosomal protein L21-2	AT1G57860.1	Translation protein SH3-like family protein 	LOC_Os10g32820.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4700.1.S1_s_at	A	A1TS	POPTR_0007s01850	POPTR_0007s01850 (11)	scaffold_7:1068711-1068817(-) (11)	NA	Q42896	Fructokinase-2	AT2G31390.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g66940.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4703.1.S1_at	A	A1TS	POPTR_0009s01490	POPTR_0009s01490 (10)	scaffold_9:1860723-1861386(+) (10)	NA	NA	NA	AT5G60720.1	"Protein of unknown function, DUF547 "	LOC_Os03g64230.1	expressed protein	Medtr5g087330.1	Protein of unknown function DUF547 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4705.1.S1_at	A	A1TS	POPTR_0002s21280	POPTR_0002s21280 (11)	scaffold_2:17682640-17683126(+) (11)	NA	A8MRC7	"Probable beta-1,3-galactosyltransferase 2"	AT1G05170.1	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
Ptp.4706.1.S1_s_at	A	A1TS	POPTR_0017s12760	POPTR_0017s12760 (11)	scaffold_17:12926703-12927135(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT3G29360.2	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25690.1	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.4707.2.A1_a_at	A	A1TS	POPTR_0005s01380	POPTR_0005s01380 (11)	scaffold_5:919520-921395(+) (11)	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os01g22870.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
Ptp.4708.1.S1_s_at	A	A1TS	POPTR_0014s01060	POPTR_0014s01060 (11)	scaffold_14:992295-993105(-) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT2G22620.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127450.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.471.1.S1_s_at	A	A1TS	POPTR_0008s09480	POPTR_0008s09480 (11)	scaffold_8:5875805-5877044(+) (11)	NA	Q93V72	"Glucan endo-1,3-beta-glucosidase-like protein At1g69295"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4710.1.S1_s_at	A	A1TS	POPTR_0009s11170	POPTR_0009s11170 (11)	scaffold_9:9376169-9376743(+) (11)	NA	Q8L3W1	B3 domain-containing transcription factor VRN1	AT3G18990.1	AP2/B3-like transcriptional factor family protein 	NA	NA	Medtr4g092810.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
Ptp.4711.1.S1_s_at	A	A4TS	POPTR_0004s11250	POPTR_0017s13510 (11)//POPTR_0004s11250 (11)//POPTR_0004s11260 (11)//POPTR_0017s13530 (11)	scaffold_17:13637761-13637799(+) (11)//scaffold_17:13640759-13640797(+) (11)//scaffold_17:13649956-13649994(+) (11)//scaffold_4:9872555-9872593(-) (11)//scaffold_4:9883750-9883788(-) (11)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4712.1.S1_at	A	A1MS	POPTR_0015s12840	POPTR_0015s12840 (11)	scaffold_15:13043040-13043545(+) (11)	POPTR_0013s11380 (7)	Q42538	Serine acetyltransferase 5	AT5G56760.1	serine acetyltransferase 1;1 	LOC_Os05g45710.1	"serine acetyltransferase protein, putative, expressed"	Medtr4g125940.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
Ptp.4714.1.S1_s_at	A	A1TS	POPTR_0008s13140	POPTR_0008s13140 (11)	scaffold_8:8586547-8586902(+) (11)	NA	Q8LBH2	Putative clathrin assembly protein At2g01600	AT2G01600.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os05g47550.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr8g129660.1	"Carbamoyl-phosphate synthase L chain, ATP-binding; ENTH/VHS; ANTH; "	NA	GO:0005543|phospholipid binding	NA
Ptp.4715.1.A1_a_at	A	A1TS	POPTR_0018s09690	POPTR_0018s09690 (11)	scaffold_18:10705473-10705883(+) (11)	NA	O65570	Villin-4	AT4G30160.1	villin 4 	LOC_Os06g44890.1	"villin protein, putative, expressed"	Medtr2g041680.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.4715.2.S1_s_at	A	A1TS	POPTR_0018s09690	POPTR_0018s09690 (10)	scaffold_18:10705741-10706119(+) (10)	NA	O65570	Villin-4	AT4G30160.1	villin 4 	LOC_Os06g44890.1	"villin protein, putative, expressed"	Medtr2g041680.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.4717.1.S1_at	A	A1TS	POPTR_0019s12550	POPTR_0019s12550 (11)	scaffold_19:13603321-13603880(+) (11)	POPTR_0013s13090 (8)	Q8LPG9	Protein IQ-DOMAIN 14	AT3G59690.1	IQ-domain 13 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4718.1.S1_s_at	A	A1TS	POPTR_0005s18080	POPTR_0005s18080 (11)	scaffold_5:16116042-16116673(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0007050|cell cycle arrest	GO:0004861|cyclin-dependent protein kinase inhibitor activity	GO:0005634|nucleus
Ptp.472.1.A1_at	A	A1TS	POPTR_0005s27500	POPTR_0005s27500 (9)	scaffold_5:25133958-25135686(+) (9)	NA	Q2L6L1	Protein canopy-1	AT1G42480.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3456 (InterPro:IPR021852); Has 177 Blast hits to 177 proteins in 59 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g02524.1	"canopy homolog 2 precursor, putative, expressed"	Medtr3g160110.1	"Protein canopy homolog 2 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4721.1.S1_at	A	A1TS	POPTR_0007s12340	POPTR_0007s12340 (11)	scaffold_7:12662277-12662744(-) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
Ptp.4722.1.S1_s_at	A	A1TS	POPTR_0014s15770	POPTR_0014s15770 (11)	scaffold_14:11836342-11836677(+) (11)	NA	Q94AD9	Zinc finger CCCH domain-containing protein 3	AT1G04990.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g092550.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.4723.1.S1_s_at	A	A1TS	POPTR_0010s11950	POPTR_0010s11950 (11)	scaffold_10:12078878-12079273(+) (11)	NA	P17407	21 kDa protein	AT1G14890.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr8g138370.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.4724.1.S1_at	A	A1TS	POPTR_0018s07200	POPTR_0018s07200 (10)	scaffold_18:7394895-7400971(-) (11)	NA	NA	NA	AT5G20520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41730.1	"OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4725.1.S1_s_at	A	A1TS	POPTR_0025s00560	POPTR_0025s00560 (11)	scaffold_25:253192-253232(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.4728.1.S1_at	A	A1TS	POPTR_0001s17420	POPTR_0001s17420 (10)	scaffold_1:14211093-14211513(+) (11)	NA	NA	NA	AT1G52720.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g07970.1	expressed protein	Medtr8g119350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4729.1.S1_at	A	A1TS	POPTR_0017s03490	POPTR_0017s03490 (11)	scaffold_17:2528869-2529526(-) (11)	NA	NA	NA	AT1G73390.3	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os02g58160.2	expressed protein	Medtr6g088880.1	BRO1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4730.1.A1_s_at	A	A1TS	POPTR_0016s09230	POPTR_0016s09230 (9)	scaffold_16:7226681-7227190(+) (9)	NA	P45730	Phenylalanine ammonia-lyase	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os04g43800.1	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
Ptp.4731.1.A1_s_at	A	A1TS	POPTR_0001s12580	POPTR_0001s12580 (11)	scaffold_1:9750356-9750619(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4732.1.S1_s_at	A	A1TS	POPTR_0014s10950	POPTR_0014s10950 (11)	scaffold_14:8167635-8168797(-) (11)	NA	Q41328	Pto-interacting protein 1	AT3G62220.1	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4733.1.S1_at	A	A1TS	POPTR_0005s07500	POPTR_0005s07500 (10)	scaffold_5:5118400-5118661(+) (10)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr3g111140.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4734.1.S1_at	A	A1TS	POPTR_0007s10720	POPTR_0007s10720 (9)	scaffold_7:10761504-10763513(+) (9)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G67200.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4735.1.S1_at	A	A1TS	POPTR_0015s08900	POPTR_0015s08900 (11)	scaffold_15:10257887-10258116(-) (11)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.4736.1.S1_s_at	A	A1TS	POPTR_0016s05650	POPTR_0016s05650 (11)	scaffold_16:3577326-3578173(+) (11)	NA	O81644	Villin-2	AT2G41740.1	villin 2 	LOC_Os03g24220.2	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.4737.1.A1_at	A	A1TS	POPTR_0011s16950	POPTR_0011s16950 (11)	scaffold_11:18656252-18656520(+) (11)	NA	Q7KZN9	Cytochrome c oxidase assembly protein COX15 homolog	AT5G56090.1	cytochrome c oxidase 15 	LOC_Os08g38720.1	"cytochrome c oxidase assembly protein COX15, putative, expressed"	Medtr5g104460.1	Cytochrome oxidase assembly 	GO:0006461|protein complex assembly	NA	GO:0016020|membrane
Ptp.4737.1.A1_s_at	A	A1TS	POPTR_0011s16950	POPTR_0011s16950 (11)	scaffold_11:18655915-18656425(+) (11)	NA	Q7KZN9	Cytochrome c oxidase assembly protein COX15 homolog	AT5G56090.1	cytochrome c oxidase 15 	LOC_Os08g38720.1	"cytochrome c oxidase assembly protein COX15, putative, expressed"	Medtr5g104460.1	Cytochrome oxidase assembly 	GO:0006461|protein complex assembly	NA	GO:0016020|membrane
Ptp.4739.1.S1_s_at	A	A1TS	POPTR_0013s09270	POPTR_0013s09270 (11)	scaffold_13:8919217-8920730(+) (11)	NA	P35017	"Superoxide dismutase [Mn], mitochondrial"	AT3G10920.1	manganese superoxide dismutase 1 	LOC_Os05g25850.1	"superoxide dismutase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
Ptp.474.1.A1_at	A	A1TS	POPTR_0005s27150	POPTR_0005s27150 (11)	scaffold_5:24935946-24935980(-) (11)	NA	Q5XGY1	Pre-rRNA-processing protein TSR1 homolog	AT1G42440.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). "	LOC_Os11g19250.1	"AARP2CN domain containing protein, expressed"	Medtr4g092630.2	AARP2CN 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
Ptp.474.1.A1_s_at	A	A1TS	POPTR_0005s27150	POPTR_0005s27150 (11)	scaffold_5:24935719-24936468(-) (11)	NA	Q5XGY1	Pre-rRNA-processing protein TSR1 homolog	AT1G42440.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). "	LOC_Os11g19250.1	"AARP2CN domain containing protein, expressed"	Medtr4g092630.2	AARP2CN 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
Ptp.4740.1.S1_at	A	A1TS	POPTR_0002s03540	POPTR_0002s03540 (11)	scaffold_2:2202704-2202911(-) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4740.1.S1_s_at	A	A2TS	POPTR_0002s03540	POPTR_0005s25070 (11)//POPTR_0002s03540 (11)	scaffold_2:2202779-2203370(-) (11)//scaffold_5:23417875-23418479(+) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4742.2.S1_a_at	A	A1TS	POPTR_0019s04700	POPTR_0019s04700 (11)	scaffold_19:4897494-4899654(+) (11)	NA	NA	NA	AT2G39050.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os07g48500.1	"stress responsive protein, putative, expressed"	Medtr7g100110.1	"glycoamidase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4743.1.S1_at	A	A1TS	POPTR_0013s03250	POPTR_0013s03250 (10)	scaffold_13:1991256-1991771(-) (10)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G54610.3	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr7g140180.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4744.1.A1_at	A	A1TS	POPTR_0016s06300	POPTR_0016s06300 (9)	scaffold_16:4233018-4234196(+) (9)	NA	P34789	40S ribosomal protein S28-2	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4744.1.A1_x_at	A	A1TS	POPTR_0016s06300	POPTR_0016s06300 (10)	scaffold_16:4233018-4234195(+) (10)	NA	P34789	40S ribosomal protein S28-2	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4747.1.A1_s_at	A	A1TS	POPTR_0004s16120	POPTR_0004s16120 (11)	scaffold_4:16556339-16557248(-) (11)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr3g159470.2	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4747.1.A1_x_at	A	A1TS	POPTR_0004s16120	POPTR_0004s16120 (10)	scaffold_4:16556249-16557246(-) (11)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr3g159470.2	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.475.1.S1_s_at	A	A1TS	POPTR_0005s02070	POPTR_0005s02070 (11)	scaffold_5:1338229-1338480(-) (11)	NA	Q9SUJ1	Syntaxin-43	AT5G26980.2	syntaxin of plants 41 	LOC_Os06g02570.1	"syntaxin, putative, expressed"	Medtr1g100300.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
Ptp.4751.1.S1_at	A	A1TS	POPTR_0012s07110	POPTR_0012s07110 (11)	scaffold_12:7805474-7805616(+) (11)	NA	Q9S7V4	HVA22-like protein a	AT1G74520.1	HVA22 homologue A 	LOC_Os02g51290.1	"HVA22, putative, expressed"	Medtr8g112530.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4752.1.S1_at	A	A1TS	POPTR_0004s08460	POPTR_0004s08460 (11)	scaffold_4:6998229-6999778(-) (11)	NA	Q6NZW8	ADP-ribosylation factor-like protein 8B-A	AT5G37680.1	ADP-ribosylation factor-like A1A 	LOC_Os02g49980.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g085850.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4753.1.S1_at	A	A1TS	POPTR_0013s05620	POPTR_0013s05620 (11)	scaffold_13:4018343-4018463(-) (11)	NA	Q6NKW9	"Glucan endo-1,3-beta-glucosidase 8"	AT1G64760.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g57880.3	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr6g030630.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4754.1.S1_at	A	A1TS	POPTR_0001s08860	POPTR_0001s08860 (9)	scaffold_1:6766471-6766884(-) (9)	NA	Q9FXW4	Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT1G33720.1	"cytochrome P450, family 76, subfamily C, polypeptide 6 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4755.1.S1_at	A	A1TS	POPTR_0006s06440	POPTR_0006s06440 (9)	scaffold_6:4597691-4597934(-) (9)	NA	Q08CL8	CCR4-NOT transcription complex subunit 10	AT5G35430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g03600.1	"immunoglobulin/major histocompatibility complex, putative, expressed"	Medtr8g121410.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4757.1.S1_s_at	A	A1TS	POPTR_0003s17920	POPTR_0003s17920 (11)	scaffold_3:17160908-17161741(+) (11)	NA	Q9LMP7	Golgi SNARE 11 protein	AT1G15880.1	golgi snare 11 	LOC_Os08g34140.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr4g022490.1	Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4758.1.S1_at	A	A1TS	POPTR_0008s12030	POPTR_0008s12030 (11)	scaffold_8:7760703-7761070(-) (11)	NA	NA	NA	AT1G25420.3	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os01g49350.1	"DUF292 domain containing protein, expressed"	Medtr1g140920.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4758.2.A1_a_at	A	A1TS	POPTR_0008s12030	POPTR_0008s12030 (11)	scaffold_8:7761090-7761296(-) (11)	NA	NA	NA	AT1G25420.3	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os01g49350.1	"DUF292 domain containing protein, expressed"	Medtr1g140920.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4758.2.A1_at	A	A1TA	POPTR_0008s12030	POPTR_0008s12030 (10)	scaffold_8:7760740-7761036(+) (10)	NA	NA	NA	AT1G25420.3	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os01g49350.1	"DUF292 domain containing protein, expressed"	Medtr1g140920.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4759.1.S1_at	A	A1TS	POPTR_0008s18090	POPTR_0008s18090 (11)	scaffold_8:12117738-12121810(+) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT3G27320.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g67600.1	"CXE carboxylesterase, putative, expressed"	Medtr6g071010.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.476.1.S1_at	A	A1TS	POPTR_0001s27110	POPTR_0001s27110 (11)	scaffold_1:26052364-26052710(-) (11)	NA	NA	NA	AT3G08030.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.476.1.S1_s_at	A	A1TS	POPTR_0001s27110	POPTR_0001s27110 (11)	scaffold_1:26052197-26052637(-) (11)	NA	NA	NA	AT3G08030.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4760.1.S1_s_at	A	A1TS	POPTR_0008s09430	POPTR_0008s09430 (11)	scaffold_8:5841306-5841922(-) (11)	NA	Q7Z494	Nephrocystin-3	AT3G27960.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g125600.1	"kinesin light chain-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4762.1.S1_at	A	A1TS	POPTR_0018s04060	POPTR_0018s04060 (11)	scaffold_18:3476514-3478000(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os08g40880.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g133100.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4763.1.S1_at	A	A1TS	POPTR_0001s34070	POPTR_0001s34070 (9)	scaffold_1:32212747-32213703(+) (9)	NA	Q8HSW1	"Adenylate kinase, chloroplastic"	AT3G01820.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g02540.1	"adenylate kinase, putative, expressed"	Medtr7g120720.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0019205|""nucleobase, nucleoside, nucleotide kinase activity""||GO:0005524|ATP binding"	NA
Ptp.4765.1.S1_at	A	A1TS	POPTR_0001s39020	POPTR_0001s39020 (11)	scaffold_1:38268331-38268597(+) (11)	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4765.1.S1_s_at	A	A1TS	POPTR_0001s39020	POPTR_0001s39020 (11)	scaffold_1:38268589-38269501(+) (11)	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4766.1.S1_at	A	A1TS	POPTR_0016s06420	POPTR_0016s06420 (11)	scaffold_16:4316303-4317649(-) (11)	NA	NA	NA	AT5G06590.1	unknown protein; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g42840.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4767.1.S1_at	A	A1TS	POPTR_0001s23520	POPTR_0001s23520 (11)	scaffold_1:22914366-22914960(+) (11)	NA	Q86HW6	Probable serine/threonine-protein kinase DDB_G0276461	AT2G32850.2	Protein kinase superfamily protein 	LOC_Os02g37880.3	"cyclin G-associated kinase, putative, expressed"	Medtr8g115300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4768.1.S1_s_at	A	A1TS	POPTR_0011s07200	POPTR_0011s07200 (11)	scaffold_11:7963182-7964461(-) (11)	NA	C0LGK9	Probable LRR receptor-like serine/threonine-protein kinase At2g24230	AT5G45800.1	Leucine-rich repeat protein kinase family protein 	LOC_Os02g14480.1	"receptor-like kinase, putative, expressed"	Medtr4g134880.1	Tyrosine protein kinase; Ribosomal protein S2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4769.1.S1_at	A	A1TS	POPTR_0006s11650	POPTR_0006s11650 (11)	scaffold_6:8865818-8866928(-) (11)	NA	NA	NA	AT3G09980.1	Family of unknown function (DUF662)  	LOC_Os04g33450.2	expressed protein	Medtr7g126780.2	Protein of unknown function DUF662 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4769.1.S1_x_at	A	A1TS	POPTR_0006s11650	POPTR_0006s11650 (11)	scaffold_6:8865650-8866928(-) (11)	NA	NA	NA	AT3G09980.1	Family of unknown function (DUF662)  	LOC_Os04g33450.2	expressed protein	Medtr7g126780.2	Protein of unknown function DUF662 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4770.1.S1_at	A	A1TS	POPTR_0004s17790	POPTR_0004s17790 (9)	scaffold_4:17834695-17835925(-) (9)	NA	Q86W50	Putative methyltransferase METT10D	AT2G21070.3	methyltransferases 	LOC_Os02g02880.1	expressed protein	NA	NA	NA	GO:0008168|methyltransferase activity	NA
Ptp.4771.1.S1_at	A	A1TS	POPTR_0015s15760	POPTR_0015s15760 (11)	scaffold_15:14967365-14968642(+) (11)	NA	Q9SKC3	Probable E3 ubiquitin-protein ligase ARI9	AT4G19670.2	RING/U-box superfamily protein 	LOC_Os12g43560.1	"zinc finger, putative, expressed"	Medtr2g034440.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.4772.1.S1_s_at	A	A1TS	POPTR_0001s08130	POPTR_0001s08130 (11)	scaffold_1:6189600-6190213(-) (11)	NA	NA	NA	AT1G12420.1	ACT domain repeat 8 	LOC_Os08g02500.1	"ACT domain containing protein, putative"	Medtr8g106560.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
Ptp.4773.1.S1_s_at	A	A2TS	POPTR_0008s04690	POPTR_0010s22140 (10)//POPTR_0008s04690 (10)	scaffold_10:19160721-19160920(+) (10)//scaffold_8:2691876-2692075(-) (10)	NA	NA	NA	AT3G55060.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G39300.2); Has 61765 Blast hits to 33720 proteins in 2065 species: Archae - 846; Bacteria - 6964; Metazoa - 31967; Fungi - 5247; Plants - 3104; Viruses - 205; Other Eukaryotes - 13432 (source: NCBI BLink). 	LOC_Os07g48700.1	expressed protein	Medtr1g146390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4774.1.S1_at	A	A1TS	POPTR_0006s20730	POPTR_0006s20730 (9)	scaffold_6:19712296-19712331(-) (9)	NA	Q9M2F1	40S ribosomal protein S27-2	AT3G61110.1	ribosomal protein S27 	LOC_Os04g27860.1	"40S ribosomal protein S27, putative"	Medtr2g019110.1	Ribosomal protein S27E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4775.1.A1_at	A	A1TS	POPTR_0001s35290	POPTR_0001s35290 (11)	scaffold_1:33632409-33632876(+) (11)	NA	Q9FJV0	Mitogen-activated protein kinase kinase 6	AT5G40440.1	mitogen-activated protein kinase kinase 3 	LOC_Os06g27890.2	"STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g005140.1	Tyrosine protein kinase; Nuclear transport factor 2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4777.1.S1_at	A	A1TS	POPTR_0014s11770	POPTR_0014s11770 (10)	scaffold_14:8739498-8739933(-) (10)	NA	Q6TUG0	DnaJ homolog subfamily B member 11	AT3G62600.1	DNAJ heat shock family protein 	LOC_Os05g06440.1	"dnaJ homolog subfamily B member 11 precursor, putative, expressed"	Medtr7g132750.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.4778.1.S1_at	A	A1TS	POPTR_0009s15280	POPTR_0009s15280 (11)	scaffold_9:11863333-11863373(-) (11)	NA	A6TF98	Bifunctional polymyxin resistance protein ArnA	AT1G08200.1	UDP-D-apiose/UDP-D-xylose synthase 2 	LOC_Os01g73790.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g137650.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4778.1.S1_s_at	A	A1TS	POPTR_0009s15280	POPTR_0009s15280 (11)	scaffold_9:11863211-11863316(-) (11)	NA	A6TF98	Bifunctional polymyxin resistance protein ArnA	AT1G08200.1	UDP-D-apiose/UDP-D-xylose synthase 2 	LOC_Os01g73790.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g137650.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.4779.1.S1_s_at	A	A1TS	POPTR_0009s17030	POPTR_0009s17030 (11)	scaffold_9:12836287-12836501(-) (11)	NA	Q99JW2	Aminoacylase-1	AT4G38220.1	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046680.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.4780.1.S1_s_at	A	A1TS	POPTR_0003s06930	POPTR_0003s06930 (11)	scaffold_3:8490355-8490413(-) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.4781.1.S1_at	A	A1TS	POPTR_0019s00690	POPTR_0019s00690 (11)	scaffold_19:435225-435686(-) (11)	NA	Q9LT02	Putative cation-transporting ATPase	AT5G23630.1	phosphate deficiency response 2 	LOC_Os05g33390.1	"cation-transporting ATPase, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
Ptp.4782.1.S1_s_at	A	A2TS	POPTR_0008s01700	POPTR_0008s01800 (11)//POPTR_0008s01700 (11)	scaffold_8:822721-823430(+) (11)//scaffold_8:848287-848996(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os11g05690.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4784.1.S1_at	A	A1TS	POPTR_0003s18970	POPTR_0003s18970 (10)	scaffold_3:17847393-17847683(+) (10)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4788.1.S1_at	A	A1TS	POPTR_0001s09430	POPTR_0001s09430 (11)	scaffold_1:7188694-7190803(+) (11)	NA	NA	NA	AT4G23330.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2365 (InterPro:IPR019314). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4789.1.S1_s_at	A	A1TS	POPTR_0010s21350	POPTR_0010s21350 (11)	scaffold_10:18669027-18669272(-) (11)	NA	P09189	Heat shock cognate 70 kDa protein	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.479.2.A1_at	A	A1TS	POPTR_0015s07290	POPTR_0015s07290 (10)	scaffold_15:8434573-8434608(-) (10)	NA	Q9LF80	Putative glycosyltransferase 3	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g32750.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
Ptp.4791.2.S1_s_at	A	A1TS	POPTR_0009s07280	POPTR_0009s07280 (11)	scaffold_9:6835539-6836185(+) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os12g04020.1	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.1	Hydroxymethylglutaryl-coenzyme A lyase active site 	NA	GO:0003824|catalytic activity	NA
Ptp.4793.1.S1_at	A	A1TS	POPTR_0002s08300	POPTR_0002s08300 (11)	scaffold_2:5782063-5782535(-) (11)	NA	Q8VYX0	IAA-amino acid hydrolase ILR1-like 6	AT1G44350.1	IAA-leucine resistant (ILR)-like gene 6 	LOC_Os06g47620.1	"peptidase, putative, expressed"	Medtr3g100500.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.4794.2.S1_at	A	A1MS	POPTR_0006s10320	POPTR_0006s10320 (10)	scaffold_6:7728564-7728649(+) (10)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.4795.1.S1_s_at	A	A1TS	POPTR_0002s13070	POPTR_0002s13070 (11)	scaffold_2:9726278-9726690(+) (11)	NA	Q9SZA7	Probable disease resistance protein At4g33300	AT4G33300.2	ADR1-like 1 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr1g025080.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.4796.1.S1_at	A	A1TS	POPTR_0006s15630	POPTR_0006s15630 (11)	scaffold_6:13081487-13081573(-) (11)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4799.1.S1_s_at	A	A1TS	POPTR_0001s29510	POPTR_0001s29510 (11)	scaffold_1:28166055-28168121(+) (11)	NA	Q9M2Y6	Uncharacterized protein At3g49720	AT3G49720.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g05070.1	expressed protein	Medtr2g010600.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.48.1.S1_at	A	A1TS	POPTR_0026s00220	POPTR_0026s00220 (9)	scaffold_26:144063-145931(+) (9)	NA	NA	NA	AT4G15790.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). 	LOC_Os12g35620.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.480.1.A1_s_at	A	A1TS	POPTR_0006s10100	POPTR_0006s10100 (11)	scaffold_6:7515401-7516114(+) (11)	NA	Q9M028	LIMR family protein At5g01460	AT5G01460.1	LMBR1-like membrane protein 	LOC_Os06g03760.2	"LMBR1 integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4800.1.S1_at	A	A1TS	POPTR_0013s03870	POPTR_0013s03870 (9)	scaffold_13:2534703-2534884(+) (9)	NA	O24407	Auxin-responsive protein IAA16	AT3G04730.1	indoleacetic acid-induced protein 16 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.4801.1.A1_at	A	A1TS	POPTR_0002s16210	POPTR_0002s16210 (11)	scaffold_2:12113087-12113165(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.1	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4801.1.A1_s_at	A	A1TS	POPTR_0002s16210	POPTR_0002s16210 (11)	scaffold_2:12111861-12113082(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.1	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4802.1.S1_at	A	A1TS	POPTR_0014s03200	POPTR_0014s03200 (10)	scaffold_14:2561556-2561597(-) (10)	NA	Q9SX77	"Uncharacterized protein At1g47420, mitochondrial"	AT1G47420.1	succinate dehydrogenase 5 	LOC_Os04g34100.1	expressed protein	Medtr1g024840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4802.1.S1_s_at	A	A1TS	POPTR_0014s03200	POPTR_0014s03200 (11)	scaffold_14:2561598-2562494(-) (11)	NA	Q9SX77	"Uncharacterized protein At1g47420, mitochondrial"	AT1G47420.1	succinate dehydrogenase 5 	LOC_Os04g34100.1	expressed protein	Medtr1g024840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4803.1.S1_at	A	A1TS	POPTR_0009s12200	POPTR_0009s12200 (11)	scaffold_9:9983222-9984143(-) (11)	NA	P51820	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006545|glycine biosynthetic process||GO:0006231|dTMP biosynthetic process	GO:0004799|thymidylate synthase activity||GO:0004146|dihydrofolate reductase activity	NA
Ptp.4803.1.S1_s_at	A	A1TS	POPTR_0009s12200	POPTR_0009s12200 (11)	scaffold_9:9983003-9983852(-) (11)	NA	P51820	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006545|glycine biosynthetic process||GO:0006231|dTMP biosynthetic process	GO:0004799|thymidylate synthase activity||GO:0004146|dihydrofolate reductase activity	NA
Ptp.4804.1.A1_at	A	A1TS	POPTR_0006s02170	POPTR_0006s02170 (9)	scaffold_6:1423087-1424496(+) (9)	NA	Q53196	Uncharacterized aminotransferase y4uB	AT3G22200.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g10510.1	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.4806.1.S1_at	A	A1TS	POPTR_0008s16350	POPTR_0008s16350 (11)	scaffold_8:10953312-10958604(+) (11)	NA	NA	NA	AT5G52070.1	Agenet domain-containing protein 	LOC_Os05g04860.1	"agenet domain containing protein, putative, expressed"	Medtr4g032970.1	Agenet 	NA	GO:0003723|RNA binding	NA
Ptp.4806.2.S1_a_at	A	A1TS	POPTR_0008s16350	POPTR_0008s16350 (10)	scaffold_8:10952319-10953276(+) (10)	NA	NA	NA	AT5G52070.1	Agenet domain-containing protein 	LOC_Os05g04860.1	"agenet domain containing protein, putative, expressed"	Medtr4g032970.1	Agenet 	NA	GO:0003723|RNA binding	NA
Ptp.4807.1.S1_s_at	A	A1TS	POPTR_0010s17840	POPTR_0010s17840 (10)	scaffold_10:16284793-16286454(-) (11)	NA	Q9SAJ3	"ATP-dependent zinc metalloprotease FTSH 12, chloroplastic"	AT1G79560.1	FTSH protease 12 	NA	NA	Medtr8g065640.1	Peptidase M41; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4809.1.S1_s_at	A	A1TS	POPTR_0006s21990	POPTR_0006s21990 (11)	scaffold_6:21000953-21001063(-) (11)	NA	Q54GN8	Ribosome biogenesis protein NSA2 homolog	AT5G06360.1	Ribosomal protein S8e family protein 	LOC_Os07g47580.1	"ribosomal protein, putative, expressed"	NA	NA	NA	NA	GO:0005622|intracellular
Ptp.4810.1.A1_s_at	A	A1TS	POPTR_0003s17450	POPTR_0003s17450 (11)	scaffold_3:16781025-16781295(-) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4811.1.S1_at	A	A2TS	POPTR_0001s15170	POPTR_0003s08080 (9)//POPTR_0001s15170 (9)	scaffold_1:12003510-12004523(-) (9)//scaffold_3:9539604-9540436(+) (9)	NA	Q8W4H1	GATA transcription factor 26	AT4G17570.3	GATA transcription factor 26 	LOC_Os04g46020.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g013520.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.4812.1.S1_at	A	A1TS	POPTR_0005s27920	POPTR_0005s27920 (11)	scaffold_5:25365025-25365991(-) (11)	NA	Q41140	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha	AT1G76550.1	Phosphofructokinase family protein 	LOC_Os02g48360.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed"	Medtr1g039920.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4813.1.S1_s_at	A	A1TS	POPTR_0001s00260	POPTR_0001s00260 (11)	scaffold_1:131479-132229(-) (11)	NA	B0UV30	Transaldolase	AT1G12230.1	Aldolase superfamily protein 	LOC_Os08g05830.1	"transaldolase, putative, expressed"	Medtr8g106240.1	Transaldolase 	GO:0005975|carbohydrate metabolic process	NA	NA
Ptp.4814.1.S1_at	A	A1TS	POPTR_0006s01200	POPTR_0006s01200 (10)	scaffold_6:673252-673712(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4815.1.S1_s_at	A	A1TS	POPTR_0001s43940	POPTR_0001s43940 (11)	scaffold_1:44356237-44356517(+) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.4815.2.A1_at	A	A1TA	POPTR_0001s43940	POPTR_0001s43940 (9)	scaffold_1:44356155-44356314(-) (9)	POPTR_0011s13310 (6)	C4XGC2	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.4817.1.S1_a_at	A	A1TS	POPTR_0016s03070	POPTR_0016s03070 (11)	scaffold_16:1540866-1540916(+) (11)	NA	Q0JNR2	Cysteine proteinase inhibitor 12	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.4819.1.S1_s_at	A	A1TS	POPTR_0006s21050	POPTR_0006s21050 (11)	scaffold_6:20159058-20162016(-) (11)	NA	Q8LB33	F-box protein At3g58530	AT3G58530.1	RNI-like superfamily protein 	LOC_Os02g17990.2	"Leucine Rich Repeat family protein, expressed"	Medtr2g026110.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.4822.1.S1_s_at	A	A1TS	POPTR_0017s01240	POPTR_0017s01240 (11)	scaffold_17:870302-871046(+) (11)	NA	Q01332	Beta-carotene hydroxylase	AT4G25700.1	beta-hydroxylase 1 	LOC_Os03g03370.1	"fatty acid hydroxylase, putative, expressed"	Medtr1g126460.2	Carotene hydroxylase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
Ptp.4823.1.S1_at	A	A1TS	POPTR_0011s12700	POPTR_0011s12700 (11)	scaffold_11:15402688-15402903(-) (11)	NA	O02414	"Dynein light chain LC6, flagellar outer arm"	AT4G27360.1	Dynein light chain type 1 family protein 	LOC_Os01g55510.1	"dynein light chain type 1 domain containing protein, expressed"	Medtr6g099400.1	"Dynein light chain, type 1 "	GO:0007017|microtubule-based process	GO:0003777|microtubule motor activity	GO:0005875|microtubule associated complex
Ptp.4824.1.S1_at	A	A1TS	POPTR_0013s13190	POPTR_0013s13190 (11)	scaffold_13:13741924-13743447(+) (11)	NA	B8E2G7	30S ribosomal protein S16	AT4G34620.1	small subunit ribosomal protein 16 	LOC_Os09g32274.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4825.1.S1_at	A	A1TS	POPTR_0002s08920	POPTR_0002s08920 (10)	scaffold_2:6292785-6293341(-) (10)	NA	Q5Z676	Probable calcium-binding protein CML29	AT1G24620.1	EF hand calcium-binding protein family 	LOC_Os06g47640.1	"OsCML29 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g027220.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4827.1.S1_a_at	A	A1TS	POPTR_0005s24360	POPTR_0005s24360 (11)	scaffold_5:22936934-22937163(+) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr2g088370.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4828.1.S1_at	A	A1TS	POPTR_0007s10980	POPTR_0007s10980 (10)	scaffold_7:11220113-11220969(+) (10)	NA	O81360	"Zeaxanthin epoxidase, chloroplastic"	AT5G67030.1	zeaxanthin epoxidase (ZEP) (ABA1) 	LOC_Os04g37619.1	"zeaxanthin epoxidase, chloroplast precursor, putative, expressed"	CU571152_22.1	Forkhead-associated CU571152.5 100554-94827 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4829.1.S1_at	A	A1TS	POPTR_0009s04650	POPTR_0009s04650 (11)	scaffold_9:4938542-4940082(-) (11)	NA	P32811	"Alpha-glucan phosphorylase, H isozyme"	AT3G46970.1	alpha-glucan phosphorylase 2 	LOC_Os01g63270.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr2g017970.1	"Glycosyl transferase, family 35; Amino acid-binding ACT "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
Ptp.4831.1.S1_s_at	A	A1TS	POPTR_0002s20390	POPTR_0002s20390 (11)	scaffold_2:16449348-16449587(+) (11)	NA	P34914	Epoxide hydrolase 2	AT4G02340.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g19150.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g138740.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4832.2.A1_s_at	A	A1TS	POPTR_0006s09350	POPTR_0006s09350 (11)	scaffold_6:6876758-6877476(+) (11)	NA	NA	NA	AT5G02020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59080.1); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4833.1.S1_at	A	A2TS	POPTR_0006s05150	POPTR_0006s05160 (11)//POPTR_0006s05150 (11)	scaffold_6:3599825-3600188(-) (11)//scaffold_6:3604212-3604575(-) (11)	NA	P72749	GTP-binding protein TypA/BipA homolog	AT5G13650.1	elongation factor family protein 	LOC_Os02g18450.1	"GTP-binding protein typA/bipA, putative, expressed"	Medtr4g109200.1	"Elongation factor G, III and V "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4836.1.S1_at	A	A1TS	POPTR_0013s14370	POPTR_0013s14370 (11)	scaffold_13:14589951-14590574(+) (11)	NA	P59015	Vacuolar protein sorting-associated protein 18 homolog	AT1G12470.1	zinc ion binding 	LOC_Os08g08060.1	"vacuolar protein sorting-associated protein 18, putative, expressed"	Medtr5g026230.1	Pep3/Vps18/deep orange 	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	NA
Ptp.4839.1.S1_s_at	A	A1TS	POPTR_0019s11300	POPTR_0019s11300 (11)	scaffold_19:12635325-12636731(-) (11)	NA	NA	NA	AT1G71950.1	"Proteinase inhibitor, propeptide "	LOC_Os05g35740.1	"subtilisin N-terminal Region family protein, expressed"	Medtr1g068620.1	"Proteinase inhibitor, propeptide "	GO:0043086|negative regulation of catalytic activity	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.484.1.S1_at	A	A1TS	POPTR_0006s00790	POPTR_0006s00790 (9)	scaffold_6:429186-429219(-) (9)	NA	NA	NA	AT5G50740.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g14870.1	"heavy metal-associated domain containing protein, expressed"	Medtr3g150810.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.4842.1.S1_at	A	A1TS	POPTR_0005s22470	POPTR_0005s22470 (11)	scaffold_5:21381010-21381564(-) (11)	NA	NA	NA	AT1G06510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). 	LOC_Os01g50120.2	expressed protein	Medtr5g098730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4843.1.A1_at	A	A1TS	POPTR_0012s07640	POPTR_0012s07640 (11)	scaffold_12:8550059-8550221(-) (11)	NA	NA	NA	AT3G48080.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr3g111260.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.4845.1.S1_at	A	A1TS	POPTR_0001s31910	POPTR_0001s31910 (11)	scaffold_1:30294457-30294689(-) (11)	NA	NA	NA	AT5G64260.1	EXORDIUM like 2 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g120640.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4845.1.S1_x_at	A	A1TS	POPTR_0001s31910	POPTR_0001s31910 (11)	scaffold_1:30294428-30294747(-) (11)	NA	NA	NA	AT5G64260.1	EXORDIUM like 2 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g120640.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4847.1.S1_at	A	A1TS	POPTR_0014s09280	POPTR_0014s09280 (11)	scaffold_14:6881685-6881760(-) (11)	NA	Q84MC7	Abscisic acid receptor PYL9	AT1G01360.1	regulatory component of ABA receptor 1 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4847.1.S1_s_at	A	A1TS	POPTR_0014s09280	POPTR_0014s09280 (11)	scaffold_14:6881831-6881983(-) (11)	NA	Q84MC7	Abscisic acid receptor PYL9	AT1G01360.1	regulatory component of ABA receptor 1 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4847.2.S1_s_at	A	A1TS	POPTR_0014s09280	POPTR_0014s09280 (11)	scaffold_14:6882258-6883566(-) (11)	NA	Q84MC7	Abscisic acid receptor PYL9	AT1G01360.1	regulatory component of ABA receptor 1 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4848.1.S1_s_at	A	A1TS	POPTR_0008s14480	POPTR_0008s14480 (9)	scaffold_8:9611500-9611534(+) (9)	NA	Q7NML9	ATP-dependent Clp protease adapter protein ClpS	AT1G68660.1	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 	LOC_Os01g61700.1	ATP-dependent Clp protease adaptor protein ClpS containing protein	NA	NA	GO:0030163|protein catabolic process||GO:0009057|macromolecule catabolic process	NA	NA
Ptp.4849.1.S1_s_at	A	A1TS	POPTR_0002s06490	POPTR_0002s06490 (11)	scaffold_2:4341962-4342371(+) (11)	NA	Q9SQI2	Protein GIGANTEA	AT1G22770.1	gigantea protein (GI) 	LOC_Os01g08700.6	"GIGANTEA, putative, expressed"	Medtr1g124650.2	"Protein GIGANTEA, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.485.1.S1_s_at	A	A1TS	POPTR_0008s14960	POPTR_0008s14960 (11)	scaffold_8:9972737-9974300(+) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT3G05990.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g08610.1	"leucine-rich repeat family protein, putative, expressed"	Medtr1g132820.1	"Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, related "	NA	GO:0005515|protein binding	NA
Ptp.4850.1.S1_s_at	A	A1TS	POPTR_0010s20760	POPTR_0010s20760 (11)	scaffold_10:18227218-18227855(+) (11)	NA	NA	NA	AT3G11420.1	Protein of unknown function (DUF604) 	LOC_Os03g16334.1	"fringe-related protein, putative, expressed"	Medtr7g088020.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4852.1.A1_at	A	A1MS	POPTR_0015s08340	POPTR_0015s08340 (11)	scaffold_15:9590071-9590262(-) (11)	NA	Q8W485	"Uncharacterized protein At5g50100, mitochondrial"	AT5G50100.1	Putative thiol-disulphide oxidoreductase DCC 	LOC_Os04g57310.1	"thiol-disulphide oxidoreductase DCC, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4852.1.A1_s_at	A	A1TS	POPTR_0015s08340	POPTR_0015s08340 (11)	scaffold_15:9590323-9592181(-) (11)	NA	Q8W485	"Uncharacterized protein At5g50100, mitochondrial"	AT5G50100.1	Putative thiol-disulphide oxidoreductase DCC 	LOC_Os04g57310.1	"thiol-disulphide oxidoreductase DCC, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4853.1.S1_at	A	A1TS	POPTR_0009s13970	POPTR_0009s13970 (11)	scaffold_9:11045666-11048047(-) (11)	NA	NA	NA	AT2G20920.1	Protein of unknown function (DUF3353) 	LOC_Os03g04440.1	expressed protein	Medtr8g115580.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4856.1.S1_at	A	A1TS	POPTR_0014s15860	POPTR_0014s15860 (9)	scaffold_14:11955343-11956289(+) (9)	NA	O94580	Ubiquitin and WLM domain-containing protein C1442.07c	AT5G35690.1	"CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os08g39150.1	expressed protein	Medtr3g106470.1	PUG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4857.2.S1_s_at	A	A1TS	POPTR_0018s01700	POPTR_0018s01700 (11)	scaffold_18:1556175-1557184(+) (11)	NA	NA	NA	AT5G25360.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). 	LOC_Os02g10720.1	expressed protein	Medtr4g005450.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4859.1.S1_at	A	A1MS	POPTR_0007s10680	POPTR_0007s10680 (9)	scaffold_7:10735767-10735981(+) (9)	NA	Q8C2P3	tRNA-dihydrouridine synthase 1-like	AT5G67220.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os06g49870.1	"tRNA-dihydrouridine synthase, putative, expressed"	Medtr8g078600.1	"Dihydrouridine synthase, DuS "	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity	NA
Ptp.4859.2.A1_s_at	A	A1TS	POPTR_0007s10680	POPTR_0007s10680 (11)	scaffold_7:10736781-10737138(+) (11)	NA	Q8C2P3	tRNA-dihydrouridine synthase 1-like	AT5G67220.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os06g49870.1	"tRNA-dihydrouridine synthase, putative, expressed"	Medtr8g078600.1	"Dihydrouridine synthase, DuS "	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity	NA
Ptp.4860.1.S1_s_at	A	A2TS	POPTR_0012s07720	POPTR_0012s07720 (11)//POPTR_0015s08180 (11)	scaffold_12:8626938-8627856(-) (11)//scaffold_15:9439798-9440676(-) (11)	NA	Q86HG0	Mannose-1-phosphate guanyltransferase alpha	AT1G74910.2	ADP-glucose pyrophosphorylase family protein 	LOC_Os03g11050.1	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr6g009470.1	Bacterial transferase hexapeptide repeat 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.4861.1.S1_at	A	A1TS	POPTR_0009s13180	POPTR_0009s13180 (11)	scaffold_9:10559658-10560046(+) (11)	NA	NA	NA	AT2G21180.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g14570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4862.1.S1_s_at	A	A1TS	POPTR_0004s21400	POPTR_0004s21400 (11)	scaffold_4:20545407-20546290(+) (11)	NA	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.1	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4863.1.S1_s_at	A	A1TS	POPTR_0013s07050	POPTR_0013s07050 (11)	scaffold_13:5754946-5755267(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os10g17260.1	"cytochrome P450, putative, expressed"	Medtr3g037120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4863.2.A1_at	A	A1TA	POPTR_0013s07050	POPTR_0013s07050 (11)	scaffold_13:5755126-5755533(+) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os10g17260.1	"cytochrome P450, putative, expressed"	Medtr3g037120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4864.1.S1_at	A	A1TS	POPTR_0003s08420	POPTR_0003s08420 (11)	scaffold_3:9841219-9842213(+) (11)	NA	O04979	"Lon protease homolog 2, peroxisomal"	AT5G47040.1	lon protease 2 	LOC_Os09g36300.1	"OsLonP4 - Putative Lon protease homologue, expressed"	Medtr5g014000.1	"AAA ATPase, central region "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004176|ATP-dependent peptidase activity||GO:0004252|serine-type endopeptidase activity||GO:0005524|ATP binding	NA
Ptp.4865.1.A1_s_at	A	A1TS	POPTR_0011s11390	POPTR_0011s11390 (11)	scaffold_11:14141282-14141379(-) (11)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14420.2	Aldolase-type TIM barrel family protein 	LOC_Os03g57220.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4865.1.A1_x_at	A	A1TS	POPTR_0011s11390	POPTR_0011s11390 (11)	scaffold_11:14141235-14142341(-) (11)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14420.2	Aldolase-type TIM barrel family protein 	LOC_Os03g57220.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4866.1.S1_at	A	A1TS	POPTR_0017s04520	POPTR_0017s04520 (11)	scaffold_17:3475594-3476723(-) (11)	NA	P98205	Putative phospholipid-transporting ATPase 2	AT5G44240.2	aminophospholipid ATPase 2 	LOC_Os11g25980.1	"phospholipid-transporting ATPase 2, putative, expressed"	Medtr6g006450.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4867.1.A1_s_at	A	A1TS	POPTR_0001s07050	POPTR_0001s07050 (11)	scaffold_1:5364937-5365416(-) (11)	NA	Q2YDP3	Dr1-associated corepressor	AT3G12480.1	"nuclear factor Y, subunit C11 "	LOC_Os05g41450.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g044480.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.4869.1.S1_s_at	A	A1TS	POPTR_0016s04550	POPTR_0016s04550 (11)	scaffold_16:2674219-2674516(-) (11)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4869.2.S1_s_at	A	A1TS	POPTR_0016s04550	POPTR_0016s04550 (10)	scaffold_16:2674536-2674772(-) (10)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4871.1.S1_at	A	A1TS	POPTR_0001s19340	POPTR_0001s19340 (9)	scaffold_1:16968531-16969205(-) (9)	NA	NA	NA	AT1G52565.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g126380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4875.1.A1_a_at	A	A1TS	POPTR_0002s24890	POPTR_0002s24890 (11)	scaffold_2:22113494-22114639(+) (11)	NA	P43294	Serine/threonine-protein kinase MHK	AT4G13020.4	Protein kinase superfamily protein 	LOC_Os03g63020.1	"protein kinase domain containing protein, expressed"	Medtr8g012830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4875.2.A1_s_at	A	A1TS	POPTR_0002s24890	POPTR_0002s24890 (11)	scaffold_2:22113313-22114342(+) (11)	NA	P43294	Serine/threonine-protein kinase MHK	AT4G13020.4	Protein kinase superfamily protein 	LOC_Os03g63020.1	"protein kinase domain containing protein, expressed"	Medtr8g012830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4876.1.S1_s_at	A	A1TS	POPTR_0011s16770	POPTR_0011s16770 (10)	scaffold_11:18541763-18542380(-) (10)	NA	P38166	Protein transport protein SFT2	AT5G56020.1	Got1/Sft2-like vescicle transport protein family 	LOC_Os06g19620.1	"SFT2, putative, expressed"	Medtr3g080130.1	SFT2-like 	GO:0016192|vesicle-mediated transport	NA	NA
Ptp.4881.1.S1_at	A	A1TS	POPTR_0006s01360	POPTR_0006s01360 (9)	scaffold_6:789452-789757(-) (9)	NA	Q9SU30	F-box protein CPR30	AT4G12560.2	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.2	"OsFBX323 - F-box domain containing protein, expressed"	Medtr8g147870.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4882.1.S1_s_at	A	A9TS	POPTR_0010s06930	POPTR_0010s06930 (11)//POPTR_0010s07010 (11)//POPTR_0010s06960 (11)//POPTR_0010s06970 (11)//POPTR_0010s06980 (11)//POPTR_0010s06940 (11)//POPTR_0010s06950 (11)//POPTR_0010s07000 (11)//POPTR_0010s06990 (11)	scaffold_10:8159088-8159268(-) (11)//scaffold_10:8164054-8164234(-) (11)//scaffold_10:8176902-8177082(-) (11)//scaffold_10:8184593-8184773(-) (11)//scaffold_10:8203446-8203626(-) (11)//scaffold_10:8212021-8212201(-) (11)//scaffold_10:8229644-8229824(-) (11)//scaffold_10:8236959-8237139(-) (11)//scaffold_10:8257612-8257792(-) (11)	NA	O80763	Probable nucleoredoxin 1	AT1G60420.1	DC1 domain-containing protein 	LOC_Os03g29190.2	"PDI, putative, expressed"	Medtr3g133070.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin domain 2; C1-like; Thioredoxin fold "	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.4883.1.S1_at	A	A1TS	POPTR_0009s05090	POPTR_0009s05090 (10)	scaffold_9:5260456-5261457(+) (10)	NA	NA	NA	AT5G58720.1	smr (Small MutS Related) domain-containing protein 	LOC_Os01g12530.1	"smr domain containing protein, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4886.1.S1_at	A	A1TS	POPTR_0015s11970	POPTR_0015s11970 (11)	scaffold_15:12431130-12433452(-) (11)	NA	NA	NA	AT5G51040.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF339 (InterPro:IPR005631); Has 532 Blast hits to 532 proteins in 207 species: Archae - 0; Bacteria - 285; Metazoa - 16; Fungi - 41; Plants - 40; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). 	LOC_Os11g32480.1	"TPR repeat region family protein, expressed"	Medtr3g151450.1	Protein of unknown function DUF339 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4887.1.A1_a_at	A	A1TS	POPTR_0008s16710	POPTR_0008s16710 (11)	scaffold_8:11233169-11234153(+) (11)	NA	P0A9T5	Protein tas	AT1G04420.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os03g41510.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr1g043110.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4889.1.S1_s_at	A	A1TS	POPTR_0014s12520	POPTR_0014s12520 (11)	scaffold_14:9222376-9222524(-) (11)	NA	Q43582	Probable U6 snRNA-associated Sm-like protein LSm4	AT5G27720.1	Small nuclear ribonucleoprotein family protein 	LOC_Os01g15310.1	"LSM domain containing protein, expressed"	Medtr7g130480.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4891.2.A1_at	A	A1TS	POPTR_0002s15240	POPTR_0002s15240 (10)	scaffold_2:11382503-11383473(+) (10)	NA	B6YWH0	Glyoxylate reductase	AT2G45630.2	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01650.1	erythronate-4-phosphate dehydrogenase domain containing protein	Medtr4g009370.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.4892.1.S1_s_at	A	A1TS	POPTR_0006s22010	POPTR_0006s22010 (11)	scaffold_6:21030815-21030927(-) (11)	NA	Q9CAF2	"Nudix hydrolase 26, chloroplastic"	AT3G10620.1	nudix hydrolase homolog 26 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4893.1.S1_s_at	A	A1TS	POPTR_0015s07370	POPTR_0015s07370 (11)	scaffold_15:8537893-8540829(-) (11)	NA	Q9D853	Methyltransferase-like protein 10	AT1G66680.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g03090.1	"methyltransferase, putative, expressed"	Medtr7g094110.1	Methyltransferase type 12 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.4895.1.S1_x_at	A	A1TS	POPTR_0004s01950	POPTR_0004s01950 (11)	scaffold_4:1226968-1227516(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.4896.1.S1_a_at	A	A1TS	POPTR_0014s11090	POPTR_0014s11090 (11)	scaffold_14:8248842-8249298(-) (11)	NA	Q3EAF9	Probable protein phosphatase 2C 49	AT3G62260.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr1g106080.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4897.1.S1_at	A	A1TS	POPTR_0015s11640	POPTR_0015s11640 (10)	scaffold_15:12188642-12189095(-) (10)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
Ptp.4898.3.S1_at	A	A1TS	POPTR_0003s08360	POPTR_0003s08360 (9)	scaffold_3:9737486-9737528(-) (9)	NA	O23553	"Beta-amylase 3, chloroplastic"	AT4G17090.1	chloroplast beta-amylase 	LOC_Os10g41550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.4899.1.S1_s_at	A	A1TS	POPTR_0002s26160	POPTR_0002s26160 (11)	scaffold_2:23117673-23118396(-) (11)	NA	NA	NA	AT1G75250.2	RAD-like 6 	LOC_Os05g50340.1	"MYB family transcription factor, putative, expressed"	Medtr8g093090.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.49.1.S1_at	A	A1TS	POPTR_0004s20220	POPTR_0004s20220 (11)	scaffold_4:19841200-19841646(+) (11)	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.490.1.A1_s_at	A	A1TS	POPTR_0001s33990	POPTR_0001s33990 (11)	scaffold_1:32138374-32138449(-) (11)	NA	Q9LK32	Uncharacterized protein At3g27210	AT3G01860.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g69100.1	expressed protein	Medtr6g025370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4900.1.S1_s_at	A	A1TS	POPTR_0014s01590	POPTR_0014s01590 (11)	scaffold_14:1494842-1495450(-) (11)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.4901.1.S1_s_at	A	A1TS	POPTR_0007s04300	POPTR_0007s04300 (9)	scaffold_7:2601953-2602696(+) (9)	NA	NA	NA	AT1G76980.1	BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). 	NA	NA	Medtr3g143160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4902.1.S1_at	A	A1TS	POPTR_0006s25300	POPTR_0006s25300 (11)	scaffold_6:23721615-23722154(-) (11)	NA	NA	NA	AT4G32860.1	unknown protein; Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g36070.1	expressed protein	Medtr8g015610.1	"Avr9/Cf-9 rapidly elicited protein 146, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4902.2.S1_at	A	A1TS	POPTR_0005s02080	POPTR_0005s02080 (10)	scaffold_5:1347257-1348767(+) (10)	NA	Q84J70	Protein DEHYDRATION-INDUCED 19 homolog 3	AT3G05700.1	Drought-responsive family protein 	LOC_Os05g28980.1	"drought induced 19 protein, putative, expressed"	Medtr7g138070.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4904.1.S1_s_at	A	A1TS	POPTR_0001s12970	POPTR_0001s12970 (11)	scaffold_1:10053891-10054183(-) (11)	NA	O23627	"Glycyl-tRNA synthetase 1, mitochondrial"	AT1G29880.1	glycyl-tRNA synthetase / glycine--tRNA ligase 	LOC_Os08g42560.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr3g137760.1	"Glycyl-tRNA synthetase 1, mitochondrial precursor, putative "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.4905.1.A1_at	A	A1TA	POPTR_0006s14140	POPTR_0006s14140 (11)	scaffold_6:11449132-11449228(-) (11)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4905.1.A1_s_at	A	A1TS	POPTR_0001s10990	POPTR_0001s10990 (11)	scaffold_1:8520978-8521668(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4905.2.S1_s_at	A	A1TS	POPTR_0006s14140	POPTR_0006s14140 (11)	scaffold_6:11449134-11449370(+) (11)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4908.1.S1_at	A	A1TS	POPTR_0017s14520	POPTR_0017s14520 (10)	scaffold_17:14538509-14538744(-) (10)	NA	Q8L7E5	WPP domain-interacting tail-anchored protein 1	AT5G11390.1	WPP domain-interacting protein 1 	LOC_Os05g15140.1	expressed protein	Medtr7g015720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4909.2.S1_s_at	A	A1TS	POPTR_0009s12620	POPTR_0009s12620 (9)	scaffold_9:10273292-10273502(+) (9)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os01g54210.1	"GATA zinc finger domain containing protein, expressed"	Medtr4g097100.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.4910.1.S1_s_at	A	A1TS	POPTR_0001s24570	POPTR_0001s24570 (11)	scaffold_1:23829215-23829622(+) (11)	NA	Q94B55	Putative E3 ubiquitin-protein ligase XBAT31	AT2G28840.1	XB3 ortholog 1 in Arabidopsis thaliana 	LOC_Os05g02130.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	AC146807_5.2	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4913.1.A1_at	A	A1MS	POPTR_0014s08410	POPTR_0014s08410 (11)	scaffold_14:6255756-6256160(-) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT4G00300.2	fringe-related protein 	LOC_Os03g03290.1	"receptor-like protein kinase At3g46290 precursor, putative, expressed"	Medtr7g087930.1	"Probable receptor-like protein kinase At3g46290 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4914.1.S1_at	A	A1TS	POPTR_0001s34390	POPTR_0001s34390 (11)	scaffold_1:32545495-32545685(+) (11)	NA	NA	NA	AT5G46410.2	SCP1-like small phosphatase 4 	NA	NA	Medtr2g056340.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4915.1.S1_s_at	A	A1TS	POPTR_0006s11410	POPTR_0006s11410 (11)	scaffold_6:8639202-8639664(-) (11)	NA	Q9ZVI6	Protein LURP-one-related 8	AT2G38640.1	Protein of unknown function (DUF567) 	LOC_Os11g02750.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126520.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4916.2.S1_s_at	A	A1TS	POPTR_0013s00610	POPTR_0013s00610 (11)	scaffold_13:292787-293675(-) (11)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4917.1.S1_at	A	A1TS	POPTR_0001s10390	POPTR_0001s10390 (10)	scaffold_1:8072779-8073032(+) (10)	NA	NA	NA	AT3G61670.1	Protein of unknown function (DUF3133) 	LOC_Os02g15820.1	"extra-large G-protein-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4919.1.S1_at	A	A1TS	POPTR_0002s06980	POPTR_0002s06980 (9)	scaffold_2:4726955-4727242(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
Ptp.492.1.S1_s_at	A	A1TS	POPTR_0015s14830	POPTR_0015s14830 (11)	scaffold_15:14295814-14296183(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.4920.1.S1_s_at	A	A1TS	POPTR_0019s14190	POPTR_0019s14190 (11)	scaffold_19:14940522-14940668(+) (11)	POPTR_0013s14650 (8)	NA	NA	AT1G11360.4	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os07g36600.2	"universal stress protein domain containing protein, putative, expressed"	Medtr2g103170.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.4921.1.S1_at	A	A1TS	POPTR_0014s07850	POPTR_0014s07850 (11)	scaffold_14:5846421-5848570(+) (11)	NA	NA	NA	AT4G00530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01725.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4923.1.S1_s_at	A	A1TS	POPTR_0001s30760	POPTR_0001s30760 (11)	scaffold_1:29236831-29237166(+) (11)	NA	NA	NA	AT2G15270.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1168 (InterPro:IPR009548); Has 1930 Blast hits to 1364 proteins in 219 species: Archae - 0; Bacteria - 44; Metazoa - 762; Fungi - 280; Plants - 96; Viruses - 3; Other Eukaryotes - 745 (source: NCBI BLink). 	LOC_Os09g01690.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4924.1.S1_s_at	A	A1TS	POPTR_0006s06520	POPTR_0006s06520 (11)	scaffold_6:4718552-4719044(+) (11)	NA	Q9CXF4	TBC1 domain family member 15	AT5G52580.1	RabGAP/TBC domain-containing protein 	LOC_Os02g48000.2	"TBC domain containing protein, expressed"	Medtr8g121210.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.4925.1.S1_s_at	A	A1TS	POPTR_0003s07020	POPTR_0003s07020 (11)	scaffold_3:8622852-8623672(-) (11)	NA	P52894	Alanine aminotransferase 2	AT1G72330.1	alanine aminotransferase 2 	LOC_Os07g42600.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr8g026620.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.4926.1.S1_s_at	A	A1TS	POPTR_0009s12420	POPTR_0009s12420 (9)	scaffold_9:10140821-10141086(+) (9)	NA	P43296	Cysteine proteinase RD19a	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.4927.1.S1_at	A	A1MS	POPTR_0007s12780	POPTR_0007s12780 (11)	scaffold_7:13040747-13041141(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g020000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4928.1.S1_at	A	A2TS	POPTR_0009s15850	POPTR_0009s15850 (11)//POPTR_0009s15870 (11)	scaffold_9:12177339-12177834(+) (11)//scaffold_9:12186938-12187435(+) (11)	NA	NA	NA	AT2G21530.1	SMAD/FHA domain-containing protein  	LOC_Os12g03070.1	"FHA domain containing protein, putative, expressed"	Medtr3g111120.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.493.1.S1_s_at	A	A2TS	POPTR_0004s21750	POPTR_0009s17000 (11)//POPTR_0004s21750 (11)	scaffold_4:20775285-20777186(-) (11)//scaffold_9:12822979-12824433(-) (11)	NA	Q949P3	Uncharacterized protein At2g17340	AT4G35360.1	Uncharacterised conserved protein (UCP030210) 	LOC_Os06g21980.1	"pantothenate kinase 4, putative, expressed"	Medtr7g034760.1	Protein of unknown function DUF89 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4930.1.S1_s_at	A	A1TS	POPTR_0005s21780	POPTR_0005s21780 (11)	scaffold_5:20872790-20873899(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4932.1.S1_s_at	A	A1TS	POPTR_0014s07290	POPTR_0014s07290 (11)	scaffold_14:5502472-5503556(-) (11)	NA	Q9SN28	RING-H2 finger protein ATL7	AT4G10150.1	RING/U-box superfamily protein 	LOC_Os02g45390.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4933.1.S1_at	A	A1TS	POPTR_0010s10770	POPTR_0010s10770 (10)	scaffold_10:11193735-11194306(-) (10)	NA	NA	NA	AT3G11920.1	glutaredoxin-related 	LOC_Os10g34170.1	"glutaredoxin domain containing protein, putative, expressed"	AC233100_25.1	Protein of unknown function DUF547 AC233100.6 89976-92470 E EGN_Mt090430 200	GO:0007242|intracellular signaling cascade||GO:0045454|cell redox homeostasis||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.4934.1.S1_at	A	A1TS	POPTR_0001s27210	POPTR_0001s27210 (9)	scaffold_1:26121815-26121974(+) (9)	NA	Q8CWK7	tRNA-dihydrouridine synthase A	AT3G63510.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os04g20990.1	"tRNA-dihydrouridine synthase, putative, expressed"	Medtr3g029890.1	"Dihydrouridine synthase, DuS "	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity	NA
Ptp.4936.1.S1_s_at	A	A1TS	POPTR_0001s33850	POPTR_0001s33850 (11)	scaffold_1:32008578-32009719(+) (11)	NA	Q9S850	Sulfite oxidase	AT3G01910.1	sulfite oxidase 	LOC_Os08g41830.1	"sulfite oxidase, putative, expressed"	Medtr3g098350.1	Mo-co oxidoreductase dimerisation domain 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0030151|molybdenum ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.494.1.S1_s_at	A	A1TS	POPTR_0012s04140	POPTR_0012s04140 (11)	scaffold_12:3353459-3354088(+) (11)	NA	Q9LE73	Nudix hydrolase 4	AT1G18300.1	nudix hydrolase homolog 4 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr6g080940.2	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4940.1.S1_s_at	A	A1TA	POPTR_0014s01550	POPTR_0014s01550 (10)	scaffold_14:1474952-1475163(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4942.1.S1_a_at	A	A1TS	POPTR_0008s22170	POPTR_0008s22170 (11)	scaffold_8:16541548-16541643(-) (11)	NA	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4942.2.S1_at	A	A1TS	POPTR_0008s22170	POPTR_0008s22170 (11)	scaffold_8:16541704-16542012(-) (11)	POPTR_0008s22210 (8)	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4943.1.S1_at	A	A1TS	POPTR_0005s26340	POPTR_0005s26340 (11)	scaffold_5:24411815-24411863(+) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4943.1.S1_s_at	A	A1TS	POPTR_0005s26340	POPTR_0005s26340 (11)	scaffold_5:24411882-24412105(+) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4944.1.S1_s_at	A	A1TS	POPTR_0003s01050	POPTR_0003s01050 (11)	scaffold_3:924978-926813(-) (11)	NA	O35900	U6 snRNA-associated Sm-like protein LSm2	AT1G03330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g05850.1	"LSM domain containing protein, expressed"	Medtr7g127450.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4945.1.A1_at	A	A1TS	POPTR_0001s09200	POPTR_0001s09200 (11)	scaffold_1:7039032-7039336(-) (11)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.4946.1.S1_at	A	A1TS	POPTR_0001s38300	POPTR_0001s38300 (11)	scaffold_1:37389025-37389492(-) (11)	NA	Q40521	Ras-related protein Rab11B	AT5G60860.1	RAB GTPase homolog A1F 	LOC_Os05g48980.1	"ras-related protein, putative, expressed"	Medtr4g109180.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4947.1.S1_s_at	A	A1TS	POPTR_0004s21730	POPTR_0004s21730 (11)	scaffold_4:20767837-20768083(-) (11)	NA	NA	NA	AT4G35320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g40060.1	expressed protein	Medtr5g106850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4951.1.S1_s_at	A	A1TS	POPTR_0001s27680	POPTR_0001s27680 (11)	scaffold_1:26540830-26541379(+) (11)	NA	Q66GR3	Transcription factor bHLH130	AT2G42280.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr3g030690.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.4952.1.S1_at	A	A1TS	POPTR_0010s04790	POPTR_0010s04790 (11)	scaffold_10:5952782-5953102(-) (11)	NA	P52901	"Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial"	AT1G59900.1	pyruvate dehydrogenase complex E1 alpha subunit 	LOC_Os02g50620.1	"dehydrogenase E1 component domain containing protein, expressed"	Medtr8g074090.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
Ptp.4953.1.S1_s_at	A	A2TS	POPTR_0002s12780	POPTR_0515s00230 (11)//POPTR_0002s12780 (11)	scaffold_2:9523034-9524111(+) (11)//scaffold_515:8807-9918(-) (11)	NA	NA	NA	AT5G42890.1	sterol carrier protein 2 	LOC_Os02g52720.1	"peroxisomal multifunctional enzyme type 2, putative"	Medtr1g024360.1	Short-chain dehydrogenase/reductase SDR; Sterol-binding 	NA	NA	NA
Ptp.4956.1.A1_at	A	A1TS	POPTR_0002s08900	POPTR_0002s08900 (11)	scaffold_2:6285498-6286550(-) (11)	NA	P42732	"30S ribosomal protein S13, chloroplastic"	AT5G14320.1	Ribosomal protein S13/S18 family 	LOC_Os03g49710.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr3g098290.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.4956.1.A1_x_at	A	A1TS	POPTR_0002s08900	POPTR_0002s08900 (11)	scaffold_2:6285498-6286615(-) (11)	NA	P42732	"30S ribosomal protein S13, chloroplastic"	AT5G14320.1	Ribosomal protein S13/S18 family 	LOC_Os03g49710.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr3g098290.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.4957.1.S1_at	A	A1TS	POPTR_0008s12500	POPTR_0008s12500 (9)	scaffold_8:8099321-8099421(+) (9)	NA	Q9BVG9	Phosphatidylserine synthase 2	AT1G15110.1	phosphatidyl serine synthase family protein 	LOC_Os01g02890.1	"phosphatidylserine synthase, putative"	NA	NA	GO:0006659|phosphatidylserine biosynthetic process	NA	NA
Ptp.4959.1.S1_at	A	A1TS	POPTR_0003s14350	POPTR_0003s14350 (10)	scaffold_3:14440194-14440384(-) (10)	NA	Q9LIR6	"Beta-amylase 1, chloroplastic"	AT3G23920.1	beta-amylase 1 	LOC_Os03g04770.1	"beta-amylase, putative, expressed"	Medtr5g013790.1	"Glycoside hydrolase, family 14 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4961.1.S1_at	A	A1TS	POPTR_0001s01980	POPTR_0001s01980 (11)	scaffold_1:1440287-1440525(-) (11)	NA	NA	NA	AT1G32230.2	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4962.1.S1_a_at	A	A1TS	POPTR_0018s08260	POPTR_0018s08260 (11)	scaffold_18:9135317-9135434(-) (11)	NA	Q96SW2	Protein cereblon	AT2G25740.1	ATP-dependent protease La (LON) domain protein 	LOC_Os05g44590.2	"ATP-dependent protease La, putative, expressed"	Medtr1g008210.1	"Peptidase S16, lon N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
Ptp.4962.1.S1_at	A	A1TS	POPTR_0018s08260	POPTR_0018s08260 (10)	scaffold_18:9135420-9136424(-) (10)	NA	Q96SW2	Protein cereblon	AT2G25740.1	ATP-dependent protease La (LON) domain protein 	LOC_Os05g44590.2	"ATP-dependent protease La, putative, expressed"	Medtr1g008210.1	"Peptidase S16, lon N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
Ptp.4962.2.A1_at	A	A1TS	POPTR_0018s08260	POPTR_0018s08260 (11)	scaffold_18:9135127-9135316(-) (11)	NA	Q96SW2	Protein cereblon	AT2G25740.1	ATP-dependent protease La (LON) domain protein 	LOC_Os05g44590.2	"ATP-dependent protease La, putative, expressed"	Medtr1g008210.1	"Peptidase S16, lon N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
Ptp.4964.1.S1_at	A	A1TS	POPTR_0001s28440	POPTR_0001s28440 (11)	scaffold_1:27222658-27223082(-) (11)	NA	O80873	Uncharacterized protein At1g07170/At2g30000	AT2G30000.1	PHF5-like protein 	LOC_Os05g30410.1	"PHF5-like protein domain containing protein, expressed"	Medtr4g024080.1	Protein of unknown function UPF0123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4965.1.S1_x_at	A	A1TS	POPTR_0019s13150	POPTR_0019s13150 (11)	scaffold_19:14128028-14128905(+) (11)	NA	O24058	Metallothionein-like protein type 2	AT3G09390.1	metallothionein 2A 	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
Ptp.4966.1.S1_s_at	A	A1TA	POPTR_0008s11320	POPTR_0008s11320 (11)	scaffold_8:7161878-7161916(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4967.1.A1_at	A	A1TS	POPTR_0003s10850	POPTR_0003s10850 (11)	scaffold_3:11706091-11707145(-) (11)	NA	P83436	Conserved oligomeric Golgi complex subunit 7	AT5G51430.1	conserved oligomeric Golgi complex component-related / COG complex component-related 	LOC_Os06g45830.1	expressed protein	Medtr6g005500.1	"conserved oligomeric Golgi complex component 7-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4970.1.S1_s_at	A	A1TS	POPTR_0005s11280	POPTR_0005s11280 (11)	scaffold_5:8176526-8176747(+) (11)	NA	Q9EQH3	Vacuolar protein sorting-associated protein 35	AT2G17790.1	VPS35 homolog A 	LOC_Os03g58700.1	"vacuolar protein sorting-associated protein 35, putative, expressed"	Medtr5g022510.1	Vacuolar protein sorting-associated protein 35 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4972.1.S1_s_at	A	A1TS	POPTR_0008s04700	POPTR_0008s04700 (11)	scaffold_8:2702364-2702917(+) (11)	NA	Q7SXR3	Macrophage erythroblast attacher	AT3G55070.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os05g06760.1	"macrophage erythroblast attacher, putative, expressed"	Medtr1g146370.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4973.1.S1_at	A	A1MS	POPTR_0001s35450	POPTR_0001s35450 (11)	scaffold_1:33787076-33787127(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G14500.1	aldose 1-epimerase family protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.4973.1.S1_s_at	A	A1TS	POPTR_0001s35450	POPTR_0001s35450 (11)	scaffold_1:33785722-33786590(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G14500.1	aldose 1-epimerase family protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.4976.1.A1_at	A	A2TA	POPTR_0004s13090	POPTR_0023s00630 (11)//POPTR_0004s13090 (11)	scaffold_23:461506-461636(-) (11)//scaffold_4:12508452-12508582(+) (11)	NA	Q9FKA5	Uncharacterized protein At5g39570	AT5G39570.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g12580.1	"pro-resilin precursor, putative, expressed"	Medtr6g013300.1	"Stress protein DDR48, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4977.1.S1_s_at	A	A1TS	POPTR_0013s13200	POPTR_0013s13200 (11)	scaffold_13:13752613-13752890(-) (11)	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT3G59780.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g67120.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr3g105210.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4978.1.S1_at	A	A1TS	POPTR_0005s12300	POPTR_0005s12300 (11)	scaffold_5:9082245-9083477(-) (11)	NA	O05235	Uncharacterized hydrolase yugF	AT4G36530.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g47620.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g035000.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4979.1.S1_a_at	A	A1TS	POPTR_0017s10750	POPTR_0017s10750 (10)	scaffold_17:10265680-10267356(+) (11)	NA	NA	NA	AT5G40500.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g40670.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4981.1.S1_at	A	A1TS	POPTR_0001s14410	POPTR_0001s14410 (11)	scaffold_1:11295910-11297084(-) (11)	NA	Q55680	Uncharacterized protein sll0005	AT3G24190.1	Protein kinase superfamily protein 	LOC_Os02g57160.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4982.1.S1_s_at	A	A1TS	POPTR_0004s17020	POPTR_0004s17020 (11)	scaffold_4:17372023-17372172(-) (11)	NA	Q43075	Arginine decarboxylase	AT4G34710.2	arginine decarboxylase 2 	LOC_Os06g04070.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr4g097390.1	Arginine decarboxylase 	NA	GO:0003824|catalytic activity	NA
Ptp.4984.1.S1_s_at	A	A4TS	POPTR_0008s15760	POPTR_0008s15770 (11)//POPTR_0008s15800 (11)//POPTR_0008s15760 (11)//POPTR_0008s15780 (11)	scaffold_8:10504329-10504585(-) (11)//scaffold_8:10508365-10508621(-) (11)//scaffold_8:10512725-10512981(-) (11)//scaffold_8:10518396-10518652(-) (11)	NA	P11432	"Early light-induced protein, chloroplastic"	AT3G22840.1	Chlorophyll A-B binding family protein 	LOC_Os07g08160.1	"early light-induced protein, chloroplast precursor, putative, expressed"	AC233674_4.1	"Early light-induced protein, chloroplast precursor, putative AC233674.1 17917-16810 E EGN_Mt090430 200"	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.4986.1.S1_s_at	A	A1TS	POPTR_0007s08420	POPTR_0007s08420 (11)	scaffold_7:7243243-7245958(-) (11)	NA	Q84TE6	NAC domain-containing protein 21/22	AT1G56010.2	NAC domain containing protein 1 	LOC_Os06g46270.1	"no apical meristem protein, putative, expressed"	Medtr2g076740.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.4987.1.S1_at	A	A1TS	POPTR_0001s37670	POPTR_0001s37670 (11)	scaffold_1:36641784-36641859(-) (11)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4987.2.S1_s_at	A	A1MS	POPTR_0001s37670	POPTR_0001s37670 (11)	scaffold_1:36642843-36643015(-) (11)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4988.1.S1_at	A	A1TS	POPTR_0002s25810	POPTR_0002s25810 (11)	scaffold_2:22863135-22863553(-) (11)	NA	Q0JG75	"Photosystem II reaction center PSB28 protein, chloroplastic"	AT4G28660.1	photosystem II reaction center PSB28 protein 	LOC_Os01g71190.1	"photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex
Ptp.4988.2.S1_a_at	A	A1TS	POPTR_0002s25810	POPTR_0002s25810 (11)	scaffold_2:22863567-22863646(-) (11)	NA	Q0JG75	"Photosystem II reaction center PSB28 protein, chloroplastic"	AT4G28660.1	photosystem II reaction center PSB28 protein 	LOC_Os01g71190.1	"photosystem II reaction center PSB28 protein, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex
Ptp.4990.1.S1_at	A	A1TS	POPTR_0007s12000	POPTR_0007s12000 (9)	scaffold_7:12342336-12343403(-) (9)	NA	O23166	"Thioredoxin-like protein HCF164, chloroplastic"	AT4G37200.1	Thioredoxin superfamily protein 	LOC_Os03g55820.1	"thioredoxin, putative, expressed"	Medtr5g018600.2	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.4991.1.S1_at	A	A1TS	POPTR_0004s02180	POPTR_0004s02180 (11)	scaffold_4:1344842-1345965(-) (11)	NA	Q58E03	DnaJ homolog subfamily C member 25	AT1G61770.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g15590.2	"heat shock protein DnaJ, putative, expressed"	Medtr3g030790.1	DnaJ central region 	NA	GO:0031072|heat shock protein binding	NA
Ptp.4992.1.S1_at	A	A1TS	POPTR_0004s16860	POPTR_0004s16860 (11)	scaffold_4:17236433-17236809(+) (11)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os01g54210.1	"GATA zinc finger domain containing protein, expressed"	Medtr4g097100.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.4993.1.S1_at	A	A1TS	POPTR_0013s15280	POPTR_0013s15280 (10)	scaffold_13:15295749-15296070(-) (10)	NA	Q6S4P4	Transcription factor RF2b	AT2G40620.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g21800.2	"bZIP transcription factor family protein, putative, expressed"	Medtr5g083200.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.4996.1.S1_at	A	A1TS	POPTR_0001s13810	POPTR_0001s13810 (11)	scaffold_1:10898163-10898696(-) (11)	NA	NA	NA	AT5G43260.1	chaperone protein dnaJ-related 	LOC_Os02g30320.1	"drought-induced protein 1, putative, expressed"	Medtr3g103850.1	"drought-induced protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4997.1.A1_a_at	A	A1TS	POPTR_0014s12680	POPTR_0014s12680 (11)	scaffold_14:9321122-9321163(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4997.2.A1_s_at	A	A1TS	POPTR_0014s12680	POPTR_0014s12680 (11)	scaffold_14:9320747-9320845(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4998.1.S1_s_at	A	A1TS	POPTR_0008s23020	POPTR_0008s23020 (11)	scaffold_8:18234145-18235489(-) (11)	NA	Q9SSR1	"DCC family protein At1g52590, chloroplastic"	AT1G52590.1	Putative thiol-disulphide oxidoreductase DCC 	LOC_Os01g07800.2	"thiol-disulphide oxidoreductase DCC, putative, expressed"	Medtr2g126240.1	Putative thiol-disulphide oxidoreductase DCC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.50.1.A1_s_at	A	A1TS	POPTR_0010s19230	POPTR_0010s19230 (11)	scaffold_10:17209145-17210414(+) (11)	NA	P56286	Eukaryotic translation initiation factor 2 subunit alpha	AT2G40290.1	Eukaryotic translation initiation factor 2 subunit 1 	LOC_Os03g18510.1	expressed protein	Medtr3g094730.1	"RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005850|eukaryotic translation initiation factor 2 complex
Ptp.500.1.A1_at	A	A1TS	POPTR_0004s15980	POPTR_0004s15980 (9)	scaffold_4:16449746-16450306(-) (9)	NA	Q9SXA1	Phosphatidylinositol 4-kinase alpha	AT1G49340.1	Phosphatidylinositol 3- and 4-kinase family protein 	LOC_Os03g50320.1	"phosphatidylinositol 4-kinase PI4K, putative, expressed"	Medtr3g159720.1	Ribosomal protein L2; Protein kinase-like; ; 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0004428|inositol or phosphatidylinositol kinase activity"	NA
Ptp.5002.1.S1_at	A	A1TS	POPTR_0004s05970	POPTR_0004s05970 (11)	scaffold_4:4702677-4703133(+) (11)	NA	NA	NA	AT1G29290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g135670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5003.1.S1_s_at	A	A1TS	POPTR_0007s02520	POPTR_0007s02520 (11)	scaffold_7:1490679-1492114(-) (11)	NA	O48650	Protein translation factor SUI1 homolog	AT4G27130.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.2	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.5005.1.S1_s_at	A	A1TS	POPTR_0004s24160	POPTR_0004s24160 (11)	scaffold_4:22893411-22894093(-) (11)	NA	Q3E875	Uncharacterized Rho GTPase-activating protein At5g61530	AT5G61530.1	small G protein family protein / RhoGAP family protein 	LOC_Os07g30300.1	"small G protein family protein, putative, expressed"	NA	NA	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.5007.2.S1_a_at	A	A1TS	POPTR_0009s03660	POPTR_0009s03660 (11)	scaffold_9:4273669-4273707(+) (11)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5007.2.S1_at	A	A1MS	POPTR_0009s03660	POPTR_0009s03660 (11)	scaffold_9:4273481-4273636(+) (11)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5007.2.S1_s_at	A	A1TS	POPTR_0009s03660	POPTR_0009s03660 (10)	scaffold_9:4273708-4273950(+) (10)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5008.1.S1_at	A	A1TS	POPTR_0001s41750	POPTR_0001s41750 (11)	scaffold_1:41444859-41446437(-) (11)	NA	Q2QY07	Cytochrome c-type biogenesis ccda-like chloroplastic protein 2	AT5G54290.1	cytochrome c biogenesis protein family 	LOC_Os12g04270.1	"cytochrome c-type biogenesis protein dbsD-like, putative, expressed"	NA	NA	GO:0017004|cytochrome complex assembly||GO:0055114|oxidation reduction	NA	GO:0016020|membrane
Ptp.5009.1.S1_s_at	A	A1TS	POPTR_0010s23640	POPTR_0010s23640 (11)	scaffold_10:20171133-20171652(+) (11)	NA	Q9M060	Eukaryotic translation initiation factor 6-2	AT3G55620.1	Translation initiation factor IF6 	LOC_Os07g44620.2	"eukaryotic translation initiation factor 6, putative, expressed"	Medtr7g035240.1	Translation initiation factor IF6 	GO:0070925|organelle assembly||GO:0042256|mature ribosome assembly	GO:0043022|ribosome binding	NA
Ptp.5010.1.S1_at	A	A1TS	POPTR_0008s16780	POPTR_0008s16780 (11)	scaffold_8:11289968-11291993(+) (11)	NA	Q9LW64	Uncharacterized protein At3g23325	AT3G23325.1	Splicing factor 3B subunit 5/RDS3 complex subunit 10 	LOC_Os08g34480.1	"splicing factor 3B subunit 5, putative, expressed"	Medtr8g074010.1	Splicing factor 3B subunit 10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5010.2.S1_at	A	A1TS	POPTR_0010s08120	POPTR_0010s08120 (11)	scaffold_10:9052006-9052041(-) (11)	NA	Q9LW64	Uncharacterized protein At3g23325	AT3G23325.1	Splicing factor 3B subunit 5/RDS3 complex subunit 10 	LOC_Os08g34480.1	"splicing factor 3B subunit 5, putative, expressed"	Medtr8g074010.1	Splicing factor 3B subunit 10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5010.2.S1_s_at	A	A1TS	POPTR_0010s08120	POPTR_0010s08120 (11)	scaffold_10:9052027-9052346(-) (11)	NA	Q9LW64	Uncharacterized protein At3g23325	AT3G23325.1	Splicing factor 3B subunit 5/RDS3 complex subunit 10 	LOC_Os08g34480.1	"splicing factor 3B subunit 5, putative, expressed"	Medtr8g074010.1	Splicing factor 3B subunit 10 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5011.1.A1_s_at	A	A1TS	POPTR_0004s24230	POPTR_0004s24230 (11)	scaffold_4:22939836-22939987(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5011.3.A1_s_at	A	A1TS	POPTR_0004s24230	POPTR_0004s24230 (11)	scaffold_4:22938943-22939243(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5013.1.S1_at	A	A1TS	POPTR_0015s14240	POPTR_0015s14240 (11)	scaffold_15:13924737-13925397(-) (11)	NA	Q6PCF8	CDGSH iron-sulfur domain-containing protein 2A	AT5G51720.1	"2 iron, 2 sulfur cluster binding "	LOC_Os07g28400.1	"CDGSH iron sulfur domain-containing protein 1, putative, expressed"	NA	NA	NA	"GO:0051537|""2 iron, 2 sulfur cluster binding"""	GO:0043231|intracellular membrane-bounded organelle
Ptp.5013.1.S1_s_at	A	A2TS	POPTR_0012s14230	POPTR_0012s14230 (11)//POPTR_0015s14240 (11)	scaffold_12:14197218-14197602(-) (11)//scaffold_15:13924874-13925174(-) (11)	NA	Q6PCF8	CDGSH iron-sulfur domain-containing protein 2A	AT5G51720.1	"2 iron, 2 sulfur cluster binding "	LOC_Os07g28400.1	"CDGSH iron sulfur domain-containing protein 1, putative, expressed"	NA	NA	NA	"GO:0051537|""2 iron, 2 sulfur cluster binding"""	GO:0043231|intracellular membrane-bounded organelle
Ptp.5015.1.S1_s_at	A	A2TS	POPTR_0006s24300	POPTR_0006s24300 (11)//POPTR_0006s24290 (9)	scaffold_6:22931379-22931805(+) (11)//scaffold_6:22943489-22943915(+) (11)	NA	NA	NA	AT4G33050.3	calmodulin-binding family protein 	LOC_Os01g38980.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5017.1.S1_at	A	A1TS	POPTR_0010s12240	POPTR_0010s12240 (11)	scaffold_10:12297542-12298047(+) (11)	NA	Q9C9U4	Mitogen-activated protein kinase 15	AT1G73670.1	MAP kinase 15 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5018.1.S1_s_at	A	A1TS	POPTR_0005s07900	POPTR_0005s07900 (11)	scaffold_5:5450648-5451186(-) (11)	NA	Q8H1E4	Ethylene-responsive transcription factor RAP2-4	AT1G78080.1	related to AP2 4 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	CU651566_18.1	Pathogenesis-related transcriptional factor and ERF CU651566.9 95071-96871 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.5019.1.S1_at	A	A1MA	POPTR_0002s25120	POPTR_0002s25120 (9)	scaffold_2:22311220-22311882(+) (9)	NA	Q9SW95	"Asparaginyl-tRNA synthetase, cytoplasmic 2"	AT3G07420.1	asparaginyl-tRNA synthetase 2 	LOC_Os01g27520.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr8g011980.1	"tRNA synthetase, class II (D, K and N) "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.502.1.S1_s_at	A	A1TS	POPTR_0010s06130	POPTR_0010s06130 (11)	scaffold_10:7553609-7554432(-) (11)	NA	Q9SAF0	Oxysterol-binding protein-related protein 1D	AT1G13170.1	OSBP(oxysterol binding protein)-related protein 1D 	LOC_Os12g18770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g102710.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
Ptp.5020.1.S1_s_at	A	A2TS	POPTR_0003s15730	POPTR_0381s00240 (11)//POPTR_0003s15730 (11)	scaffold_3:15454892-15455379(-) (11)//scaffold_381:16485-16972(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5021.1.S1_at	A	A1TS	POPTR_0010s16370	POPTR_0010s16370 (11)	scaffold_10:15328525-15328969(-) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5023.1.S1_s_at	A	A1TS	POPTR_0001s30060	POPTR_0001s30060 (11)	scaffold_1:28644314-28644607(-) (11)	NA	Q43295	"Adenylyl-sulfate kinase 1, chloroplastic"	AT2G14750.1	APS kinase 	LOC_Os11g41650.2	"adenylyl-sulfate kinase, putative, expressed"	Medtr5g015640.1	Adenylylsulfate kinase 	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.5025.1.S1_at	A	A1TS	POPTR_0002s13750	POPTR_0002s13750 (11)	scaffold_2:10200072-10200154(+) (11)	NA	Q86BN8	Protein-tyrosine phosphatase mitochondrial 1-like protein	AT2G35680.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os10g41240.1	"dual specificity protein phosphatase, putative, expressed"	Medtr8g105260.2	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.5025.1.S1_s_at	A	A1TS	POPTR_0002s13750	POPTR_0002s13750 (11)	scaffold_2:10200534-10201511(+) (11)	NA	Q86BN8	Protein-tyrosine phosphatase mitochondrial 1-like protein	AT2G35680.1	Phosphotyrosine protein phosphatases superfamily protein 	LOC_Os10g41240.1	"dual specificity protein phosphatase, putative, expressed"	Medtr8g105260.2	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.5026.1.S1_at	A	A1TS	POPTR_0005s11030	POPTR_0005s11030 (11)	scaffold_5:7958124-7958245(-) (11)	NA	Q5Z8P0	Probable protein phosphatase 2C 60	AT3G51370.1	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5026.1.S1_s_at	A	A1TS	POPTR_0005s11030	POPTR_0005s11030 (11)	scaffold_5:7957731-7958137(-) (11)	NA	Q5Z8P0	Probable protein phosphatase 2C 60	AT3G51370.1	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5027.1.S1_at	A	A1TS	POPTR_0001s28930	POPTR_0001s28930 (11)	scaffold_1:27663044-27664880(-) (11)	NA	O64730	Probable protein phosphatase 2C 26	AT2G30170.1	Protein phosphatase 2C family protein 	LOC_Os01g07090.1	"5-azacytidine resistance protein azr1, putative, expressed"	Medtr3g033950.1	Protein phosphatase 2C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.503.1.S1_at	A	A1TS	POPTR_0005s21620	POPTR_0005s21620 (11)	scaffold_5:20734676-20735121(+) (11)	NA	Q9SJ22	Probable cellulose synthase A catalytic subunit 9 [UDP-forming]	AT2G21770.1	cellulose synthase A9 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr1g124990.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.5030.1.A1_at	A	A1TS	POPTR_0002s08450	POPTR_0002s08450 (9)	scaffold_2:5891501-5891673(-) (9)	NA	Q9CAP8	"Long chain acyl-CoA synthetase 9, chloroplastic"	AT1G77590.1	long chain acyl-CoA synthetase 9 	LOC_Os12g07110.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g100870.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.5030.1.A1_x_at	A	A1TS	POPTR_0002s08450	POPTR_0002s08450 (10)	scaffold_2:5891501-5892993(-) (10)	NA	Q9CAP8	"Long chain acyl-CoA synthetase 9, chloroplastic"	AT1G77590.1	long chain acyl-CoA synthetase 9 	LOC_Os12g07110.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g100870.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.5031.1.S1_at	A	A1TS	POPTR_0015s09730	POPTR_0015s09730 (11)	scaffold_15:10869822-10870604(-) (11)	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os12g27520.1	"serine/threonine-protein kinase AFC2, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5031.2.S1_at	A	A1TS	POPTR_0015s09730	POPTR_0015s09730 (10)	scaffold_15:10873156-10873225(-) (10)	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os12g27520.1	"serine/threonine-protein kinase AFC2, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5034.1.A1_a_at	A	A1TS	POPTR_0010s17170	POPTR_0010s17170 (11)	scaffold_10:15886878-15888118(+) (11)	NA	P18160	Dual specificity protein kinase pyk1	AT1G14000.1	VH1-interacting kinase 	LOC_Os07g43900.1	"protein kinase domain containing protein, expressed"	Medtr5g099160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5036.1.S1_s_at	A	A1TS	POPTR_0001s26960	POPTR_0001s26960 (11)	scaffold_1:25932166-25933084(-) (11)	NA	NA	NA	AT5G12470.1	Protein of unknown function (DUF3411) 	LOC_Os05g32230.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5037.1.S1_at	A	A1TS	POPTR_0001s33270	POPTR_0001s33270 (10)	scaffold_1:31462422-31463233(-) (10)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.5037.1.S1_s_at	A	A1TS	POPTR_0001s33270	POPTR_0001s33270 (9)	scaffold_1:31462689-31463003(-) (9)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.5038.1.S1_at	A	A1TS	POPTR_0008s08850	POPTR_0008s08850 (11)	scaffold_8:5488258-5488470(-) (11)	NA	O49255	NAC domain-containing protein 29	AT1G69490.1	"NAC-like, activated by AP3/PI "	LOC_Os12g03040.1	"no apical meristem protein, putative, expressed"	Medtr5g045070.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.5040.1.S1_at	A	A1TS	POPTR_0009s07670	POPTR_0009s07670 (10)	scaffold_9:7110827-7111500(-) (10)	NA	Q5R628	U6 snRNA-associated Sm-like protein LSm5	AT5G48870.1	Small nuclear ribonucleoprotein family protein 	LOC_Os05g32310.1	"LSM domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5041.2.S1_a_at	A	A1TS	POPTR_0006s09880	POPTR_0006s09880 (10)	scaffold_6:7291110-7291163(-) (10)	NA	O06423	GDP-mannose-dependent alpha-mannosyltransferase	AT5G01220.1	sulfoquinovosyldiacylglycerol 2 	LOC_Os07g01030.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr3g024590.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.5041.2.S1_at	A	A1TS	POPTR_0006s09880	POPTR_0006s09880 (11)	scaffold_6:7291210-7291459(-) (11)	NA	O06423	GDP-mannose-dependent alpha-mannosyltransferase	AT5G01220.1	sulfoquinovosyldiacylglycerol 2 	LOC_Os07g01030.1	"glycosyl transferase, group 1 domain containing protein, expressed"	Medtr3g024590.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.5042.1.S1_at	A	A1TS	POPTR_0001s26020	POPTR_0001s26020 (11)	scaffold_1:25111855-25113132(-) (11)	NA	Q56YA5	Serine--glyoxylate aminotransferase	AT2G13360.2	alanine:glyoxylate aminotransferase 	LOC_Os08g39300.4	"aminotransferase, putative, expressed"	Medtr3g071320.2	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5042.3.S1_a_at	A	A1TS	POPTR_0009s05240	POPTR_0009s05240 (11)	scaffold_9:5372179-5372683(-) (11)	NA	Q56YA5	Serine--glyoxylate aminotransferase	AT2G13360.2	alanine:glyoxylate aminotransferase 	LOC_Os08g39300.4	"aminotransferase, putative, expressed"	Medtr3g071320.2	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5042.3.S1_at	A	A1MS	POPTR_0009s05240	POPTR_0009s05240 (11)	scaffold_9:5371946-5372043(-) (11)	NA	Q56YA5	Serine--glyoxylate aminotransferase	AT2G13360.2	alanine:glyoxylate aminotransferase 	LOC_Os08g39300.4	"aminotransferase, putative, expressed"	Medtr3g071320.2	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5042.3.S1_s_at	A	A2TS	POPTR_0001s26020	POPTR_0001s26020 (11)//POPTR_0009s05240 (11)	scaffold_1:25114624-25115199(-) (11)//scaffold_9:5372050-5372601(-) (11)	NA	Q56YA5	Serine--glyoxylate aminotransferase	AT2G13360.2	alanine:glyoxylate aminotransferase 	LOC_Os08g39300.4	"aminotransferase, putative, expressed"	Medtr3g071320.2	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5043.1.S1_at	A	A1TS	POPTR_0010s11760	POPTR_0010s11760 (11)	scaffold_10:11934491-11934800(+) (11)	NA	Q9ZU95	"Nudix hydrolase 17, mitochondrial"	AT2G01670.1	nudix hydrolase homolog 17 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g157270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.5043.1.S1_s_at	A	A1TS	POPTR_0010s11760	POPTR_0010s11760 (10)	scaffold_10:11934984-11935261(+) (10)	NA	Q9ZU95	"Nudix hydrolase 17, mitochondrial"	AT2G01670.1	nudix hydrolase homolog 17 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g157270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.5044.1.S1_s_at	A	A1TS	POPTR_0005s02060	POPTR_0005s02060 (11)	scaffold_5:1333369-1335067(+) (11)	NA	Q6GHH1	DNA polymerase III polC-type	AT5G26940.4	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os03g18940.1	"exonuclease, putative, expressed"	Medtr7g138210.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5045.1.S1_at	A	A1TS	POPTR_0015s08370	POPTR_0015s08370 (9)	scaffold_15:9617998-9618783(-) (10)	NA	NA	NA	AT5G50090.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g50810.1	expressed protein	Medtr8g125270.1	"T10O24.15, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5046.1.S1_at	A	A1TS	POPTR_0015s06930	POPTR_0015s06930 (11)	scaffold_15:7957564-7958370(-) (11)	NA	P09394	Glycerophosphoryl diester phosphodiesterase	AT1G74210.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os01g55780.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr3g076710.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.5049.2.S1_s_at	A	A2TS	POPTR_0064s00290	POPTR_0064s00290 (11)//POPTR_0016s13440 (10)	scaffold_16:12604170-12605227(-) (10)//scaffold_64:92869-93926(+) (11)	NA	P81748	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os12g01680.1	"macrophage migration inhibitory factor, putative"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5051.1.S1_x_at	A	A1TS	POPTR_0002s03020	POPTR_0002s03020 (11)	scaffold_2:1878288-1878598(-) (11)	NA	P25804	Cysteine proteinase 15A	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.5052.1.S1_s_at	A	A1TS	POPTR_0002s20670	POPTR_0002s20670 (11)	scaffold_2:16741750-16743142(-) (11)	NA	NA	NA	AT2G47710.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os12g36640.2	"universal stress protein domain containing protein, putative, expressed"	Medtr1g108490.2	Universal stress protein (Usp) 	GO:0006950|response to stress	NA	NA
Ptp.5053.1.S1_at	A	A1TS	POPTR_0009s06200	POPTR_0009s06200 (9)	scaffold_9:6046661-6049155(+) (9)	NA	Q9LY66	"50S ribosomal protein L1, chloroplastic"	AT3G63490.1	Ribosomal protein L1p/L10e family 	LOC_Os05g32220.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr4g110000.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.5056.1.A1_at	A	A1TA	POPTR_0008s03290	POPTR_0008s03290 (10)	scaffold_8:1754836-1755462(+) (10)	NA	P49311	Glycine-rich RNA-binding protein GRP2A	AT5G04280.1	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain 	LOC_Os07g08960.1	"RNA recognition motif containing protein, expressed"	Medtr2g008300.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.5057.1.S1_a_at	A	A1TS	POPTR_0005s23230	POPTR_0005s23230 (11)	scaffold_5:22061149-22061824(-) (11)	NA	NA	NA	AT4G02725.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). "	LOC_Os03g49450.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5058.1.A1_at	A	A1TS	POPTR_0009s08220	POPTR_0009s08220 (11)	scaffold_9:7562803-7564469(-) (11)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.1	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5059.1.S1_at	A	A1TS	POPTR_0008s13830	POPTR_0008s13830 (10)	scaffold_8:9120609-9120650(+) (10)	NA	NA	NA	AT1G14710.2	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g13560.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5059.1.S1_s_at	A	A1TS	POPTR_0008s13830	POPTR_0008s13830 (11)	scaffold_8:9120222-9120675(+) (11)	NA	NA	NA	AT1G14710.2	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g13560.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.506.1.A1_at	A	A1TS	POPTR_0001s43110	POPTR_0001s43110 (11)	scaffold_1:43184513-43185342(+) (11)	NA	Q9SPE5	Gamma-soluble NSF attachment protein	AT4G20410.1	gamma-soluble NSF attachment protein 	LOC_Os04g52760.1	"gamma-soluble NSF attachment protein, putative, expressed"	AC225479_22.1	Tetratricopeptide-like helical AC225479.3 102118-96445 F EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005783|endoplasmic reticulum||GO:0005794|Golgi apparatus
Ptp.5061.1.S1_s_at	A	A1TS	POPTR_0001s14140	POPTR_0001s14140 (11)	scaffold_1:11105515-11105662(+) (11)	POPTR_0003s17350 (6)	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT2G33170.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g42700.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.5062.1.S1_at	A	A1TS	POPTR_0006s16210	POPTR_0006s16210 (11)	scaffold_6:14123339-14123790(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g158730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5063.1.S1_at	A	A1TS	POPTR_0001s18330	POPTR_0001s18330 (10)	scaffold_1:15377786-15377819(-) (10)//scaffold_1872:1795-1828(+) (10)	NA	O24461	Ras-related protein Rab7	AT3G16100.1	RAB GTPase homolog G3C 	LOC_Os01g12730.1	"ras-related protein, putative, expressed"	Medtr4g009230.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5063.1.S1_s_at	A	A1TS	POPTR_0001s18330	POPTR_0001s18330 (11)	scaffold_1:15377816-15378822(-) (11)//scaffold_1872:795-1798(+) (11)	POPTR_1872s00200 (7)	O24461	Ras-related protein Rab7	AT3G16100.1	RAB GTPase homolog G3C 	LOC_Os01g12730.1	"ras-related protein, putative, expressed"	Medtr4g009230.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5067.1.S1_s_at	A	A1TS	POPTR_0008s19770	POPTR_0008s19770 (11)	scaffold_8:13634646-13635512(+) (11)	NA	NA	NA	AT1G70180.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g39090.1	"SAM domain containing protein, putative, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5068.1.S1_a_at	A	A1TS	POPTR_0006s05190	POPTR_0006s05190 (11)	scaffold_6:3638262-3641141(+) (11)	NA	Q96A57	UPF0414 transmembrane protein C20orf30	AT3G29170.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os12g03500.2	expressed protein	Medtr2g021620.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5068.2.A1_a_at	A	A1TS	POPTR_0006s05190	POPTR_0006s05190 (11)	scaffold_6:3638262-3641154(+) (11)	NA	Q96A57	UPF0414 transmembrane protein C20orf30	AT3G29170.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os12g03500.2	expressed protein	Medtr2g021620.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5070.1.S1_s_at	A	A3TS	POPTR_0009s08670	POPTR_0473s00220 (11)//POPTR_0009s08670 (11)//POPTR_0009s08660 (9)	scaffold_473:3828-3973(+) (11)//scaffold_473:12305-12450(+) (11)//scaffold_9:7851119-7864599(+) (11)//scaffold_9:7856171-7864536(+) (10)	POPTR_0009s08650 (6)	P33154	Pathogenesis-related protein 1	AT4G33720.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os01g28500.1	"SCP-like extracellular protein, expressed"	Medtr2g010660.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5071.1.S1_at	A	A1TS	POPTR_0001s00860	POPTR_0001s00860 (11)	scaffold_1:715884-716985(-) (11)	POPTR_0003s10620 (7)	Q0WWQ1	Autophagy-related protein 3	AT5G61500.1	autophagy 3 (APG3) 	LOC_Os01g10290.2	"autophagy-related protein 3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5072.1.S1_s_at	A	A1TS	POPTR_0014s18990	POPTR_0014s18990 (11)	scaffold_14:16664939-16665068(+) (11)	NA	Q9FLP6	Small ubiquitin-related modifier 2	AT5G55160.1	small ubiquitin-like modifier 2 	LOC_Os01g68950.1	"ubiquitin family domain containing protein, expressed"	AC225519_6.1	Ubiquitin; Inorganic pyrophosphatase AC225519.5 35386-39197 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5073.1.S1_at	A	A1TS	POPTR_0011s13310	POPTR_0011s13310 (9)	scaffold_11:16026835-16026872(+) (9)	NA	C4XGC2	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.5075.2.S1_s_at	A	A1TS	POPTR_0004s03780	POPTR_0004s03780 (11)	scaffold_4:2634100-2634325(-) (11)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5076.1.S1_a_at	A	A1TS	POPTR_0002s17470	POPTR_0002s17470 (11)	scaffold_2:13228206-13228681(-) (11)	NA	Q498F0	WD repeat-containing protein 44	AT5G53500.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g02440.2	"WD repeat-containing protein 44, putative, expressed"	Medtr1g008870.1	"WD-40 repeat family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5078.1.S1_at	A	A1TS	POPTR_0005s17860	POPTR_0005s17860 (10)	scaffold_5:15613941-15614739(-) (10)	NA	P27140	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.2	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr5g075060.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
Ptp.508.1.S1_at	A	A1TS	POPTR_0011s16880	POPTR_0011s16880 (9)	scaffold_11:18615266-18615823(+) (9)	NA	A7RP64	RNA-binding protein pno1	AT3G13230.1	RNA-binding KH domain-containing protein 	LOC_Os03g02420.1	"KH domain containing protein, putative, expressed"	Medtr3g080390.1	"Isopenicillin N synthetase; KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.5081.1.S1_at	A	A1TS	POPTR_0009s08820	POPTR_0009s08820 (11)	scaffold_9:7980988-7982308(+) (11)	NA	NA	NA	AT1G50020.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 72 Blast hits to 72 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os11g34870.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5082.1.S1_s_at	A	A1TS	POPTR_0006s11570	POPTR_0006s11570 (11)	scaffold_6:8775796-8776477(-) (11)	NA	Q43497	Monodehydroascorbate reductase	AT3G52880.1	monodehydroascorbate reductase 1 	LOC_Os09g39380.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.5085.1.S1_s_at	A	A1TS	POPTR_0005s26870	POPTR_0005s26870 (10)	scaffold_5:24727667-24727926(+) (10)	NA	P48147	Prolyl endopeptidase	AT1G76140.1	Prolyl oligopeptidase family protein 	LOC_Os01g01830.1	"OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.5087.1.S1_s_at	A	A1TS	POPTR_0002s24010	POPTR_0002s24010 (11)	scaffold_2:21491959-21492381(+) (11)	NA	NA	NA	AT3G07480.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os09g33950.1	"ferredoxin 1-like isoform 1, putative, expressed"	Medtr7g046710.1	2Fe-2S Ferredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.509.1.S1_at	A	A1TS	POPTR_0002s16230	POPTR_0002s16230 (11)	scaffold_2:12142072-12142484(+) (11)	NA	Q6EVK6	ATP-dependent helicase BRM	AT2G46020.2	"transcription regulatory protein SNF2, putative "	LOC_Os02g02290.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g087810.1	"SNF2-related; Bromodomain; Helicase, C-terminal; ; "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0005634|nucleus
Ptp.5091.1.A1_at	A	A1TS	POPTR_0004s16080	POPTR_0004s16080 (11)	scaffold_4:16528730-16528855(-) (11)	NA	P31022	Ras-related protein Rab7	AT3G18820.1	RAB GTPase homolog G3F 	LOC_Os05g44050.1	"ras-related protein, putative, expressed"	Medtr4g095400.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5092.1.S1_at	A	A1TS	POPTR_0003s03330	POPTR_0003s03330 (11)	scaffold_3:3708582-3709137(-) (11)	NA	O23553	"Beta-amylase 3, chloroplastic"	AT4G17090.1	chloroplast beta-amylase 	LOC_Os10g41550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.5093.1.S1_a_at	A	A1TS	POPTR_0001s09770	POPTR_0001s09770 (11)	scaffold_1:7511674-7512196(-) (11)	NA	Q01332	Beta-carotene hydroxylase	AT4G25700.1	beta-hydroxylase 1 	LOC_Os03g03370.1	"fatty acid hydroxylase, putative, expressed"	Medtr1g126460.2	Carotene hydroxylase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
Ptp.5095.2.S1_a_at	A	A1TS	POPTR_0006s26480	POPTR_0006s26480 (11)	scaffold_6:24706769-24707389(+) (11)	NA	Q99437	V-type proton ATPase 21 kDa proteolipid subunit	AT2G25610.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os01g42430.1	"vacuolar ATP synthase, putative, expressed"	Medtr7g107360.1	"H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.5096.1.S1_s_at	A	A2TS	POPTR_0006s06880	POPTR_0006s06880 (11)//POPTR_0018s13140 (9)	scaffold_18:13589522-13591138(+) (9)//scaffold_6:4984474-4985986(+) (11)	NA	O48781	SPX domain-containing protein 2	AT2G26660.1	SPX domain gene 2 	LOC_Os06g40120.1	"SPX domain containing protein, putative, expressed"	Medtr8g120400.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5098.1.S1_s_at	A	A1TS	POPTR_0010s19580	POPTR_0010s19580 (11)	scaffold_10:17470779-17470985(+) (11)	NA	Q9GZU7	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.51.1.A1_at	A	A1MS	POPTR_0009s07480	POPTR_0009s07480 (11)	scaffold_9:6973554-6974008(-) (11)	NA	NA	NA	AT5G19430.1	RING/U-box superfamily protein 	LOC_Os01g72480.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g100950.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5101.1.S1_at	A	A1TS	POPTR_0008s03990	POPTR_0008s03990 (11)	scaffold_8:2202514-2202593(+) (11)	NA	Q8VX13	Protein disulfide isomerase-like 1-3	AT3G54960.1	PDI-like 1-3 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.5101.1.S1_s_at	A	A1TS	POPTR_0008s03990	POPTR_0008s03990 (11)	scaffold_8:2198295-2202477(+) (11)	NA	Q8VX13	Protein disulfide isomerase-like 1-3	AT3G54960.1	PDI-like 1-3 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.5102.1.A1_at	A	A1TS	POPTR_0015s12470	POPTR_0015s12470 (11)	scaffold_15:12713124-12713160(+) (11)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5102.1.A1_x_at	A	A1TS	POPTR_0015s12470	POPTR_0015s12470 (11)	scaffold_15:12713124-12713261(+) (11)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5103.1.S1_at	A	A1TS	POPTR_0001s10370	POPTR_0001s10370 (10)	scaffold_1:8053166-8053233(-) (10)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5103.1.S1_s_at	A	A1TS	POPTR_0001s10370	POPTR_0001s10370 (11)	scaffold_1:8052707-8053177(-) (11)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5104.1.S1_at	A	A1TS	POPTR_0005s20240	POPTR_0005s20240 (10)	scaffold_5:19281222-19281588(-) (10)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g66120.1	"No apical meristem protein, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.5104.1.S1_s_at	A	A1TS	POPTR_0005s20240	POPTR_0005s20240 (10)	scaffold_5:19281101-19281494(-) (10)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g66120.1	"No apical meristem protein, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.5105.1.S1_at	A	A1TS	POPTR_0016s05560	POPTR_0016s05560 (11)	scaffold_16:3496006-3496207(+) (11)	NA	A2BG43	Glycolipid transfer protein	AT2G34690.1	Glycolipid transfer protein (GLTP) family protein 	LOC_Os03g57140.1	"GLTP domain containing protein, putative, expressed"	Medtr2g130020.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
Ptp.5105.1.S1_s_at	A	A1TS	POPTR_0016s05560	POPTR_0016s05560 (11)	scaffold_16:3495833-3496099(+) (11)	NA	A2BG43	Glycolipid transfer protein	AT2G34690.1	Glycolipid transfer protein (GLTP) family protein 	LOC_Os03g57140.1	"GLTP domain containing protein, putative, expressed"	Medtr2g130020.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
Ptp.5106.1.S1_s_at	A	A1TS	POPTR_0018s10730	POPTR_0018s10730 (10)	scaffold_18:11609220-11609640(+) (10)	NA	Q9ZP41	EG45-like domain containing protein	AT4G30380.1	Barwin-related endoglucanase 	LOC_Os06g47360.1	"beta-expansin precursor, putative, expressed"	Medtr6g084060.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5107.1.S1_s_at	A	A1TS	POPTR_0001s04720	POPTR_0001s04720 (11)	scaffold_1:3655446-3657210(+) (11)	NA	NA	NA	AT2G34860.2	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os08g36140.1	expressed protein	Medtr1g146480.1	"DnaJ-like zinc-finger protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5107.2.S1_at	A	A1MA	POPTR_0001s04730	POPTR_0001s04730 (11)	scaffold_1:3658553-3658711(+) (11)	NA	Q10PP8	Metal tolerance protein 4	AT3G58060.1	Cation efflux family protein 	LOC_Os03g12530.1	"cation efflux family protein, putative, expressed"	Medtr3g083790.1	Cation efflux protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5108.1.S1_s_at	A	A1TS	POPTR_0010s16160	POPTR_0010s16160 (11)	scaffold_10:15171044-15171316(-) (11)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT5G54940.2	Translation initiation factor SUI1 family protein 	LOC_Os07g34589.3	"translation initiation factor SUI1, putative, expressed"	Medtr3g068670.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.5110.1.S1_at	A	A1TS	POPTR_0013s05360	POPTR_0013s05360 (11)	scaffold_13:3831492-3832410(-) (11)	NA	Q9FK59	Eukaryotic translation initiation factor 4E type 3	AT5G18110.1	novel cap-binding protein 	LOC_Os03g15590.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr6g031030.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.5110.1.S1_s_at	A	A1TS	POPTR_0013s05360	POPTR_0013s05360 (11)	scaffold_13:3830911-3831505(-) (11)	NA	Q9FK59	Eukaryotic translation initiation factor 4E type 3	AT5G18110.1	novel cap-binding protein 	LOC_Os03g15590.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr6g031030.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.5111.1.S1_s_at	A	A2TS	POPTR_0001s04710	POPTR_0001s04710 (11)//POPTR_0003s21530 (11)	scaffold_1:3652389-3653010(+) (11)//scaffold_3:19657240-19657878(+) (11)	NA	Q6QNM1	Casein kinase I	AT3G13670.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g005760.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5112.2.S1_a_at	A	A1TS	POPTR_0013s14960	POPTR_0013s14960 (11)	scaffold_13:15033424-15033775(-) (11)	NA	Q8S8P5	Probable WRKY transcription factor 33	AT2G38470.1	WRKY DNA-binding protein 33 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g082420.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.5114.1.S1_at	A	A1TS	POPTR_0013s09500	POPTR_0013s09500 (10)	scaffold_13:9259307-9264002(-) (10)	NA	Q9ASX5	"Uncharacterized aarF domain-containing protein kinase At5g05200, chloroplastic"	AT3G26580.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g31490.1	expressed protein	Medtr8g081910.1	"Tetratricopeptide TPR_2 repeat protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5118.1.S1_at	A	A1TS	POPTR_0009s05960	POPTR_0009s05960 (11)	scaffold_9:5916094-5917316(+) (11)	NA	NA	NA	AT5G13800.1	pheophytinase 	LOC_Os06g24730.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g041220.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5119.1.S1_s_at	A	A1TS	POPTR_0003s05760	POPTR_0003s05760 (11)	scaffold_3:7131564-7131602(-) (11)	NA	O24381	Plastidic ATP/ADP-transporter	AT1G80300.1	nucleotide transporter 1 	LOC_Os02g11740.1	"plastidic ATP/ADP-transporter, putative, expressed"	Medtr2g123610.1	ADP/ATP carrier protein 	GO:0006810|transport	GO:0005524|ATP binding||GO:0005471|ATP:ADP antiporter activity	GO:0016021|integral to membrane
Ptp.5120.1.S1_at	A	A1TS	POPTR_0016s11670	POPTR_0016s11670 (11)	scaffold_16:10879983-10880439(+) (11)	NA	Q9SR77	"Heme-binding-like protein At3g10130, chloroplastic"	AT2G37970.1	SOUL heme-binding family protein 	LOC_Os01g63210.1	"SOUL heme-binding protein, putative, expressed"	Medtr4g016000.1	SOUL heme-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5121.1.S1_a_at	A	A1TS	POPTR_0002s24730	POPTR_0002s24730 (11)	scaffold_2:22018520-22018711(+) (11)	NA	O14270	Fork head transcription factor 1	AT3G07220.1	SMAD/FHA domain-containing protein  	LOC_Os08g41710.1	"FHA domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5122.1.S1_at	A	A1TS	POPTR_0003s04170	POPTR_0003s04170 (11)	scaffold_3:4864443-4864701(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT1G72710.1	casein kinase 1-like protein 2 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr2g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5123.1.S1_s_at	A	A1TS	POPTR_0014s16660	POPTR_0014s16660 (11)	scaffold_14:12763041-12763306(+) (11)	NA	P73627	Uncharacterized protein sll1770	AT3G07700.2	Protein kinase superfamily protein 	LOC_Os09g07660.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr3g106570.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5124.2.S1_a_at	A	A1TS	POPTR_0014s01710	POPTR_0014s01710 (11)	scaffold_14:1602395-1602992(+) (11)	NA	Q5S1U6	Interferon-related developmental regulator 1	AT1G27760.1	interferon-related developmental regulator family protein / IFRD protein family 	LOC_Os07g39900.1	"interferon-related developmental regulator, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5124.2.S1_at	A	A1MS	POPTR_0014s01710	POPTR_0014s01710 (10)	scaffold_14:1602168-1602403(+) (10)	NA	Q5S1U6	Interferon-related developmental regulator 1	AT1G27760.1	interferon-related developmental regulator family protein / IFRD protein family 	LOC_Os07g39900.1	"interferon-related developmental regulator, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5125.1.S1_s_at	A	A1TS	POPTR_0009s12070	POPTR_0009s12070 (11)	scaffold_9:9916416-9917550(+) (11)	NA	P52578	Isoflavone reductase homolog	AT4G39230.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.5128.1.S1_at	A	A1TS	POPTR_0016s09000	POPTR_0016s09000 (9)	scaffold_16:6831809-6832503(+) (9)	NA	Q27968	DnaJ homolog subfamily C member 3	AT5G03160.1	homolog of mamallian P58IPK 	LOC_Os01g74580.1	"dnaJ homolog subfamily C member, putative, expressed"	Medtr7g121340.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical; ; "	NA	GO:0031072|heat shock protein binding	NA
Ptp.513.1.S1_at	A	A1TS	POPTR_0008s11460	POPTR_0008s11460 (9)	scaffold_8:7279094-7279534(+) (9)	NA	Q5EA37	Coiled-coil domain-containing protein 130	AT1G25682.1	Family of unknown function (DUF572)  	LOC_Os02g21880.1	"coiled-coil domain-containing protein, putative, expressed"	Medtr1g118070.1	Protein of unknown function DUF572 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5130.1.S1_s_at	A	A1TS	POPTR_0008s08730	POPTR_0008s08730 (11)	scaffold_8:5386407-5387119(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5131.1.S1_at	A	A5TS	POPTR_0017s07880	POPTR_0017s07920 (11)//POPTR_0017s07880 (11)//POPTR_0017s07900 (10)//POPTR_0017s07940 (10)//POPTR_0140s00210 (9)	scaffold_140:460-868(+) (9)//scaffold_140:36187-36594(+) (10)//scaffold_17:6193973-6194380(-) (11)//scaffold_17:6256468-6256875(-) (11)//scaffold_17:6281740-6282147(-) (11)//scaffold_17:6321690-6322097(-) (11)	POPTR_0140s00200 (8)	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5132.1.S1_at	A	A1TS	POPTR_0001s26210	POPTR_0001s26210 (9)	scaffold_1:25281951-25282303(+) (9)	NA	P52407	"Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform"	AT4G16260.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g71400.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr4g104070.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.5133.1.S1_s_at	A	A1TS	POPTR_0008s17090	POPTR_0008s17090 (11)	scaffold_8:11487647-11488180(+) (11)	NA	Q9SL05	"Protein PROTON GRADIENT REGULATION 5, chloroplastic"	AT2G05620.1	proton gradient regulation 5 	LOC_Os08g45190.1	"PGR5, putative, expressed"	Medtr1g065260.1	"Protein PROTON GRADIENT REGULATION 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5134.1.S1_at	A	A1TS	POPTR_0007s12650	POPTR_0007s12650 (11)	scaffold_7:12909241-12909395(+) (11)	NA	Q9SCQ7	Acidic leucine-rich nuclear phosphoprotein 32-related protein	AT3G50690.1	Leucine-rich repeat (LRR) family protein 	LOC_Os07g41694.1	"acidic leucine-rich nuclear phosphoprotein 32-related protein 1, putative, expressed"	Medtr8g093560.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
Ptp.5139.1.S1_s_at	A	A1TS	POPTR_0003s05760	POPTR_0003s05760 (11)	scaffold_3:7131633-7131669(-) (11)	NA	O24381	Plastidic ATP/ADP-transporter	AT1G80300.1	nucleotide transporter 1 	LOC_Os02g11740.1	"plastidic ATP/ADP-transporter, putative, expressed"	Medtr2g123610.1	ADP/ATP carrier protein 	GO:0006810|transport	GO:0005524|ATP binding||GO:0005471|ATP:ADP antiporter activity	GO:0016021|integral to membrane
Ptp.514.1.A1_s_at	A	A1TS	POPTR_0002s25720	POPTR_0002s25720 (11)	scaffold_2:22810380-22810581(+) (11)	NA	Q5BK63	"NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (Fragment)"	AT2G20360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g57180.1	"NADH dehydrogenase 1 alpha subcomplex subunit 9,mitochondrial precursor, putative, expressed"	NA	NA	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.5140.1.S1_at	A	A1TS	POPTR_0019s05010	POPTR_0019s05010 (11)	scaffold_19:5235274-5235453(+) (11)	NA	Q5RC72	Casein kinase I isoform delta	AT3G03940.1	Protein kinase family protein 	LOC_Os01g56580.2	"CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g100510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5140.1.S1_s_at	A	A1TS	POPTR_0019s05010	POPTR_0019s05010 (11)	scaffold_19:5235464-5237108(+) (11)	NA	Q5RC72	Casein kinase I isoform delta	AT3G03940.1	Protein kinase family protein 	LOC_Os01g56580.2	"CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g100510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5141.1.A1_at	A	A1TS	POPTR_0008s08520	POPTR_0008s08520 (11)	scaffold_8:5279897-5280182(+) (11)	NA	Q337C0	UPF0496 protein 4	AT1G01550.2	Protein of unknown function (DUF793) 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5142.1.A1_at	A	A1TS	POPTR_0003s08150	POPTR_0003s08150 (11)	scaffold_3:9567133-9567524(-) (11)	NA	Q8LB10	"ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic"	AT4G17040.1	CLP protease R subunit 4 	LOC_Os01g16530.1	"OsClp1 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.5143.1.S1_at	A	A1TS	POPTR_0014s02970	POPTR_0014s02970 (11)	scaffold_14:2433995-2434498(-) (11)	NA	NA	NA	AT2G26570.1	Plant protein of unknown function (DUF827) 	LOC_Os03g27800.1	"paramyosin, putative, expressed"	Medtr3g147820.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5144.1.S1_at	A	A1TS	POPTR_0008s08610	POPTR_0008s08610 (10)	scaffold_8:5341368-5341643(+) (10)	NA	P47082	Vacuolar amino acid transporter 1	AT3G28960.1	Transmembrane amino acid transporter family protein 	LOC_Os04g38680.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g010030.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5145.1.S1_at	A	A1TS	POPTR_0008s23030	POPTR_0008s23030 (11)	scaffold_8:18244041-18244579(-) (11)	NA	O24248	Major allergen Pru av 1	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.5146.1.S1_at	A	A1TS	POPTR_0005s19050	POPTR_0005s19050 (11)	scaffold_5:17639541-17639637(+) (11)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT5G67500.2	voltage dependent anion channel 2 	LOC_Os03g10510.2	"outer mitochondrial membrane porin, putative, expressed"	Medtr5g015680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.5147.1.S1_s_at	A	A1TS	POPTR_0001s08470	POPTR_0001s08470 (10)	scaffold_1:6453807-6454114(-) (10)	NA	NA	NA	AT4G22920.1	non-yellowing 1 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.1	"senescence-inducible chloroplast stay-green protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5148.2.S1_at	A	A1TS	POPTR_0006s23550	POPTR_0006s23550 (10)	scaffold_6:22264299-22264671(-) (10)	NA	NA	NA	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.6	"smr domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.515.1.S1_at	A	A1TS	POPTR_0005s25910	POPTR_0005s25910 (11)	scaffold_5:24116813-24116855(+) (11)	NA	Q8LE10	HVA22-like protein i	AT5G42560.1	"Abscisic acid-responsive (TB2/DP1, HVA22) family protein "	LOC_Os03g14610.1	"HVA22, putative, expressed"	Medtr3g156300.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.515.1.S1_s_at	A	A1TS	POPTR_0005s25910	POPTR_0005s25910 (11)	scaffold_5:24116429-24116802(+) (11)	NA	Q8LE10	HVA22-like protein i	AT5G42560.1	"Abscisic acid-responsive (TB2/DP1, HVA22) family protein "	LOC_Os03g14610.1	"HVA22, putative, expressed"	Medtr3g156300.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5150.1.S1_at	A	A2TS	POPTR_0007s03620	POPTR_0007s03650 (11)//POPTR_0007s03620 (11)	scaffold_7:2082502-2082816(+) (11)//scaffold_7:2090839-2091153(+) (11)	NA	P16347	Endogenous alpha-amylase/subtilisin inhibitor	AT1G73260.1	kunitz trypsin inhibitor 1 	NA	NA	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.5150.1.S1_s_at	A	A2TS	POPTR_0007s03650	POPTR_0007s03650 (10)//POPTR_0007s03620 (9)	scaffold_7:2082524-2091126(+) (11)	NA	P16347	Endogenous alpha-amylase/subtilisin inhibitor	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.5151.1.S1_s_at	A	A1TS	POPTR_0018s00810	POPTR_0018s00810 (11)	scaffold_18:710864-713425(+) (11)	NA	Q66GV0	Protein Mpv17	AT3G24570.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os01g12800.1	"peroxisomal membrane protein, putative, expressed"	Medtr1g009450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
Ptp.5151.3.S1_at	A	A1TS	POPTR_0018s00810	POPTR_0018s00810 (9)	scaffold_18:715116-715305(+) (9)	NA	Q66GV0	Protein Mpv17	AT3G24570.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os01g12800.1	"peroxisomal membrane protein, putative, expressed"	Medtr1g009450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
Ptp.5153.1.S1_at	A	A1TS	POPTR_0003s21420	POPTR_0003s21420 (10)	scaffold_3:19586043-19586076(-) (10)	NA	NA	NA	AT3G32930.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g41710.2	expressed protein	Medtr3g105910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5153.1.S1_s_at	A	A1TS	POPTR_0003s21420	POPTR_0003s21420 (11)	scaffold_3:19586120-19587682(-) (11)	NA	NA	NA	AT3G32930.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g41710.2	expressed protein	Medtr3g105910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5154.1.S1_s_at	A	A1TS	POPTR_0004s16570	POPTR_0004s16570 (11)	scaffold_4:17004975-17006530(+) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT4G39150.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os05g46620.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.5155.1.S1_s_at	A	A1TS	POPTR_0003s06190	POPTR_0003s06190 (11)	scaffold_3:7637122-7637283(+) (11)	NA	Q8GYL9	Protein Brevis radix-like 2	AT3G14000.2	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein 	LOC_Os08g36020.1	"Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed"	Medtr5g027200.1	Disease resistance/zinc finger/chromosome condensation-like region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5157.1.S1_a_at	A	A1TS	POPTR_0003s09410	POPTR_0003s09410 (11)	scaffold_3:10701370-10701837(+) (11)	NA	NA	NA	AT4G17720.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g50790.1	"RNA recognition motif, putative, expressed"	Medtr8g077770.1	RNA-binding region RNP-1 (RNA recognition motif); Aldo/keto reductase 	NA	GO:0003676|nucleic acid binding	NA
Ptp.5158.1.S1_at	A	A1TS	POPTR_0004s00460	POPTR_0004s00460 (11)	scaffold_4:155052-155442(-) (11)	NA	P31237	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr3g105840.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.5158.1.S1_x_at	A	A1TS	POPTR_0004s00460	POPTR_0004s00460 (11)	scaffold_4:155012-155454(-) (11)	NA	P31237	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr3g105840.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.5159.1.S1_at	A	A1TS	POPTR_0011s09200	POPTR_0011s09200 (11)	scaffold_11:11368597-11368683(-) (11)	NA	Q9FIA1	GDSL esterase/lipase At5g55050	AT5G55050.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os03g38470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g100470.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.5160.1.A1_s_at	A	A2TS	POPTR_0011s14540	POPTR_0011s14540 (11)//POPTR_0011s14550 (11)	scaffold_11:16911971-16912188(+) (11)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.5160.3.A1_x_at	A	A2TS	POPTR_0011s14540	POPTR_0011s14540 (11)//POPTR_0011s14550 (11)	scaffold_11:16910545-16912419(+) (11)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.5162.1.S1_s_at	A	A1TS	POPTR_0001s25180	POPTR_0001s25180 (11)	scaffold_1:24383663-24384542(+) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT1G07440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.5163.1.S1_s_at	A	A1TS	POPTR_0009s09240	POPTR_0009s09240 (11)	scaffold_9:8241924-8242160(-) (11)	NA	Q9XJ35	"ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic"	AT1G49970.1	CLP protease proteolytic subunit 1 	LOC_Os05g51450.1	"OsClp8 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.5163.2.S1_s_at	A	A1TA	POPTR_0002s19710	POPTR_0002s19710 (11)	scaffold_2:15653871-15654053(-) (11)	NA	A6Q0K5	Calvin cycle protein CP12	AT3G62410.1	CP12 domain-containing protein 2 	LOC_Os01g19740.1	"calvin cycle protein CP12, putative, expressed"	Medtr1g106710.1	Protein of unknown function CP12 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5164.1.A1_s_at	A	A1TS	POPTR_0019s08450	POPTR_0019s08450 (11)	scaffold_19:10001252-10002392(+) (11)	NA	Q42656	Alpha-galactosidase	AT3G56310.1	Melibiase family protein 	LOC_Os07g48160.1	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5165.1.A1_s_at	A	A1TS	POPTR_0008s05870	POPTR_0008s05870 (11)	scaffold_8:3449586-3449650(-) (11)	NA	Q7X999	"Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic"	AT2G39730.2	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.5168.1.S1_s_at	A	A1TS	POPTR_0001s13940	POPTR_0001s13940 (11)	scaffold_1:10985586-10985761(-) (11)	NA	Q9FYF7	REF/SRPP-like protein At1g67360	AT1G67360.1	Rubber elongation factor protein (REF) 	LOC_Os07g47510.1	"stress-related protein, putative, expressed"	Medtr3g103750.2	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5169.1.S1_a_at	A	A1TS	POPTR_0007s01700	POPTR_0007s01700 (11)	scaffold_7:986725-986809(+) (11)	NA	O24495	"Hydroxyacylglutathione hydrolase 1, mitochondrial"	AT2G43430.1	glyoxalase 2-1 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.517.1.S1_at	A	A1TS	POPTR_0004s02850	POPTR_0004s02850 (10)	scaffold_4:1901795-1902304(+) (10)	NA	B9M4V3	Flavoprotein wrbA	AT4G27270.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr2g096040.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.5172.1.S1_s_at	A	A1TS	POPTR_0003s16000	POPTR_0003s16000 (11)	scaffold_3:15636839-15637846(+) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G38895.2	RING/U-box superfamily protein 	LOC_Os01g70160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5173.2.S1_s_at	A	A1TS	POPTR_0019s13210	POPTR_0019s13210 (11)	scaffold_19:14170324-14170853(+) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5173.3.A1_at	A	A1TA	POPTR_0019s13210	POPTR_0019s13210 (9)	scaffold_19:14170669-14170936(-) (9)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5175.1.S1_s_at	A	A1TS	POPTR_0007s14890	POPTR_0007s14890 (11)	scaffold_7:14586557-14587028(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5182.1.S1_at	A	A1TS	POPTR_0017s06620	POPTR_0017s06620 (11)	scaffold_17:5027364-5029149(+) (11)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5183.1.S1_s_at	A	A1TS	POPTR_0014s14610	POPTR_0014s14610 (11)	scaffold_14:10675359-10676529(-) (11)	NA	P28553	"Phytoene dehydrogenase, chloroplastic/chromoplastic"	AT4G14210.1	phytoene desaturase 3 	LOC_Os03g08570.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g104320.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5184.1.A1_a_at	A	A1TS	POPTR_0008s00510	POPTR_0008s00510 (11)	scaffold_8:213717-214376(-) (11)	NA	NA	NA	AT3G20270.3	lipid-binding serum glycoprotein family protein 	LOC_Os09g32240.1	"OsFBX332 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5185.1.S1_s_at	A	A1TS	POPTR_0003s14810	POPTR_0003s14810 (11)	scaffold_3:14785773-14786756(-) (11)	NA	NA	NA	AT3G07200.2	RING/U-box superfamily protein 	LOC_Os09g32690.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5187.1.S1_s_at	A	A2TS	POPTR_0006s29440	POPTR_0018s04100 (11)//POPTR_0006s29440 (11)	scaffold_18:3492616-3497305(+) (11)//scaffold_6:26798991-26799059(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G31170.3	Protein kinase superfamily protein 	LOC_Os04g51950.1	"serine/threonine-protein kinase HT1, putative, expressed"	Medtr3g040790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5188.1.A1_at	A	A1TS	POPTR_0003s17670	POPTR_0003s17670 (11)	scaffold_3:16976872-16977891(+) (11)	NA	Q43621	"Glutathione reductase, cytosolic"	AT3G24170.3	glutathione-disulfide reductase 	LOC_Os02g56850.3	"glutathione reductase, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
Ptp.5188.1.A1_s_at	A	A1TS	POPTR_0003s17670	POPTR_0003s17670 (11)	scaffold_3:16976081-16977654(+) (11)	NA	Q43621	"Glutathione reductase, cytosolic"	AT3G24170.3	glutathione-disulfide reductase 	LOC_Os02g56850.3	"glutathione reductase, putative, expressed"	Medtr2g038690.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
Ptp.519.1.A1_at	A	A1TS	POPTR_0001s06580	POPTR_0001s06580 (11)	scaffold_1:5067533-5067624(+) (11)	NA	NA	NA	AT3G54390.1	sequence-specific DNA binding transcription factors 	LOC_Os09g38570.1	"transcription factor like protein, putative, expressed"	Medtr3g005850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5192.1.S1_at	A	A1TS	POPTR_0010s08510	POPTR_0010s08510 (11)	scaffold_10:9420852-9421136(-) (11)	NA	Q0WPQ2	Ethylene receptor 2	AT3G23150.1	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os04g08740.2	"ethylene receptor, putative, expressed"	Medtr1g093360.1	"Tripartite hybrid signal transduction histidine kinase, BarA type; Bacteriophytochrome "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.5193.1.S1_at	A	A1TS	POPTR_0001s03560	POPTR_0001s03560 (11)	scaffold_1:2850994-2852742(-) (11)	NA	NA	NA	AT1G73060.1	Low  PSII Accumulation 3 	LOC_Os02g02520.1	expressed protein	Medtr4g021740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5194.1.S1_at	A	A1TS	POPTR_0001s12230	POPTR_0001s12230 (11)	scaffold_1:9472996-9473679(-) (11)	NA	Q9SCY2	"FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplastic"	AT5G45680.1	FK506-binding protein 13 	LOC_Os06g45340.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g140460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.5196.1.S1_s_at	A	A2TS	POPTR_0021s00470	POPTR_0021s00490 (11)//POPTR_0021s00470 (11)	scaffold_21:163837-164269(+) (11)//scaffold_21:186725-187157(-) (11)	POPTR_0183s00240 (8)	Q7XA40	Putative disease resistance protein RGA3	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr3g043570.1	"Peptidase aspartic, active site; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5197.1.S1_s_at	A	A1TS	POPTR_0015s14150	POPTR_0015s14150 (11)	scaffold_15:13870845-13871271(+) (11)	NA	Q41382	DEAD-box ATP-dependent RNA helicase 7	AT5G62190.1	DEAD box RNA helicase (PRH75) 	LOC_Os09g34910.1	"DEAD-box ATP-dependent RNA helicase 7, putative, expressed"	Medtr1g130350.1	"Helicase, C-terminal; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
Ptp.5198.1.S1_at	A	A1TS	POPTR_0006s13160	POPTR_0006s13160 (11)	scaffold_6:10380387-10380741(+) (11)	NA	P0CH05	Polyubiquitin	AT5G20620.1	ubiquitin 4 	LOC_Os05g42424.1	"ubiquitin family protein, putative, expressed"	Medtr4g110760.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.52.1.S1_at	A	A1TS	POPTR_0019s05430	POPTR_0019s05430 (11)	scaffold_19:5775544-5775748(-) (11)	NA	O50008	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.5200.1.S1_at	A	A1TS	POPTR_0006s14180	POPTR_0006s14180 (11)	scaffold_6:11508822-11509332(+) (11)	NA	P13869	"Chlorophyll a-b binding protein, chloroplastic"	AT1G19150.1	photosystem I light harvesting complex gene 6 	LOC_Os09g26810.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g050060.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.5201.1.S1_at	A	A1TS	POPTR_0010s12460	POPTR_0010s12460 (11)	scaffold_10:12503059-12503842(+) (11)	NA	A9VRF5	Bifunctional purine biosynthesis protein purH	AT2G35040.1	AICARFT/IMPCHase bienzyme family protein 	LOC_Os08g10570.2	"bifunctional purine biosynthesis protein purH, putative, expressed"	Medtr5g103430.1	AICARFT/IMPCHase bienzyme; MGS-like 	GO:0044281|small molecule metabolic process||GO:0006188|IMP biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.5202.1.A1_a_at	A	A1TS	POPTR_0015s08600	POPTR_0015s08600 (11)	scaffold_15:9917680-9918135(+) (11)	NA	NA	NA	AT5G62840.1	Phosphoglycerate mutase family protein 	LOC_Os01g47190.1	"phosphoglycerate mutase, putative, expressed"	Medtr8g125430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5203.1.S1_at	A	A1TS	POPTR_0001s34760	POPTR_0001s34760 (11)	scaffold_1:33004839-33007627(-) (11)	NA	NA	NA	AT5G14910.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os05g27100.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5205.1.S1_at	A	A1TS	POPTR_0018s01390	POPTR_0018s01390 (11)	scaffold_18:1343201-1343566(+) (11)	NA	NA	NA	AT5G11420.1	"Protein of unknown function, DUF642 "	LOC_Os01g42520.1	expressed protein	Medtr1g013340.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5206.1.S1_at	A	A1TS	POPTR_0001s47210	POPTR_0001s47210 (11)	scaffold_1:47490784-47490887(+) (11)	NA	P46256	"Fructose-bisphosphate aldolase, cytoplasmic isozyme 1"	AT4G26530.2	Aldolase superfamily protein 	LOC_Os06g40640.3	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g104310.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.5206.1.S1_x_at	A	A1TS	POPTR_0001s47210	POPTR_0001s47210 (11)	scaffold_1:47490784-47491091(+) (11)	NA	P46256	"Fructose-bisphosphate aldolase, cytoplasmic isozyme 1"	AT4G26530.2	Aldolase superfamily protein 	LOC_Os06g40640.3	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g104310.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.5207.1.S1_at	A	A1TS	POPTR_0011s00640	POPTR_0011s00640 (11)	scaffold_11:289283-289968(-) (11)	NA	Q8C147	Dedicator of cytokinesis protein 8	AT4G16340.1	guanyl-nucleotide exchange factors;GTPase binding;GTP binding 	LOC_Os03g21080.1	"guanine nucleotide exchange factor, putative, expressed"	Medtr8g065690.1	Dedicator of cytokinesis 	NA	GO:0005085|guanyl-nucleotide exchange factor activity||GO:0051020|GTPase binding||GO:0005525|GTP binding	NA
Ptp.521.1.A1_at	A	A1TS	POPTR_0008s08400	POPTR_0008s08400 (10)	scaffold_8:5207324-5207357(-) (10)	NA	Q42962	"Phosphoglycerate kinase, cytosolic"	AT1G79550.2	phosphoglycerate kinase 	LOC_Os06g45710.1	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077490.2	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
Ptp.5210.1.S1_at	A	A1TS	POPTR_0008s12930	POPTR_0008s12930 (10)	scaffold_8:8419829-8421183(-) (10)	NA	Q39221	SEC12-like protein 2	AT2G01470.1	SEC12P-like 2 protein 	LOC_Os11g39650.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5212.1.A1_at	A	A1TS	POPTR_0007s12700	POPTR_0007s12700 (11)	scaffold_7:12944392-12945123(+) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	Medtr8g093530.1	Protein of unknown function DUF81 	NA	NA	GO:0016021|integral to membrane
Ptp.5214.1.S1_at	A	A1TS	POPTR_0012s10710	POPTR_0012s10710 (11)	scaffold_12:11414922-11415779(+) (11)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT4G25050.1	acyl carrier protein 4 	LOC_Os11g31900.1	"acyl carrier protein, putative, expressed"	Medtr4g152090.1	Acyl carrier protein (ACP) 	NA	GO:0048037|cofactor binding	NA
Ptp.5215.1.S1_at	A	A1TS	POPTR_0015s04880	POPTR_0015s04880 (11)	scaffold_15:5088574-5089685(-) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	Medtr6g083230.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5216.1.S1_at	A	A1TS	POPTR_0013s07700	POPTR_0013s07700 (11)	scaffold_13:6542538-6543330(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G23910.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g42620.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5216.2.S1_at	A	A1MS	POPTR_0013s07700	POPTR_0013s07700 (11)	scaffold_13:6540858-6541410(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G23910.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g42620.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5217.1.S1_at	A	A1TS	POPTR_0001s14360	POPTR_0001s14360 (11)	scaffold_1:11284380-11285576(+) (11)	NA	Q8R1S0	Ubiquinone biosynthesis monooxygenase COQ6	AT3G24200.2	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g62260.1	"FAD binding domain containing protein, expressed"	Medtr2g071190.2	Aromatic-ring hydroxylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5218.2.S1_a_at	A	A1TS	POPTR_0008s17190	POPTR_0008s17190 (11)	scaffold_8:11545981-11546168(+) (11)	NA	Q9ZUU4	"Ribonucleoprotein At2g37220, chloroplastic"	AT1G60000.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g57010.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g065570.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.522.1.S1_at	A	A1TS	POPTR_0006s00360	POPTR_0006s00360 (11)	scaffold_6:144398-145759(-) (11)	NA	P49104	Ras-related protein Rab-2-B	AT4G17170.1	RAB GTPase homolog B1C 	LOC_Os02g37420.1	"ras-related protein, putative, expressed"	Medtr2g033230.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5220.1.S1_at	A	A1MS	POPTR_0006s22210	POPTR_0006s22210 (10)	scaffold_6:21255893-21256010(-) (10)	NA	Q9SVD7	Ubiquitin-conjugating enzyme E2 variant 1D	AT3G52560.1	ubiquitin E2 variant 1D-4 	LOC_Os09g12570.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g157390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5221.1.S1_s_at	A	A1TS	POPTR_0012s10790	POPTR_0012s10790 (11)	scaffold_12:11479319-11479842(-) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os01g70270.3	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5222.1.S1_at	A	A1TS	POPTR_0018s11300	POPTR_0018s11300 (11)	scaffold_18:12107549-12107699(-) (11)	NA	Q8YNE3	Translation initiation factor IF-3	AT2G24060.1	Translation initiation factor 3 protein 	LOC_Os02g55120.1	"translation initiation factor IF-3, putative, expressed"	Medtr8g145010.1	Initiation factor 3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.5222.1.S1_s_at	A	A1TS	POPTR_0018s11300	POPTR_0018s11300 (11)	scaffold_18:12104641-12107379(-) (11)	NA	Q8YNE3	Translation initiation factor IF-3	AT2G24060.1	Translation initiation factor 3 protein 	LOC_Os02g55120.1	"translation initiation factor IF-3, putative, expressed"	Medtr8g145010.1	Initiation factor 3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.5224.1.S1_at	A	A1TS	POPTR_0004s10240	POPTR_0004s10240 (11)	scaffold_4:8792272-8793248(-) (11)	NA	Q9LS01	"Allene oxide cyclase 3, chloroplastic"	AT3G25780.1	allene oxide cyclase 3 	LOC_Os03g32314.1	"allene oxide cyclase 4, chloroplast precursor, putative, expressed"	Medtr5g069000.1	Allene oxide cyclase 	NA	GO:0016853|isomerase activity	GO:0009507|chloroplast
Ptp.5224.1.S1_x_at	A	A1TS	POPTR_0004s10240	POPTR_0004s10240 (11)	scaffold_4:8792272-8793269(-) (11)	NA	Q9LS01	"Allene oxide cyclase 3, chloroplastic"	AT3G25780.1	allene oxide cyclase 3 	LOC_Os03g32314.1	"allene oxide cyclase 4, chloroplast precursor, putative, expressed"	Medtr5g069000.1	Allene oxide cyclase 	NA	GO:0016853|isomerase activity	GO:0009507|chloroplast
Ptp.5225.1.A1_at	A	A1TS	POPTR_0006s22610	POPTR_0006s22610 (11)	scaffold_6:21573624-21574082(-) (11)	NA	NA	NA	AT3G15040.1	"Protein of unknown function, DUF584 "	LOC_Os01g64300.1	"DUF584 domain containing protein, putative, expressed"	Medtr2g107620.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5227.1.A1_at	A	A1TS	POPTR_0010s18200	POPTR_0010s18200 (11)	scaffold_10:16539224-16540150(-) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT1G79380.1	Ca(2)-dependent phospholipid-binding protein (Copine) family 	LOC_Os08g04130.1	"copine-6, putative, expressed"	Medtr6g093150.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5228.1.S1_at	A	A1TS	POPTR_0016s13540	POPTR_0016s13540 (11)	scaffold_16:12726904-12727037(+) (11)	NA	Q9SCU1	Patellin-6	AT3G51670.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os05g27820.1	"patellin protein, putative, expressed"	Medtr7g076560.1	"Patellin-5, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5229.1.S1_s_at	A	A1TS	POPTR_0007s14570	POPTR_0007s14570 (11)	scaffold_7:14319530-14319941(+) (11)	NA	Q8LF99	Probable xyloglucan endotransglucosylase/hydrolase protein 6	AT4G37800.1	xyloglucan endotransglucosylase/hydrolase 7 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g102140.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.523.1.A1_at	A	A1TS	POPTR_0010s14660	POPTR_0010s14660 (11)	scaffold_10:14190207-14190845(-) (11)	NA	P36183	Endoplasmin homolog	AT2G04030.1	Chaperone protein htpG family protein 	LOC_Os09g29840.1	"heat shock protein, putative, expressed"	Medtr5g105030.2	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
Ptp.5230.1.A1_at	A	A1TS	POPTR_0007s04870	POPTR_0007s04870 (10)	scaffold_7:3052357-3053815(-) (10)	NA	Q8LLE5	Filament-like plant protein (Fragment)	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os11g06910.2	"myosin heavy chain-related, putative, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5232.1.S1_at	A	A1TS	POPTR_0010s22790	POPTR_0010s22790 (11)	scaffold_10:19569524-19570357(+) (11)	NA	P12360	"Chlorophyll a-b binding protein 6A, chloroplastic"	AT3G54890.1	photosystem I light harvesting complex gene 1 	LOC_Os06g21590.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr4g012910.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.5237.1.S1_at	A	A1TS	POPTR_0010s17400	POPTR_0010s17400 (11)	scaffold_10:15995629-15995722(+) (11)	NA	NA	NA	AT1G14150.1	PsbQ-like 2 	LOC_Os02g36850.1	"oxygen evolving enhancer protein 3, identical, putative, expressed"	Medtr5g045040.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.5238.1.S1_s_at	A	A1TS	POPTR_0001s39570	POPTR_0001s39570 (11)	scaffold_1:38777604-38781686(-) (11)	NA	Q4V8W7	Ubiquitin domain-containing protein 1	AT1G53400.1	Ubiquitin domain-containing protein 	LOC_Os09g17620.1	"ubiquitin domain-containing protein 2, putative, expressed"	Medtr2g091650.1	"Ubiquitin domain-containing protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5239.1.S1_at	A	A1TS	POPTR_0014s08360	POPTR_0014s08360 (11)	scaffold_14:6219327-6219453(-) (11)	NA	Q9SUS5	E3 ubiquitin-protein ligase RHA1B	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.524.1.A1_at	A	A1TS	POPTR_0001s37810	POPTR_0001s37810 (11)	scaffold_1:36882342-36883333(-) (11)	NA	Q75DK1	SEC14 cytosolic factor	AT1G55840.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g10650.1	"CRAL/TRIO domain containing protein, expressed"	Medtr3g079820.2	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5240.1.S1_s_at	A	A1TS	POPTR_0008s15100	POPTR_0008s15100 (11)	scaffold_8:10092853-10092946(+) (11)	NA	P32869	"Photosystem I reaction center subunit II, chloroplastic"	AT1G03130.1	photosystem I subunit D-2 	LOC_Os08g44680.1	"photosystem I reaction center subunit II, chloroplast precursor, putative, expressed"	Medtr5g006220.1	Photosystem I protein PsaD 	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
Ptp.5241.1.S1_at	A	A1TS	POPTR_0005s23680	POPTR_0005s23680 (10)	scaffold_5:22435607-22436139(+) (10)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G03060.1	"Beige/BEACH domain ;WD domain, G-beta repeat protein "	LOC_Os03g53280.1	"WD domain containing protein, putative, expressed"	Medtr1g083680.1	Beige/BEACH; Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5242.1.S1_s_at	A	A1TS	POPTR_0003s01450	POPTR_0003s01450 (11)	scaffold_3:1341949-1342056(+) (11)	NA	P27524	"Chlorophyll a-b binding protein CP24 10A, chloroplastic"	AT1G15820.1	light harvesting complex photosystem II subunit 6 	LOC_Os04g38410.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g008680.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.5242.3.S1_s_at	A	A1TS	POPTR_0003s01450	POPTR_0003s01450 (11)	scaffold_3:1341949-1342028(+) (11)	NA	P27524	"Chlorophyll a-b binding protein CP24 10A, chloroplastic"	AT1G15820.1	light harvesting complex photosystem II subunit 6 	LOC_Os04g38410.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g008680.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.5243.1.S1_at	A	A1TS	POPTR_0014s14610	POPTR_0014s14610 (9)	scaffold_14:10682962-10683854(-) (9)	NA	P28553	"Phytoene dehydrogenase, chloroplastic/chromoplastic"	AT4G14210.1	phytoene desaturase 3 	LOC_Os03g08570.1	"amine oxidase, flavin-containing, domain containing protein, expressed"	Medtr3g104320.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5244.1.S1_s_at	A	A2TS	POPTR_0006s27170	POPTR_0006s27170 (11)//POPTR_0018s01830 (11)	scaffold_18:1663105-1663395(+) (11)//scaffold_6:25156965-25157255(+) (11)	NA	P31853	"ATP synthase subunit b', chloroplastic"	AT4G32260.1	"ATPase, F0 complex, subunit B/B', bacterial/chloroplast "	LOC_Os03g17070.1	"ATP synthase B chain, chloroplast precursor, putative, expressed"	Medtr3g137480.1	"H+-transporting two-sector ATPase, B/B subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0045263|""proton-transporting ATP synthase complex, coupling factor F(o)"""
Ptp.5244.1.S1_x_at	A	A1TS	POPTR_0006s27170	POPTR_0006s27170 (11)	scaffold_6:25156964-25157497(+) (11)	NA	P31853	"ATP synthase subunit b', chloroplastic"	AT4G32260.1	"ATPase, F0 complex, subunit B/B', bacterial/chloroplast "	LOC_Os03g17070.1	"ATP synthase B chain, chloroplast precursor, putative, expressed"	Medtr3g137480.1	"H+-transporting two-sector ATPase, B/B subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0045263|""proton-transporting ATP synthase complex, coupling factor F(o)"""
Ptp.5245.1.S1_at	A	A1TS	POPTR_0008s14230	POPTR_0008s14230 (10)	scaffold_8:9418348-9418469(+) (10)	NA	Q5REY7	UBX domain-containing protein 7	AT1G14570.1	UBX domain-containing protein 	LOC_Os04g57520.1	"UBX domain-containing protein, putative, expressed"	AC229689_1.1	UBX; UAS; Thioredoxin-like fold AC229689.5 4995-12311 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5246.1.S1_at	A	A1TS	POPTR_0013s06710	POPTR_0013s06710 (11)	scaffold_13:5420410-5423004(+) (11)	NA	O80360	"50S ribosomal protein L3, chloroplastic (Fragment)"	AT2G43030.1	Ribosomal protein L3 family protein 	LOC_Os02g04460.1	"ribosomal protein L3, putative, expressed"	Medtr3g163790.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5247.1.S1_at	A	A1TS	POPTR_0002s08410	POPTR_0002s08410 (11)	scaffold_2:5861007-5861538(+) (11)	NA	Q02060	"Photosystem II 22 kDa protein, chloroplastic"	AT1G44575.1	Chlorophyll A-B binding family protein 	LOC_Os01g64960.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr3g100820.1	Chlorophyll A-B binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5248.1.S1_at	A	A1TS	POPTR_0003s12000	POPTR_0003s12000 (11)	scaffold_3:12696600-12697141(+) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G63000.1	nucleotide-rhamnose synthase/epimerase-reductase 	LOC_Os02g45540.1	"synthase, putative, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.525.1.A1_at	A	A1TS	POPTR_0001s31180	POPTR_0001s31180 (9)	scaffold_1:29527472-29527611(+) (10)	NA	Q9SLN1	Filament-like plant protein 7	AT3G19370.3	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5250.1.S1_s_at	A	A1TS	POPTR_0010s10430	POPTR_0010s10430 (10)	scaffold_10:10943510-10943656(+) (10)	NA	NA	NA	AT1G70280.2	NHL domain-containing protein 	LOC_Os02g49770.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5251.1.S1_s_at	A	A1TS	POPTR_0005s05650	POPTR_0005s05650 (11)	scaffold_5:3716222-3718636(-) (11)	NA	P16157	Ankyrin-1	AT3G04710.3	ankyrin repeat family protein 	LOC_Os05g01310.2	"ankyrin repeat family protein, putative, expressed"	Medtr5g046490.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5252.1.S1_at	A	A1TS	POPTR_0003s09030	POPTR_0003s09030 (11)	scaffold_3:10362636-10363103(+) (11)	NA	Q93XM7	Mitochondrial carnitine/acylcarnitine carrier-like protein	AT5G46800.1	Mitochondrial substrate carrier family protein 	LOC_Os10g42299.3	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5252.2.S1_s_at	A	A2TS	POPTR_0001s02500	POPTR_0001s02500 (11)//POPTR_0003s09030 (11)	scaffold_1:1952194-1953143(-) (11)//scaffold_3:10361679-10362593(+) (11)	NA	Q93XM7	Mitochondrial carnitine/acylcarnitine carrier-like protein	AT5G46800.1	Mitochondrial substrate carrier family protein 	LOC_Os10g42299.3	"mitochondrial carrier protein, putative, expressed"	Medtr4g009080.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5254.1.S1_s_at	A	A1TS	POPTR_0008s08400	POPTR_0008s08400 (11)	scaffold_8:5207017-5207209(-) (11)	NA	Q42962	"Phosphoglycerate kinase, cytosolic"	AT1G79550.2	phosphoglycerate kinase 	LOC_Os06g45710.1	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077490.2	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
Ptp.5256.2.S1_s_at	A	A1TS	POPTR_0005s27880	POPTR_0005s27880 (11)	scaffold_5:25351149-25351461(+) (11)	NA	Q8H0U8	DEAD-box ATP-dependent RNA helicase 42	AT1G20920.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g06344.3	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr2g007080.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.5257.1.S1_at	A	A1TS	POPTR_0007s13200	POPTR_0007s13200 (10)	scaffold_7:13325674-13325953(-) (10)	NA	C6E2H7	GTP-binding protein era homolog	AT5G66470.1	RNA binding;GTP binding 	LOC_Os05g49220.2	"GTP-binding protein, putative, expressed"	Medtr5g020330.1	"GTP-binding protein, HSR1-related "	NA	GO:0003723|RNA binding||GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5258.1.S1_s_at	A	A1TS	POPTR_0001s03940	POPTR_0001s03940 (11)	scaffold_1:3138194-3138415(-) (11)	NA	Q4R5D9	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g06240.2	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5259.1.S1_at	A	A2TS	POPTR_0004s10870	POPTR_0004s10880 (11)//POPTR_0004s10870 (11)	scaffold_4:9434859-9435066(-) (11)//scaffold_4:9447124-9447332(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
Ptp.5260.1.S1_at	A	A1TS	POPTR_0001s38080	POPTR_0001s38080 (11)	scaffold_1:37118300-37118784(+) (11)	NA	Q41014	"Ferredoxin--NADP reductase, root isozyme, chloroplastic"	AT4G05390.1	root FNR 1 	LOC_Os03g57120.1	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr2g129660.1	Oxidoreductase FAD/NAD(P)-binding 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5261.1.S1_s_at	A	A1TS	POPTR_0005s26710	POPTR_0005s26710 (11)	scaffold_5:24606054-24606210(-) (11)	NA	Q39227	24-methylenesterol C-methyltransferase 2	AT1G20330.1	sterol methyltransferase 2 	LOC_Os03g04340.1	"C-methyltransferase, putative, expressed"	Medtr3g157340.1	Methyltransferase type 11 	GO:0006694|steroid biosynthetic process	GO:0008168|methyltransferase activity	NA
Ptp.5261.2.S1_a_at	A	A1TS	POPTR_0005s26710	POPTR_0005s26710 (11)	scaffold_5:24607108-24607267(-) (11)	NA	Q39227	24-methylenesterol C-methyltransferase 2	AT1G20330.1	sterol methyltransferase 2 	LOC_Os03g04340.1	"C-methyltransferase, putative, expressed"	Medtr3g157340.1	Methyltransferase type 11 	GO:0006694|steroid biosynthetic process	GO:0008168|methyltransferase activity	NA
Ptp.5262.1.S1_at	A	A1TS	POPTR_0016s03290	POPTR_0016s03290 (9)	scaffold_16:1689010-1689428(-) (9)	NA	NA	NA	AT2G40820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 203 Blast hits to 195 proteins in 64 species: Archae - 3; Bacteria - 13; Metazoa - 26; Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	LOC_Os01g59130.2	"proline-rich family protein, putative, expressed"	Medtr7g106120.1	"3'-5'-exoribonuclease/ RNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5263.1.S1_s_at	A	A1TS	POPTR_0018s05340	POPTR_0018s05340 (11)	scaffold_18:4862451-4862907(+) (11)	NA	NA	NA	AT5G07950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g11450.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5264.1.S1_s_at	A	A1TS	POPTR_0005s08050	POPTR_0005s08050 (11)	scaffold_5:5543157-5543329(-) (11)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
Ptp.5265.1.S1_s_at	A	A2TS	POPTR_0014s11710	POPTR_0852s00210 (11)//POPTR_0014s11710 (11)	scaffold_14:8681708-8682158(+) (11)//scaffold_852:6359-6813(-) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g106920.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.5265.1.S1_x_at	A	A2TS	POPTR_0014s11710	POPTR_0852s00210 (11)//POPTR_0014s11710 (11)	scaffold_14:8681534-8682302(+) (11)//scaffold_852:6215-6989(-) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g106920.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.5266.1.S1_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (11)	scaffold_13:1650610-1650759(+) (11)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5266.1.S1_s_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (11)	scaffold_13:1650755-1651310(+) (11)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5269.1.S1_a_at	A	A1TS	POPTR_0010s06350	POPTR_0010s06350 (11)	scaffold_10:7735261-7735950(-) (11)	NA	NA	NA	AT1G67700.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). "	LOC_Os02g38820.1	expressed protein	Medtr3g103060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5271.1.S1_at	A	A1TS	POPTR_0006s17930	POPTR_0006s17930 (11)	scaffold_6:16226156-16227220(+) (11)	NA	Q84RQ7	"NifU-like protein 3, chloroplastic"	AT4G25910.1	NFU domain protein 3 	LOC_Os06g47940.1	"nifU, putative, expressed"	Medtr2g041590.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
Ptp.5275.1.S1_s_at	A	A1TS	POPTR_0003s18540	POPTR_0003s18540 (11)	scaffold_3:17586099-17588804(-) (11)	NA	Q84L33	Putative DNA repair protein RAD23-1	AT1G79650.2	Rad23 UV excision repair protein family 	LOC_Os02g08300.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
Ptp.5276.1.S1_s_at	A	A3TS	POPTR_0002s12510	POPTR_0014s02500 (10)//POPTR_0014s02480 (10)//POPTR_0002s12510 (10)	scaffold_14:2073656-2073689(+) (10)//scaffold_14:2078246-2078279(+) (10)//scaffold_2:9298578-9298611(+) (10)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.5276.2.S1_at	A	A1TS	POPTR_0014s02480	POPTR_0014s02480 (11)	scaffold_14:2073904-2074025(+) (11)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.5277.1.S1_s_at	A	A1TS	POPTR_0009s14830	POPTR_0009s14830 (11)	scaffold_9:11546596-11548581(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT2G27680.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os09g39390.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5279.1.S1_at	A	A1TS	POPTR_0003s08360	POPTR_0003s08360 (10)	scaffold_3:9738350-9739677(-) (10)	NA	O23553	"Beta-amylase 3, chloroplastic"	AT4G17090.1	chloroplast beta-amylase 	LOC_Os10g41550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.5280.1.S1_at	A	A1TS	POPTR_0019s08290	POPTR_0019s08290 (11)	scaffold_19:9771168-9772678(-) (11)	NA	O04153	Calreticulin-3	AT1G08450.1	calreticulin 3 	LOC_Os05g43170.1	"calreticulin precursor protein, putative, expressed"	Medtr7g089980.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.5281.1.S1_s_at	A	A1TS	POPTR_0008s14850	POPTR_0008s14850 (9)	scaffold_8:9866994-9868087(+) (9)	NA	Q5KTS5	Glucose and ribitol dehydrogenase	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.5282.1.A1_s_at	A	A2TS	POPTR_0004s01990	POPTR_0011s00500 (11)//POPTR_0004s01990 (11)	scaffold_101:29366-29400(+) (11)//scaffold_11:216612-216646(+) (11)//scaffold_4:1268643-1268677(-) (11)	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
Ptp.5283.1.S1_s_at	A	A1TS	POPTR_0006s29130	POPTR_0006s29130 (11)	scaffold_6:26598063-26599042(+) (11)	NA	Q941D3	"Probable plastid-lipid-associated protein 8, chloroplastic"	AT5G19940.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g51792.1	"PAP fibrillin family domain containing protein, expressed"	NA	NA	NA	GO:0005198|structural molecule activity	NA
Ptp.5284.1.S1_at	A	A1TS	POPTR_0006s06680	POPTR_0006s06680 (11)	scaffold_6:4839653-4839920(+) (11)	NA	O22773	"Thylakoid lumenal 16.5 kDa protein, chloroplastic"	AT4G02530.1	chloroplast thylakoid lumen protein 	LOC_Os06g49160.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed"	Medtr8g120710.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5284.1.S1_s_at	A	A1TS	POPTR_0006s06680	POPTR_0006s06680 (11)	scaffold_6:4839951-4840858(+) (11)	NA	O22773	"Thylakoid lumenal 16.5 kDa protein, chloroplastic"	AT4G02530.1	chloroplast thylakoid lumen protein 	LOC_Os06g49160.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed"	Medtr8g120710.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5286.1.S1_at	A	A1TS	POPTR_0001s08820	POPTR_0001s08820 (9)	scaffold_1:6741128-6741658(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr8g009110.1	"Putative invertase inhibitor precursor, "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.5287.1.S1_s_at	A	A1TS	POPTR_0018s10510	POPTR_0018s10510 (11)	scaffold_18:11431787-11432385(+) (11)	NA	Q9FHH8	Zinc finger protein CONSTANS-LIKE 5	AT5G57660.1	CONSTANS-like 5 	LOC_Os06g44450.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr8g128200.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5288.1.S1_s_at	A	A1TS	POPTR_0008s01090	POPTR_0008s01090 (11)	scaffold_8:513156-513507(+) (11)	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT1G16880.1	uridylyltransferase-related 	LOC_Os08g14440.1	"uridylyltransferase-related, putative, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5289.1.S1_s_at	A	A2TS	POPTR_0010s03960	POPTR_0010s04490 (11)//POPTR_0010s03960 (11)	scaffold_10:4714883-4715356(+) (11)//scaffold_10:5594338-5594811(-) (11)	NA	Q06398	Probable glutathione S-transferase GSTU6	AT1G10370.1	Glutathione S-transferase family protein 	LOC_Os10g38140.1	"glutathione S-transferase, putative, expressed"	Medtr8g074880.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.529.1.S1_at	A	A1TS	POPTR_0003s08980	POPTR_0003s08980 (11)	scaffold_3:10265656-10266125(-) (11)	NA	P54638	Acetylornithine deacetylase	AT4G17830.1	Peptidase M20/M25/M40 family protein 	LOC_Os02g46520.1	"hydrolase, putative, expressed"	Medtr5g014590.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.5290.1.S1_at	A	A1TS	POPTR_0001s41190	POPTR_0001s41190 (11)	scaffold_1:40834979-40835619(+) (11)	NA	Q9SEU6	"Thioredoxin M4, chloroplastic"	AT3G15360.1	thioredoxin M-type 4 	LOC_Os02g42700.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.5291.1.S1_at	A	A1TS	POPTR_0005s05630	POPTR_0005s05630 (11)	scaffold_5:3709752-3709874(-) (11)	NA	NA	NA	AT1G72030.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os07g16130.1	"acetyltransferase, GNAT family, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.5293.1.S1_at	A	A1TS	POPTR_0013s05000	POPTR_0013s05000 (11)	scaffold_13:3538366-3538876(+) (11)	NA	Q9SM43	"Violaxanthin de-epoxidase, chloroplastic"	AT1G08550.2	non-photochemical quenching 1 	LOC_Os04g31040.1	"violaxanthin de-epoxidase, putative, expressed"	Medtr7g143290.1	Lipocalin-related protein and Bos/Can/Equ allergen; Calycin 	GO:0055114|oxidation reduction	GO:0046422|violaxanthin de-epoxidase activity	GO:0009507|chloroplast
Ptp.53.1.S1_at	A	A1TS	POPTR_0009s03650	POPTR_0009s03650 (10)	scaffold_9:4261340-4264379(+) (10)	NA	P48495	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.530.1.A1_at	A	A1TS	POPTR_0014s14220	POPTR_0014s14220 (11)	scaffold_14:10416491-10416525(+) (11)	NA	Q8N5U6	RING finger protein 10	AT3G26730.1	RING/U-box superfamily protein 	LOC_Os02g31150.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g097010.1	"Zinc finger, RING-type; Site-specific recombinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5302.1.S1_s_at	A	A1TS	POPTR_0011s12960	POPTR_0011s12960 (11)	scaffold_11:15657587-15658000(-) (11)	NA	NA	NA	AT2G31670.1	Stress responsive alpha-beta barrel domain protein 	LOC_Os07g41810.4	"stress responsive A/B Barrel domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5303.1.S1_s_at	A	A1TS	POPTR_0018s14290	POPTR_0018s14290 (11)	scaffold_18:14526291-14527049(+) (11)	NA	Q8LD27	Proteasome subunit beta type-6	AT4G31300.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os02g53060.1	"peptidase, T1 family, putative, expressed"	Medtr3g132980.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.5304.1.S1_at	A	A1TS	POPTR_0012s09150	POPTR_0012s09150 (9)	scaffold_12:10212919-10213269(-) (9)	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os12g27520.1	"serine/threonine-protein kinase AFC2, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5305.1.S1_at	A	A1TS	POPTR_0005s16160	POPTR_0005s16160 (11)	scaffold_5:12829179-12829749(-) (11)	NA	P42732	"30S ribosomal protein S13, chloroplastic"	AT5G14320.1	Ribosomal protein S13/S18 family 	LOC_Os03g49710.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr3g098290.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.5306.1.S1_s_at	A	A1TS	POPTR_0014s15290	POPTR_0014s15290 (11)	scaffold_14:11364676-11365095(+) (11)	NA	NA	NA	AT5G42570.1	B-cell receptor-associated 31-like 	LOC_Os05g19040.1	"prefoldin, putative, expressed"	Medtr4g064750.1	B-cell receptor-associated 31-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5308.1.S1_s_at	A	A1TS	POPTR_0010s14520	POPTR_0010s14520 (11)	scaffold_10:14088610-14089216(-) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT1G26230.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5310.1.S1_s_at	A	A2TS	POPTR_0001s16430	POPTR_0003s06880 (11)//POPTR_0001s16430 (11)	scaffold_1:13227029-13227063(-) (11)//scaffold_3:8422525-8422559(+) (11)	NA	O80377	40S ribosomal protein SA	AT1G72370.1	40s ribosomal protein SA 	LOC_Os03g08440.1	"ribosomal protein S2, putative, expressed"	AC235488_10.1	"Ribosomal protein S2, eukaryotic and archaeal form AC235488.1 35915-38592 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5311.1.S1_at	A	A1TS	POPTR_0016s04520	POPTR_0016s04520 (11)	scaffold_16:2658362-2658507(+) (11)	NA	Q8S9M1	"Probable plastid-lipid-associated protein 13, chloroplastic"	AT2G42130.4	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g57020.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5312.1.S1_at	A	A1TS	POPTR_0005s26900	POPTR_0005s26900 (11)	scaffold_5:24748821-24750426(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.5313.1.S1_s_at	A	A1TS	POPTR_0007s09770	POPTR_0007s09770 (11)	scaffold_7:9289944-9290291(+) (11)	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5314.1.S1_s_at	A	A1TS	POPTR_0007s00570	POPTR_0007s00570 (11)	scaffold_7:224913-225830(+) (11)	NA	Q39172	Probable NADP-dependent oxidoreductase P1	AT5G16970.1	alkenal reductase 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.5315.1.S1_s_at	A	A1TS	POPTR_0007s12070	POPTR_0007s12070 (11)	scaffold_7:12390303-12390494(+) (11)	NA	Q40459	"Oxygen-evolving enhancer protein 1, chloroplastic"	AT3G50820.1	photosystem II subunit O-2 	LOC_Os01g31690.1	"oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed"	AC157372_6.1	Photosystem II manganese-stabilizing protein PsbO AC157372.2 27120-29314 F EGN_Mt090430 200	GO:0042549|photosystem II stabilization	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.5317.1.S1_s_at	A	A1TS	POPTR_0001s15510	POPTR_0001s15510 (11)	scaffold_1:12346778-12347097(+) (11)	NA	Q869R9	Myb-like protein J	AT5G47390.1	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.5319.1.S1_s_at	A	A1MS	POPTR_0002s04660	POPTR_0002s04660 (11)	scaffold_2:2904376-2904879(+) (11)	NA	Q99090	Light-inducible protein CPRF2	AT4G02640.1	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.5321.1.S1_at	A	A1TS	POPTR_0001s26210	POPTR_0001s26210 (9)	scaffold_1:25281482-25281515(+) (9)	NA	P52407	"Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform"	AT4G16260.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g71400.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr4g104070.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.5321.1.S1_s_at	A	A1TS	POPTR_0001s26210	POPTR_0001s26210 (10)	scaffold_1:25281381-25281483(+) (10)	NA	P52407	"Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform"	AT4G16260.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g71400.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr4g104070.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.5323.1.S1_s_at	A	A1TS	POPTR_0006s12560	POPTR_0006s12560 (9)	scaffold_6:9707596-9708506(+) (9)	NA	Q03943	"Membrane-associated 30 kDa protein, chloroplastic"	AT1G65260.1	plastid transcriptionally active 4 	LOC_Os01g67000.1	"membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed"	Medtr4g092710.2	PspA/IM30 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5325.1.A1_at	A	A1TS	POPTR_0003s09830	POPTR_0003s09830 (11)	scaffold_3:11044832-11045179(+) (11)	NA	P26302	"Phosphoribulokinase, chloroplastic"	AT1G32060.1	phosphoribulokinase 	LOC_Os02g47020.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr5g027690.1	Phosphoribulokinase/uridine kinase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.5326.1.S1_s_at	A	A1TS	POPTR_0007s09630	POPTR_0007s09630 (11)	scaffold_7:9128789-9129462(+) (11)	NA	P10933	"Ferredoxin--NADP reductase, leaf isozyme, chloroplastic"	AT5G66190.1	ferredoxin-NADP(+)-oxidoreductase 1 	LOC_Os02g01340.2	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr5g022240.1	Oxidoreductase FAD/NAD(P)-binding 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5328.1.S1_s_at	A	A1TS	POPTR_0014s15710	POPTR_0014s15710 (11)	scaffold_14:11741794-11741948(+) (11)	NA	Q9MB94	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.5329.1.S1_s_at	A	A1TS	POPTR_0008s09630	POPTR_0008s09630 (11)	scaffold_8:5947994-5949813(-) (11)	NA	O94260	Putative G3BP-like protein	AT2G03640.2	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os03g30550.1	"RNA-binding protein-like, putative, expressed"	Medtr4g115310.1	RNA-binding region RNP-1 (RNA recognition motif); Nuclear transport factor 2 	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.5331.1.S1_at	A	A1TS	POPTR_0006s08820	POPTR_0006s08820 (9)	scaffold_6:6496374-6496514(+) (9)	NA	Q9ZNS1	40S ribosomal protein S7	AT3G02560.2	Ribosomal protein S7e family protein 	LOC_Os05g27940.1	"40S ribosomal protein S7, putative, expressed"	Medtr6g022820.1	Ribosomal protein S7E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5332.1.S1_at	A	A1TS	POPTR_0014s01760	POPTR_0014s01760 (11)	scaffold_14:1644251-1644708(+) (11)	NA	Q42430	Zinc finger protein 1	AT1G27730.1	salt tolerance zinc finger 	LOC_Os12g39400.1	"ZOS12-09 - C2H2 zinc finger protein, expressed"	Medtr1g023440.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5332.1.S1_x_at	A	A1TS	POPTR_0014s01760	POPTR_0014s01760 (11)	scaffold_14:1644206-1644717(+) (11)	NA	Q42430	Zinc finger protein 1	AT1G27730.1	salt tolerance zinc finger 	LOC_Os12g39400.1	"ZOS12-09 - C2H2 zinc finger protein, expressed"	Medtr1g023440.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5333.1.S1_at	A	A1TS	POPTR_0001s05320	POPTR_0001s05320 (11)	scaffold_1:4090385-4090837(-) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.5334.1.S1_at	A	A1TS	POPTR_0002s08280	POPTR_0002s08280 (11)	scaffold_2:5776675-5777825(+) (11)	NA	Q9SFH9	"Delta-aminolevulinic acid dehydratase, chloroplastic"	AT1G69740.2	Aldolase superfamily protein 	LOC_Os06g49110.3	"delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed"	Medtr3g100480.1	Delta-aminolevulinic acid dehydratase 	GO:0033014|tetrapyrrole biosynthetic process	GO:0004655|porphobilinogen synthase activity||GO:0046872|metal ion binding	NA
Ptp.5335.1.S1_s_at	A	A1TS	POPTR_0004s03560	POPTR_0004s03560 (11)	scaffold_4:2469719-2470170(+) (11)	NA	Q9DCD2	Pre-mRNA-splicing factor SYF1	AT5G28740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g44970.1	"XPA-binding protein 2, putative, expressed"	Medtr2g014060.1	"RNA-processing protein, HAT helix "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	GO:0005622|intracellular
Ptp.5336.1.S1_at	A	A1TS	POPTR_0008s02960	POPTR_0008s02960 (9)	scaffold_8:1541428-1541775(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5337.1.S1_at	A	A1TS	POPTR_0010s09360	POPTR_0010s09360 (9)	scaffold_10:10223618-10224812(+) (9)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5338.1.S1_s_at	A	A2TS	POPTR_0007s13400	POPTR_0007s13400 (11)//POPTR_0337s00210 (11)	scaffold_337:6129-7352(+) (11)//scaffold_7:13508651-13509887(-) (11)	NA	Q2HJ56	Periodic tryptophan protein 1 homolog	AT4G18905.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g69970.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g105580.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5338.2.S1_s_at	A	A2TS	POPTR_0007s13400	POPTR_0007s13400 (11)//POPTR_0337s00210 (11)	scaffold_337:5377-6246(+) (11)//scaffold_7:13509770-13510627(-) (11)	NA	Q2HJ56	Periodic tryptophan protein 1 homolog	AT4G18905.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g69970.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g105580.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5340.1.S1_at	A	A1TS	POPTR_0016s14970	POPTR_0016s14970 (11)	scaffold_16:14039283-14039965(-) (11)	NA	Q9M385	"50S ribosomal protein L17, chloroplastic"	AT3G54210.1	Ribosomal protein L17 family protein 	LOC_Os03g60100.1	"50S ribosomal protein L17, putative, expressed"	Medtr3g143710.1	Ribosomal protein L17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5341.1.S1_at	A	A1TS	POPTR_0010s20060	POPTR_0010s20060 (11)	scaffold_10:17812514-17813069(-) (11)	NA	O20252	"Sedoheptulose-1,7-bisphosphatase, chloroplastic"	AT3G55800.1	sedoheptulose-bisphosphatase 	LOC_Os04g16680.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr3g093130.1	"Inositol phosphatase/fructose-1,6-bisphosphatase; Glycoside hydrolase, family 5 "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
Ptp.5342.1.S1_at	A	A1TS	POPTR_0003s17000	POPTR_0003s17000 (11)	scaffold_3:16490238-16490652(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.5343.1.S1_at	A	A1TS	POPTR_0002s05330	POPTR_0002s05330 (11)	scaffold_2:3472149-3475041(-) (11)	NA	P82231	"Ribosome-recycling factor, chloroplastic"	AT3G63190.1	"ribosome recycling factor, chloroplast precursor "	LOC_Os07g38300.1	"ribosome recycling factor, putative, expressed"	Medtr1g086330.1	Ribosome recycling factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	NA	NA
Ptp.5344.1.S1_at	A	A1TS	POPTR_0008s19160	POPTR_0008s19160 (11)	scaffold_8:13127655-13128952(-) (11)	NA	P52894	Alanine aminotransferase 2	AT1G70580.4	alanine-2-oxoglutarate aminotransferase 2 	LOC_Os07g01760.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g034580.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.5345.1.S1_at	A	A1MS	POPTR_0016s02790	POPTR_0016s02790 (10)	scaffold_16:1384164-1384331(+) (10)	NA	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.5345.2.S1_s_at	A	A1TS	POPTR_0006s02950	POPTR_0006s02950 (11)	scaffold_6:1865723-1867092(+) (11)	NA	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.5346.1.S1_at	A	A1TS	POPTR_0008s10020	POPTR_0008s10020 (11)	scaffold_8:6245739-6247011(+) (11)	NA	Q9M5K2	"Dihydrolipoyl dehydrogenase 2, mitochondrial"	AT3G17240.3	lipoamide dehydrogenase 2 	LOC_Os01g22520.1	"dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed"	Medtr8g137840.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
Ptp.5347.1.S1_s_at	A	A1TS	POPTR_0002s20880	POPTR_0002s20880 (11)	scaffold_2:17106955-17107297(-) (11)	NA	P46423	Glutathione S-transferase	AT1G02930.2	glutathione S-transferase 6 	LOC_Os01g70770.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.535.2.S1_at	A	A1TS	POPTR_0002s25390	POPTR_0002s25390 (9)	scaffold_2:22466920-22467097(+) (9)	NA	Q9SZD4	26S proteasome regulatory subunit 4 homolog A	AT4G29040.1	regulatory particle AAA-ATPase 2A 	LOC_Os03g18690.1	"26S protease regulatory subunit 4, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.5350.1.S1_at	A	A1TS	POPTR_0010s07730	POPTR_0010s07730 (11)	scaffold_10:8708232-8708514(-) (11)	NA	Q9SL05	"Protein PROTON GRADIENT REGULATION 5, chloroplastic"	AT2G05620.1	proton gradient regulation 5 	LOC_Os08g45190.1	"PGR5, putative, expressed"	Medtr1g065260.1	"Protein PROTON GRADIENT REGULATION 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5351.1.S1_at	A	A1TS	POPTR_0002s16850	POPTR_0002s16850 (11)	scaffold_2:12605936-12606664(-) (11)	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G01150.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os06g15400.1	expressed protein	Medtr7g143530.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5352.1.S1_at	A	A1TS	POPTR_0003s10410	POPTR_0003s10410 (11)	scaffold_3:11409563-11410010(+) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT1G31420.2	Leucine-rich repeat protein kinase family protein 	LOC_Os03g16010.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g026640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.5353.1.S1_s_at	A	A1TS	POPTR_0001s46010	POPTR_0001s46010 (11)	scaffold_1:46524016-46524667(+) (11)	NA	NA	NA	AT3G51510.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os05g41190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5354.1.S1_at	A	A1TS	POPTR_0010s09740	POPTR_0010s09740 (11)	scaffold_10:10409798-10410319(+) (11)	NA	Q9ZQG8	"Ferredoxin-3, chloroplastic"	AT4G14890.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os03g45710.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr5g006400.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.5356.1.S1_s_at	A	A2TS	POPTR_0012s07890	POPTR_0015s08380 (11)//POPTR_0012s07890 (11)	scaffold_12:8850785-8851310(-) (11)//scaffold_15:9632932-9633474(-) (11)	NA	Q27GI3	Nucleobase-ascorbate transporter 6	AT5G62890.4	Xanthine/uracil permease family protein 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g125300.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.5357.1.S1_at	A	A1TS	POPTR_0003s07970	POPTR_0003s07970 (11)	scaffold_3:9452458-9453132(-) (11)	NA	Q05737	GTP-binding protein YPTM2	AT1G02130.1	RAS 5 	LOC_Os02g43690.1	"ras-related protein, putative, expressed"	Medtr7g093170.1	"Ras GTPase; Sigma-54 factor, interaction region "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5358.1.S1_at	A	A1TS	POPTR_0015s03420	POPTR_0015s03420 (11)	scaffold_15:2951451-2952666(-) (11)	POPTR_0012s05780 (7)	Q3U1Y4	DENN domain-containing protein 4B	AT1G49040.1	stomatal cytokinesis defective / SCD1 protein (SCD1) 	LOC_Os01g39380.1	"SCD1, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.536.1.S1_s_at	A	A1TS	POPTR_0004s19500	POPTR_0004s19500 (11)	scaffold_4:19327559-19327744(-) (11)	NA	Q9ZNU9	Zinc finger A20 and AN1 domain-containing stress-associated protein 3	AT2G27580.2	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g069850.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.5361.1.S1_s_at	A	A1TS	POPTR_0008s05950	POPTR_0008s05950 (11)	scaffold_8:3508440-3508757(+) (11)	NA	P49598	Protein phosphatase 2C 37	AT3G11410.1	protein phosphatase 2CA 	LOC_Os01g62760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5363.1.S1_at	A	A1TS	POPTR_0008s10410	POPTR_0008s10410 (9)	scaffold_8:6519368-6520325(-) (9)	NA	P52046	3-hydroxybutyryl-CoA dehydratase	AT4G16210.1	enoyl-CoA hydratase/isomerase A 	LOC_Os03g19680.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g137400.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.5364.1.S1_s_at	A	A1TS	POPTR_0004s17590	POPTR_0004s17590 (11)	scaffold_4:17728843-17729114(+) (11)	NA	NA	NA	AT4G38770.1	proline-rich protein 4 	LOC_Os10g05750.1	"POEI3 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr4g100690.1	Protein of unknown function DUF1210 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5365.3.A1_s_at	A	A1TS	POPTR_0009s12710	POPTR_0009s12710 (10)	scaffold_9:10322996-10323029(+) (10)	NA	Q944G9	"Probable fructose-bisphosphate aldolase 2, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.5368.1.S1_s_at	A	A1TS	POPTR_0003s08610	POPTR_0003s08610 (11)	scaffold_3:10024932-10025778(+) (11)	NA	NA	NA	AT1G32400.3	tobamovirus multiplication 2A 	LOC_Os08g18044.2	"tetraspanin family protein, putative, expressed"	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.537.1.S1_at	A	A1TS	POPTR_0001s36030	POPTR_0001s36030 (9)	scaffold_1:34511448-34512396(-) (9)	POPTR_0018s05510 (7)	Q9CY21	Uncharacterized methyltransferase WBSCR22	AT5G57280.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g56020.1	"methyltransferase, putative, expressed"	Medtr8g129470.1	"Uncharacterized methyltransferase WBSCR22, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.5372.2.A1_a_at	A	A1TS	POPTR_0008s13500	POPTR_0008s13500 (11)	scaffold_8:8882853-8885747(+) (11)	NA	P33324	CRAL-TRIO domain-containing protein YKL091C	AT1G14820.3	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g70210.1	"CRAL/TRIO domain containing protein, expressed"	Medtr3g151400.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5373.1.S1_s_at	A	A1TS	POPTR_0015s01000	POPTR_0015s01000 (11)	scaffold_15:579817-580460(-) (11)	NA	P40934	Cytochrome b5	AT5G53560.1	cytochrome B5 isoform E 	LOC_Os10g37420.2	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g123330.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.5374.1.A1_at	A	A1TS	POPTR_0003s19210	POPTR_0003s19210 (11)	scaffold_3:18009415-18009582(-) (11)	NA	NA	NA	AT5G07020.1	proline-rich family protein 	LOC_Os02g35090.1	expressed protein	Medtr3g005040.1	"Proline-rich family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5375.1.S1_s_at	A	A1TS	POPTR_0019s08080	POPTR_0019s08080 (11)	scaffold_19:9473832-9473875(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5376.1.S1_at	A	A1TS	POPTR_0011s11020	POPTR_0011s11020 (11)	scaffold_11:13717928-13718075(-) (11)	NA	P16273	Pathogen-related protein	AT1G78780.2	pathogenesis-related family protein 	LOC_Os01g53090.1	"pathogen-related protein, putative, expressed"	Medtr8g068150.1	"Pathogen-related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5378.1.S1_s_at	A	A1TS	POPTR_0018s10460	POPTR_0018s10460 (11)	scaffold_18:11379842-11381283(+) (11)	NA	Q9FKK7	Xylose isomerase	AT5G57655.2	xylose isomerase family protein 	LOC_Os07g47290.1	"xylose isomerase, putative, expressed"	Medtr8g128270.1	Xylose isomerase-like TIM barrel; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5379.1.S1_at	A	A1TS	POPTR_0001s40960	POPTR_0001s40960 (11)	scaffold_1:40528178-40531957(-) (11)	NA	NA	NA	AT5G53860.2	embryo defective 2737 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.538.1.S1_s_at	A	A1TS	POPTR_0008s19910	POPTR_0008s19910 (11)	scaffold_8:13759152-13760572(+) (11)	NA	NA	NA	AT3G17900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os03g05812.3	expressed protein	Medtr5g039480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5380.1.S1_at	A	A1TS	POPTR_0002s03900	POPTR_0002s03900 (11)	scaffold_2:2444559-2445059(-) (11)	NA	NA	NA	AT1G06200.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os04g01240.1	"serine-type peptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5382.1.S1_s_at	A	A1TS	POPTR_0002s10480	POPTR_0002s10480 (11)	scaffold_2:7562887-7562988(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G09750.1	Eukaryotic aspartyl protease family protein 	LOC_Os03g08790.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g149190.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5383.1.S1_at	A	A1TS	POPTR_0016s06670	POPTR_0016s06670 (11)	scaffold_16:4484201-4484425(+) (11)	NA	Q9ZT42	E3 ubiquitin-protein ligase RHF2A	AT5G22000.3	RING-H2 group F2A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5384.1.S1_s_at	A	A1TS	POPTR_0003s16760	POPTR_0003s16760 (11)	scaffold_3:16293510-16293816(+) (11)	NA	NA	NA	AT1G24265.2	Protein of unknown function (DUF1664) 	LOC_Os01g01070.2	expressed protein	Medtr7g022170.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5385.1.S1_at	A	A1TS	POPTR_0010s19580	POPTR_0010s19580 (11)	scaffold_10:17467447-17468819(+) (11)	NA	Q9GZU7	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1	AT3G55960.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g61640.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g090110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5386.1.S1_s_at	A	A1TS	POPTR_0006s14630	POPTR_0006s14630 (11)	scaffold_6:11989680-11990117(-) (11)	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
Ptp.5388.1.S1_at	A	A1TS	POPTR_0005s06870	POPTR_0005s06870 (9)	scaffold_5:4612754-4613832(-) (9)	NA	Q9FY89	Vacuolar protein sorting-associated protein 20 homolog 2	AT5G09260.1	vacuolar protein sorting-associated protein 20.2 	LOC_Os02g38300.1	"SNF7 domain containing protein, putative, expressed"	Medtr3g142880.1	Snf7 	GO:0015031|protein transport	NA	NA
Ptp.5389.1.S1_at	A	A1TS	POPTR_0015s03910	POPTR_0015s03910 (11)	scaffold_15:3829136-3829673(-) (11)	NA	P82353	Non-specific lipid-transfer protein 2	AT3G18280.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g47700.1	"LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g096400.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5389.1.S1_x_at	A	A1TS	POPTR_0015s03910	POPTR_0015s03910 (11)	scaffold_15:3829124-3829673(-) (11)	NA	P82353	Non-specific lipid-transfer protein 2	AT3G18280.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os05g47700.1	"LTPL152 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g096400.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5392.1.S1_at	A	A1TS	POPTR_0006s25990	POPTR_0006s25990 (11)	scaffold_6:24278862-24279850(-) (11)	NA	Q8LFH7	60S ribosomal protein L37-1	AT1G15250.1	Zinc-binding ribosomal protein family protein 	LOC_Os02g56990.1	"ribosomal protein L37, putative, expressed"	Medtr4g009180.1	Ribosomal protein L37e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5393.1.S1_s_at	A	A1TS	POPTR_0004s18400	POPTR_0004s18400 (11)	scaffold_4:18311964-18312515(+) (11)	NA	Q9SZN1	V-type proton ATPase subunit B2	AT4G38510.5	"ATPase, V1 complex, subunit B protein "	LOC_Os01g51380.2	"ATP synthase, putative, expressed"	Medtr7g092560.1	ATPase FliI/YscN 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.5394.1.S1_at	A	A1TS	POPTR_0005s11950	POPTR_0005s11950 (11)	scaffold_5:8721285-8721728(-) (11)	NA	Q42600	Cytochrome P450 84A1	AT4G36220.1	ferulic acid 5-hydroxylase 1 	LOC_Os10g36848.1	"cytochrome P450, putative, expressed"	Medtr5g021320.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.5399.1.S1_at	A	A1TS	POPTR_0014s07670	POPTR_0014s07670 (11)	scaffold_14:5747153-5748222(-) (11)	POPTR_0002s15870 (6)	P29675	Pollen-specific protein SF3	AT1G01780.1	GATA type zinc finger transcription factor family protein 	LOC_Os02g42820.1	"OsPLIM2a - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.540.1.S1_at	A	A1TS	POPTR_0002s25080	POPTR_0002s25080 (10)	scaffold_2:22274081-22274213(+) (10)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT3G25290.2	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr7g046190.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.540.1.S1_s_at	A	A1TS	POPTR_0002s25080	POPTR_0002s25080 (11)	scaffold_2:22274234-22274500(+) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT3G25290.2	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr7g046190.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5401.1.S1_at	A	A1TS	POPTR_0003s08740	POPTR_0003s08740 (11)	scaffold_3:10132719-10133058(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5402.1.S1_at	A	A1TS	POPTR_0013s04510	POPTR_0013s04510 (9)	scaffold_13:3097264-3097626(-) (9)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G40010.1	AAA-ATPase 1 	LOC_Os12g24320.1	"ATPase 3, putative, expressed"	Medtr2g129860.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.5403.1.S1_at	A	A1TS	POPTR_0010s19490	POPTR_0010s19490 (9)	scaffold_10:17371754-17372121(-) (9)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5404.1.S1_s_at	A	A2TS	POPTR_0004s03550	POPTR_0011s04360 (11)//POPTR_0004s03550 (11)	scaffold_11:4362201-4362681(-) (11)//scaffold_4:2460132-2460612(-) (11)	NA	Q9S9T7	Vacuolar protein sorting-associated protein 28 homolog 2	AT4G05000.2	Vacuolar protein sorting-associated protein VPS28 family protein 	LOC_Os01g57260.1	"vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed"	Medtr4g125370.1	"Vacuolar protein sorting-associated, VPS28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5407.1.S1_at	A	A1TS	POPTR_0014s04400	POPTR_0014s04400 (10)	scaffold_14:3426669-3427223(+) (10)	NA	NA	NA	AT1G02180.1	ferredoxin-related 	LOC_Os02g58740.1	expressed protein	Medtr8g009050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5408.1.S1_s_at	A	A1TS	POPTR_0005s18550	POPTR_0005s18550 (11)	scaffold_5:16802677-16803275(+) (11)	NA	Q9FGQ7	Cyclin-D3-2	AT5G67260.1	CYCLIN D3;2 	LOC_Os07g42860.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.5409.1.S1_at	A	A1TS	POPTR_0017s13530	POPTR_0017s13530 (9)	scaffold_17:13642544-13651931(+) (9)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5410.1.S1_at	A	A1TS	POPTR_0019s08100	POPTR_0019s08100 (11)	scaffold_19:9523707-9524101(+) (11)	NA	Q9FFE0	Regulator of ribonuclease-like protein 2	AT5G16450.2	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os01g52460.2	"regulator of ribonuclease, putative, expressed"	Medtr7g089680.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5410.1.S1_s_at	A	A1TS	POPTR_0019s08100	POPTR_0019s08100 (11)	scaffold_19:9523895-9524112(+) (11)	NA	Q9FFE0	Regulator of ribonuclease-like protein 2	AT5G16450.2	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os01g52460.2	"regulator of ribonuclease, putative, expressed"	Medtr7g089680.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5412.1.S1_at	A	A1TS	POPTR_0004s21050	POPTR_0004s21050 (11)	scaffold_4:20344591-20346414(+) (11)	NA	NA	NA	AT5G22280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g33290.2	expressed protein	Medtr2g107420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5413.1.S1_at	A	A1TS	POPTR_0017s00520	POPTR_0017s00520 (11)	scaffold_17:202080-202178(+) (11)	NA	O80585	Methylenetetrahydrofolate reductase 2	AT2G44160.1	methylenetetrahydrofolate reductase 2 	LOC_Os03g60090.1	"methylenetetrahydrofolate reductase, putative, expressed"	Medtr1g047280.1	Methylenetetrahydrofolate reductase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0055114|oxidation reduction||GO:0006555|methionine metabolic process||GO:0044281|small molecule metabolic process	GO:0004489|methylenetetrahydrofolate reductase (NADPH) activity	NA
Ptp.5413.1.S1_s_at	A	A1TS	POPTR_0017s00520	POPTR_0017s00520 (11)	scaffold_17:201507-202286(+) (11)	POPTR_0007s00200 (6)	O80585	Methylenetetrahydrofolate reductase 2	AT2G44160.1	methylenetetrahydrofolate reductase 2 	LOC_Os03g60090.1	"methylenetetrahydrofolate reductase, putative, expressed"	Medtr1g047280.1	Methylenetetrahydrofolate reductase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0055114|oxidation reduction||GO:0006555|methionine metabolic process||GO:0044281|small molecule metabolic process	GO:0004489|methylenetetrahydrofolate reductase (NADPH) activity	NA
Ptp.5414.1.S1_at	A	A1TS	POPTR_0010s20100	POPTR_0010s20100 (11)	scaffold_10:17836221-17837651(+) (11)	NA	P29675	Pollen-specific protein SF3	AT3G55770.5	GATA type zinc finger transcription factor family protein 	LOC_Os03g15940.1	"OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.5414.2.S1_s_at	A	A2TS	POPTR_0008s06400	POPTR_0008s06400 (11)//POPTR_0010s20100 (11)	scaffold_10:17835243-17836159(+) (11)//scaffold_8:3799043-3799982(-) (11)	NA	P29675	Pollen-specific protein SF3	AT3G55770.5	GATA type zinc finger transcription factor family protein 	LOC_Os03g15940.1	"OsWLIM2 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr3g093030.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.5415.1.S1_a_at	A	A1TS	POPTR_0006s13850	POPTR_0006s13850 (11)	scaffold_6:11033668-11035165(+) (11)	NA	Q39290	"DNA-directed RNA polymerases I, II, and III subunit RPABC5"	AT1G61700.1	RNA polymerases N / 8 kDa subunit 	LOC_Os11g08940.1	"RNA polymerases N 8 kDa subunit, putative"	Medtr5g035350.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006351|""transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.5416.1.S1_s_at	A	A1TS	POPTR_0002s25260	POPTR_0002s25260 (11)	scaffold_2:22389385-22389448(-) (11)	NA	Q9LV66	Uncharacterized protein At5g48480	AT5G48480.1	Lactoylglutathione lyase / glyoxalase I family protein 	NA	NA	Medtr7g045650.1	"early tobacco anther 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5416.2.S1_at	A	A1MS	POPTR_0002s25260	POPTR_0002s25260 (10)	scaffold_2:22389135-22389252(-) (10)	NA	Q9LV66	Uncharacterized protein At5g48480	AT5G48480.1	Lactoylglutathione lyase / glyoxalase I family protein 	NA	NA	Medtr7g045650.1	"early tobacco anther 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5417.2.S1_at	A	A1TS	POPTR_0016s12370	POPTR_0016s12370 (11)	scaffold_16:11714229-11714439(+) (11)	NA	Q39963	Probable pyridoxal biosynthesis protein PDX1	AT5G01410.1	Aldolase-type TIM barrel family protein 	LOC_Os11g48080.1	"SOR/SNZ family protein, putative, expressed"	Medtr2g021510.1	Vitamin B6 biosynthesis protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5418.1.S1_at	A	A1TS	POPTR_0018s01050	POPTR_0018s01050 (10)	scaffold_18:984680-985330(+) (10)	NA	NA	NA	AT2G25660.1	embryo defective 2410 	LOC_Os01g08420.1	"EMB2410, putative, expressed"	Medtr3g136060.1	"EMB2410, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5419.1.S1_at	A	A1TS	POPTR_0005s20370	POPTR_0005s20370 (10)	scaffold_5:19405519-19407097(-) (10)	POPTR_0002s08060 (7)//POPTR_0002s08030 (6)	P35249	Replication factor C subunit 4	AT1G21690.1	ATPase family associated with various cellular activities (AAA)  	LOC_Os12g07720.1	"RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed"	Medtr3g100710.1	"AAA ATPase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
Ptp.5420.1.S1_at	A	A1TS	POPTR_0003s12960	POPTR_0003s12960 (11)	scaffold_3:13376206-13376844(-) (11)	NA	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.5420.1.S1_s_at	A	A3TS	POPTR_0001s09600	POPTR_0743s00200 (11)//POPTR_0003s12960 (11)//POPTR_0001s09600 (11)	scaffold_1:7307641-7307947(-) (11)//scaffold_3:13376349-13376660(-) (11)//scaffold_743:1138-1444(+) (11)	NA	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.5423.1.A1_at	A	A1TS	POPTR_0002s10250	POPTR_0002s10250 (11)	scaffold_2:7353681-7354647(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G65380.1	MATE efflux family protein 	LOC_Os03g08900.1	"MATE efflux family protein, putative, expressed"	Medtr3g150100.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
Ptp.5425.1.S1_s_at	A	A1TS	POPTR_0009s09520	POPTR_0009s09520 (11)	scaffold_9:8383681-8385365(-) (11)	NA	O74503	Upstream activation factor subunit spp27	AT2G14880.1	SWIB/MDM2 domain superfamily protein 	LOC_Os12g32280.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5427.1.A1_s_at	A	A1TS	POPTR_0001s00360	POPTR_0001s00360 (11)	scaffold_1:251903-255680(+) (11)	NA	Q43199	Adenine phosphoribosyltransferase 1	AT4G12440.2	adenine phosphoribosyl transferase 4 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.5428.1.S1_at	A	A1TS	POPTR_0013s14390	POPTR_0013s14390 (11)	scaffold_13:14604068-14604154(-) (11)	NA	Q8VYN2	Vesicle-associated protein 4-2	AT4G21450.1	PapD-like superfamily protein 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
Ptp.5429.2.S1_s_at	A	A1TS	POPTR_0008s15610	POPTR_0008s15610 (11)	scaffold_8:10390007-10392096(-) (11)	NA	Q8GTE3	40S ribosomal protein S3a	AT4G34670.1	Ribosomal protein S3Ae 	LOC_Os02g18550.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5434.1.A1_at	A	A1TS	POPTR_0006s15780	POPTR_0006s15780 (11)	scaffold_6:13433256-13434116(-) (11)	NA	Q8VZU9	Derlin-1	AT4G29330.1	DERLIN-1 	LOC_Os05g09550.1	"Der1-like family domain containing protein, expressed"	Medtr4g160130.1	Der1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5435.1.A1_at	A	A1TS	POPTR_0013s09660	POPTR_0013s09660 (11)	scaffold_13:9500858-9501325(-) (11)	NA	P91924	ADP-ribosylation factor	AT5G17060.1	ADP-ribosylation factor B1B 	LOC_Os10g42940.1	"miro, putative, expressed"	Medtr4g106940.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5436.1.S1_s_at	A	A2TS	POPTR_0014s07630	POPTR_0014s07630 (11)//POPTR_0014s07610 (10)	scaffold_14:5712275-5720771(+) (11)//scaffold_14:5719754-5721011(+) (10)	NA	Q1W374	Phosphomannomutase	AT2G45790.1	phosphomannomutase 	LOC_Os04g58580.1	"phosphomannomutase, putative, expressed"	Medtr7g084420.1	Eukaryotic phosphomannomutase 	GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0019307|mannose biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004615|phosphomannomutase activity	GO:0005737|cytoplasm
Ptp.5438.1.S1_at	A	A1TS	POPTR_0017s08060	POPTR_0017s08060 (11)	scaffold_17:6464475-6465399(+) (11)	NA	O04866	"Acetylornithine aminotransferase, mitochondrial"	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.5439.1.A1_at	A	A1TS	POPTR_1554s00200	POPTR_1554s00200 (11)	scaffold_1554:1122-1561(+) (11)	POPTR_0006s03300 (6)	NA	NA	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5440.1.S1_at	A	A1TS	POPTR_0009s01630	POPTR_0009s01630 (11)	scaffold_9:2161822-2162543(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT2G28315.1	Nucleotide/sugar transporter family protein 	LOC_Os02g41780.1	"transporter-related, putative, expressed"	Medtr2g110080.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5440.2.A1_a_at	A	A1TS	POPTR_0009s01630	POPTR_0009s01630 (10)	scaffold_9:2160650-2160956(+) (10)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT2G28315.1	Nucleotide/sugar transporter family protein 	LOC_Os02g41780.1	"transporter-related, putative, expressed"	Medtr2g110080.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5441.1.S1_s_at	A	A1TS	POPTR_0003s02640	POPTR_0003s02640 (11)	scaffold_3:2741589-2741991(+) (11)	NA	Q99PV0	Pre-mRNA-processing-splicing factor 8	AT1G80070.1	Pre-mRNA-processing-splicing factor 	LOC_Os05g07050.1	"pre-mRNA-processing-splicing factor 8, putative, expressed"	Medtr2g126650.1	"Mov34/MPN/PAD-1; PRO8NT; PROCN; PRO, C-terminal "	"GO:0044260|cellular macromolecule metabolic process||GO:0000398|""nuclear mRNA splicing, via spliceosome"""	NA	GO:0005681|spliceosomal complex
Ptp.5442.1.S1_at	A	A1TS	POPTR_0001s09690	POPTR_0001s09690 (11)	scaffold_1:7409587-7410914(+) (11)	NA	NA	NA	AT1G63830.3	PLAC8 family protein 	LOC_Os03g03180.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5442.1.S1_s_at	A	A2TS	POPTR_0001s09690	POPTR_0003s13070 (11)//POPTR_0001s09690 (11)	scaffold_1:7409704-7410932(+) (11)//scaffold_3:13470904-13473161(+) (11)	NA	NA	NA	AT1G63830.3	PLAC8 family protein 	LOC_Os03g03180.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5443.1.S1_s_at	A	A2TS	POPTR_0011s01970	POPTR_0011s02000 (11)//POPTR_0011s01970 (11)	scaffold_11:1631505-1632634(-) (11)//scaffold_11:1668255-1669406(-) (11)	NA	Q41141	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta	AT1G12000.1	Phosphofructokinase family protein 	LOC_Os06g13810.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed"	Medtr8g147360.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5444.1.S1_at	A	A1TS	POPTR_0018s01420	POPTR_0018s01420 (11)	scaffold_18:1362656-1362814(+) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5444.1.S1_x_at	A	A1TS	POPTR_0018s01420	POPTR_0018s01420 (11)	scaffold_18:1362649-1362814(+) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5445.1.A1_at	A	A1TS	POPTR_0004s01820	POPTR_0004s01820 (11)	scaffold_4:1093228-1093605(-) (11)	NA	NA	NA	AT4G21780.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr8g146510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5446.1.S1_s_at	A	A1TS	POPTR_0014s13600	POPTR_0014s13600 (11)	scaffold_14:9988291-9988442(-) (11)	NA	NA	NA	AT1G52140.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g70500.1	expressed protein	Medtr7g099480.1	"disease resistance gene, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5447.1.S1_at	A	A1TS	POPTR_0005s22530	POPTR_0005s22530 (11)	scaffold_5:21454330-21456007(-) (11)	NA	NA	NA	AT3G59090.1	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication 1 (TAIR:AT4G21790.1); Has 196 Blast hits to 195 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 188; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os01g54784.1	expressed protein	Medtr4g165460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5449.2.S1_a_at	A	A1TS	POPTR_0001s13890	POPTR_0001s13890 (10)	scaffold_1:10951097-10951490(-) (10)	NA	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.545.1.S1_at	A	A1TS	POPTR_0005s17550	POPTR_0005s17550 (11)	scaffold_5:15124563-15124802(-) (11)	NA	Q8VXX9	Bet1-like protein At4g14600	AT4G14600.1	Target SNARE coiled-coil domain protein 	LOC_Os07g38990.1	expressed protein	Medtr5g074660.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5451.1.S1_at	A	A1TS	POPTR_0006s09610	POPTR_0006s09610 (10)	scaffold_6:7060346-7060385(-) (10)	NA	P18025	Tubulin beta-1 chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5451.1.S1_s_at	A	A1TS	POPTR_0006s09610	POPTR_0006s09610 (11)	scaffold_6:7059656-7060067(-) (11)	POPTR_0016s11660 (8)	P18025	Tubulin beta-1 chain	AT5G23860.2	tubulin beta 8 	LOC_Os03g01530.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr1g127110.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5452.2.S1_at	A	A1MS	POPTR_0010s15850	POPTR_0010s15850 (11)	scaffold_10:14952181-14952428(-) (11)	NA	Q1ZXH4	Transmembrane protein 93 homolog	AT5G49540.1	Rab5-interacting family protein 	LOC_Os01g49026.1	"transmembrane protein 93, putative, expressed"	Medtr2g037740.1	Protein of unknown function DUF786 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5453.1.S1_s_at	A	A1TS	POPTR_0009s02050	POPTR_0009s02050 (10)	scaffold_10:11835931-11836071(-) (9)//scaffold_8:129654-129794(-) (9)//scaffold_9:2678597-2678738(+) (10)	POPTR_0008s00360 (7)	NA	NA	AT3G45600.1	tetraspanin3 	LOC_Os05g03140.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.5457.1.S1_at	A	A1TS	POPTR_0005s10420	POPTR_0005s10420 (11)	scaffold_5:7475330-7475811(-) (11)	NA	Q5E9J1	Heterogeneous nuclear ribonucleoprotein F	AT5G66010.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g03890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g088030.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; RNA-binding region RNP-1 (RNA recognition motif) "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5458.1.S1_at	A	A1TS	POPTR_0017s01760	POPTR_0017s01760 (11)	scaffold_17:1277288-1277416(+) (11)	NA	NA	NA	AT1G65720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g34270.1	expressed protein	Medtr3g086200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5458.1.S1_s_at	A	A1MS	POPTR_0017s01760	POPTR_0017s01760 (11)	scaffold_17:1277467-1277819(+) (11)	NA	NA	NA	AT1G65720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g34270.1	expressed protein	Medtr3g086200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5459.1.S1_at	A	A1TS	POPTR_0003s20870	POPTR_0003s20870 (11)	scaffold_3:19258638-19258818(+) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5460.1.S1_at	A	A1TS	POPTR_0006s01740	POPTR_0006s01740 (11)	scaffold_6:1068587-1069194(-) (11)	NA	NA	NA	AT4G16450.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages. "	LOC_Os08g33460.1	expressed protein	Medtr2g030480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5462.1.S1_at	A	A1TS	POPTR_0019s07580	POPTR_0019s07580 (11)	scaffold_19:8647949-8649772(+) (11)	NA	NA	NA	AT1G08580.1	unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os02g39180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5464.1.S1_s_at	A	A1TS	POPTR_0016s11750	POPTR_0016s11750 (11)	scaffold_16:10933461-10933811(-) (11)	NA	Q9M392	Reticulon-like protein B12	AT3G54120.1	Reticulon family protein 	LOC_Os01g63240.1	"reticulon domain containing protein, putative, expressed"	Medtr4g012120.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.5468.2.A1_a_at	A	A1TS	POPTR_0001s34900	POPTR_0001s34900 (11)	scaffold_1:33120651-33121649(-) (11)	NA	NA	NA	AT5G59710.1	VIRE2 interacting protein 2 	LOC_Os03g52594.3	"CCR4-NOT transcription factor, putative, expressed"	Medtr2g114150.1	NOT2/NOT3/NOT5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.5469.1.S1_s_at	A	A1TS	POPTR_0002s10840	POPTR_0002s10840 (11)	scaffold_2:7869673-7870896(+) (11)	NA	Q9SXC8	Ubiquitin-fold modifier-conjugating enzyme 1	AT1G27530.1	"CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). "	LOC_Os10g13800.2	"ufm1-conjugating enzyme 1, putative, expressed"	Medtr3g127760.1	Protein of unknown function DUF1782 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5470.2.S1_at	A	A1TS	POPTR_0014s08880	POPTR_0014s08880 (10)	scaffold_14:6553333-6553397(-) (10)	NA	O49354	"Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial"	AT2G30920.1	coenzyme Q 3 	LOC_Os06g05900.1	"methyltransferase, putative, expressed"	Medtr5g099200.1	Ubiquinone biosynthesis O-methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.5470.2.S1_s_at	A	A1TS	POPTR_0014s08880	POPTR_0014s08880 (11)	scaffold_14:6551039-6553143(-) (11)	NA	O49354	"Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial"	AT2G30920.1	coenzyme Q 3 	LOC_Os06g05900.1	"methyltransferase, putative, expressed"	Medtr5g099200.1	Ubiquinone biosynthesis O-methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.5471.1.S1_s_at	A	A1TS	POPTR_0008s22310	POPTR_0008s22310 (11)	scaffold_8:16702580-16703076(-) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099870.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.5471.2.S1_at	A	A1TA	POPTR_0010s16330	POPTR_0010s16330 (9)	scaffold_10:15295877-15295969(-) (9)	NA	A9PEK8	S-adenosylmethionine synthase 3	AT1G02500.2	S-adenosylmethionine synthetase 1 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.5474.1.S1_at	A	A1TS	POPTR_0004s00800	POPTR_0004s00800 (11)	scaffold_4:365881-366014(-) (11)	NA	Q9Z2Y8	Proline synthase co-transcribed bacterial homolog protein	AT1G11930.2	"Predicted pyridoxal phosphate-dependent enzyme, YBL036C type "	LOC_Os05g05740.1	"proline synthetase co-transcribed bacterial homolog protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5478.1.S1_s_at	A	A1TS	POPTR_0004s23460	POPTR_0004s23460 (11)	scaffold_4:22180206-22180293(+) (11)	NA	Q8GWR3	KH domain-containing protein At1g09660	AT1G09660.1	RNA-binding KH domain-containing protein 	LOC_Os01g66300.1	"KH domain containing protein, putative, expressed"	Medtr2g005410.2	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.548.1.S1_at	A	A1TS	POPTR_0001s38120	POPTR_0001s38120 (9)	scaffold_1:37199853-37200121(+) (10)	NA	Q6AST1	Homeobox-leucine zipper protein HOX32	AT2G34710.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.1	"START domain containing protein, expressed"	Medtr2g129600.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.548.1.S1_x_at	A	A1TS	POPTR_0001s38120	POPTR_0001s38120 (10)	scaffold_1:37199332-37200120(+) (11)	NA	Q6AST1	Homeobox-leucine zipper protein HOX32	AT2G34710.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.1	"START domain containing protein, expressed"	Medtr2g129600.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.5480.1.S1_at	A	A1TS	POPTR_0012s09220	POPTR_0012s09220 (11)	scaffold_12:10273386-10273911(+) (11)	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5483.2.S1_a_at	A	A1TS	POPTR_0004s09860	POPTR_0004s09860 (10)	scaffold_4:8378986-8379350(-) (10)	NA	NA	NA	AT1G67080.1	abscisic acid (aba)-deficient 4 	LOC_Os01g03750.1	expressed protein	Medtr6g017810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5487.1.S1_at	A	A1TS	POPTR_0010s09630	POPTR_0010s09630 (11)	scaffold_10:10370205-10371959(+) (11)	NA	NA	NA	AT1G05430.1	unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g29514.1	expressed protein	Medtr5g006520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5488.1.S1_at	A	A1TS	POPTR_0017s08110	POPTR_0017s08110 (10)	scaffold_17:6507803-6509288(-) (10)	NA	NA	NA	AT1G15800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 56 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g137930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5489.2.A1_a_at	A	A1TS	POPTR_0016s14240	POPTR_0016s14240 (11)	scaffold_16:13495832-13496356(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G01850.1	Protein kinase superfamily protein 	LOC_Os03g60150.1	"protein kinase domain containing protein, expressed"	Medtr7g080080.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.549.1.A1_a_at	A	A1TS	POPTR_0008s13320	POPTR_0008s13320 (11)	scaffold_8:8750420-8750869(+) (11)	NA	Q9BZV1	UBX domain-containing protein 6	AT2G01650.1	plant UBX domain-containing protein 2 	LOC_Os09g23690.1	"UBX domain containing protein, expressed"	Medtr4g157470.1	"UBX; PUG; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5491.1.S1_at	A	A1TS	POPTR_0004s08600	POPTR_0004s08600 (11)	scaffold_4:7153052-7153563(-) (11)	NA	NA	NA	AT5G16720.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5491.2.S1_a_at	A	A1TS	POPTR_0004s08600	POPTR_0004s08600 (11)	scaffold_4:7153863-7154137(-) (11)	NA	NA	NA	AT5G16720.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5492.2.S1_s_at	A	A1TS	POPTR_0006s27630	POPTR_0006s27630 (11)	scaffold_6:25473010-25473171(-) (11)	NA	NA	NA	AT4G32020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5492.3.S1_s_at	A	A1TS	POPTR_0006s27630	POPTR_0006s27630 (11)	scaffold_6:25473314-25473662(-) (11)	NA	NA	NA	AT4G32020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25250.1); Has 65 Blast hits to 65 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5493.1.S1_s_at	A	A1TS	POPTR_0014s01910	POPTR_0014s01910 (9)	scaffold_14:1736923-1737385(+) (9)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.5495.1.S1_at	A	A1TS	POPTR_0003s04610	POPTR_0003s04610 (11)	scaffold_3:5472985-5475225(+) (11)	NA	Q9M7N0	Profilin-3	AT4G29340.1	profilin 4 	LOC_Os10g17680.1	"profilin domain containing protein, expressed"	Medtr4g160100.1	Plant profilin 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	GO:0015629|actin cytoskeleton
Ptp.5496.1.S1_at	A	A1TS	POPTR_0006s13320	POPTR_0006s13320 (11)	scaffold_6:10538036-10540130(+) (11)	NA	Q9Z137	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2	AT2G37090.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g17850.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr7g120990.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
Ptp.5497.1.A1_at	A	A1TS	POPTR_0004s22360	POPTR_0004s22360 (11)	scaffold_4:21292752-21292822(+) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT2G28060.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os09g20010.2	"SNF1-related protein kinase regulatory subunit beta-2, putative, expressed"	AC235487_26.1	"5-AMP-activated protein kinase, beta subunit, complex-interacting region AC235487.1 128441-124122 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5497.2.S1_s_at	A	A3TS	POPTR_0017s00310	POPTR_0017s00640 (11)//POPTR_0017s00690 (11)//POPTR_0017s00310 (11)	scaffold_17:82392-84251(+) (11)//scaffold_17:369997-371859(-) (11)//scaffold_17:389089-390935(-) (11)//scaffold_17:2661064-2662925(-) (9)	POPTR_0017s03610 (8)	Q6WAU0	(+)-pulegone reductase	AT1G26320.1	Zinc-binding dehydrogenase family protein 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.5498.1.S1_s_at	A	A1TS	POPTR_0004s16970	POPTR_0004s16970 (11)	scaffold_4:17346528-17346873(+) (11)	NA	Q54NP8	Kinesin-related protein 4	AT2G21300.2	ATP binding microtubule motor family protein 	LOC_Os02g43130.1	"kinesin motor domain containing protein, expressed"	Medtr4g097240.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.5500.1.S1_at	A	A1TS	POPTR_0006s23880	POPTR_0006s23880 (11)	scaffold_6:22606632-22607528(+) (11)	NA	Q9S7X6	Thermospermine synthase ACAULIS5	AT5G19530.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g14190.1	"spermidine synthase, putative, expressed"	Medtr5g006230.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.5502.2.S1_at	A	A1TS	POPTR_0009s05420	POPTR_0009s05420 (11)	scaffold_9:5531176-5531253(+) (11)	NA	Q9LJZ5	Ubiquitin-conjugating enzyme E2 19	AT3G20060.1	ubiquitin-conjugating enzyme19 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g103970.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.5503.1.S1_at	A	A1TS	POPTR_0012s00200	POPTR_0012s00200 (9)	scaffold_12:2702-2916(+) (9)	NA	Q9URX1	UNC93-like protein C922.05c	AT1G18010.1	Major facilitator superfamily protein 	LOC_Os04g01520.1	expressed protein	Medtr3g122110.1	"Protein of unknown function DUF895, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5504.1.S1_at	A	A1TS	POPTR_0012s04470	POPTR_0012s04470 (10)	scaffold_12:3713671-3713985(+) (10)	NA	Q9C6B8	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.2	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.5505.1.S1_at	A	A1TS	POPTR_0001s29390	POPTR_0001s29390 (11)	scaffold_1:28092138-28092838(-) (11)	NA	Q04212	D-arabinose 1-dehydrogenase	AT4G33670.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os12g29760.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g121930.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5507.1.S1_at	A	A2TS	POPTR_0014s08800	POPTR_0014s08800 (10)//POPTR_0002s16750 (9)	scaffold_14:6510764-6511882(+) (10)//scaffold_2:12515020-12516074(+) (9)	NA	Q8S8M5	Protein ABIL1	AT2G46225.1	ABI-1-like 1 	LOC_Os01g43420.1	expressed protein	Medtr7g143400.1	"Protein ABIL2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5508.1.S1_s_at	A	A1TS	POPTR_0018s09380	POPTR_0018s09380 (11)	scaffold_18:10281387-10281990(+) (11)	NA	P34105	NADP-dependent malic enzyme	AT1G79750.1	NADP-malic enzyme 4 	LOC_Os01g52500.3	"NADP-dependent malic enzyme, putative, expressed"	Medtr4g159740.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.5510.1.S1_at	A	A1TS	POPTR_0002s22290	POPTR_0002s22290 (11)	scaffold_2:18987910-18988325(+) (11)	NA	Q4KLL4	Transmembrane 9 superfamily member 4	AT4G12650.1	Endomembrane protein 70 protein family 	LOC_Os08g38820.2	"transmembrane 9 superfamily member, putative, expressed"	Medtr3g107100.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
Ptp.5513.1.S1_s_at	A	A1TS	POPTR_0010s19860	POPTR_0010s19860 (11)	scaffold_10:17646571-17646607(+) (11)	NA	O04204	60S acidic ribosomal protein P0-1	AT2G40010.1	Ribosomal protein L10 family protein 	LOC_Os08g03640.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr5g089540.1	Ribosomal protein L10; Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0042254|ribosome biogenesis||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5514.2.S1_a_at	A	A1TS	POPTR_0004s09890	POPTR_0004s09890 (11)	scaffold_4:8402739-8403031(+) (11)	NA	NA	NA	AT5G16110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5514.2.S1_at	A	A1TS	POPTR_0004s09890	POPTR_0004s09890 (11)	scaffold_4:8402150-8403227(+) (11)	NA	NA	NA	AT5G16110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5514.3.S1_a_at	A	A1TS	POPTR_0004s09890	POPTR_0004s09890 (11)	scaffold_4:8403362-8403602(+) (11)	NA	NA	NA	AT5G16110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5515.1.A1_s_at	A	A1TS	POPTR_0009s04790	POPTR_0009s04790 (11)	scaffold_9:5056737-5057244(+) (11)	NA	NA	NA	AT1G07310.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5516.1.A1_at	A	A1TS	POPTR_0003s08330	POPTR_0003s08330 (11)	scaffold_3:9717235-9718654(+) (11)	NA	Q944A9	Novel plant SNARE 11	AT2G35190.1	novel plant snare 11 	LOC_Os06g50120.2	"novel plant SNARE 11, putative, expressed"	Medtr8g134080.1	Target SNARE coiled-coil region; Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5517.1.S1_a_at	A	A1TS	POPTR_0012s14510	POPTR_0012s14510 (11)	scaffold_12:14373770-14374103(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5517.2.A1_at	A	A1TS	POPTR_0004s21180	POPTR_0004s21180 (11)	scaffold_4:20411511-20411731(-) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.5517.3.A1_at	A	A1TS	POPTR_0008s17490	POPTR_0008s17490 (10)	scaffold_8:11758820-11761972(-) (10)	NA	NA	NA	AT3G23980.1	BLISTER 	LOC_Os01g68380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5518.1.S1_s_at	A	A1TS	POPTR_0009s15160	POPTR_0009s15160 (11)	scaffold_9:11769059-11769481(+) (11)	NA	Q6V9I6	Histone deacetylase HDT1	AT3G44750.2	histone deacetylase 3 	LOC_Os05g51830.1	"ZOS5-12 - C2H2 zinc finger protein, expressed"	Medtr4g073420.1	"Histone deacetylase HDT1, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.5519.1.S1_s_at	A	A1TS	POPTR_0018s03000	POPTR_0018s03000 (11)	scaffold_18:2640387-2640960(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g48860.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.552.1.S1_at	A	A1TS	POPTR_0010s00610	POPTR_0010s00610 (11)	scaffold_10:325782-327139(-) (11)	NA	O34598	Guanine deaminase	AT5G28050.1	Cytidine/deoxycytidylate deaminase family protein 	LOC_Os03g61810.1	"tRNA-specific adenosine deaminase, putative, expressed"	Medtr8g133690.1	"CMP/dCMP deaminase, zinc-binding "	NA	GO:0016787|hydrolase activity||GO:0008270|zinc ion binding	NA
Ptp.5523.1.S1_at	A	A1TS	POPTR_0005s27440	POPTR_0005s27440 (11)	scaffold_5:25115059-25116479(-) (11)	NA	NA	NA	AT1G20770.1	unknown protein; Has 59 Blast hits to 59 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g43040.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5528.2.A1_at	A	A1TA	POPTR_0006s02230	POPTR_0006s02230 (10)	scaffold_6:1464849-1465012(+) (10)	NA	Q05462	60S ribosomal protein L27	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os10g41470.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5529.1.S1_s_at	A	A1TS	POPTR_0010s15150	POPTR_0010s15150 (11)	scaffold_10:14498239-14498590(-) (11)	NA	Q9LSP9	Chitinase-like protein 2	AT3G16920.1	chitinase-like protein 2 	LOC_Os09g32080.2	"CHIT13 - Chitinase family protein precursor, expressed"	Medtr2g038810.1	"Glycoside hydrolase, family 19 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
Ptp.5530.1.S1_at	A	A1TS	POPTR_0001s17170	POPTR_0001s17170 (10)	scaffold_1:14016959-14018750(+) (10)	NA	Q9FUZ0	"Peptide deformylase 1A, chloroplastic"	AT1G15390.1	peptide deformylase 1A 	LOC_Os01g37510.1	"peptide deformylase, putative, expressed"	Medtr2g126050.1	Formylmethionine deformylase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
Ptp.5530.1.S1_s_at	A	A1TS	POPTR_0001s17170	POPTR_0001s17170 (11)	scaffold_1:14018788-14019177(+) (11)	NA	Q9FUZ0	"Peptide deformylase 1A, chloroplastic"	AT1G15390.1	peptide deformylase 1A 	LOC_Os01g37510.1	"peptide deformylase, putative, expressed"	Medtr2g126050.1	Formylmethionine deformylase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
Ptp.5533.1.S1_at	A	A1TS	POPTR_0006s14080	POPTR_0006s14080 (11)	scaffold_6:11369103-11369385(-) (11)	NA	O65282	"20 kDa chaperonin, chloroplastic"	AT5G20720.3	chaperonin 20 	LOC_Os06g09679.2	"chaperonin, putative, expressed"	Medtr8g132830.1	GroES-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.5535.1.S1_a_at	A	A1TS	POPTR_0016s07810	POPTR_0016s07810 (10)	scaffold_16:5620868-5622627(+) (10)	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5536.1.S1_at	A	A1TS	POPTR_0010s08170	POPTR_0010s08170 (11)	scaffold_10:9114141-9114486(-) (11)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr4g135740.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5537.1.S1_at	A	A1TS	POPTR_0006s08210	POPTR_0006s08210 (11)	scaffold_6:5969258-5969647(-) (11)	NA	NA	NA	AT2G37480.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g02260.2	expressed protein	Medtr7g118380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5538.1.S1_s_at	A	A1TS	POPTR_0015s10490	POPTR_0015s10490 (11)	scaffold_15:11399151-11401345(-) (11)	NA	Q08480	Adenylate kinase B	AT5G63400.1	adenylate kinase 1 	LOC_Os11g20790.1	"adenylate kinase, putative, expressed"	Medtr8g109570.1	Adenylate kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.5539.2.S1_a_at	A	A1TS	POPTR_0011s17270	POPTR_0011s17270 (11)	scaffold_11:18855947-18856606(-) (11)	NA	Q8W206	COP9 signalosome complex subunit 6a	AT5G56280.1	COP9 signalosome subunit 6A 	LOC_Os08g39070.1	"COP9 signalosome complex subunit 6a, putative, expressed"	Medtr5g089320.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5539.3.S1_a_at	A	A1TS	POPTR_0011s17270	POPTR_0011s17270 (11)	scaffold_11:18856773-18857276(-) (11)	NA	Q8W206	COP9 signalosome complex subunit 6a	AT5G56280.1	COP9 signalosome subunit 6A 	LOC_Os08g39070.1	"COP9 signalosome complex subunit 6a, putative, expressed"	Medtr5g089320.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.554.1.S1_s_at	A	A1TS	POPTR_0012s04520	POPTR_0012s04520 (11)	scaffold_12:3815424-3815663(+) (11)	NA	P50699	Thaumatin-like protein	AT1G73620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os06g47600.1	"thaumatin family domain containing protein, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5540.1.S1_at	A	A1TS	POPTR_0006s14230	POPTR_0006s14230 (11)	scaffold_6:11541487-11541970(+) (11)	NA	NA	NA	AT1G19130.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). "	LOC_Os08g35480.1	"cupin superfamily protein, putative, expressed"	Medtr8g132610.1	"Chain G, X-Ray Crystal Structure Of Protein Q8u9w0 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5542.1.S1_s_at	A	A1TS	POPTR_0008s20800	POPTR_0008s20800 (11)	scaffold_8:14787777-14788087(-) (11)	NA	Q5R824	Carbohydrate kinase domain-containing protein	AT5G19150.2	pfkB-like carbohydrate kinase family protein 	LOC_Os11g17610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5545.1.S1_at	A	A1TS	POPTR_0016s08520	POPTR_0016s08520 (10)	scaffold_16:6330561-6330594(+) (10)	NA	Q9SF40	60S ribosomal protein L4-1	AT3G09630.1	Ribosomal protein L4/L1 family 	LOC_Os07g08330.1	"ribosomal protein L4, putative, expressed"	Medtr1g065440.1	"Ribosomal protein L4/L1e, archeabacterial like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5545.1.S1_s_at	A	A1TS	POPTR_0016s08520	POPTR_0016s08520 (11)	scaffold_16:6330614-6330740(+) (11)	NA	Q9SF40	60S ribosomal protein L4-1	AT3G09630.1	Ribosomal protein L4/L1 family 	LOC_Os07g08330.1	"ribosomal protein L4, putative, expressed"	Medtr1g065440.1	"Ribosomal protein L4/L1e, archeabacterial like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5546.1.A1_at	A	A1TS	POPTR_0014s02200	POPTR_0014s02200 (11)	scaffold_14:1879140-1879501(+) (11)	NA	Q9M7N6	MFP1 attachment factor 1	AT1G47200.1	WPP domain protein 2 	LOC_Os03g11060.1	"MFP1 attachment factor 1, putative, expressed"	Medtr1g023740.1	"MFP1 attachment factor 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5548.1.S1_s_at	A	A2TS	POPTR_0005s22200	POPTR_0005s22200 (11)//POPTR_0005s22210 (11)	scaffold_5:21161806-21162088(+) (11)//scaffold_5:21180295-21180577(+) (11)	NA	Q9SZ83	Uncharacterized oxidoreductase At4g09670	AT4G09670.1	Oxidoreductase family protein 	LOC_Os10g26400.2	"uncharacterized oxidoreductase, putative, expressed"	Medtr3g087060.1	"Oxidoreductase, N-terminal "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.5549.1.S1_s_at	A	A1TS	POPTR_0017s13350	POPTR_0017s13350 (11)	scaffold_17:13539966-13540257(+) (11)	NA	O04300	"Alpha-1,4-glucan-protein synthase [UDP-forming]"	AT5G15650.1	reversibly glycosylated polypeptide 2 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
Ptp.5550.1.S1_at	A	A1TS	POPTR_0005s18180	POPTR_0005s18180 (11)	scaffold_5:16287289-16288375(-) (11)	POPTR_0007s10970 (8)	O94432	Uncharacterized RNA-binding protein C660.15	AT4G36960.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g71770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g017210.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5552.1.S1_s_at	A	A1TS	POPTR_0014s16090	POPTR_0014s16090 (11)	scaffold_14:12163317-12163574(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5556.1.S1_at	A	A1TS	POPTR_0006s15000	POPTR_0006s15000 (11)	scaffold_6:12474192-12474565(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G26100.1	casein kinase 1 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr2g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5557.1.S1_at	A	A1TS	POPTR_0004s17920	POPTR_0004s17920 (11)	scaffold_4:17972660-17974073(+) (11)	NA	Q8LDP4	Peptidyl-prolyl cis-trans isomerase CYP19-4	AT4G34960.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g36670.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr3g093650.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.5560.1.A1_at	A	A1TS	POPTR_0016s03490	POPTR_0016s03490 (11)	scaffold_16:1865964-1866418(+) (11)	NA	Q9UNI6	Dual specificity protein phosphatase 12	AT4G18593.1	dual specificity protein phosphatase-related 	LOC_Os12g03990.1	"dual specificity protein phosphatase, putative, expressed"	Medtr7g106530.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.5561.1.A1_at	A	A1TS	POPTR_0011s04780	POPTR_0011s04780 (9)	scaffold_11:4752882-4753019(+) (9)	NA	P34914	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5563.1.S1_at	A	A1TS	POPTR_0011s15210	POPTR_0011s15210 (11)	scaffold_11:17331152-17331622(-) (11)	NA	NA	NA	AT1G63310.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20362.1); Has 78 Blast hits to 77 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5564.2.A1_a_at	A	A1TS	POPTR_0001s00850	POPTR_0001s00850 (11)	scaffold_1:707961-708220(-) (11)	NA	Q5KII2	Branchpoint-bridging protein	AT5G51300.3	splicing factor-related 	LOC_Os04g31620.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
Ptp.5566.1.S1_at	A	A1TS	POPTR_0017s01510	POPTR_0017s01510 (11)	scaffold_17:1038085-1038965(-) (11)	NA	NA	NA	AT5G37478.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os09g13650.1	"microtubule-associated protein, putative, expressed"	Medtr3g086960.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5568.1.S1_at	A	A1TS	POPTR_0002s23560	POPTR_0002s23560 (9)	scaffold_2:21115512-21115942(+) (9)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os01g68540.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr4g147330.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
Ptp.5569.1.S1_at	A	A1TS	POPTR_0016s06180	POPTR_0016s06180 (10)	scaffold_16:4129202-4129352(-) (10)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.5570.1.S1_at	A	A1TS	POPTR_0010s15180	POPTR_0010s15180 (11)	scaffold_10:14521020-14522688(-) (11)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g23620.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5571.1.S1_at	A	A1TS	POPTR_0018s11500	POPTR_0018s11500 (11)	scaffold_18:12213406-12213859(+) (11)	NA	Q9DBG7	Signal recognition particle receptor subunit alpha	AT4G30600.1	signal recognition particle receptor alpha subunit family protein 	LOC_Os08g37444.3	"signal recognition particle receptor, putative, expressed"	Medtr8g145240.1	"AAA ATPase; Signal recognition particle receptor, alpha subunit, N-terminal "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0005047|signal recognition particle binding||GO:0005515|protein binding	GO:0005785|signal recognition particle receptor complex||GO:0071212|subsynaptic reticulum
Ptp.5572.1.S1_at	A	A1TS	POPTR_0013s03710	POPTR_0013s03710 (11)	scaffold_13:2362028-2362951(+) (11)	NA	Q9SQZ9	UPF0424 protein At3g04780	AT3G04780.1	Protein of unknown function (DUF1000) 	LOC_Os03g58130.1	"thioredoxin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5572.1.S1_s_at	A	A1TS	POPTR_0013s03710	POPTR_0013s03710 (11)	scaffold_13:2362542-2364567(+) (11)	NA	Q9SQZ9	UPF0424 protein At3g04780	AT3G04780.1	Protein of unknown function (DUF1000) 	LOC_Os03g58130.1	"thioredoxin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5573.1.S1_s_at	A	A1TS	POPTR_0001s24380	POPTR_0001s24380 (10)	scaffold_1:23672482-23673795(-) (11)	NA	Q91XL3	UDP-glucuronic acid decarboxylase 1	AT3G46440.2	UDP-XYL synthase 5 	LOC_Os03g16980.2	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr2g114640.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.5577.1.S1_at	A	A1TS	POPTR_0001s16220	POPTR_0001s16220 (11)	scaffold_1:13029910-13029952(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5577.1.S1_s_at	A	A1TS	POPTR_0001s16220	POPTR_0001s16220 (11)	scaffold_1:13029799-13030063(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5577.2.S1_at	A	A1MS	POPTR_0001s16220	POPTR_0001s16220 (11)	scaffold_1:13030850-13030925(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5577.2.S1_s_at	A	A1TS	POPTR_0001s16220	POPTR_0001s16220 (11)	scaffold_1:13030200-13030364(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5579.1.A1_at	A	A1TS	POPTR_0005s18130	POPTR_0005s18130 (11)	scaffold_5:16204108-16204732(-) (11)	NA	NA	NA	AT4G33985.1	Protein of unknown function (DUF1685) 	LOC_Os02g52770.1	expressed protein	Medtr5g017390.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5580.1.S1_s_at	A	A1TS	POPTR_0001s26260	POPTR_0001s26260 (11)	scaffold_1:25319253-25322122(+) (11)	NA	B5DGI7	RNA-binding protein 8A	AT1G51510.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os05g04850.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g008930.1	"RNA-binding protein 8A, putative "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5582.1.S1_s_at	A	A1TS	POPTR_0001s37580	POPTR_0001s37580 (11)	scaffold_1:36549534-36549720(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5583.1.S1_a_at	A	A1TS	POPTR_0006s07290	POPTR_0006s07290 (11)	scaffold_6:5241737-5242007(+) (11)	NA	P60039	60S ribosomal protein L7-3	AT2G44120.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5583.2.S1_at	A	A1TS	POPTR_0006s07290	POPTR_0006s07290 (11)	scaffold_6:5242276-5242806(+) (11)	NA	P60039	60S ribosomal protein L7-3	AT2G44120.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5584.1.S1_s_at	A	A1MS	POPTR_0005s02780	POPTR_0005s02780 (10)	scaffold_5:1784377-1784884(-) (10)	NA	Q8W5S1	Cyclin-H1-1	AT5G27620.1	cyclin H;1 	LOC_Os03g52750.2	"cyclin, putative, expressed"	Medtr1g099610.1	Cyclin-like; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5586.1.S1_s_at	A	A1TS	POPTR_0017s13810	POPTR_0017s13810 (11)	scaffold_17:14036881-14038635(+) (11)	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5588.1.S1_at	A	A1TS	POPTR_0014s01920	POPTR_0014s01920 (11)	scaffold_14:1739197-1740414(-) (11)	NA	Q10170	Arginine N-methyltransferase 2	AT5G65860.1	ankyrin repeat family protein 	LOC_Os03g55330.1	"ankyrin repeat domain containing protein, putative, expressed"	AC235748_3.1	Ankyrin AC235748.1 14430-12165 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5589.1.S1_at	A	A1TS	POPTR_0014s16240	POPTR_0014s16240 (11)	scaffold_14:12329147-12330447(+) (11)	NA	A4K526	UPF0451 protein C17orf61 homolog	AT2G04900.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF423 (InterPro:IPR006696); Has 1824 Blast hits to 1824 proteins in 878 species: Archae - 0; Bacteria - 1498; Metazoa - 118; Fungi - 14; Plants - 58; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). 	LOC_Os03g53980.2	expressed protein	Medtr5g092880.1	Protein of unknown function DUF423 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.559.1.S1_s_at	A	A1TS	POPTR_0008s12800	POPTR_0008s12800 (11)	scaffold_8:8302834-8303104(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5591.1.S1_s_at	A	A1TS	POPTR_0016s05530	POPTR_0016s05530 (11)	scaffold_16:3463257-3463482(+) (11)	NA	P49688	40S ribosomal protein S2-3	AT2G41840.1	Ribosomal protein S5 family protein 	LOC_Os03g59310.1	"ribosomal protein, putative, expressed"	Medtr4g157070.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.5592.1.S1_at	A	A1TS	POPTR_0017s13840	POPTR_0017s13840 (11)	scaffold_17:14056567-14056842(+) (11)	NA	Q9SP07	14-3-3-like protein	AT3G02520.1	general regulatory factor 7 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.5594.1.S1_at	A	A3TS	POPTR_0001s14650	POPTR_0001s14660 (11)//POPTR_0001s14650 (11)//POPTR_0001s14620 (9)	scaffold_1:11469330-11469925(-) (9)//scaffold_1:11506507-11507147(-) (11)//scaffold_1:11545662-11546299(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.5595.1.S1_x_at	A	A1TS	POPTR_0005s26930	POPTR_0005s26930 (11)	scaffold_5:24773032-24773206(-) (11)	NA	P42759	Dehydrin ERD10	AT1G20450.1	Dehydrin family protein 	NA	NA	Medtr3g162880.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
Ptp.5598.1.S1_s_at	A	A1TS	POPTR_0008s15390	POPTR_0008s15390 (11)	scaffold_8:10249901-10250456(-) (11)	NA	NA	NA	AT3G22530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g07670.1	expressed protein	Medtr5g006510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5599.1.S1_at	A	A1TS	POPTR_0001s27640	POPTR_0001s27640 (11)	scaffold_1:26510942-26512337(+) (11)	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr6g093440.1	Ribosomal protein L31e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.56.1.S1_at	A	A1TS	POPTR_0009s06880	POPTR_0009s06880 (11)	scaffold_9:6554686-6555040(-) (11)	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT3G12610.1	Leucine-rich repeat (LRR) family protein 	LOC_Os08g39550.1	"polygalacturonase inhibitor 2 precursor, putative, expressed"	Medtr3g030480.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.5600.1.S1_s_at	A	A1TS	POPTR_0017s02590	POPTR_0017s02590 (11)	scaffold_17:1876956-1877480(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5601.1.S1_at	A	A1TS	POPTR_0012s09840	POPTR_0012s09840 (11)	scaffold_12:10754184-10754259(+) (11)	NA	P93447	Elongation factor 1-delta	AT2G18110.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os03g29260.2	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.5603.1.S1_at	A	A1TS	POPTR_0004s14580	POPTR_0004s14580 (9)	scaffold_4:15163944-15164046(-) (9)	NA	Q68FJ8	TOM1-like protein 2	AT5G63640.1	ENTH/VHS/GAT family protein 	LOC_Os08g01740.1	"VHS and GAT domain containing protein, expressed"	Medtr4g144470.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
Ptp.5605.1.S1_at	A	A1TS	POPTR_0010s05400	POPTR_0010s05400 (11)	scaffold_10:6858597-6859305(+) (11)	NA	Q8LPT9	"Alpha-glucan water dikinase, chloroplastic"	AT1G10760.1	"Pyruvate phosphate dikinase, PEP/pyruvate binding domain "	LOC_Os06g30310.1	"alpha-glucan water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.5607.2.S1_s_at	A	A2TS	POPTR_0002s12940	POPTR_0014s03240 (11)//POPTR_0002s12940 (11)	scaffold_14:2578799-2579254(-) (11)//scaffold_2:9615081-9615498(-) (11)	NA	Q9LT08	26S proteasome non-ATPase regulatory subunit 14	AT5G23540.1	Mov34/MPN/PAD-1 family protein 	LOC_Os05g30800.1	"26S proteasome non-ATPase regulatory subunit 14, putative, expressed"	Medtr2g021360.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5608.1.S1_s_at	A	A1TS	POPTR_0005s24660	POPTR_0005s24660 (11)	scaffold_5:23122357-23123248(+) (11)	NA	NA	NA	AT2G31140.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os04g01240.1	"serine-type peptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5609.1.S1_at	A	A1TS	POPTR_0004s23460	POPTR_0004s23460 (11)	scaffold_4:22188105-22188498(+) (11)	NA	Q8GWR3	KH domain-containing protein At1g09660	AT1G09660.1	RNA-binding KH domain-containing protein 	LOC_Os01g66300.1	"KH domain containing protein, putative, expressed"	Medtr2g005410.2	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5610.1.A1_at	A	A1TS	POPTR_0009s15070	POPTR_0009s15070 (11)	scaffold_9:11678342-11678495(-) (11)	NA	O22165	Probable ribosome biogenesis protein RLP24	AT2G44860.2	Ribosomal protein L24e family protein 	LOC_Os07g19190.1	"ribosomal protein L24, putative, expressed"	Medtr4g073290.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5612.1.S1_at	A	A1TS	POPTR_0013s05190	POPTR_0013s05190 (11)	scaffold_13:3679030-3679090(+) (11)	NA	NA	NA	AT5G32450.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g53770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g102810.1	"Aldo/keto reductase; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5612.1.S1_s_at	A	A1TS	POPTR_0013s05190	POPTR_0013s05190 (11)	scaffold_13:3678773-3679014(+) (11)	NA	NA	NA	AT5G32450.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g53770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g102810.1	"Aldo/keto reductase; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5613.1.S1_s_at	A	A1TS	POPTR_0008s09660	POPTR_0008s09660 (11)	scaffold_8:5967504-5967598(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5614.1.S1_at	A	A1TS	POPTR_0015s14490	POPTR_0015s14490 (11)	scaffold_15:14063161-14063884(+) (11)	NA	P62302	40S ribosomal protein S13	AT4G00100.1	ribosomal protein S13A 	LOC_Os08g02410.1	"40S ribosomal protein S13, putative, expressed"	Medtr4g025470.1	"S15/NS1, RNA-binding; Ribosomal S13S15 N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5617.1.S1_s_at	A	A1TS	POPTR_0004s18200	POPTR_0004s18200 (9)	scaffold_4:18174927-18175298(+) (9)	NA	Q9FHW7	SKP1-like protein 1B	AT5G42190.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 	LOC_Os09g36830.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr5g022640.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.5617.2.S1_a_at	A	A1TS	POPTR_0004s18200	POPTR_0004s18200 (11)	scaffold_4:18174048-18174294(+) (11)	NA	Q9FHW7	SKP1-like protein 1B	AT5G42190.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 	LOC_Os09g36830.1	"Skp1 family, dimerisation domain containing protein, expressed"	Medtr5g022640.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.562.1.S1_at	A	A1TS	POPTR_0015s00290	POPTR_0015s00290 (9)	scaffold_15:138892-139581(-) (9)	NA	NA	NA	AT5G24650.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os04g33220.1	"SAM domain family protein, expressed"	Medtr3g122010.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22; Sterile alpha motif homology "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.5620.1.S1_s_at	A	A2TS	POPTR_0019s00780	POPTR_0895s00200 (11)//POPTR_0019s00780 (11)	scaffold_19:523483-523692(-) (11)//scaffold_895:2708-2917(-) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5621.1.S1_s_at	A	A1TS	POPTR_0014s05220	POPTR_0014s05220 (11)	scaffold_14:3969739-3970333(+) (11)	NA	P17093	40S ribosomal protein S11	AT5G23740.1	ribosomal protein S11-beta 	LOC_Os04g42380.1	"ribosomal protein S17, putative, expressed"	Medtr8g092770.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5622.1.S1_at	A	A1TS	POPTR_0004s08370	POPTR_0004s08370 (11)	scaffold_4:6901723-6902479(-) (11)	NA	Q9FUL4	60S ribosomal protein L24	AT2G36620.1	ribosomal protein L24 	LOC_Os05g40820.1	"ribosomal protein L24, putative, expressed"	Medtr1g073730.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5623.1.S1_at	A	A1TS	POPTR_0006s12510	POPTR_0006s12510 (11)	scaffold_6:9658401-9658599(-) (11)	NA	A9PHC5	S-adenosylmethionine synthase 4	AT2G36880.2	methionine adenosyltransferase 3 	LOC_Os01g18860.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.5625.1.S1_s_at	A	A1TS	POPTR_0004s23510	POPTR_0004s23510 (10)	scaffold_4:22208634-22213124(+) (11)	NA	O04486	Ras-related protein RABA2a	AT1G09630.1	RAB GTPase 11C 	LOC_Os05g01480.1	"ras-related protein, putative, expressed"	Medtr2g005340.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5627.1.S1_at	A	A1TS	POPTR_0008s05190	POPTR_0008s05190 (11)	scaffold_8:3005123-3005212(-) (11)	NA	Q9AT34	40S ribosomal protein S15a	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5628.2.S1_at	A	A1TA	POPTR_0017s05660	POPTR_0017s05660 (11)	scaffold_17:4435413-4435643(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g111350.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5629.1.S1_s_at	A	A1TS	POPTR_0014s05180	POPTR_0014s05180 (11)	scaffold_14:3949532-3950160(-) (11)	NA	NA	NA	AT2G44670.1	Protein of unknown function (DUF581) 	LOC_Os04g49620.1	"DUF581 domain containing protein, expressed"	Medtr8g008600.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5630.1.S1_at	A	A1TS	POPTR_0001s37610	POPTR_0001s37610 (11)	scaffold_1:36578375-36580777(+) (11)	NA	P35659	Protein DEK	AT4G26630.2	DEK domain-containing chromatin associated protein 	LOC_Os03g40010.1	"DEK C terminal domain containing protein, expressed"	Medtr5g103320.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5631.1.S1_at	A	A1TS	POPTR_0011s08980	POPTR_0011s08980 (11)	scaffold_11:11020166-11020660(-) (11)	NA	NA	NA	AT1G29980.1	"Protein of unknown function, DUF642 "	LOC_Os01g55190.1	expressed protein	Medtr2g024780.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5632.1.S1_s_at	A	A1TS	POPTR_0006s14400	POPTR_0006s14400 (11)	scaffold_6:11765149-11765642(+) (11)	NA	Q8RWQ9	Thiol protease aleurain-like	AT3G45310.1	Cysteine proteinases superfamily protein 	LOC_Os09g27030.2	"oryzain gamma chain precursor, putative, expressed"	Medtr4g109600.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.5632.3.S1_s_at	A	A1TS	POPTR_0006s14400	POPTR_0006s14400 (11)	scaffold_6:11763702-11763893(+) (11)	NA	Q8RWQ9	Thiol protease aleurain-like	AT3G45310.1	Cysteine proteinases superfamily protein 	LOC_Os09g27030.2	"oryzain gamma chain precursor, putative, expressed"	Medtr4g109600.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.5633.1.S1_at	A	A1TS	POPTR_0010s09330	POPTR_0010s09330 (11)	scaffold_10:10188117-10188194(+) (11)	NA	Q8GTE3	40S ribosomal protein S3a	AT3G04840.1	Ribosomal protein S3Ae 	LOC_Os12g21798.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5633.1.S1_s_at	A	A1TS	POPTR_0010s09330	POPTR_0010s09330 (11)	scaffold_10:10188694-10189291(+) (11)	NA	Q8GTE3	40S ribosomal protein S3a	AT3G04840.1	Ribosomal protein S3Ae 	LOC_Os12g21798.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5633.1.S1_x_at	A	A1TS	POPTR_0010s09330	POPTR_0010s09330 (11)	scaffold_10:10188118-10189319(+) (11)	NA	Q8GTE3	40S ribosomal protein S3a	AT3G04840.1	Ribosomal protein S3Ae 	LOC_Os12g21798.1	"40S ribosomal protein S3a, putative, expressed"	Medtr5g006570.1	Ribosomal protein S3Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5635.1.S1_s_at	A	A1TS	POPTR_0015s05710	POPTR_0015s05710 (11)	scaffold_15:6055992-6056070(+) (11)	NA	Q9SH59	Reticulon-like protein B3	AT1G64090.1	Reticulan like protein B3 	LOC_Os05g45050.2	"reticulon domain containing protein, putative, expressed"	Medtr1g126140.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.5636.1.S1_at	A	A1TS	POPTR_0005s25620	POPTR_0005s25620 (9)	scaffold_5:23851102-23851520(-) (9)	NA	O23052	Uncharacterized TPR repeat-containing protein At1g05150	AT1G05150.1	Calcium-binding tetratricopeptide family protein 	LOC_Os03g15740.1	"uncharacterized TPR repeat-containing protein, putative, expressed"	Medtr1g065540.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; "	NA	GO:0008270|zinc ion binding	NA
Ptp.5638.1.S1_at	A	A1TS	POPTR_0005s27280	POPTR_0005s27280 (10)	scaffold_5:24992029-24992889(-) (10)	NA	Q9SFW6	Cyclin-B2-4	AT1G76310.1	CYCLIN B2;4 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.5639.1.S1_at	A	A1TS	POPTR_0001s12880	POPTR_0001s12880 (11)	scaffold_1:9999582-10000457(+) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G38895.2	RING/U-box superfamily protein 	LOC_Os01g70160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.564.1.A1_at	A	A1TS	POPTR_0017s05720	POPTR_0017s05720 (11)	scaffold_17:4471941-4472080(-) (11)	NA	Q6GN58	Protein YIF1B-A	AT1G30890.2	Integral membrane HRF1 family protein 	LOC_Os04g08320.1	"YIF1B, putative, expressed"	Medtr7g020670.1	Hrf1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5640.1.S1_at	A	A1TS	POPTR_0001s36800	POPTR_0001s36800 (11)	scaffold_1:35538077-35539576(+) (11)	NA	NA	NA	AT2G34680.1	Outer arm dynein light chain 1 protein 	LOC_Os07g05470.1	"AIR9 protein, putative, expressed"	Medtr2g055450.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
Ptp.5642.1.S1_s_at	A	A1TS	POPTR_0011s02660	POPTR_0011s02660 (11)	scaffold_11:2575381-2575421(+) (11)	NA	P19950	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os02g06700.2	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5643.1.S1_a_at	A	A1TS	POPTR_0012s03600	POPTR_0012s03600 (11)	scaffold_12:2834386-2834548(+) (11)	NA	Q9WY68	Putative 1-aminocyclopropane-1-carboxylate deaminase	AT1G48420.1	D-cysteine desulfhydrase 	LOC_Os02g53330.2	"1-aminocyclopropane-1-carboxylate deaminase, putative, expressed"	Medtr4g154480.1	Pyridoxal phosphate-dependent deaminase 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.5643.1.S1_s_at	A	A1TS	POPTR_0012s03600	POPTR_0012s03600 (11)	scaffold_12:2833159-2833850(+) (11)	NA	Q9WY68	Putative 1-aminocyclopropane-1-carboxylate deaminase	AT1G48420.1	D-cysteine desulfhydrase 	LOC_Os02g53330.2	"1-aminocyclopropane-1-carboxylate deaminase, putative, expressed"	Medtr4g154480.1	Pyridoxal phosphate-dependent deaminase 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.5643.2.S1_at	A	A1TS	POPTR_0012s03600	POPTR_0012s03600 (10)	scaffold_12:2834725-2834971(+) (10)	NA	Q9WY68	Putative 1-aminocyclopropane-1-carboxylate deaminase	AT1G48420.1	D-cysteine desulfhydrase 	LOC_Os02g53330.2	"1-aminocyclopropane-1-carboxylate deaminase, putative, expressed"	Medtr4g154480.1	Pyridoxal phosphate-dependent deaminase 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.5645.1.S1_s_at	A	A1TS	POPTR_0001s01350	POPTR_0001s01350 (9)	scaffold_1:994015-994416(+) (9)	NA	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	AC235094_22.2	Ribosomal protein L13e AC235094.1 123915-120635 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5645.2.A1_at	A	A2TA	POPTR_0001s01350	POPTR_0001s01350 (11)//POPTR_0013s02860 (10)	scaffold_1:991996-993064(-) (11)//scaffold_13:1731965-1732740(-) (10)	POPTR_0003s10180 (7)//POPTR_0016s08310 (6)	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	AC235094_22.2	Ribosomal protein L13e AC235094.1 123915-120635 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5645.3.A1_a_at	A	A1TS	POPTR_0001s01350	POPTR_0001s01350 (9)	scaffold_1:993832-993864(+) (9)	NA	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	AC235094_22.2	Ribosomal protein L13e AC235094.1 123915-120635 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5646.1.S1_at	A	A1TS	POPTR_0008s07760	POPTR_0008s07760 (10)	scaffold_8:4761725-4761846(-) (10)	NA	NA	NA	AT5G16250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g41900.1	expressed protein	Medtr7g090170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5646.1.S1_s_at	A	A1TS	POPTR_0008s07760	POPTR_0008s07760 (11)	scaffold_8:4761321-4761418(-) (11)	NA	NA	NA	AT5G16250.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g41900.1	expressed protein	Medtr7g090170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5648.1.A1_at	A	A1TS	POPTR_0001s19190	POPTR_0001s19190 (11)	scaffold_1:16651353-16651784(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.5648.2.S1_at	A	A1TS	POPTR_0001s19190	POPTR_0001s19190 (11)	scaffold_1:16654326-16655485(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.5649.1.S1_at	A	A1TS	POPTR_0012s11870	POPTR_0012s11870 (11)	scaffold_12:12232168-12233751(-) (11)	NA	Q6PGS5	Transmembrane protein 56-B	AT1G31300.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os03g46410.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
Ptp.565.1.S1_at	A	A1TS	POPTR_0001s00940	POPTR_0001s00940 (11)	scaffold_1:767681-768052(+) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT1G31650.1	RHO guanyl-nucleotide exchange factor 14 	LOC_Os02g47420.3	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr5g026080.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
Ptp.5650.1.S1_s_at	A	A1TS	POPTR_0017s08170	POPTR_0017s08170 (11)	scaffold_17:6632040-6632172(+) (11)	NA	Q9FKC0	60S ribosomal protein L13a-4	AT5G48760.2	Ribosomal protein L13 family protein 	LOC_Os03g54890.1	"ribosomal protein L13, putative, expressed"	Medtr5g091220.1	"Ribosomal protein L13, archea and eukaryotic form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5651.1.S1_s_at	A	A2TS	POPTR_0006s03390	POPTR_0006s03390 (11)//POPTR_0016s03300 (11)	scaffold_16:1703416-1703495(+) (11)//scaffold_6:2161325-2161404(+) (11)	NA	Q43697	Tubulin beta-5 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5653.1.S1_at	A	A1TS	POPTR_0016s05970	POPTR_0016s05970 (10)	scaffold_16:3902005-3902899(-) (10)	NA	Q9M2P4	E3 ubiquitin-protein ligase SINAT2	AT3G58040.1	seven in absentia of Arabidopsis 2 	LOC_Os05g14860.1	"seven in absentia protein family domain containing protein, expressed"	Medtr7g112270.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
Ptp.5654.1.S1_s_at	A	A1TS	POPTR_0003s17450	POPTR_0003s17450 (11)	scaffold_3:16782187-16782228(-) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5655.1.S1_at	A	A1TS	POPTR_0005s10350	POPTR_0005s10350 (9)	scaffold_5:7424234-7425906(+) (9)	NA	A1L244	Phosphatidylinositide phosphatase SAC1-A	AT3G51460.1	Phosphoinositide phosphatase family protein 	LOC_Os02g34884.1	"SacI homology domain containing protein, expressed"	Medtr5g023860.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5656.1.S1_s_at	A	A1TS	POPTR_0010s08670	POPTR_0010s08670 (10)	scaffold_10:9561170-9562351(+) (11)	NA	NA	NA	AT3G23090.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5657.1.S1_s_at	A	A1TS	POPTR_0002s25480	POPTR_0002s25480 (11)	scaffold_2:22555000-22555172(+) (11)	NA	NA	NA	AT2G20230.1	Tetraspanin family protein 	LOC_Os06g51480.1	expressed protein	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.5658.1.S1_at	A	A1TS	POPTR_0014s12340	POPTR_0014s12340 (11)	scaffold_14:9116319-9116430(-) (11)	NA	Q9M9W1	60S ribosomal protein L22-2	AT3G05560.3	Ribosomal L22e protein family 	LOC_Os07g47710.1	"60S ribosomal protein L22-2, putative, expressed"	Medtr1g108350.1	Ribosomal L22e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5658.1.S1_x_at	A	A1TS	POPTR_0014s12340	POPTR_0014s12340 (11)	scaffold_14:9116319-9117513(-) (11)	NA	Q9M9W1	60S ribosomal protein L22-2	AT3G05560.3	Ribosomal L22e protein family 	LOC_Os07g47710.1	"60S ribosomal protein L22-2, putative, expressed"	Medtr1g108350.1	Ribosomal L22e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5659.1.S1_at	A	A1TS	POPTR_0004s13630	POPTR_0004s13630 (10)	scaffold_4:13984078-13986313(-) (10)	NA	O64702	High mobility group B protein 14	AT2G34450.1	HMG-box (high mobility group) DNA-binding family protein 	LOC_Os01g47600.1	"HMG1/2, putative, expressed"	Medtr4g165590.1	High mobility group box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.566.1.A1_at	A	A1TS	POPTR_0008s20230	POPTR_0008s20230 (11)	scaffold_8:14007922-14008237(-) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G18900.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g41010.1	"oxidoreductase, putative, expressed"	Medtr2g025880.2	Metridin-like ShK toxin; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.5661.1.S1_at	A	A1TS	POPTR_0014s05900	POPTR_0014s05900 (10)	scaffold_14:4402782-4404732(+) (10)	NA	P73548	Phosphatidate cytidylyltransferase	AT2G45150.2	cytidinediphosphate diacylglycerol synthase 4 	LOC_Os02g03460.1	"phosphatidate cytidylyltransferase, putative, expressed"	NA	NA	NA	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	GO:0016020|membrane
Ptp.5662.1.S1_s_at	A	A1TS	POPTR_0001s33490	POPTR_0001s33490 (11)	scaffold_1:31688261-31688730(-) (11)	NA	Q6R3K6	Probable metal-nicotianamine transporter YSL6	AT3G27020.1	YELLOW STRIPE like 6 	LOC_Os04g32050.1	"transposon protein, putative, unclassified, expressed"	Medtr7g018260.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5663.1.S1_at	A	A1TS	POPTR_0013s05700	POPTR_0013s05700 (11)	scaffold_13:4106338-4106494(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os05g40980.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5663.1.S1_s_at	A	A1TS	POPTR_0013s05700	POPTR_0013s05700 (11)	scaffold_13:4105988-4106211(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os05g40980.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5664.1.S1_at	A	A1TS	POPTR_0011s13370	POPTR_0011s13370 (9)	scaffold_11:16130186-16130276(-) (11)	NA	Q9LHQ7	mRNA cap guanine-N7 methyltransferase 1	AT3G20650.1	mRNA capping enzyme family protein 	LOC_Os08g08200.1	"mRNA cap guanine-N7 methyltransferase 1, putative, expressed"	Medtr7g133520.1	"mRNA capping enzyme, large subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0008168|methyltransferase activity	NA
Ptp.5665.1.S1_s_at	A	A1TS	POPTR_0006s10090	POPTR_0006s10090 (11)	scaffold_6:7504125-7506037(-) (11)	NA	NA	NA	AT5G01470.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g61140.1	expressed protein	Medtr4g008870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5666.1.S1_s_at	A	A1TS	POPTR_0016s02040	POPTR_0016s02040 (11)	scaffold_16:975755-975943(-) (11)	NA	Q05462	60S ribosomal protein L27	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os10g41470.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5666.2.S1_at	A	A1TS	POPTR_0016s02040	POPTR_0016s02040 (9)	scaffold_16:976063-976121(-) (9)	NA	Q05462	60S ribosomal protein L27	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os10g41470.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5669.1.S1_at	A	A1TS	POPTR_0002s21450	POPTR_0002s21450 (11)	scaffold_2:17957001-17957336(+) (11)	NA	NA	NA	AT2G32580.1	Protein of unknown function (DUF1068) 	LOC_Os03g56610.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.567.1.S1_at	A	A1TS	POPTR_0014s17010	POPTR_0014s17010 (9)	scaffold_14:13202483-13202990(+) (9)	NA	Q8LPQ9	Flowering time control protein FPA	AT4G12640.1	RNA recognition motif (RRM)-containing protein 	LOC_Os09g12730.2	"RNA recognition motif containing protein, expressed"	Medtr3g111300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5670.1.S1_s_at	A	A1TS	POPTR_0005s18960	POPTR_0005s18960 (11)	scaffold_5:17455757-17456584(+) (11)	POPTR_0007s09950 (7)	P28523	Casein kinase II subunit alpha	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5672.1.S1_at	A	A1TS	POPTR_0018s11900	POPTR_0018s11900 (11)	scaffold_18:12560455-12563267(+) (11)	NA	Q9ZRD6	VAMP-like protein YKT61	AT5G58060.1	SNARE-like superfamily protein 	LOC_Os01g73300.1	"VAMP-like protein YKT62, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.5673.1.S1_at	A	A1TS	POPTR_0003s03250	POPTR_0003s03250 (11)	scaffold_3:3658884-3659409(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.4	casein kinase II  beta chain 1 	LOC_Os10g41520.1	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.5674.2.S1_s_at	A	A1TS	POPTR_0014s01740	POPTR_0014s01740 (11)	scaffold_14:1631137-1632571(-) (11)	NA	P31166	"Adenine phosphoribosyltransferase 1, chloroplastic"	AT1G27450.1	adenine phosphoribosyl transferase 1 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.5678.1.S1_a_at	A	A1TS	POPTR_0016s13030	POPTR_0016s13030 (11)	scaffold_12:11586688-11586748(+) (11)//scaffold_12:11601251-11601311(-) (11)//scaffold_16:12312749-12312809(-) (11)//scaffold_16:12348657-12348717(-) (11)	NA	NA	NA	AT3G08880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). 	NA	NA	Medtr1g126870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5678.1.S1_at	A	A1TS	POPTR_0016s13030	POPTR_0016s13030 (11)	scaffold_12:11586226-11586694(+) (9)//scaffold_16:12312803-12313278(-) (10)//scaffold_16:12348711-12349185(-) (11)	POPTR_0012s10910 (8)	NA	NA	AT3G08880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01570.1); Has 177 Blast hits to 175 proteins in 60 species: Archae - 4; Bacteria - 33; Metazoa - 18; Fungi - 11; Plants - 59; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). 	NA	NA	Medtr1g126870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5679.1.S1_at	A	A1TS	POPTR_0015s06680	POPTR_0015s06680 (10)	scaffold_15:7668606-7671817(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5680.1.S1_s_at	A	A1TS	POPTR_0002s13920	POPTR_0002s13920 (11)	scaffold_2:10330551-10330928(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g41880.1	"hyaluronan/mRNA binding family domain containing protein, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5681.1.S1_at	A	A1TS	POPTR_0015s03670	POPTR_0015s03670 (11)	scaffold_15:3467885-3467921(-) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g158240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5681.1.S1_s_at	A	A1TS	POPTR_0015s03670	POPTR_0015s03670 (11)	scaffold_15:3467510-3468076(-) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g158240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5682.1.S1_s_at	A	A1TS	POPTR_0001s47070	POPTR_0001s47070 (11)	scaffold_1:47392908-47392999(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5682.3.S1_s_at	A	A1TS	POPTR_0001s47070	POPTR_0001s47070 (11)	scaffold_1:47392772-47392871(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5683.1.S1_s_at	A	A1TS	POPTR_0011s15120	POPTR_0011s15120 (9)	scaffold_11:17289197-17289926(+) (9)	POPTR_0011s15130 (7)	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.569.1.S1_s_at	A	A1TS	POPTR_0003s06160	POPTR_0003s06160 (11)	scaffold_3:7535781-7538171(-) (11)//scaffold_3:7573239-7575618(-) (11)	NA	Q5RC30	Signal peptidase complex catalytic subunit SEC11C	AT1G52600.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os06g16260.1	"OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed"	Medtr2g126230.1	"Peptidase S24, S26A and S26B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5691.1.S1_at	A	A1TS	POPTR_0007s13530	POPTR_0007s13530 (10)	scaffold_7:13583677-13585956(-) (10)	NA	NA	NA	AT3G51010.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g03540.1	expressed protein	Medtr8g093040.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5692.1.S1_s_at	A	A2TS	POPTR_0001s07160	POPTR_0001s07160 (11)//POPTR_0003s18990 (11)	scaffold_1:5437084-5437303(+) (11)//scaffold_3:17855041-17855260(-) (11)	NA	Q9M612	Nascent polypeptide-associated complex subunit alpha-like protein	AT3G12390.1	"Nascent polypeptide-associated complex (NAC), alpha subunit family protein "	LOC_Os01g71230.2	"nascent polypeptide-associated complex subunit alpha-like protein 3, putative, expressed"	Medtr7g105560.1	Ubiquitin-associated; Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5693.1.S1_s_at	A	A1TS	POPTR_0001s44990	POPTR_0001s44990 (11)	scaffold_1:45312457-45313125(-) (11)	NA	Q9XEX2	Peroxiredoxin-2B	AT1G65980.1	thioredoxin-dependent peroxidase 1 	LOC_Os01g48420.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.5694.1.A1_a_at	A	A1TS	POPTR_0001s47190	POPTR_0001s47190 (11)	scaffold_1:47488670-47489180(+) (11)	NA	Q8VYB2	Uridine kinase-like protein 3	AT1G55810.3	uridine kinase-like 3 	LOC_Os02g17320.2	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr3g080300.1	Phosphoribosyltransferase; Phosphoribulokinase/uridine kinase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.5695.1.S1_a_at	A	A2TS	POPTR_0155s00210	POPTR_0271s00220 (11)//POPTR_0155s00210 (11)	scaffold_155:3997-4362(-) (11)//scaffold_271:5115-5481(-) (11)	NA	Q9SX68	"50S ribosomal protein L18, chloroplastic"	AT1G48350.1	Ribosomal L18p/L5e family protein 	LOC_Os03g61260.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr2g052360.1	Ribosomal protein L18 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5696.1.S1_s_at	A	A1TS	POPTR_0006s15890	POPTR_0006s15890 (11)	scaffold_6:13565916-13566378(+) (11)	NA	O82197	Vacuolar protein sorting-associated protein 32 homolog 1	AT2G19830.1	SNF7 family protein 	LOC_Os06g40620.2	"SNF7 domain containing protein, putative, expressed"	Medtr4g160490.1	Snf7 	GO:0015031|protein transport	NA	NA
Ptp.5698.1.S1_s_at	A	A1TS	POPTR_0017s08600	POPTR_0017s08600 (11)	scaffold_17:7212985-7213195(-) (11)	NA	Q54Z26	Serine hydroxymethyltransferase 1	AT4G13930.1	serine hydroxymethyltransferase 4 	LOC_Os12g22030.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr4g133030.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.5699.1.S1_at	A	A1TS	POPTR_0010s20140	POPTR_0010s20140 (11)	scaffold_10:17852626-17853255(-) (11)	NA	Q9LMK0	60S ribosomal protein L35a-1	AT1G07070.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.57.2.S1_a_at	A	A1TS	POPTR_0002s07790	POPTR_0002s07790 (10)	scaffold_2:5335607-5336149(-) (10)	NA	Q9C5I1	UDP-sugar pyrophosphorylase	AT5G52560.1	UDP-sugar pyrophosphorylase 	LOC_Os06g48760.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.570.1.S1_s_at	A	A1TS	POPTR_0015s09880	POPTR_0015s09880 (10)	scaffold_15:10963625-10966065(+) (11)	NA	NA	NA	AT1G67785.1	unknown protein; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g68030.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5700.1.S1_s_at	A	A1TS	POPTR_0006s12350	POPTR_0006s12350 (11)	scaffold_6:9513373-9514029(+) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.5701.1.S1_at	A	A1TS	POPTR_0005s26950	POPTR_0005s26950 (11)	scaffold_5:24786579-24787031(+) (11)	NA	NA	NA	AT1G20460.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G76185.1); Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g46681.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5702.1.S1_s_at	A	A1TS	POPTR_0004s06940	POPTR_0004s06940 (11)	scaffold_4:5766744-5766780(-) (11)	NA	Q9CX34	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5702.2.S1_at	A	A1TS	POPTR_0004s06940	POPTR_0004s06940 (9)	scaffold_4:5765836-5765902(-) (11)	NA	Q9CX34	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5704.1.S1_at	A	A1TS	POPTR_0014s02980	POPTR_0014s02980 (9)	scaffold_14:2447635-2447808(-) (9)	NA	O15488	Glycogenin-2	AT4G33330.2	plant glycogenin-like starch initiation protein 3 	LOC_Os03g08600.1	"glycosyl transferase, putative, expressed"	Medtr1g024490.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.5707.1.A1_s_at	A	A1TS	POPTR_0001s15910	POPTR_0001s15910 (11)	scaffold_1:12755634-12758875(+) (11)	NA	O64764	"Thioredoxin O1, mitochondrial"	AT2G35010.2	thioredoxin O1 	LOC_Os06g45510.2	"thioredoxin, putative, expressed"	NA	NA	GO:0045454|cell redox homeostasis	NA	NA
Ptp.5709.1.S1_s_at	A	A1TS	POPTR_0013s06370	POPTR_0013s06370 (9)	scaffold_13:4926144-4926542(+) (9)	NA	Q94AA9	"Xylogalacturonan beta-1,3-xylosyltransferase"	AT3G45400.1	exostosin family protein 	LOC_Os03g20850.1	"exostosin family domain containing protein, expressed"	Medtr7g103930.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.571.1.A1_at	A	A1TS	POPTR_0006s23400	POPTR_0006s23400 (11)	scaffold_6:22132079-22133317(-) (11)	NA	O64847	UPF0136 membrane protein At2g26240	AT3G43520.1	Transmembrane proteins 14C 	LOC_Os04g55930.1	expressed protein	NA	NA	NA	NA	GO:0016020|membrane
Ptp.5711.1.S1_at	A	A1TS	POPTR_0006s03540	POPTR_0006s03540 (9)	scaffold_6:2310290-2311311(+) (11)	NA	Q5SMQ9	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr7g106430.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.5713.2.S1_a_at	A	A3TS	POPTR_0009s01420	POPTR_0009s01420 (11)//POPTR_0009s01410 (10)//POPTR_0143s00200 (9)	scaffold_143:1448-1669(-) (9)//scaffold_9:1661199-1661491(-) (10)//scaffold_9:1676828-1677120(-) (11)	NA	O82811	High-affinity nitrate transporter 2.1	AT1G08090.1	nitrate transporter 2:1 	LOC_Os02g02190.1	"transporter, major facilitator family, putative, expressed"	AC233663_16.1	"High affinity nitrate transporter, putative AC233663.2 118942-120870 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5715.1.S1_at	A	A1TS	POPTR_0001s08750	POPTR_0001s08750 (11)	scaffold_1:6685830-6686158(+) (11)	NA	P23586	Sugar transport protein 1	AT1G11260.1	sugar transporter 1 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr3g122420.1	Sugar transporter; Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.5717.1.S1_at	A	A1TS	POPTR_0009s04750	POPTR_0009s04750 (10)	scaffold_9:5023321-5023776(-) (10)	NA	Q9SBA7	Sugar transport protein 8	AT5G26250.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.5719.1.S1_at	A	A1TS	POPTR_0004s03360	POPTR_0004s03360 (11)	scaffold_4:2292705-2293236(-) (11)	NA	Q41144	Sugar carrier protein C	AT1G11260.1	sugar transporter 1 	LOC_Os07g01560.1	"transporter family protein, putative, expressed"	Medtr4g124840.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.572.1.A1_at	A	A1TS	POPTR_0015s08140	POPTR_0015s08140 (11)	scaffold_15:9411350-9411857(+) (11)	NA	NA	NA	AT3G48120.1	unknown protein; Has 22990 Blast hits to 12942 proteins in 666 species: Archae - 8; Bacteria - 739; Metazoa - 13803; Fungi - 2465; Plants - 1363; Viruses - 116; Other Eukaryotes - 4496 (source: NCBI BLink). 	LOC_Os01g49340.1	"arginine/serine-rich coiled-coil protein 1, putative, expressed"	Medtr8g124960.1	"FRAY subfamily protein kinase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5721.1.S1_at	A	A1TS	POPTR_0010s10820	POPTR_0010s10820 (11)	scaffold_10:11225676-11225967(-) (11)	NA	NA	NA	AT2G02180.1	tobamovirus multiplication protein 3 	LOC_Os10g39220.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5722.1.S1_at	A	A1TS	POPTR_0001s10930	POPTR_0001s10930 (11)	scaffold_1:8480891-8482196(-) (11)	NA	Q8VY91	"30S ribosomal protein S6 alpha, chloroplastic"	AT1G64510.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os03g62630.1	"ribosomal protein S6, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5723.1.S1_at	A	A1TS	POPTR_0001s14870	POPTR_0001s14870 (11)	scaffold_1:11679700-11680474(+) (11)	NA	Q9XHS0	40S ribosomal protein S12	AT2G32060.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g05580.1	"ribosomal protein L7Ae, putative, expressed"	Medtr5g012950.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5726.1.S1_at	A	A1TS	POPTR_0002s08680	POPTR_0002s08680 (9)	scaffold_2:6082284-6083169(+) (9)	NA	NA	NA	AT1G21930.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g29670.1	expressed protein	Medtr5g065220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5727.1.S1_x_at	A	A1TS	POPTR_0010s07020	POPTR_0010s07020 (11)	scaffold_10:8265730-8266457(-) (11)	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5728.1.S1_s_at	A	A1TS	POPTR_0014s04860	POPTR_0014s04860 (11)	scaffold_14:3748440-3748730(+) (11)	NA	P49030	Protein mago nashi homolog	AT1G02140.1	mago nashi family protein 	LOC_Os12g18880.1	"mago nashi, putative, expressed"	Medtr3g163680.1	Mago nashi protein 	NA	NA	GO:0005634|nucleus
Ptp.5729.1.S1_at	A	A1TS	POPTR_0008s10300	POPTR_0008s10300 (11)	scaffold_8:6448345-6448575(-) (11)	NA	P57741	Probable prefoldin subunit 3	AT5G49510.2	prefoldin 3 	LOC_Os12g37590.1	"prefoldin, putative, expressed"	Medtr2g037940.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.5730.1.S1_at	A	A1TS	POPTR_0006s11800	POPTR_0006s11800 (11)	scaffold_6:8976160-8976418(-) (11)	NA	P42896	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.5730.2.S1_a_at	A	A1TS	POPTR_0006s11800	POPTR_0006s11800 (11)	scaffold_6:8977600-8977820(-) (11)	NA	P42896	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.5734.2.S1_s_at	A	A1TS	POPTR_0003s16930	POPTR_0003s16930 (11)	scaffold_3:16428686-16428886(-) (11)	NA	Q9C7F5	Nuclear transport factor 2	AT1G27310.1	nuclear transport factor 2A 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
Ptp.5734.3.A1_at	A	A1TS	POPTR_0003s16930	POPTR_0003s16930 (10)	scaffold_3:16427204-16428598(-) (10)	NA	Q9C7F5	Nuclear transport factor 2	AT1G27310.1	nuclear transport factor 2A 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
Ptp.5735.1.S1_at	A	A1TS	POPTR_0005s25820	POPTR_0005s25820 (9)	scaffold_5:24009256-24009749(+) (10)	NA	P33083	Auxin-induced protein 6B	AT1G75590.1	SAUR-like auxin-responsive protein family  	LOC_Os04g56680.1	"OsSAUR22 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g097600.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5736.1.S1_at	A	A1TS	POPTR_0002s25950	POPTR_0002s25950 (11)	scaffold_2:22944951-22945862(+) (11)	NA	P27061	Acid phosphatase 1	AT1G04040.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr1g065230.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
Ptp.5737.1.A1_at	A	A1TS	POPTR_0016s08930	POPTR_0016s08930 (11)	scaffold_16:6722390-6722455(-) (11)	NA	B9IJ21	"Adenylosuccinate synthetase, chloroplastic"	AT3G57610.1	adenylosuccinate synthase 	LOC_Os03g07840.1	"adenylosuccinate synthetase, chloroplast precursor, putative, expressed"	Medtr7g110920.1	Adenylosuccinate synthetase 	GO:0006164|purine nucleotide biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004019|adenylosuccinate synthase activity||GO:0000287|magnesium ion binding||GO:0005525|GTP binding	NA
Ptp.5737.1.A1_s_at	A	A1TS	POPTR_0016s08930	POPTR_0016s08930 (11)	scaffold_16:6721861-6722391(-) (11)	NA	B9IJ21	"Adenylosuccinate synthetase, chloroplastic"	AT3G57610.1	adenylosuccinate synthase 	LOC_Os03g07840.1	"adenylosuccinate synthetase, chloroplast precursor, putative, expressed"	Medtr7g110920.1	Adenylosuccinate synthetase 	GO:0006164|purine nucleotide biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004019|adenylosuccinate synthase activity||GO:0000287|magnesium ion binding||GO:0005525|GTP binding	NA
Ptp.5738.1.S1_at	A	A1TS	POPTR_0001s01380	POPTR_0001s01380 (9)	scaffold_1:1027111-1027143(+) (9)	NA	Q94II3	Probable methyltransferase PMT21	AT4G19120.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr5g027150.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.5738.2.S1_s_at	A	A1TS	POPTR_0006s04890	POPTR_0006s04890 (11)	scaffold_6:3422338-3422447(-) (11)	NA	NA	NA	AT2G41810.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.574.1.A1_at	A	A1TS	POPTR_0001s29390	POPTR_0001s29390 (11)	scaffold_1:28090323-28091255(-) (11)	NA	Q04212	D-arabinose 1-dehydrogenase	AT4G33670.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os12g29760.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g121930.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5740.1.S1_a_at	A	A1TS	POPTR_0002s10440	POPTR_0002s10440 (11)	scaffold_2:7527426-7528829(-) (11)	NA	NA	NA	AT5G49710.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g54080.2	expressed protein	Medtr5g074990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5741.1.S1_at	A	A1TS	POPTR_0011s03550	POPTR_0011s03550 (11)	scaffold_11:3610763-3611419(-) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT1G11430.1	"plastid developmental protein DAG, putative "	LOC_Os08g04450.3	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g011060.1	"DAG protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5742.1.S1_at	A	A1TS	POPTR_0010s05340	POPTR_0010s05340 (11)	scaffold_10:6808256-6808314(+) (11)	NA	Q84JS6	Homeobox protein knotted-1-like 6	AT1G23380.2	KNOTTED1-like homeobox gene 6 	LOC_Os03g51690.2	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5747.1.S1_s_at	A	A1TS	POPTR_0030s00470	POPTR_0030s00470 (11)	scaffold_30:203983-204520(-) (11)	NA	Q8LC83	40S ribosomal protein S24-2	AT5G28060.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5747.2.A1_s_at	A	A1TA	POPTR_0030s00470	POPTR_0030s00470 (11)	scaffold_30:205801-205886(+) (11)	POPTR_0005s05120 (7)	Q8LC83	40S ribosomal protein S24-2	AT5G28060.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5748.1.S1_s_at	A	A1TS	POPTR_0001s15850	POPTR_0001s15850 (11)	scaffold_1:12689819-12689877(-) (11)//scaffold_3:11925571-11925619(-) (9)	POPTR_0003s11070 (8)	P14009	14 kDa proline-rich protein DC2.15	AT4G12500.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46810.1	"LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106110.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5749.1.S1_a_at	A	A1TS	POPTR_0008s17140	POPTR_0008s17140 (11)	scaffold_8:11524888-11525340(+) (11)	NA	O22785	Pre-mRNA-processing factor 19 homolog 2	AT2G33340.2	MOS4-associated  complex 3B 	LOC_Os10g32880.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g065090.1	U box; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.575.1.S1_s_at	A	A1TS	POPTR_0016s08010	POPTR_0016s08010 (11)	scaffold_16:5812800-5812969(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT3G52660.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g127590.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5750.1.A1_a_at	A	A1TS	POPTR_0013s12480	POPTR_0013s12480 (11)	scaffold_13:13140309-13140395(-) (11)	NA	Q54YW8	"DNA-directed RNA polymerases I, II, and III subunit rpabc3"	AT3G59600.1	RNA polymerase Rpb8 	LOC_Os06g48230.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed"	Medtr8g147760.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
Ptp.5750.2.S1_a_at	A	A1TS	POPTR_0013s12480	POPTR_0013s12480 (11)	scaffold_13:13137024-13137731(-) (11)	NA	Q54YW8	"DNA-directed RNA polymerases I, II, and III subunit rpabc3"	AT3G59600.1	RNA polymerase Rpb8 	LOC_Os06g48230.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed"	Medtr8g147760.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
Ptp.5752.1.S1_at	A	A1TS	POPTR_0005s26170	POPTR_0005s26170 (11)	scaffold_5:24246520-24246796(+) (11)	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.5754.1.S1_s_at	A	A1TS	POPTR_0015s01610	POPTR_0015s01610 (11)	scaffold_15:1005267-1005455(-) (11)	NA	Q9M3B0	Probable pectinesterase/pectinesterase inhibitor 34	AT3G49220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g13320.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.5755.1.S1_s_at	A	A1TS	POPTR_0009s13280	POPTR_0009s13280 (11)	scaffold_9:10617597-10617838(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5756.1.S1_a_at	A	A1TS	POPTR_0008s03570	POPTR_0008s03570 (11)	scaffold_8:1915305-1917389(+) (11)	NA	P61271	Ras-related protein Rab-5A	AT3G54840.1	Ras-related small GTP-binding family protein 	LOC_Os10g30520.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5756.2.S1_at	A	A1TS	POPTR_0010s23310	POPTR_0010s23310 (9)	scaffold_10:19929875-19929907(-) (9)	NA	P31583	Ras-related protein RHN1	AT3G54840.1	Ras-related small GTP-binding family protein 	LOC_Os10g30520.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.5757.1.S1_at	A	A1TS	POPTR_0015s14200	POPTR_0015s14200 (11)	scaffold_15:13890004-13890093(-) (11)	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5757.1.S1_x_at	A	A1TS	POPTR_0015s14200	POPTR_0015s14200 (11)	scaffold_15:13889991-13890251(-) (11)	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5759.1.S1_s_at	A	A1TS	POPTR_0001s13330	POPTR_0001s13330 (11)	scaffold_1:10423953-10424307(+) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT5G21090.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g59440.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr7g005120.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.5760.1.S1_at	A	A1TS	POPTR_0006s26550	POPTR_0006s26550 (11)	scaffold_6:24731715-24732075(-) (11)	NA	Q9C944	Probable histone H2A variant 3	AT1G52740.1	histone H2A protein 9 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g013390.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.5762.1.S1_at	A	A1TS	POPTR_0011s01570	POPTR_0011s01570 (11)	scaffold_11:1105706-1105744(-) (11)	NA	NA	NA	AT4G22140.2	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os09g21770.1	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
Ptp.5764.1.S1_at	A	A1TS	POPTR_0009s12800	POPTR_0009s12800 (11)	scaffold_9:10380740-10380825(+) (11)	NA	P28475	NADP-dependent D-sorbitol-6-phosphate dehydrogenase	AT2G21250.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os02g03100.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g097480.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5764.1.S1_s_at	A	A1TS	POPTR_0009s12800	POPTR_0009s12800 (11)	scaffold_9:10380827-10381340(+) (11)	NA	P28475	NADP-dependent D-sorbitol-6-phosphate dehydrogenase	AT2G21250.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os02g03100.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g097480.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5765.1.S1_s_at	A	A2TS	POPTR_0001s45810	POPTR_0001s45810 (10)//POPTR_0001s45820 (9)	scaffold_1:46315991-46316024(-) (10)//scaffold_1:46320742-46328484(-) (10)//scaffold_1:46328461-46328493(-) (9)	NA	P49210	60S ribosomal protein L9	AT1G33140.1	Ribosomal protein L6 family 	LOC_Os09g31180.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5765.1.S1_x_at	A	A2TS	POPTR_0001s45810	POPTR_0001s45810 (11)//POPTR_0001s45820 (11)	scaffold_1:46315741-46317246(-) (11)//scaffold_1:46320504-46328483(-) (11)//scaffold_1:46328211-46329426(-) (9)	NA	P49210	60S ribosomal protein L9	AT1G33140.1	Ribosomal protein L6 family 	LOC_Os09g31180.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5765.3.S1_at	A	A1TA	POPTR_0016s02600	POPTR_0016s02600 (10)	scaffold_16:1281494-1282551(+) (10)	NA	Q93YF5	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1"	AT1G73100.1	SU(VAR)3-9 homolog 3 	LOC_Os05g41172.2	"histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed"	Medtr7g105180.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.5767.1.S1_at	A	A1TS	POPTR_0007s07320	POPTR_0007s07320 (10)	scaffold_7:5664785-5665481(-) (10)	NA	P54697	Myosin-J heavy chain	AT3G19960.1	myosin 1 	LOC_Os10g34710.1	"myosin-2 heavy chain, non muscle, putative, expressed"	Medtr1g046530.1	"IQ calmodulin-binding region; Myosin head, motor region "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
Ptp.5768.2.S1_a_at	A	A1TS	POPTR_0004s21300	POPTR_0004s21300 (11)	scaffold_4:20484930-20485666(-) (11)	NA	Q8VZB9	60S ribosomal protein L10a-1	AT1G08360.1	Ribosomal protein L1p/L10e family 	LOC_Os01g64090.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.5769.1.S1_at	A	A1TS	POPTR_0009s00620	POPTR_0009s00620 (11)	scaffold_9:666848-667855(+) (11)	NA	NA	NA	AT1G08480.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os08g02080.1	"rickettsia 17 kDa surface antigen family protein, expressed"	Medtr4g114250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5771.1.S1_at	A	A1TS	POPTR_0008s11660	POPTR_0008s11660 (9)	scaffold_8:7448863-7449630(+) (9)	NA	Q31QE7	ATP-dependent Clp protease adapter protein ClpS	AT1G68660.1	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 	LOC_Os08g33540.1	"ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed"	Medtr5g068520.1	ATP-dependent Clp protease adaptor protein ClpS 	GO:0030163|protein catabolic process||GO:0009057|macromolecule catabolic process	NA	NA
Ptp.5774.1.S1_at	A	A1TS	POPTR_0009s07150	POPTR_0009s07150 (11)	scaffold_9:6757081-6757125(+) (11)	NA	Q43594	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5776.1.S1_a_at	A	A2TS	POPTR_0004s00950	POPTR_0021s00350 (11)//POPTR_0004s00950 (11)	scaffold_21:102983-103560(-) (11)//scaffold_4:458825-459408(-) (11)//scaffold_4:479032-479619(-) (9)	POPTR_0004s00990 (8)	Q9ZS51	Peroxisomal membrane protein PMP22	AT4G04470.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os02g13270.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr1g090150.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
Ptp.5776.1.S1_s_at	A	A1TS	POPTR_0021s00350	POPTR_0021s00350 (11)	scaffold_21:102863-103819(-) (11)	POPTR_0004s00950 (8)	Q9ZS51	Peroxisomal membrane protein PMP22	AT4G04470.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os02g13270.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr1g090150.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
Ptp.5778.1.S1_at	A	A1TS	POPTR_0012s04090	POPTR_0012s04090 (10)	scaffold_12:3308851-3308884(+) (10)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.5778.1.S1_s_at	A	A1TS	POPTR_0012s04090	POPTR_0012s04090 (11)	scaffold_12:3308870-3309998(+) (11)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.5779.1.S1_s_at	A	A1TS	POPTR_0002s16970	POPTR_0002s16970 (11)	scaffold_2:12738705-12739256(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.578.1.A1_s_at	A	A1TS	POPTR_0607s00230	POPTR_0607s00230 (11)	scaffold_10:18906104-18906282(-) (11)//scaffold_607:7754-11560(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g06030.1	conserved hypothetical protein	Medtr7g135290.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5780.1.S1_a_at	A	A1TS	POPTR_0010s01660	POPTR_0010s01660 (11)	scaffold_10:1856755-1857800(-) (11)	NA	Q8G0J9	Probable peptidyl-prolyl cis-trans isomerase	AT1G26940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os11g38990.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g040220.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.5781.1.S1_at	A	A1TS	POPTR_0008s17560	POPTR_0008s17560 (10)	scaffold_8:11829821-11829854(+) (10)	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5781.1.S1_s_at	A	A1TS	POPTR_0008s17560	POPTR_0008s17560 (11)	scaffold_8:11829955-11830526(+) (11)	NA	P51413	60S ribosomal protein L17-2	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5782.1.S1_at	A	A1TS	POPTR_0001s11720	POPTR_0001s11720 (11)	scaffold_1:9087179-9087660(+) (11)	NA	Q05737	GTP-binding protein YPTM2	AT1G02130.1	RAS 5 	LOC_Os01g08450.1	"ras-related protein, putative, expressed"	Medtr7g093170.1	"Ras GTPase; Sigma-54 factor, interaction region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5783.1.S1_at	A	A1TS	POPTR_0006s11850	POPTR_0006s11850 (10)	scaffold_6:9038035-9038792(-) (10)	NA	Q2JS42	Uridylate kinase	AT3G10030.1	aspartate/glutamate/uridylate kinase family protein 	LOC_Os04g33300.1	"amino acid kinase, putative, expressed"	Medtr1g073630.1	Aspartate/glutamate/uridylate kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
Ptp.5785.1.S1_s_at	A	A1TS	POPTR_0017s08570	POPTR_0017s08570 (11)	scaffold_17:7156449-7156882(+) (11)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT4G13850.3	glycine-rich RNA-binding protein 2 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g105170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5786.1.S1_s_at	A	A1TS	POPTR_0014s18960	POPTR_0014s18960 (11)	scaffold_14:16571767-16573572(-) (11)	NA	NA	NA	AT3G07170.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g30910.2	"SAM domain family protein, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5787.1.S1_at	A	A1TS	POPTR_0008s20370	POPTR_0008s20370 (10)	scaffold_8:14148939-14148972(-) (10)	NA	Q94A20	BI1-like protein	AT4G15470.1	Bax inhibitor-1 family protein 	LOC_Os05g33360.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr2g026190.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5787.1.S1_s_at	A	A1TS	POPTR_0008s20370	POPTR_0008s20370 (11)	scaffold_8:14149419-14149454(-) (11)	NA	Q94A20	BI1-like protein	AT4G15470.1	Bax inhibitor-1 family protein 	LOC_Os05g33360.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr2g026190.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5789.1.S1_at	A	A1TS	POPTR_0005s03690	POPTR_0005s03690 (11)	scaffold_5:2461053-2462574(+) (11)	NA	Q54TS4	Protein YIPF1 homolog	AT5G27490.1	Integral membrane Yip1 family protein 	LOC_Os01g42480.1	"Yip1 domain containing protein, expressed"	Medtr7g139390.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.579.1.A1_at	A	A1TS	POPTR_0001s01320	POPTR_0001s01320 (11)	scaffold_1:985558-985640(-) (11)	NA	NA	NA	AT4G19140.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51166.1	expressed protein	Medtr5g027030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5790.1.S1_s_at	A	A1TS	POPTR_0015s07100	POPTR_0015s07100 (11)	scaffold_15:8230044-8230528(+) (11)	NA	Q94KT8	Protein COBRA	AT5G60920.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os07g41310.1	"COBRA, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5791.1.S1_at	A	A1TS	POPTR_0004s17960	POPTR_0004s17960 (9)	scaffold_4:18003150-18003700(+) (11)	NA	O65351	Subtilisin-like protease	AT4G34980.1	subtilisin-like serine protease 2 	LOC_Os03g13930.1	"OsSub28 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.5793.1.S1_s_at	A	A1TS	POPTR_0008s13290	POPTR_0008s13290 (11)	scaffold_8:8709938-8710862(-) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.3	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5794.1.A1_at	A	A1TS	POPTR_0008s13270	POPTR_0008s13270 (10)	scaffold_8:8702179-8702408(+) (10)	NA	Q9W1X7	Mediator of RNA polymerase II transcription subunit 23	AT1G23230.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). 	LOC_Os02g49992.1	expressed protein	AC233676_14.1	hypothetical protein AC233676.2 65637-60727 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5795.1.S1_at	A	A1TS	POPTR_0008s14650	POPTR_0008s14650 (9)	scaffold_8:9729249-9729411(+) (9)	NA	Q9ZTR1	Spermidine synthase 1	AT1G70310.1	spermidine synthase 2 	LOC_Os07g22600.1	"spermidine synthase, putative, expressed"	Medtr5g035800.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.5797.1.A1_at	A	A1TS	POPTR_0003s13440	POPTR_0003s13440 (11)	scaffold_3:13821956-13822344(-) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5798.1.S1_at	A	A1TS	POPTR_0002s24910	POPTR_0002s24910 (11)	scaffold_2:22121992-22122053(-) (11)	NA	NA	NA	AT3G07310.1	Protein of unknown function (DUF760) 	LOC_Os11g26890.2	expressed protein	Medtr8g012790.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5799.1.S1_at	A	A1TS	POPTR_0010s17280	POPTR_0010s17280 (11)	scaffold_10:15929881-15930830(+) (11)	NA	NA	NA	AT1G26750.1	unknown protein; Has 44 Blast hits to 44 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g10650.1	expressed protein	Medtr2g104660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.580.1.A1_s_at	A	A1TS	POPTR_0005s18810	POPTR_0005s18810 (11)	scaffold_5:17115446-17116416(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G43100.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g40260.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr5g016240.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5801.1.S1_at	A	A1TS	POPTR_0008s18160	POPTR_0008s18160 (11)	scaffold_8:12173588-12174240(+) (11)	NA	NA	NA	AT1G24440.1	RING/U-box superfamily protein 	LOC_Os07g17400.2	"zinc finger, RING-type, putative, expressed"	Medtr3g102930.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5801.2.S1_a_at	A	A1TS	POPTR_0008s18160	POPTR_0008s18160 (11)	scaffold_8:12172284-12173259(+) (11)	NA	NA	NA	AT1G24440.1	RING/U-box superfamily protein 	LOC_Os07g17400.2	"zinc finger, RING-type, putative, expressed"	Medtr3g102930.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5802.1.S1_at	A	A1TS	POPTR_0001s39290	POPTR_0001s39290 (10)	scaffold_1:38495800-38496788(-) (10)	NA	P73555	Uncharacterized membrane protein sll0875	AT1G78620.1	"Protein of unknown function DUF92, transmembrane "	LOC_Os01g52864.2	"transmembrane protein, putative, expressed"	Medtr7g062060.1	"Protein of unknown function DUF92, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5803.1.S1_at	A	A1TS	POPTR_0011s12800	POPTR_0011s12800 (11)	scaffold_11:15488881-15492095(+) (11)	NA	NA	NA	AT1G11360.4	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g57450.1	"universal stress protein domain containing protein, putative, expressed"	Medtr2g103170.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.5804.1.S1_at	A	A1TS	POPTR_0008s15730	POPTR_0008s15730 (10)	scaffold_8:10487169-10488719(+) (10)	NA	Q8W108	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3"	AT4G14710.2	RmlC-like cupins superfamily protein 	LOC_Os03g06620.1	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed"	NA	NA	GO:0071267|L-methionine salvage||GO:0071265|L-methionine biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0019509|L-methionine salvage from methylthioadenosine||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction||GO:0009086|methionine biosynthetic process	GO:0046872|metal ion binding||GO:0051213|dioxygenase activity	NA
Ptp.5805.1.S1_at	A	A1TS	POPTR_0011s11260	POPTR_0011s11260 (11)	scaffold_11:13988372-13988448(+) (11)	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.5806.1.A1_at	A	A1TS	POPTR_0017s08430	POPTR_0017s08430 (10)	scaffold_17:6958858-6961864(+) (10)	NA	O96625	Actin-related protein 2/3 complex subunit 4	AT4G14147.1	protein binding 	LOC_Os03g63090.2	"actin-related protein 2/3 complex subunit 4, putative, expressed"	Medtr4g133580.1	ARP23 complex 20 kDa subunit 	GO:0030041|actin filament polymerization	NA	GO:0005856|cytoskeleton
Ptp.5807.1.A1_at	A	A1TS	POPTR_0013s08350	POPTR_0013s08350 (11)	scaffold_13:7433488-7434413(+) (11)	NA	Q9FFE0	Regulator of ribonuclease-like protein 2	AT5G16450.2	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os01g52460.2	"regulator of ribonuclease, putative, expressed"	Medtr7g089680.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5808.1.S1_at	A	A1TS	POPTR_0006s28350	POPTR_0006s28350 (11)	scaffold_6:26060053-26060368(-) (11)	NA	Q940T9	Zinc finger protein CONSTANS-LIKE 4	AT5G24930.1	CONSTANS-like 4 	LOC_Os04g42020.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr1g016230.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.581.1.S1_s_at	A	A1TS	POPTR_0018s01660	POPTR_0018s01660 (9)	scaffold_18:1527741-1528116(-) (9)	NA	O48781	SPX domain-containing protein 2	AT2G26660.1	SPX domain gene 2 	LOC_Os06g40120.1	"SPX domain containing protein, putative, expressed"	Medtr1g013760.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5810.1.S1_s_at	A	A2TS	POPTR_0008s02650	POPTR_0008s02650 (11)//POPTR_0010s24030 (11)	scaffold_10:20430130-20430455(+) (11)//scaffold_8:1341396-1341720(-) (11)	NA	Q9LZR3	Glucomannan 4-beta-mannosyltransferase 9	AT5G03760.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr1g073500.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5813.1.S1_at	A	A1TS	POPTR_0002s11400	POPTR_0002s11400 (11)	scaffold_2:8435223-8439524(+) (11)	NA	O04135	Homeobox protein knotted-1-like 2	AT4G08150.1	KNOTTED-like from Arabidopsis thaliana 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5813.1.S2_at	A	A1TS	POPTR_0002s11400	POPTR_0002s11400 (11)	scaffold_2:8439561-8439796(+) (11)	NA	O04135	Homeobox protein knotted-1-like 2	AT4G08150.1	KNOTTED-like from Arabidopsis thaliana 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.5814.1.S1_s_at	A	A1TS	POPTR_0009s01400	POPTR_0009s01400 (11)	scaffold_9:1657954-1659210(+) (11)	NA	NA	NA	AT3G45050.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 28 Blast hits to 28 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g51470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5817.1.S1_at	A	A1TS	POPTR_0015s10680	POPTR_0015s10680 (11)	scaffold_15:11540151-11540483(+) (11)	NA	Q8LBB2	SNF1-related protein kinase regulatory subunit gamma 1	AT3G48530.1	SNF1-related protein kinase regulatory subunit gamma 1 	LOC_Os04g31340.1	"CBS domain containing membrane protein, putative, expressed"	Medtr8g109260.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5817.2.S1_at	A	A1MS	POPTR_0015s10680	POPTR_0015s10680 (9)	scaffold_15:11539658-11539881(+) (9)	NA	Q8LBB2	SNF1-related protein kinase regulatory subunit gamma 1	AT3G48530.1	SNF1-related protein kinase regulatory subunit gamma 1 	LOC_Os04g31340.1	"CBS domain containing membrane protein, putative, expressed"	Medtr8g109260.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5818.1.S1_s_at	A	A1TS	POPTR_0011s14300	POPTR_0011s14300 (11)	scaffold_11:16749182-16749341(-) (11)	NA	P52758	Ribonuclease UK114	AT3G20390.1	endoribonuclease L-PSP family protein 	LOC_Os07g33240.1	"endoribonuclease, putative, expressed"	Medtr5g100060.1	YjgF-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5819.1.S1_at	A	A1TS	POPTR_0006s08660	POPTR_0006s08660 (9)	scaffold_6:6346186-6347608(+) (9)	NA	Q9SR33	Oxysterol-binding protein-related protein 3B	AT3G09300.1	OSBP(oxysterol binding protein)-related protein 3B 	LOC_Os03g16690.1	"oxysterol-binding protein, putative, expressed"	Medtr4g083830.1	Oxysterol-binding protein 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
Ptp.5820.1.S1_s_at	A	A1TS	POPTR_0016s00320	POPTR_0016s00320 (11)	scaffold_16:52108-52826(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT3G24120.1	Homeodomain-like superfamily protein 	LOC_Os08g25799.1	"Myb transcription factor, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5821.1.S1_at	A	A1TS	POPTR_0007s02160	POPTR_0007s02160 (11)	scaffold_7:1281733-1283057(-) (11)	NA	O04922	Probable glutathione peroxidase 2	AT2G31570.1	glutathione peroxidase 2 	LOC_Os11g18170.1	"glutathione peroxidase, putative, expressed"	Medtr4g156860.1	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
Ptp.5822.1.S1_s_at	A	A1TS	POPTR_0002s07600	POPTR_0002s07600 (11)	scaffold_2:5196497-5197675(+) (11)	NA	NA	NA	AT1G76980.1	BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5824.2.S1_a_at	A	A1TS	POPTR_0006s26070	POPTR_0006s26070 (11)	scaffold_6:24368951-24369453(-) (11)	NA	O31607	Group 2 truncated hemoglobin yjbI	AT4G32690.1	hemoglobin 3 	LOC_Os06g39140.1	"hemoglobin-like protein HbO, putative, expressed"	Medtr1g009840.1	Globin-related 	GO:0015671|oxygen transport	GO:0019825|oxygen binding	NA
Ptp.5825.1.S1_at	A	A1TS	POPTR_0018s01790	POPTR_0018s01790 (11)	scaffold_18:1634210-1634246(-) (11)	NA	Q8LF20	Putative clathrin assembly protein At2g25430	AT2G25430.1	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr3g137180.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
Ptp.5826.1.S1_at	A	A1TS	POPTR_0009s09570	POPTR_0009s09570 (11)	scaffold_9:8430404-8430878(+) (11)	NA	O64628	Thioredoxin domain-containing protein 9 homolog	AT2G18990.1	thioredoxin domain-containing protein 9 homolog 	LOC_Os08g15204.1	"thioredoxin domain-containing protein 9, putative, expressed"	Medtr8g092810.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5829.1.S1_at	A	A1TS	POPTR_0004s19810	POPTR_0004s19810 (10)	scaffold_4:19529653-19530855(+) (10)	NA	NA	NA	AT2G27740.1	Family of unknown function (DUF662)  	LOC_Os04g33450.2	expressed protein	Medtr7g126780.2	Protein of unknown function DUF662 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.583.1.S1_s_at	A	A1TS	POPTR_0003s13810	POPTR_0003s13810 (11)	scaffold_3:14086405-14087097(+) (11)	NA	A7YY75	Nucleoporin SEH1	AT1G64350.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g43250.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g076630.1	"seh1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5830.1.S1_at	A	A1TS	POPTR_0005s15800	POPTR_0005s15800 (11)	scaffold_5:12393403-12394373(-) (11)	NA	Q641Z5	Cation transport regulator-like protein 2	AT1G44790.1	ChaC-like family protein 	LOC_Os04g37580.1	"cation transport regulator-like protein 1, putative, expressed"	Medtr1g037330.1	ChaC-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5832.1.S1_at	A	A1TS	POPTR_0010s20000	POPTR_0010s20000 (11)	scaffold_10:17747519-17749052(+) (11)	NA	Q76P23	Mitochondrial substrate carrier family protein Q	AT2G39970.1	Mitochondrial substrate carrier family protein 	LOC_Os03g15860.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g089250.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5833.1.S1_at	A	A1TS	POPTR_0006s19200	POPTR_0006s19200 (11)	scaffold_6:18180042-18180311(-) (11)	NA	NA	NA	AT1G67170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). 	LOC_Os04g40300.1	"transglutaminase, putative, expressed"	Medtr2g071550.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5834.1.A1_s_at	A	A1TS	POPTR_0008s12480	POPTR_0008s12480 (11)	scaffold_8:8073148-8073645(+) (11)	NA	Q9ZU52	"Probable fructose-bisphosphate aldolase 3, chloroplastic"	AT2G01140.1	Aldolase superfamily protein 	LOC_Os01g02880.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.5835.1.S1_at	A	A1TS	POPTR_0002s03600	POPTR_0002s03600 (11)	scaffold_2:2239656-2240047(+) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT1G47270.2	tubby like protein 6 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5836.1.S1_at	A	A1TS	POPTR_0002s06240	POPTR_0002s06240 (10)	scaffold_2:4176668-4177781(+) (10)	NA	Q6YYB0	Uncharacterized protein Os08g0359500	AT4G02450.2	HSP20-like chaperones superfamily protein 	LOC_Os03g26460.1	"CS domain containing protein, putative, expressed"	Medtr6g033380.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5837.1.S1_at	A	A1TS	POPTR_0002s03770	POPTR_0002s03770 (9)	scaffold_2:2346089-2346395(-) (9)	NA	Q681Q7	Uncharacterized protein At1g03900	AT1G03900.1	non-intrinsic ABC protein 4 	LOC_Os10g33630.2	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
Ptp.5838.1.S1_at	A	A1TS	POPTR_0002s03700	POPTR_0002s03700 (11)	scaffold_2:2295739-2295888(+) (11)	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os02g40880.1	"ribosomal protein L14, putative, expressed"	Medtr1g090300.1	Ribosomal protein L14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5838.1.S1_s_at	A	A2TS	POPTR_0002s03700	POPTR_0002s03700 (11)//POPTR_0005s24890 (10)	scaffold_2:2294151-2295753(+) (11)//scaffold_5:23312411-23313986(-) (10)	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os02g40880.1	"ribosomal protein L14, putative, expressed"	Medtr1g090300.1	Ribosomal protein L14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5839.1.S1_s_at	A	A1TS	POPTR_0005s18840	POPTR_0005s18840 (11)	scaffold_5:17174115-17175347(-) (11)	NA	Q9FPR2	Lysine-rich arabinogalactan protein 18	AT4G37450.1	arabinogalactan protein  18 	NA	NA	Medtr8g099180.1	"Lysine-rich arabinogalactan protein 18 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.584.1.A1_at	A	A1TS	POPTR_0014s13640	POPTR_0014s13640 (10)	scaffold_14:10009402-10009646(+) (10)	NA	Q9XIW1	Probable xyloglucan endotransglucosylase/hydrolase protein 5	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099550.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.5840.2.S1_a_at	A	A1TS	POPTR_0013s13320	POPTR_0013s13320 (11)	scaffold_13:13831778-13832157(-) (11)	NA	P27527	"Ribosomal protein S19, mitochondrial"	AT5G47320.1	ribosomal protein S19 	NA	NA	Medtr5g092650.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5841.1.S1_at	A	A1TS	POPTR_0005s21810	POPTR_0005s21810 (11)	scaffold_5:20881657-20883595(-) (11)	NA	NA	NA	AT1G22790.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g40700.1	expressed protein	Medtr1g124750.1	"T22J18.4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5842.1.A1_s_at	A	A1TS	POPTR_0008s19970	POPTR_0008s19970 (11)	scaffold_8:13792250-13792545(-) (11)	NA	Q8VY21	Tubby-like F-box protein 3	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5842.2.A1_s_at	A	A1TS	POPTR_0008s19970	POPTR_0008s19970 (11)	scaffold_8:13792197-13792361(-) (11)	NA	Q8VY21	Tubby-like F-box protein 3	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5842.3.S1_at	A	A1MS	POPTR_0008s19970	POPTR_0008s19970 (11)	scaffold_8:13792864-13793039(-) (11)	NA	Q8VY21	Tubby-like F-box protein 3	AT2G47900.2	tubby like protein 3 	LOC_Os03g22800.1	"OsFBT5 - F-box and tubby domain containing protein, expressed"	Medtr2g025370.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5843.1.S1_s_at	A	A1TS	POPTR_0015s02540	POPTR_0015s02540 (11)	scaffold_15:1824208-1824603(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G18490.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g04710.1	"aspartic proteinase, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5844.1.S1_s_at	A	A1TS	POPTR_0008s05320	POPTR_0008s05320 (11)	scaffold_8:3091477-3093066(-) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT2G28760.3	UDP-XYL synthase 6 	LOC_Os03g16980.2	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr2g114640.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.5845.1.S1_s_at	A	A1TS	POPTR_0008s00310	POPTR_0008s00310 (11)	scaffold_8:91660-92115(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT5G08570.1	Pyruvate kinase family protein 	LOC_Os04g58110.1	"pyruvate kinase, putative, expressed"	Medtr4g115180.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.5846.1.S1_s_at	A	A1TS	POPTR_0004s11780	POPTR_0004s11780 (11)	scaffold_4:10652351-10652913(+) (11)	NA	Q9FNP8	40S ribosomal protein S19-3	AT5G61170.1	Ribosomal protein S19e family protein 	LOC_Os03g31134.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g005130.1	Ribosomal protein S19e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5847.1.S1_at	A	A1TS	POPTR_0011s14290	POPTR_0011s14290 (11)	scaffold_11:16743814-16747517(-) (11)	NA	Q55BI3	Ubiquitin thioesterase OTU1	AT1G50670.1	OTU-like cysteine protease family protein 	LOC_Os02g06890.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr5g100030.1	"Ovarian tumour, otubain; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5848.1.S1_s_at	A	A1TS	POPTR_0006s23360	POPTR_0006s23360 (11)	scaffold_6:22112951-22113331(-) (11)	NA	Q8H7N9	E3 ubiquitin-protein ligase Os03g0188200	AT5G20885.1	RING/U-box superfamily protein 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.585.1.S1_s_at	A	A1TS	POPTR_0016s02100	POPTR_0016s02100 (11)	scaffold_16:1015325-1015500(+) (11)	NA	Q7ZUW2	Hypoxia up-regulated protein 1	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g48110.1	"DnaK family protein, putative, expressed"	Medtr3g068340.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5850.1.S1_s_at	A	A1TS	POPTR_0002s25050	POPTR_0002s25050 (11)	scaffold_2:22249708-22249746(-) (11)	NA	P49211	60S ribosomal protein L32-1	AT4G18100.1	Ribosomal protein L32e 	LOC_Os09g32532.2	"60S ribosomal protein L32, putative, expressed"	Medtr4g134080.1	Ribosomal protein L32e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5851.1.S1_s_at	A	A1TS	POPTR_0019s09090	POPTR_0019s09090 (11)	scaffold_19:10654693-10656004(+) (11)	NA	O24496	Hydroxyacylglutathione hydrolase cytoplasmic	AT3G10850.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os03g21460.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr5g077130.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5852.1.S1_at	A	A1TS	POPTR_0015s04240	POPTR_0015s04240 (11)	scaffold_15:4291685-4296007(-) (11)	NA	Q60HE1	Peroxisomal biogenesis factor 3	AT1G48635.1	peroxin 3 	LOC_Os09g14510.1	"peroxin-3 family protein, putative, expressed"	Medtr4g155490.1	Peroxin-3 	GO:0007031|peroxisome organization	NA	GO:0005779|integral to peroxisomal membrane
Ptp.5855.1.S1_at	A	A1TS	POPTR_0001s36690	POPTR_0001s36690 (9)	scaffold_1:35390160-35390515(+) (9)	NA	Q12872	"Splicing factor, arginine/serine-rich 8"	AT5G55100.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 	LOC_Os01g50320.1	"surp module family protein, putative, expressed"	Medtr5g100990.1	SWAP/Surp 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.5856.1.S1_s_at	A	A1TS	POPTR_0015s05230	POPTR_0015s05230 (11)	scaffold_15:5596751-5596958(-) (11)	NA	P27161	Calmodulin	AT5G37780.1	calmodulin 1 	LOC_Os05g41210.1	"OsCam2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5856.2.S1_s_at	A	A1MS	POPTR_0015s05230	POPTR_0015s05230 (11)	scaffold_15:5597326-5597452(-) (11)	NA	P27161	Calmodulin	AT5G37780.1	calmodulin 1 	LOC_Os05g41210.1	"OsCam2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5859.3.S1_s_at	A	A1TS	POPTR_0007s13930	POPTR_0007s13930 (11)	scaffold_7:13924118-13924728(-) (11)	NA	P40267	Histone H1	AT2G18050.1	histone H1-3 	LOC_Os06g04020.1	"histone H1, putative, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.5861.1.S1_s_at	A	A1TS	POPTR_0006s23940	POPTR_0006s23940 (11)	scaffold_6:22664757-22666681(-) (11)	NA	Q5SRE7	Phytanoyl-CoA dioxygenase domain-containing protein 1	AT2G01490.1	phytanoyl-CoA dioxygenase (PhyH) family protein 	LOC_Os05g39650.1	"phytanoyl-CoA dioxygenase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5863.1.S1_a_at	A	A1TS	POPTR_0007s14080	POPTR_0007s14080 (11)	scaffold_7:13993098-13993512(-) (11)	NA	NA	NA	AT2G17990.1	BEST Arabidopsis thaliana protein match is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast hits to 6129 proteins in 783 species: Archae - 220; Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants - 442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI BLink). 	LOC_Os06g50146.1	"calcium-dependent protein kinase CPK1 adapter protein 2, putative, expressed"	Medtr8g090110.1	"Calcium-dependent protein kinase CPK1 adapter protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5865.1.A1_at	A	A1TS	POPTR_0002s16950	POPTR_0002s16950 (11)	scaffold_2:12688032-12689141(-) (11)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5866.1.S1_s_at	A	A2TS	POPTR_0011s15080	POPTR_0011s15170 (11)//POPTR_0011s15080 (11)	scaffold_11:17268726-17268822(+) (11)//scaffold_11:17311845-17311941(-) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.5867.1.S1_at	A	A1TS	POPTR_0005s25300	POPTR_0005s25300 (11)	scaffold_5:23606105-23606140(-) (11)	NA	NA	NA	AT1G04940.1	translocon at the inner envelope membrane of chloroplasts 20 	LOC_Os07g38110.2	"tic20, putative, expressed"	Medtr5g024740.1	"Tic20-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5867.1.S1_s_at	A	A2TS	POPTR_0002s03320	POPTR_0002s03320 (11)//POPTR_0005s25300 (11)	scaffold_2:2033163-2033386(+) (11)//scaffold_5:23606370-23606593(-) (11)	NA	NA	NA	AT1G04940.1	translocon at the inner envelope membrane of chloroplasts 20 	LOC_Os07g38110.2	"tic20, putative, expressed"	Medtr5g024740.1	"Tic20-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5868.1.S1_s_at	A	A1TS	POPTR_0011s12340	POPTR_0011s12340 (11)	scaffold_11:15072807-15074333(-) (11)	NA	NA	NA	AT4G27435.1	Protein of unknown function (DUF1218) 	LOC_Os07g27810.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5869.2.A1_at	A	A1TA	POPTR_0002s20810	POPTR_0002s20810 (10)	scaffold_2:17021613-17022027(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.587.1.A1_s_at	A	A1TS	POPTR_0006s09160	POPTR_0006s09160 (11)	scaffold_6:6768857-6769420(+) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os01g62870.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5870.1.S1_at	A	A1TS	POPTR_0013s08150	POPTR_0013s08150 (10)	scaffold_13:7142457-7143133(+) (10)	NA	Q9VFP2	Protein roadkill	AT3G56230.1	BTB/POZ domain-containing protein 	LOC_Os12g02030.1	"BTB9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr3g097300.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
Ptp.5871.1.S1_at	A	A1TS	POPTR_0004s07320	POPTR_0004s07320 (11)	scaffold_4:6051993-6052774(+) (11)	NA	P50218	Isocitrate dehydrogenase [NADP]	AT1G65930.1	cytosolic NADP+-dependent isocitrate dehydrogenase 	LOC_Os01g46610.1	"dehydrogenase, putative, expressed"	Medtr5g084930.1	"Isocitrate dehydrogenase NADP-dependent, plant "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.5873.1.A1_a_at	A	A1TS	POPTR_0009s06320	POPTR_0009s06320 (11)	scaffold_9:6116895-6117120(+) (11)	NA	P54802	Alpha-N-acetylglucosaminidase	AT5G13690.1	alpha-N-acetylglucosaminidase family / NAGLU family 	LOC_Os04g55730.1	"alpha-N-acetylglucosaminidase, putative, expressed"	Medtr3g039850.1	Alpha-N-acetylglucosaminidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5873.2.A1_s_at	A	A1TS	POPTR_0009s06320	POPTR_0009s06320 (11)	scaffold_9:6117106-6117515(+) (11)	NA	P54802	Alpha-N-acetylglucosaminidase	AT5G13690.1	alpha-N-acetylglucosaminidase family / NAGLU family 	LOC_Os04g55730.1	"alpha-N-acetylglucosaminidase, putative, expressed"	Medtr3g039850.1	Alpha-N-acetylglucosaminidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5877.1.S1_at	A	A1TS	POPTR_0002s02020	POPTR_0002s02020 (11)	scaffold_2:1079411-1079486(-) (11)	NA	Q9FHW7	SKP1-like protein 1B	AT5G42190.1	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 	LOC_Os11g26910.1	"SKP1-like protein 1B, putative, expressed"	Medtr5g022610.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
Ptp.5878.1.S1_at	A	A1TS	POPTR_0018s11770	POPTR_0018s11770 (10)	scaffold_18:12426427-12426944(+) (10)	NA	O65554	CBL-interacting serine/threonine-protein kinase 6	AT4G30960.1	SOS3-interacting protein 3 	LOC_Os01g10890.1	"CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g145620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.588.1.A1_s_at	A	A1TS	POPTR_0005s18950	POPTR_0005s18950 (11)	scaffold_5:17446198-17446389(+) (11)	NA	Q08467	Casein kinase II subunit alpha-1	AT5G67380.1	casein kinase alpha 1 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr8g099310.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.588.2.A1_at	A	A1TS	POPTR_0007s10100	POPTR_0007s10100 (9)	scaffold_7:9830549-9830662(+) (11)	NA	Q08467	Casein kinase II subunit alpha-1	AT5G67380.1	casein kinase alpha 1 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr8g099310.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.588.2.A1_s_at	A	A1TS	POPTR_0007s10100	POPTR_0007s10100 (11)	scaffold_7:9830232-9830519(+) (11)	NA	Q08467	Casein kinase II subunit alpha-1	AT5G67380.1	casein kinase alpha 1 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr8g099310.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.5880.1.S1_at	A	A1TS	POPTR_0003s08580	POPTR_0003s08580 (9)	scaffold_3:9968261-9970305(-) (9)	NA	Q9AST6	Vacuolar protein sorting-associated protein 55 homolog	AT1G32410.5	Vacuolar protein sorting 55 (VPS55) family protein 	LOC_Os02g55980.1	"vacuolar protein sorting 55 family protein, putative, expressed"	Medtr5g014160.1	Vacuolar protein sorting 55 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5881.1.S1_at	A	A1TS	POPTR_0004s07650	POPTR_0004s07650 (11)	scaffold_4:6281198-6283932(-) (11)	NA	P20290	Transcription factor BTF3	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5882.1.S1_at	A	A1TS	POPTR_0002s25150	POPTR_0002s25150 (9)	scaffold_2:22338626-22339606(+) (9)	NA	Q91VC0	dCTP pyrophosphatase 1	AT3G25400.1	"CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). "	LOC_Os02g27810.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	Medtr7g046000.1	MazG nucleotide pyrophosphohydrolase; Pyrophosphohydrolase MazG RS21-C6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5883.1.S1_at	A	A1TS	POPTR_0008s16890	POPTR_0008s16890 (11)	scaffold_8:11347556-11348550(-) (11)	NA	Q9LW57	"Probable plastid-lipid-associated protein 6, chloroplastic"	AT3G23400.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os11g38260.1	"PAP fibrillin family domain containing protein, expressed"	Medtr1g090230.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
Ptp.5885.1.S1_s_at	A	A1TS	POPTR_0001s22980	POPTR_0001s22980 (11)	scaffold_1:22028196-22029494(-) (11)	NA	P93171	Calmodulin	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5887.1.S1_at	A	A1TS	POPTR_0003s16610	POPTR_0003s16610 (11)	scaffold_3:16184408-16184718(+) (11)	NA	Q9ASS6	"Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic"	AT5G13120.1	cyclophilin 20-2 	LOC_Os05g01270.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr7g134340.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.5888.2.S1_a_at	A	A1TS	POPTR_0010s26110	POPTR_0010s26110 (11)	scaffold_10:21456403-21457443(-) (11)	POPTR_0008s00390 (8)	Q8LSN3	Phytochrome-associated serine/threonine protein phosphatase	AT1G50370.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g49690.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g047030.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.589.1.S1_at	A	A1TS	POPTR_0013s01300	POPTR_0013s01300 (9)	scaffold_13:728291-728826(+) (10)	NA	O80492	Probable protein phosphatase 2C 5	AT1G09160.1	Protein phosphatase 2C family protein 	LOC_Os07g49040.1	"protein phosphotase protein, putative, expressed"	Medtr7g138020.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5890.1.S1_at	A	A1TS	POPTR_0017s13910	POPTR_0017s13910 (11)	scaffold_17:14087791-14088505(-) (11)	NA	NA	NA	AT5G16030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5893.1.S1_s_at	A	A1TS	POPTR_0001s04350	POPTR_0001s04350 (11)	scaffold_1:3452550-3453756(+) (11)	NA	Q8WXF0	Serine/arginine-rich splicing factor 12	AT3G13570.1	SC35-like splicing factor 30A 	LOC_Os03g25770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5894.1.S1_s_at	A	A1TS	POPTR_0003s05150	POPTR_0003s05150 (11)	scaffold_3:6357694-6357819(+) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009370.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.5895.1.S1_s_at	A	A1TS	POPTR_0001s21740	POPTR_0001s21740 (11)	scaffold_1:20255870-20256111(-) (11)	NA	P27524	"Chlorophyll a-b binding protein CP24 10A, chloroplastic"	AT1G15820.1	light harvesting complex photosystem II subunit 6 	LOC_Os04g38410.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g008680.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.5896.1.S1_at	A	A1TS	POPTR_0008s19960	POPTR_0008s19960 (11)	scaffold_8:13786748-13788246(+) (11)	NA	P55229	"Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic"	AT5G19220.1	ADP glucose pyrophosphorylase large subunit 1 	LOC_Os03g52460.1	"glucose-1-phosphate adenylyltransferase large subunit, putative, expressed"	Medtr8g146330.1	Nucleotidyl transferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.5897.1.S1_at	A	A1TS	POPTR_0001s33750	POPTR_0001s33750 (11)	scaffold_1:31915355-31916348(+) (11)	NA	Q9CLV5	Naphthoate synthase	AT1G60550.1	enoyl-CoA hydratase/isomerase D 	LOC_Os01g47350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g074190.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.5898.1.S1_s_at	A	A2TS	POPTR_0004s23310	POPTR_0004s23310 (11)//POPTR_0022s00530 (11)	scaffold_22:208370-209246(-) (11)//scaffold_4:22091301-22092027(+) (11)	NA	Q02028	"Stromal 70 kDa heat shock-related protein, chloroplastic"	AT5G49910.1	chloroplast heat shock protein 70-2 	LOC_Os12g14070.1	"DnaK family protein, putative, expressed"	Medtr2g005480.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5899.1.S1_s_at	A	A2TS	POPTR_0006s20090	POPTR_0018s11820 (11)//POPTR_0006s20090 (11)	scaffold_18:12488906-12489850(-) (11)//scaffold_6:19168878-19170353(-) (11)	NA	P93338	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	AT2G24270.3	aldehyde dehydrogenase 11A3 	LOC_Os08g34210.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g145740.1	"NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.590.1.S1_at	A	A1TS	POPTR_0004s22340	POPTR_0004s22340 (9)	scaffold_4:21257035-21257591(+) (9)	NA	P21239	"RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment)"	AT2G28000.1	chaperonin-60alpha 	LOC_Os12g17910.1	"T-complex protein, putative, expressed"	AC233663_8.1	Chaperonin Cpn60 AC233663.2 79149-81923 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.5900.2.S1_a_at	A	A1TS	POPTR_0005s10780	POPTR_0005s10780 (11)	scaffold_5:7738222-7738789(+) (11)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT4G35785.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g50890.1	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5900.2.S1_at	A	A1MS	POPTR_0005s10780	POPTR_0005s10780 (10)	scaffold_5:7738918-7739093(+) (10)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT4G35785.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g50890.1	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.5902.1.S1_s_at	A	A4TS	POPTR_0014s19070	POPTR_0014s19530 (10)//POPTR_0014s19510 (10)//POPTR_0014s19070 (10)//POPTR_0014s19300 (9)	scaffold_14:16826556-16826985(-) (10)//scaffold_14:17202647-17203078(-) (10)//scaffold_14:17327419-17327851(+) (10)//scaffold_14:17361845-17362277(+) (10)	NA	O95243	Methyl-CpG-binding domain protein 4	AT3G07930.3	DNA glycosylase superfamily protein 	LOC_Os09g01290.1	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	NA	NA	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
Ptp.5904.1.S1_s_at	A	A1TS	POPTR_0006s08760	POPTR_0006s08760 (10)	scaffold_6:6447708-6448296(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5905.1.S1_at	A	A1TS	POPTR_0008s01200	POPTR_0008s01200 (9)	scaffold_8:577362-577834(+) (9)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20790.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.5906.1.S1_at	A	A1TS	POPTR_0018s01720	POPTR_0018s01720 (11)	scaffold_18:1572313-1573098(-) (11)	NA	Q9SUI5	"Photosystem I reaction center subunit psaK, chloroplastic"	AT1G30380.1	photosystem I subunit K 	LOC_Os07g05480.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
Ptp.5907.1.S1_at	A	A1TS	POPTR_0001s26940	POPTR_0001s26940 (11)	scaffold_1:25921507-25922913(-) (11)	NA	NA	NA	AT3G52040.1	unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g16550.1	expressed protein	Medtr8g105920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5908.1.S1_at	A	A1TS	POPTR_0004s17630	POPTR_0004s17630 (9)	scaffold_4:17752548-17752928(+) (9)	NA	NA	NA	AT4G38710.1	glycine-rich protein 	LOC_Os02g24330.1	"eukaryotic translation initiation factor 4B, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5909.1.S1_x_at	A	A1TS	POPTR_0010s06190	POPTR_0010s06190 (11)	scaffold_10:7608452-7608971(+) (11)	NA	P80470	"Photosystem II core complex proteins psbY, chloroplastic"	AT1G67740.1	photosystem II BY 	LOC_Os08g02630.1	"photosystem II core complex proteins psbY, chloroplast precursor, putative, expressed"	Medtr3g102830.1	"Photosystem II core complex proteins psbY, chloroplast precursor, putative "	GO:0015979|photosynthesis	GO:0030145|manganese ion binding	GO:0016021|integral to membrane||GO:0009523|photosystem II
Ptp.5911.1.S1_s_at	A	A1TS	POPTR_0003s05110	POPTR_0003s05110 (11)	scaffold_3:6330397-6331926(+) (11)	NA	Q9SUI6	"Photosystem I reaction center subunit VI-2, chloroplastic"	AT1G52230.1	photosystem I subunit H2 	LOC_Os05g48630.2	expressed protein	Medtr2g122810.1	Photosystem I reaction centre subunit VI 	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
Ptp.5913.1.S1_at	A	A1TS	POPTR_0004s04700	POPTR_0004s04700 (11)	scaffold_4:3445015-3445484(+) (11)	NA	Q94ID6	Ethylene-responsive transcription factor 12	AT1G28360.1	ERF domain protein 12 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr2g017810.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.5913.1.S1_s_at	A	A1TS	POPTR_0004s04700	POPTR_0004s04700 (11)	scaffold_4:3445138-3445374(+) (11)	NA	Q94ID6	Ethylene-responsive transcription factor 12	AT1G28360.1	ERF domain protein 12 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr2g017810.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.5915.1.S1_s_at	A	A1TS	POPTR_0014s09180	POPTR_0014s09180 (11)	scaffold_14:6808931-6809431(+) (11)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008800.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5916.1.A1_s_at	A	A1TS	POPTR_0005s27550	POPTR_0005s27550 (11)	scaffold_5:25159130-25159641(-) (11)	POPTR_0002s00840 (6)	P12859	"Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic"	AT1G42970.1	glyceraldehyde-3-phosphate dehydrogenase B subunit 	LOC_Os03g03720.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g160060.1	"Protein of unknown function CP12; Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.5917.1.A1_at	A	A1TS	POPTR_0004s20790	POPTR_0004s20790 (11)	scaffold_4:20190826-20191782(-) (11)	NA	Q9ZE28	Uncharacterized protein RP120	AT5G22350.1	Protein of unknown function (DUF1022) 	LOC_Os02g33230.1	"nucleoside-diphosphate-sugar epimerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5918.2.S1_a_at	A	A1TS	POPTR_0005s22830	POPTR_0005s22830 (11)	scaffold_5:21716305-21717157(-) (11)	NA	Q9SLQ8	"Oxygen-evolving enhancer protein 2, chloroplastic"	AT1G06680.1	photosystem II subunit P-1 	LOC_Os07g04840.1	"PsbP, putative, expressed"	Medtr5g097510.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.5919.2.S1_a_at	A	A1TS	POPTR_0007s10200	POPTR_0007s10200 (11)	scaffold_7:9956076-9956329(-) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT4G37470.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g32270.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g099190.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.592.2.A1_at	A	A1MS	POPTR_0010s01680	POPTR_0010s01680 (11)	scaffold_10:1868973-1869070(-) (11)	NA	Q9FH28	Chaperone protein dnaJ 49	AT5G49060.1	"Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) "	LOC_Os05g30130.1	"chaperone protein dnaJ 49, putative, expressed"	Medtr7g139960.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.592.2.A1_s_at	A	A1TS	POPTR_0010s01680	POPTR_0010s01680 (11)	scaffold_10:1869056-1869355(-) (11)	NA	Q9FH28	Chaperone protein dnaJ 49	AT5G49060.1	"Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) "	LOC_Os05g30130.1	"chaperone protein dnaJ 49, putative, expressed"	Medtr7g139960.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.5920.1.S1_at	A	A1TS	POPTR_0006s08800	POPTR_0006s08800 (11)	scaffold_6:6479988-6480798(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5922.1.S1_s_at	A	A1TS	POPTR_0001s13100	POPTR_0001s13100 (11)	scaffold_1:10183287-10183996(+) (11)	NA	Q03200	Light-regulated protein	AT3G26740.1	CCR-like 	LOC_Os01g01340.1	"light-induced protein 1-like, putative, expressed"	Medtr7g096990.1	Light regulated Lir1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5925.2.S1_a_at	A	A4TS	POPTR_0002s23510	POPTR_0002s23510 (11)//POPTR_0002s23530 (11)//POPTR_0166s00200 (11)//POPTR_0166s00210 (10)	scaffold_166:6731-6938(-) (11)//scaffold_166:31618-31825(-) (11)//scaffold_2:21037368-21037575(-) (11)//scaffold_2:21074218-21074425(-) (11)	NA	P40691	Auxin-induced protein PCNT115	AT1G60690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os04g26910.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr7g021880.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.5926.2.S1_at	A	A1MS	POPTR_0003s16490	POPTR_0003s16490 (9)	scaffold_3:16086813-16087012(-) (9)	NA	Q53NF7	NAC domain-containing protein 71	AT5G13180.1	NAC domain containing protein 83 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.5927.1.S1_s_at	A	A1TS	POPTR_0006s05130	POPTR_0006s05130 (11)	scaffold_6:3562577-3563007(-) (11)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5928.1.S1_at	A	A1TS	POPTR_0005s06420	POPTR_0005s06420 (11)	scaffold_5:4287287-4287792(+) (11)	NA	P49107	"Photosystem I reaction center subunit N, chloroplastic"	AT5G64040.1	"photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) "	LOC_Os12g08770.1	"photosystem I reaction center subunit N, chloroplast precursor, putative, expressed"	Medtr3g144130.1	Photosystem I reaction centre subunit N 	GO:0015979|photosynthesis	GO:0005515|protein binding	GO:0042651|thylakoid membrane||GO:0009522|photosystem I
Ptp.5929.1.S1_at	A	A1TS	POPTR_0014s10550	POPTR_0014s10550 (11)	scaffold_14:7869776-7870314(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5929.1.S1_s_at	A	A1TS	POPTR_0014s10550	POPTR_0014s10550 (11)	scaffold_14:7870301-7871032(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5930.1.S1_s_at	A	A1TS	POPTR_0005s16180	POPTR_0005s16180 (11)	scaffold_5:12859747-12860222(+) (11)	NA	P36859	Nitrate reductase [NADH]	AT1G37130.1	nitrate reductase 2 	LOC_Os08g36480.1	"nitrate reductase, putative, expressed"	Medtr3g098350.1	Mo-co oxidoreductase dimerisation domain 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0030151|molybdenum ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.5932.1.S1_s_at	A	A1TS	POPTR_0010s19610	POPTR_0010s19610 (11)	scaffold_10:17490091-17491134(-) (11)	NA	Q39033	Phosphoinositide phospholipase C 2	AT3G08510.2	phospholipase C 2 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr3g093840.1	C2; EF-Hand type; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
Ptp.5933.1.S1_s_at	A	A1TS	POPTR_0001s27960	POPTR_0001s27960 (11)	scaffold_1:26794775-26794819(+) (11)	NA	P18025	Tubulin beta-1 chain	AT5G62700.1	tubulin beta chain 3 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5933.1.S1_x_at	A	A1TS	POPTR_0001s27960	POPTR_0001s27960 (10)	scaffold_1:26793622-26794821(+) (10)	NA	P18025	Tubulin beta-1 chain	AT5G62700.1	tubulin beta chain 3 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.5934.1.S1_s_at	A	A1TS	POPTR_0002s09930	POPTR_0002s09930 (11)	scaffold_2:7122442-7122962(+) (11)	NA	Q9ZPE4	F-box protein FBW2	AT4G08980.5	F-BOX WITH WD-40 2 	LOC_Os02g52130.9	"OsFBX61 - F-box domain containing protein, expressed"	Medtr5g073570.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5935.1.S1_at	A	A1TS	POPTR_0002s25390	POPTR_0002s25390 (11)	scaffold_2:22463263-22463394(+) (11)	NA	Q9SZD4	26S proteasome regulatory subunit 4 homolog A	AT4G29040.1	regulatory particle AAA-ATPase 2A 	LOC_Os03g18690.1	"26S protease regulatory subunit 4, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.5936.2.A1_a_at	A	A1TS	POPTR_0003s19560	POPTR_0003s19560 (11)	scaffold_3:18256382-18256548(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g16620.5	expressed protein	Medtr3g006210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.594.2.A1_a_at	A	A1TS	POPTR_0017s08150	POPTR_0017s08150 (11)	scaffold_17:6599055-6599160(+) (11)	NA	Q99460	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.594.2.A1_at	A	A1TS	POPTR_0017s08150	POPTR_0017s08150 (11)	scaffold_17:6598587-6599130(+) (11)	NA	Q99460	26S proteasome non-ATPase regulatory subunit 1	AT2G32730.1	"26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit "	LOC_Os08g12820.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g156260.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5942.1.S1_x_at	A	A1TS	POPTR_0006s13980	POPTR_0006s13980 (11)	scaffold_6:11219293-11220592(+) (11)	NA	Q6QPJ6	"Peroxiredoxin Q, chloroplastic"	AT3G26060.1	Thioredoxin superfamily protein 	LOC_Os06g09610.2	"peroxiredoxin, putative, expressed"	Medtr8g133010.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.5943.1.S1_at	A	A1TS	POPTR_0001s10190	POPTR_0001s10190 (10)	scaffold_1:7906254-7906818(+) (10)	NA	Q08CY1	Kelch-like protein 22	AT3G61600.1	POZ/BTB containin G-protein 1 	LOC_Os02g16000.1	"E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
Ptp.5945.1.S1_s_at	A	A1TS	POPTR_0002s05180	POPTR_0002s05180 (9)	scaffold_2:3355155-3355559(-) (9)	NA	NA	NA	AT4G02715.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g084110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5948.1.S1_at	A	A1TS	POPTR_0012s11410	POPTR_0012s11410 (11)	scaffold_12:11856420-11858135(-) (11)	NA	B0JQV0	Putative pterin-4-alpha-carbinolamine dehydratase	AT5G51110.1	Transcriptional coactivator/pterin dehydratase 	LOC_Os01g47420.1	"pterin-4-alpha-carbinolamine dehydratase, putative, expressed"	Medtr5g019890.1	Transcriptional coactivator/pterin dehydratase 	GO:0006729|tetrahydrobiopterin biosynthetic process	GO:0008124|4-alpha-hydroxytetrahydrobiopterin dehydratase activity	NA
Ptp.5950.1.S1_at	A	A1TS	POPTR_0014s06830	POPTR_0014s06830 (11)	scaffold_14:5144185-5144226(-) (11)	NA	NA	NA	AT2G45520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 260 Blast hits to 238 proteins in 75 species: Archae - 0; Bacteria - 6; Metazoa - 94; Fungi - 40; Plants - 38; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). 	LOC_Os06g03920.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5950.1.S1_s_at	A	A1TS	POPTR_0014s06830	POPTR_0014s06830 (11)	scaffold_14:5144162-5144380(-) (11)	NA	NA	NA	AT2G45520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 260 Blast hits to 238 proteins in 75 species: Archae - 0; Bacteria - 6; Metazoa - 94; Fungi - 40; Plants - 38; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). 	LOC_Os06g03920.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5955.1.S1_at	A	A1TS	POPTR_0017s04740	POPTR_0017s04740 (10)	scaffold_17:3644149-3645140(+) (10)	NA	Q80Y75	DnaJ homolog subfamily B member 13	AT2G20560.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	Medtr4g108870.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.5956.3.S1_at	A	A1TS	POPTR_0010s20810	POPTR_0010s20810 (9)	scaffold_10:18261361-18261396(+) (9)	NA	Q7X9A0	"Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic"	AT2G39730.1	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.5958.1.S1_s_at	A	A1TS	POPTR_0005s13860	POPTR_0005s13860 (11)	scaffold_5:10851292-10851490(-) (11)	NA	Q40459	"Oxygen-evolving enhancer protein 1, chloroplastic"	AT5G66570.1	PS II oxygen-evolving complex 1 	LOC_Os01g31690.1	"oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed"	AC157372_6.1	Photosystem II manganese-stabilizing protein PsbO AC157372.2 27120-29314 F EGN_Mt090430 200	GO:0042549|photosystem II stabilization	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.5959.1.A1_at	A	A1TS	POPTR_0005s13860	POPTR_0005s13860 (11)	scaffold_5:10850696-10850735(-) (11)	NA	Q40459	"Oxygen-evolving enhancer protein 1, chloroplastic"	AT5G66570.1	PS II oxygen-evolving complex 1 	LOC_Os01g31690.1	"oxygen-evolving enhancer protein 1, chloroplast precursor, putative, expressed"	AC157372_6.1	Photosystem II manganese-stabilizing protein PsbO AC157372.2 27120-29314 F EGN_Mt090430 200	GO:0042549|photosystem II stabilization	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.5961.1.S1_a_at	A	A1TS	POPTR_0001s31490	POPTR_0001s31490 (11)	scaffold_1:29798526-29798627(+) (11)	NA	Q4PE39	Protein transport protein SEC23	AT1G05520.1	Sec23/Sec24 protein transport family protein 	LOC_Os11g24560.1	"protein transport protein, putative, expressed"	Medtr3g104400.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
Ptp.5961.1.S1_at	A	A1TS	POPTR_0001s31490	POPTR_0001s31490 (11)	scaffold_1:29798336-29798488(+) (11)	NA	Q4PE39	Protein transport protein SEC23	AT1G05520.1	Sec23/Sec24 protein transport family protein 	LOC_Os11g24560.1	"protein transport protein, putative, expressed"	Medtr3g104400.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
Ptp.5962.1.S1_at	A	A1TS	POPTR_0008s01920	POPTR_0008s01920 (11)	scaffold_8:915949-918177(+) (11)	POPTR_0010s24890 (6)	Q4QQV8	Charged multivesicular body protein 5	AT3G10640.1	SNF7 family protein 	LOC_Os05g01250.1	"SNF7 domain containing protein, putative, expressed"	Medtr1g112210.1	Snf7 	GO:0015031|protein transport	NA	NA
Ptp.5963.1.S1_at	A	A1TS	POPTR_0010s22490	POPTR_0010s22490 (10)	scaffold_10:19395129-19395164(-) (10)	NA	Q4V9P0	S-adenosylmethionine mitochondrial carrier protein	AT2G35800.1	mitochondrial substrate carrier family protein 	LOC_Os11g01270.1	"mitochondrial substrate carrier family protein, putative, expressed"	Medtr1g122080.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5963.1.S1_s_at	A	A1TS	POPTR_0010s22490	POPTR_0010s22490 (11)	scaffold_10:19395082-19396067(-) (11)	NA	Q4V9P0	S-adenosylmethionine mitochondrial carrier protein	AT2G35800.1	mitochondrial substrate carrier family protein 	LOC_Os11g01270.1	"mitochondrial substrate carrier family protein, putative, expressed"	Medtr1g122080.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5965.1.S1_at	A	A2TS	POPTR_0001s23450	POPTR_0001s23450 (11)//POPTR_0001s23460 (11)	scaffold_1:22809803-22810172(-) (11)//scaffold_1:22867309-22867678(-) (11)	NA	A2SY66	Vicianin hydrolase (Fragment)	AT2G44480.1	beta glucosidase 17 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr4g024200.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.5965.1.S1_s_at	A	A2TS	POPTR_0001s23440	POPTR_0001s23440 (11)//POPTR_0001s23460 (11)	scaffold_1:22804396-22804780(-) (11)//scaffold_1:22866878-22867262(-) (11)	NA	A2SY66	Vicianin hydrolase (Fragment)	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39880.1	"Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed"	Medtr3g031570.1	"Glycoside hydrolase, family 1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5966.1.S1_at	A	A1TS	POPTR_0018s07160	POPTR_0018s07160 (11)	scaffold_18:7339230-7339659(-) (11)	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
Ptp.5966.1.S1_s_at	A	A1TS	POPTR_0018s07160	POPTR_0018s07160 (11)	scaffold_18:7339282-7339531(-) (11)	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
Ptp.5968.1.A1_at	A	A1TS	POPTR_0013s04950	POPTR_0013s04950 (10)	scaffold_13:3470551-3471113(+) (10)	NA	NA	NA	AT1G08530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g24240.1	expressed protein	Medtr4g107840.1	"T27G7.21, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.597.1.A1_s_at	A	A1TS	POPTR_0007s08590	POPTR_0007s08590 (11)	scaffold_7:7440694-7440953(-) (11)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.5970.1.S1_at	A	A1TS	POPTR_0013s14910	POPTR_0013s14910 (11)	scaffold_13:14994690-14995038(+) (11)	NA	O54922	Exocyst complex component 7	AT5G58430.1	exocyst subunit exo70 family protein B1 	LOC_Os05g39610.1	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr5g081630.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
Ptp.5972.1.S1_s_at	A	A1TS	POPTR_0001s15140	POPTR_0001s15140 (11)	scaffold_1:11980278-11981954(-) (11)	NA	NA	NA	AT4G17600.1	Chlorophyll A-B binding family protein 	LOC_Os02g03330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5973.1.S1_s_at	A	A1TS	POPTR_0004s04720	POPTR_0004s04720 (11)	scaffold_4:3468458-3468966(-) (11)	NA	Q9LW49	Ethylene-responsive transcription factor 4	AT5G44210.1	erf domain protein 9 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr2g017860.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.5974.1.S1_s_at	A	A1TS	POPTR_0005s26610	POPTR_0005s26610 (11)	scaffold_5:24554343-24555895(+) (11)	NA	Q0JIL1	Probable nucleoredoxin 2	AT1G60420.1	DC1 domain-containing protein 	LOC_Os01g58194.1	"protein disulfide isomerase, putative, expressed"	Medtr3g157120.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5975.2.S1_at	A	A1MS	POPTR_0016s00310	POPTR_0016s00310 (11)	scaffold_16:48306-48841(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5979.1.S1_s_at	A	A1TS	POPTR_0001s12230	POPTR_0001s12230 (11)	scaffold_1:9473685-9474881(-) (11)	NA	Q9SCY2	"FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplastic"	AT5G45680.1	FK506-binding protein 13 	LOC_Os06g45340.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g140460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.598.1.A1_a_at	A	A1TS	POPTR_0015s00980	POPTR_0015s00980 (11)	scaffold_15:576143-576393(+) (11)	NA	P09379	GTPase-activating protein GYP7	AT3G49350.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.5980.3.A1_a_at	A	A1TS	POPTR_0006s19310	POPTR_0006s19310 (11)	scaffold_6:18336736-18337087(+) (11)	NA	Q9ZP41	EG45-like domain containing protein	AT2G18660.1	plant natriuretic peptide A 	LOC_Os09g29690.1	"beta-expansin precursor, putative, expressed"	Medtr6g084060.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5981.1.S1_a_at	A	A1TS	POPTR_0014s06210	POPTR_0014s06210 (11)	scaffold_14:4728290-4728427(-) (11)	NA	O22152	Axial regulator YABBY 1	AT2G45190.1	Plant-specific transcription factor YABBY family protein 	LOC_Os04g45330.1	"YABBY domain containing protein, putative, expressed"	Medtr8g106280.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5982.1.S1_at	A	A1TS	POPTR_0018s01310	POPTR_0018s01310 (11)	scaffold_18:1267914-1268075(-) (11)	NA	Q9C944	Probable histone H2A variant 3	AT1G52740.1	histone H2A protein 9 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g013390.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.5984.1.S1_s_at	A	A1TS	POPTR_0006s24900	POPTR_0006s24900 (11)	scaffold_6:23414782-23415173(+) (11)	NA	P49043	Vacuolar-processing enzyme	AT4G32940.1	gamma vacuolar processing enzyme 	LOC_Os01g37910.3	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr3g140280.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
Ptp.5985.1.S1_at	A	A1TS	POPTR_0010s12630	POPTR_0010s12630 (11)	scaffold_10:12610164-12610537(-) (11)	NA	NA	NA	AT3G03280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17350.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g47960.1	expressed protein	Medtr1g137740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5986.1.S1_s_at	A	A1TS	POPTR_0006s11010	POPTR_0006s11010 (11)	scaffold_6:8358163-8358676(+) (11)	NA	Q39030	Serine/threonine-protein kinase AtPK2/AtPK19	AT3G08720.2	serine/threonine protein kinase 2 	LOC_Os03g21620.1	"AGC_AGC_other_RS6K_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.5987.1.A1_at	A	A1TS	POPTR_0007s13110	POPTR_0007s13110 (11)	scaffold_7:13272460-13273800(+) (11)	NA	Q43187	Soluble inorganic pyrophosphatase	AT1G01050.1	pyrophosphorylase 1 	LOC_Os05g02310.1	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr5g020750.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.5988.1.S1_at	A	A1TS	POPTR_0014s11580	POPTR_0014s11580 (10)	scaffold_14:8583793-8584015(+) (10)	NA	A6Q0K5	Calvin cycle protein CP12	AT3G62410.1	CP12 domain-containing protein 2 	LOC_Os03g19380.1	"calvin cycle protein CP12, putative, expressed"	Medtr1g106710.1	Protein of unknown function CP12 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5989.1.S1_s_at	A	A1TS	POPTR_0010s06670	POPTR_0010s06670 (11)	scaffold_10:7965648-7967286(+) (11)	NA	O32107	Uncharacterized membrane protein yuiD	AT1G67600.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os01g67560.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.599.1.S1_at	A	A1TS	POPTR_0005s25760	POPTR_0005s25760 (9)	scaffold_5:23962861-23962926(+) (9)	NA	Q56XU4	Zinc finger CCCH domain-containing protein 6	AT1G19860.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os04g56750.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr1g024110.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.5990.1.S1_at	A	A1TS	POPTR_0006s05810	POPTR_0006s05810 (11)	scaffold_6:4104270-4104711(-) (11)	NA	NA	NA	AT2G42220.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os09g10750.1	"rhodanese-like, putative, expressed"	Medtr7g111490.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5992.1.S1_at	A	A1TS	POPTR_0001s38810	POPTR_0001s38810 (11)	scaffold_1:38085846-38086337(-) (11)	NA	Q9Y5Z4	Heme-binding protein 2	AT1G17100.1	SOUL heme-binding family protein 	LOC_Os01g11230.1	"SOUL heme-binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.5993.1.S1_a_at	A	A1TS	POPTR_0015s11040	POPTR_0015s11040 (9)	scaffold_15:11731627-11733041(+) (9)	NA	O82743	Agamous-like MADS-box protein AGL19	AT4G22950.1	AGAMOUS-like 19 	LOC_Os04g49150.1	"OsMADS17 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.5995.1.S1_at	A	A1TS	POPTR_0006s24050	POPTR_0006s24050 (9)	scaffold_6:22743563-22744061(+) (9)	NA	Q8VWQ5	Probable WRKY transcription factor 50	AT5G26170.1	WRKY DNA-binding protein 50 	LOC_Os05g46020.1	"OsWRKY7 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g019360.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.5996.1.S1_at	A	A1TS	POPTR_0007s04490	POPTR_0007s04490 (10)	scaffold_7:2771451-2771507(-) (10)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT5G63940.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os12g07990.1	"protein kinase family protein, putative"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.5996.2.S1_s_at	A	A1TS	POPTR_0010s06820	POPTR_0010s06820 (11)	scaffold_10:8091861-8092117(+) (11)	NA	Q9LIP2	Proteasome subunit beta type-5-B	AT3G26340.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os06g06030.1	"peptidase, T1 family, putative, expressed"	Medtr3g117480.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.5998.1.S1_at	A	A1TS	POPTR_0016s10680	POPTR_0016s10680 (11)	scaffold_16:8973706-8974201(+) (11)	NA	NA	NA	AT2G36895.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 32 Blast hits to 32 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g05800.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.60.1.S1_at	A	A1TS	POPTR_0012s14380	POPTR_0012s14380 (11)	scaffold_12:14291183-14292120(-) (11)	NA	Q54NB6	FK506-binding protein 4	AT4G25340.1	FK506 BINDING PROTEIN 53 	LOC_Os04g36890.2	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g008740.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.600.1.S1_at	A	A1TS	POPTR_0001s10980	POPTR_0001s10980 (11)	scaffold_1:8512753-8512873(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01960.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6000.1.S1_at	A	A1TS	POPTR_0010s11910	POPTR_0010s11910 (11)	scaffold_10:12037596-12038639(-) (11)	NA	Q9LQU4	Uncharacterized protein At1g14870	AT1G14870.1	PLANT CADMIUM RESISTANCE 2 	LOC_Os02g36940.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr5g017670.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6002.1.S1_s_at	A	A1TS	POPTR_0003s09160	POPTR_0003s09160 (11)	scaffold_3:10499162-10499204(+) (11)	NA	NA	NA	AT4G17900.1	PLATZ transcription factor family protein 	LOC_Os04g50120.1	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6005.1.S1_at	A	A1TS	POPTR_0005s18460	POPTR_0005s18460 (11)	scaffold_5:16673047-16674225(-) (11)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6007.1.S1_at	A	A1TS	POPTR_0002s05060	POPTR_0002s05060 (10)	scaffold_2:3280179-3280537(+) (10)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr5g006700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6008.1.S1_s_at	A	A1TS	POPTR_0006s29020	POPTR_0006s29020 (11)	scaffold_6:26517569-26518179(+) (11)	NA	O59811	Zinc finger protein C550.15c	AT4G31420.1	Zinc finger protein 622 	LOC_Os06g47840.1	"ZOS6-08 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6009.1.S1_at	A	A1TS	POPTR_0012s14730	POPTR_0012s14730 (11)	scaffold_12:14513171-14516612(+) (11)	NA	Q9LTV6	"Peroxisomal 2,4-dienoyl-CoA reductase"	AT3G12800.1	short-chain dehydrogenase-reductase B 	LOC_Os04g52400.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr7g139420.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.6011.1.S1_at	A	A1TS	POPTR_0010s11780	POPTR_0010s11780 (11)	scaffold_10:11945551-11945808(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G03400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g14400.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	AC233676_15.1	2OG-Fe(II) oxygenase AC233676.2 68774-66756 F EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6012.1.S1_s_at	A	A1TS	POPTR_0002s12430	POPTR_0002s12430 (11)	scaffold_2:9221255-9221476(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6012.2.S1_at	A	A1TA	POPTR_0001s38070	POPTR_0001s38070 (11)	scaffold_1:37105470-37105588(-) (11)	NA	NA	NA	AT4G21740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g136820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6013.1.A1_s_at	A	A1TS	POPTR_0019s03660	POPTR_0019s03660 (11)	scaffold_19:3742464-3742902(+) (11)	NA	Q86YJ7	Ankyrin repeat domain-containing protein 13B	AT3G04470.1	Ankyrin repeat family protein 	LOC_Os02g56530.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6014.1.S1_at	A	A1TS	POPTR_0014s13480	POPTR_0014s13480 (11)	scaffold_14:9926414-9927005(+) (11)	NA	NA	NA	AT2G48160.1	Tudor/PWWP/MBT domain-containing protein 	LOC_Os03g24339.1	"PWWP domain containing protein, expressed"	Medtr1g086720.1	PWWP; Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6016.1.S1_at	A	A1TS	POPTR_0014s02410	POPTR_0014s02410 (11)	scaffold_14:2008734-2008894(-) (11)	NA	P43297	Cysteine proteinase RD21a	AT5G43060.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6016.1.S1_s_at	A	A1TS	POPTR_0014s02410	POPTR_0014s02410 (11)	scaffold_14:2008378-2009066(-) (11)	NA	P43297	Cysteine proteinase RD21a	AT5G43060.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6017.1.S1_a_at	A	A1TS	POPTR_0001s21140	POPTR_0001s21140 (11)	scaffold_1:19487037-19487216(-) (11)	NA	NA	NA	AT3G15840.5	post-illumination chlorophyll fluorescence increase 	LOC_Os03g38950.1	"chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed"	Medtr4g005610.1	"PIFI, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6017.3.S1_at	A	A1MS	POPTR_0001s21140	POPTR_0001s21140 (10)	scaffold_1:19486724-19486977(-) (10)	NA	NA	NA	AT3G15840.5	post-illumination chlorophyll fluorescence increase 	LOC_Os03g38950.1	"chloroplast post-illumination chlorophyll fluorescence increase protein, putative, expressed"	Medtr4g005610.1	"PIFI, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6019.2.S1_s_at	A	A2TS	POPTR_0002s21290	POPTR_0002s21290 (11)//POPTR_0014s15210 (11)	scaffold_14:11309914-11310011(+) (11)//scaffold_2:17691945-17692042(+) (11)	NA	Q6Z1D5	Autophagy-related protein 8C	AT2G05630.1	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6019.2.S1_x_at	A	A1TS	POPTR_0002s21290	POPTR_0002s21290 (11)	scaffold_2:17690843-17692404(+) (11)	NA	Q6Z1D5	Autophagy-related protein 8C	AT2G05630.1	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6021.1.S1_at	A	A1TS	POPTR_0010s02990	POPTR_0010s02990 (11)	scaffold_10:3501825-3502514(-) (11)	NA	Q94A20	BI1-like protein	AT4G15470.1	Bax inhibitor-1 family protein 	LOC_Os05g33360.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr2g026190.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6022.1.S1_s_at	A	A1TS	POPTR_0004s18000	POPTR_0004s18000 (11)	scaffold_4:18018090-18019087(+) (11)	NA	O24030	Proteasome subunit alpha type-7	AT5G66140.1	proteasome alpha subunit D2 	LOC_Os08g43540.1	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.6023.1.S1_at	A	A1TS	POPTR_0003s11030	POPTR_0003s11030 (11)	scaffold_3:11885369-11885826(+) (11)	NA	Q8VYK7	Autophagy-related protein 8f	AT4G16520.2	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6024.1.S1_at	A	A1TS	POPTR_0006s26570	POPTR_0006s26570 (11)	scaffold_6:24746919-24749235(+) (11)	NA	Q0DWQ7	Cyclin-B1-2	AT1G67250.1	Proteasome maturation factor UMP1 	LOC_Os02g55640.1	"proteasome maturation factor UMP1 family protein, expressed"	Medtr5g008120.1	Proteasome maturation factor UMP1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6025.1.S1_at	A	A1TS	POPTR_0011s00740	POPTR_0011s00740 (11)	scaffold_11:372934-373696(-) (11)	NA	O95563	Brain protein 44	AT4G22310.1	Uncharacterised protein family (UPF0041) 	LOC_Os07g26700.1	"UPF0041 domain containing protein, putative, expressed"	Medtr2g029550.1	Protein of unknown function UPF0041 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6025.1.S1_s_at	A	A1TS	POPTR_0011s00740	POPTR_0011s00740 (11)	scaffold_11:371002-372930(-) (11)	NA	O95563	Brain protein 44	AT4G22310.1	Uncharacterised protein family (UPF0041) 	LOC_Os07g26700.1	"UPF0041 domain containing protein, putative, expressed"	Medtr2g029550.1	Protein of unknown function UPF0041 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6026.1.S1_at	A	A1TS	POPTR_0012s07350	POPTR_0012s07350 (11)	scaffold_12:8233749-8234302(-) (11)	NA	Q9LV11	"ATPase 11, plasma membrane-type"	AT5G62670.1	H(+)-ATPase 11 	LOC_Os12g44150.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.6027.1.S1_at	A	A2TS	POPTR_0022s00900	POPTR_0590s00200 (11)//POPTR_0022s00900 (11)	scaffold_22:491354-491658(+) (11)//scaffold_590:184-488(+) (11)	NA	Q2V3L3	Uncharacterized zinc finger protein At4g06634	AT4G06634.1	zinc finger (C2H2 type) family protein 	LOC_Os02g34680.1	"ZOS2-09 - C2H2 zinc finger protein, expressed"	Medtr2g006510.1	"Basic-leucine zipper (bZIP) transcription factor; Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6027.1.S1_s_at	A	A3TS	POPTR_0022s00900	POPTR_0590s00200 (11)//POPTR_0022s00900 (11)//POPTR_0004s23050 (9)	scaffold_22:491192-491435(+) (11)//scaffold_4:21852187-21852400(-) (9)//scaffold_590:22-265(+) (11)	NA	Q2V3L3	Uncharacterized zinc finger protein At4g06634	AT4G06634.1	zinc finger (C2H2 type) family protein 	LOC_Os02g34680.1	"ZOS2-09 - C2H2 zinc finger protein, expressed"	Medtr2g006510.1	"Basic-leucine zipper (bZIP) transcription factor; Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6027.2.S1_a_at	A	A1TS	POPTR_0022s00900	POPTR_0022s00900 (11)	scaffold_22:486424-487256(+) (11)	NA	Q2V3L3	Uncharacterized zinc finger protein At4g06634	AT4G06634.1	zinc finger (C2H2 type) family protein 	LOC_Os02g34680.1	"ZOS2-09 - C2H2 zinc finger protein, expressed"	Medtr2g006510.1	"Basic-leucine zipper (bZIP) transcription factor; Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6029.1.S1_at	A	A1TS	POPTR_0002s19670	POPTR_0002s19670 (11)	scaffold_2:15616608-15616988(+) (11)	NA	Q9ZSM8	Histone-lysine N-methyltransferase EZA1	AT4G02020.1	SET domain-containing protein 	LOC_Os03g19480.1	"SET domain containing protein, expressed"	Medtr1g106640.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.603.1.A1_at	A	A1TS	POPTR_0001s29370	POPTR_0001s29370 (11)	scaffold_1:28071669-28071955(-) (11)	NA	Q9LXC9	"Soluble inorganic pyrophosphatase 1, chloroplastic"	AT5G09650.1	pyrophosphorylase 6 	LOC_Os02g52940.2	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr2g010460.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.603.2.A1_at	A	A1MS	POPTR_0001s29370	POPTR_0001s29370 (11)	scaffold_1:28072403-28072523(-) (11)	NA	Q9LXC9	"Soluble inorganic pyrophosphatase 1, chloroplastic"	AT5G09650.1	pyrophosphorylase 6 	LOC_Os02g52940.2	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr2g010460.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.6030.1.S1_at	A	A1TS	POPTR_0011s14350	POPTR_0011s14350 (10)	scaffold_11:16795460-16795876(-) (10)	NA	Q9SHI1	"Translation initiation factor IF-2, chloroplastic"	AT1G17220.1	"Translation initiation factor 2, small GTP-binding protein "	LOC_Os05g49970.2	"translation initiation factor IF-2, chloroplast precursor, putative, expressed"	Medtr2g077230.1	"Elongation factor Tu, domain 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0003743|translation initiation factor activity	NA
Ptp.6031.1.S1_s_at	A	A1TS	POPTR_0008s00350	POPTR_0008s00350 (11)	scaffold_8:120721-121029(+) (11)	NA	P34899	"Serine hydroxymethyltransferase, mitochondrial"	AT4G37930.1	serine transhydroxymethyltransferase 1 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.6032.1.S1_at	A	A1TS	POPTR_0008s09710	POPTR_0008s09710 (11)	scaffold_8:5996015-5997190(-) (11)	NA	Q9QZH3	Peptidyl-prolyl cis-trans isomerase E	AT1G13690.1	ATPase E1 	LOC_Os03g40310.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g047590.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6034.1.S1_s_at	A	A1TS	POPTR_0018s09210	POPTR_0018s09210 (10)	scaffold_18:10085385-10085894(-) (10)	NA	Q53HY2	Ninja-family protein mc410	AT4G28910.3	novel interactor of JAZ 	LOC_Os05g48500.3	expressed protein	Medtr6g098770.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6038.1.S1_at	A	A1TS	POPTR_0017s08260	POPTR_0017s08260 (11)	scaffold_17:6732844-6733035(-) (11)	NA	NA	NA	AT3G24100.1	Uncharacterised protein family SERF 	LOC_Os05g33700.1	4F5 protein family protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6039.1.S1_at	A	A1TS	POPTR_0014s08240	POPTR_0014s08240 (11)	scaffold_14:6119703-6121536(-) (11)	NA	P42749	Ubiquitin-conjugating enzyme E2 5	AT1G63800.1	ubiquitin-conjugating enzyme 5 	LOC_Os10g31000.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g125340.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.604.1.S1_at	A	A1TS	POPTR_0015s07490	POPTR_0015s07490 (11)	scaffold_15:8758481-8759412(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT1G74690.1	IQ-domain 31 	LOC_Os05g45930.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g112590.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6043.2.S1_a_at	A	A1TS	POPTR_0005s10850	POPTR_0005s10850 (11)	scaffold_5:7805109-7806937(-) (11)	NA	P27626	Senescence-associated protein DIN1	AT4G35770.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os06g50930.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr5g023140.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6046.1.A1_at	A	A1TS	POPTR_0010s11780	POPTR_0010s11780 (11)	scaffold_10:11943799-11944487(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G03400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g14400.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	AC233676_15.1	2OG-Fe(II) oxygenase AC233676.2 68774-66756 F EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6048.1.S1_at	A	A2TS	POPTR_0015s06370	POPTR_0015s06410 (11)//POPTR_0015s06370 (11)	scaffold_15:7049297-7050682(-) (11)//scaffold_15:7100052-7101447(-) (11)	NA	NA	NA	AT1G73885.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g50270.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6052.1.S1_s_at	A	A1TS	POPTR_0008s20130	POPTR_0008s20130 (11)	scaffold_8:13930648-13930688(+) (11)	NA	Q6DBV4	Probable phosphatase phospho1	AT1G17710.1	Pyridoxal phosphate phosphatase-related protein 	LOC_Os01g52230.1	"phosphoethanolamine/phosphocholine phosphatase, putative, expressed"	AC235757_53.1	"HAD-superfamily subfamily IB hydrolase, hypothetical 1 AC235757.1 226999-229678 E EGN_Mt090430 200"	NA	GO:0016791|phosphatase activity	NA
Ptp.6053.1.S1_at	A	A1TS	POPTR_0012s01850	POPTR_0012s01850 (11)	scaffold_12:1386058-1386147(+) (11)	NA	NA	NA	AT5G24165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6053.1.S1_s_at	A	A1TS	POPTR_0012s01850	POPTR_0012s01850 (11)	scaffold_12:1383876-1386036(+) (11)	NA	NA	NA	AT5G24165.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G23885.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6055.1.S1_at	A	A1TS	POPTR_0007s11070	POPTR_0007s11070 (10)	scaffold_7:11314874-11323973(+) (10)	POPTR_0007s11040 (7)	Q9MTQ6	Red chlorophyll catabolite reductase (Fragment)	AT4G37000.1	accelerated cell death 2 (ACD2) 	LOC_Os10g25030.1	"red chlorophyll catabolite reductase, putative, expressed"	Medtr5g103790.2	Red chlorophyll catabolite reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6056.1.S1_at	A	A1TS	POPTR_0001s40120	POPTR_0001s40120 (9)	scaffold_1:39432448-39433925(+) (9)	NA	Q9H2M9	Rab3 GTPase-activating protein non-catalytic subunit	AT3G14910.1	unknown protein; Has 158 Blast hits to 158 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os09g14680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6057.1.S1_at	A	A1TS	POPTR_0001s08410	POPTR_0001s08410 (11)	scaffold_1:6418063-6418155(-) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT4G22880.2	leucoanthocyanidin dioxygenase 	LOC_Os01g27490.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr5g011370.1	ArgE/dapE/ACY1/CPG2/yscS; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6057.1.S1_s_at	A	A1TS	POPTR_0001s08410	POPTR_0001s08410 (11)	scaffold_1:6417746-6418318(-) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT4G22880.2	leucoanthocyanidin dioxygenase 	LOC_Os01g27490.1	"leucoanthocyanidin dioxygenase, putative, expressed"	Medtr5g011370.1	ArgE/dapE/ACY1/CPG2/yscS; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.606.1.A1_at	A	A1TS	POPTR_0014s12490	POPTR_0014s12490 (11)	scaffold_14:9194757-9195165(-) (11)	NA	NA	NA	AT1G02870.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os05g30420.1	expressed protein	Medtr1g108530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6060.1.S1_at	A	A1TS	POPTR_0014s13560	POPTR_0014s13560 (11)	scaffold_14:9973659-9974452(+) (11)	NA	O80860	"ATP-dependent zinc metalloprotease FTSH 2, chloroplastic"	AT2G30950.1	FtsH extracellular protease family 	LOC_Os06g45820.1	"OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed"	Medtr7g010070.1	"Peptidase S26A, signal peptidase I; AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.6061.1.S1_at	A	A1TS	POPTR_0007s02690	POPTR_0007s02690 (9)	scaffold_7:1569768-1569881(-) (9)	NA	NA	NA	AT4G15248.1	B-box type zinc finger family protein 	LOC_Os08g08120.3	"B-box zinc finger family protein, putative, expressed"	Medtr2g103560.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6063.1.S1_at	A	A1TS	POPTR_0016s06030	POPTR_0016s06030 (11)	scaffold_16:3962579-3962845(+) (11)	NA	Q5I0H4	Transmembrane and coiled-coil domains protein 1	AT5G06660.1	"Protein of unknown function DUF106, transmembrane "	LOC_Os03g51160.2	"fb27, putative, expressed"	Medtr7g099900.1	"Transmembrane and coiled-coil domain-containing protein 1 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6067.1.S1_at	A	A1TS	POPTR_0034s00330	POPTR_0034s00330 (11)	scaffold_34:216029-216172(-) (11)	NA	O23429	Vesicle-associated membrane protein 724	AT4G15780.1	vesicle-associated membrane protein 724 	LOC_Os07g09600.1	"vesicle-associated membrane protein, putative, expressed"	Medtr4g023810.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.6067.1.S1_s_at	A	A1TS	POPTR_0034s00330	POPTR_0034s00330 (11)	scaffold_34:215879-216403(-) (11)	NA	O23429	Vesicle-associated membrane protein 724	AT4G15780.1	vesicle-associated membrane protein 724 	LOC_Os07g09600.1	"vesicle-associated membrane protein, putative, expressed"	Medtr4g023810.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.6068.1.S1_s_at	A	A1TS	POPTR_0022s00280	POPTR_0022s00280 (11)	scaffold_22:41652-41850(-) (11)	NA	Q5M868	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
Ptp.6069.1.S1_a_at	A	A1TS	POPTR_0014s09120	POPTR_0014s09120 (11)	scaffold_14:6758408-6758555(+) (11)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6069.2.S1_a_at	A	A1TS	POPTR_0014s09120	POPTR_0014s09120 (11)	scaffold_14:6758407-6758579(+) (11)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6073.1.S1_at	A	A1TS	POPTR_0004s18090	POPTR_0004s18090 (11)	scaffold_4:18102923-18103696(+) (11)	NA	P35133	Ubiquitin-conjugating enzyme E2 10	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os02g02830.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g098530.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6074.1.S1_at	A	A1TS	POPTR_0005s11940	POPTR_0005s11940 (11)	scaffold_5:8714800-8714996(+) (11)	NA	NA	NA	AT3G51100.1	unknown protein; Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g49980.1	expressed protein	Medtr4g033520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6074.1.S1_s_at	A	A1TS	POPTR_0005s11940	POPTR_0005s11940 (11)	scaffold_5:8715059-8715234(+) (11)	NA	NA	NA	AT3G51100.1	unknown protein; Has 48 Blast hits to 48 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g49980.1	expressed protein	Medtr4g033520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6075.1.S1_at	A	A3TS	POPTR_0017s07890	POPTR_0017s07890 (11)//POPTR_0017s07910 (10)//POPTR_0017s07930 (9)	scaffold_17:6239010-6239441(+) (11)//scaffold_17:6271419-6271849(+) (10)//scaffold_17:6303479-6303909(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6076.1.S1_s_at	A	A1TS	POPTR_0001s23190	POPTR_0001s23190 (11)	scaffold_1:22451919-22452046(-) (11)	NA	Q84WM9	Elongation factor 1-beta 1	AT5G12110.1	"Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6 "	LOC_Os07g46750.1	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.6077.1.S1_s_at	A	A1TS	POPTR_0010s20560	POPTR_0010s20560 (9)	scaffold_10:18094315-18094715(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.608.1.S1_at	A	A1TS	POPTR_0006s08570	POPTR_0006s08570 (9)	scaffold_6:6250090-6250525(+) (9)	NA	Q9S7G7	Myb-related protein 3R-1	AT5G02320.2	myb domain protein 3r-5 	LOC_Os01g62410.1	"MYB family transcription factor, putative, expressed"	Medtr7g068380.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6080.1.S1_at	A	A1TS	POPTR_0001s27630	POPTR_0001s27630 (11)	scaffold_1:26508190-26509348(-) (11)	NA	Q54HF6	Probable U6 snRNA-associated Sm-like protein LSm7	AT2G03870.1	Small nuclear ribonucleoprotein family protein 	LOC_Os08g08040.1	"LSM domain containing protein, expressed"	Medtr7g070870.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6081.1.S1_at	A	A1TS	POPTR_0008s11770	POPTR_0008s11770 (11)	scaffold_8:7532322-7533160(-) (11)	NA	P54243	"Glucose-6-phosphate isomerase, cytosolic"	AT5G42740.1	Sugar isomerase (SIS) family protein 	LOC_Os03g56460.2	"glucose-6-phosphate isomerase, putative, expressed"	Medtr6g009990.1	Phosphoglucose isomerase (PGI) 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006096|glycolysis||GO:0006094|gluconeogenesis	GO:0004347|glucose-6-phosphate isomerase activity	NA
Ptp.6084.2.S1_s_at	A	A1TS	POPTR_0005s25540	POPTR_0005s25540 (10)	scaffold_5:23774284-23774882(+) (10)	NA	P25804	Cysteine proteinase 15A	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6084.3.S1_a_at	A	A1TS	POPTR_0005s25540	POPTR_0005s25540 (11)	scaffold_5:23773535-23773587(+) (11)	NA	P25804	Cysteine proteinase 15A	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6084.3.S1_at	A	A1MS	POPTR_0005s25540	POPTR_0005s25540 (11)	scaffold_5:23773955-23774021(+) (11)	NA	P25804	Cysteine proteinase 15A	AT4G39090.1	Papain family cysteine protease 	LOC_Os02g27030.1	"cysteine proteinase 1 precursor, putative, expressed"	Medtr4g096510.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6085.1.S1_s_at	A	A1TS	POPTR_0005s02060	POPTR_0005s02060 (11)	scaffold_5:1336137-1336500(+) (11)	NA	Q6GHH1	DNA polymerase III polC-type	AT5G26940.4	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os03g18940.1	"exonuclease, putative, expressed"	Medtr7g138210.1	"Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6089.1.A1_s_at	A	A1TS	POPTR_0016s02790	POPTR_0016s02790 (10)	scaffold_16:1385023-1385056(+) (10)	NA	Q9SEI4	26S protease regulatory subunit 6B homolog	AT5G58290.1	regulatory particle triple-A ATPase 3 	LOC_Os02g21970.1	"26S protease regulatory subunit 6B, putative, expressed"	Medtr3g083690.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.609.1.S1_at	A	A1TS	POPTR_0005s08690	POPTR_0005s08690 (10)	scaffold_5:6050372-6050428(-) (10)	NA	Q9D7M8	DNA-directed RNA polymerase II subunit RPB4	AT5G09920.1	"RNA polymerase II, Rpb4, core protein "	LOC_Os02g02510.1	"DNA-directed RNA polymerase II subunit RPB4, putative, expressed"	Medtr8g012340.1	RNA polymerase Rpb4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.609.1.S1_s_at	A	A1TS	POPTR_0005s08690	POPTR_0005s08690 (11)	scaffold_5:6050434-6051682(-) (11)	NA	Q9D7M8	DNA-directed RNA polymerase II subunit RPB4	AT5G09920.1	"RNA polymerase II, Rpb4, core protein "	LOC_Os02g02510.1	"DNA-directed RNA polymerase II subunit RPB4, putative, expressed"	Medtr8g012340.1	RNA polymerase Rpb4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.609.3.S1_at	A	A1MS	POPTR_0007s06660	POPTR_0007s06660 (11)	scaffold_7:5054372-5054586(-) (11)	NA	Q9D7M8	DNA-directed RNA polymerase II subunit RPB4	AT5G09920.1	"RNA polymerase II, Rpb4, core protein "	LOC_Os02g02510.1	"DNA-directed RNA polymerase II subunit RPB4, putative, expressed"	Medtr8g012340.1	RNA polymerase Rpb4 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.6091.1.S1_at	A	A1TS	POPTR_0014s16530	POPTR_0014s16530 (11)	scaffold_14:12596621-12597331(+) (11)	NA	NA	NA	AT2G05310.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13500.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g39830.1	expressed protein	Medtr5g106160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6093.1.S1_at	A	A1TS	POPTR_0013s15110	POPTR_0013s15110 (11)	scaffold_13:15167308-15167375(+) (11)	NA	Q9LVL5	Probable serine/threonine-protein kinase WNK4	AT5G58350.1	with no lysine (K) kinase 4 	LOC_Os12g02250.1	"STE_PAK_Ste20_Slob_Wnk.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g083060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6095.1.S1_at	A	A1TS	POPTR_0006s08850	POPTR_0006s08850 (11)	scaffold_6:6509615-6510262(-) (11)	NA	NA	NA	AT5G02120.1	one helix protein 	LOC_Os05g22730.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6096.1.S1_s_at	A	A1TS	POPTR_0010s08470	POPTR_0010s08470 (10)	scaffold_10:9373357-9373571(+) (10)	NA	Q6NN02	"Uncharacterized protein At4g14450, chloroplastic"	AT4G14450.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23170.1); Has 74 Blast hits to 74 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6097.1.S1_x_at	A	A1TS	POPTR_0015s14380	POPTR_0015s14380 (11)	scaffold_15:14005334-14006258(+) (11)	NA	Q42971	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.6099.1.S1_at	A	A1TS	POPTR_0013s14450	POPTR_0013s14450 (11)	scaffold_13:14634485-14634583(+) (11)	NA	Q9SKT0	"Protein THYLAKOID FORMATION 1, chloroplastic"	AT2G20890.1	photosystem II reaction center PSB29 protein 	LOC_Os07g37250.1	"THYLAKOID FORMATION1, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6099.1.S1_s_at	A	A1TS	POPTR_0013s14450	POPTR_0013s14450 (11)	scaffold_13:14632875-14634423(+) (11)	NA	Q9SKT0	"Protein THYLAKOID FORMATION 1, chloroplastic"	AT2G20890.1	photosystem II reaction center PSB29 protein 	LOC_Os07g37250.1	"THYLAKOID FORMATION1, chloroplast precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.61.1.S1_at	A	A1TS	POPTR_0004s21900	POPTR_0004s21900 (10)	scaffold_4:20869113-20869609(+) (10)	NA	NA	NA	AT2G16050.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os12g40470.1	"DC1 domain-containing protein, putative, expressed"	Medtr7g026080.1	DC1; C1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6100.1.S1_s_at	A	A2TS	POPTR_0006s04020	POPTR_0006s04020 (11)//POPTR_0016s03840 (11)	scaffold_16:2144487-2145821(-) (11)//scaffold_6:2727188-2728665(-) (11)	NA	Q6CFJ0	Mitochondria fission 1 protein	AT3G57090.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g31770.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr5g097040.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6100.3.S1_a_at	A	A2TS	POPTR_0006s04020	POPTR_0006s04020 (9)//POPTR_0016s03840 (9)	scaffold_16:2144664-2144698(-) (9)//scaffold_6:2727375-2727409(-) (9)	NA	Q6CFJ0	Mitochondria fission 1 protein	AT3G57090.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g31770.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr5g097040.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6102.1.S1_s_at	A	A1TS	POPTR_0004s01470	POPTR_0004s01470 (11)	scaffold_4:837894-838222(-) (11)	NA	P29790	"ATP synthase gamma chain, chloroplastic"	AT4G04640.1	"ATPase, F1 complex, gamma subunit protein "	LOC_Os07g32880.1	"ATP synthase gamma chain, putative, expressed"	Medtr3g068860.1	"H+-transporting two-sector ATPase, gamma subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)"""
Ptp.6103.1.S1_s_at	A	A1TS	POPTR_0007s12650	POPTR_0007s12650 (9)	scaffold_7:12908666-12909184(+) (9)	NA	Q9SCQ7	Acidic leucine-rich nuclear phosphoprotein 32-related protein	AT3G50690.1	Leucine-rich repeat (LRR) family protein 	LOC_Os07g41694.1	"acidic leucine-rich nuclear phosphoprotein 32-related protein 1, putative, expressed"	Medtr8g093560.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
Ptp.6105.1.S1_at	A	A1TS	POPTR_0006s28260	POPTR_0006s28260 (11)	scaffold_6:26008151-26009269(+) (11)	NA	NA	NA	AT2G24860.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os09g25590.1	"tsi1-interacting protein TSIP1, putative, expressed"	Medtr3g138530.1	"Tsi1-interacting protein TSIP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6108.1.S1_at	A	A1TS	POPTR_0003s12700	POPTR_0003s12700 (11)	scaffold_3:13205792-13206750(-) (11)	NA	O22493	"Glutamate--cysteine ligase, chloroplastic"	AT4G23100.3	glutamate-cysteine ligase 	LOC_Os05g03820.3	"glutamate--cysteine ligase, chloroplast precursor, putative, expressed"	Medtr4g149470.1	"Glutamate--cysteine ligase, plant "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process	GO:0004357|glutamate-cysteine ligase activity	NA
Ptp.6109.1.S1_at	A	A1TS	POPTR_0007s06610	POPTR_0007s06610 (10)	scaffold_7:5026395-5028625(-) (10)	NA	NA	NA	AT5G09960.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g07380.1	expressed protein	Medtr3g144730.1	"4D11_4, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6110.1.S1_at	A	A1TS	POPTR_0010s23540	POPTR_0010s23540 (11)	scaffold_10:20085824-20086358(+) (11)	NA	P51281	Uncharacterized protein ycf45	AT3G10420.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g08970.1	"uncharacterized protein ycf45, putative, expressed"	AC233660_32.1	"AAA ATPase, central region AC233660.2 122587-125547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6111.1.S1_at	A	A1TS	POPTR_0014s03500	POPTR_0014s03500 (11)	scaffold_14:2812823-2813377(+) (11)	NA	Q9SZA7	Probable disease resistance protein At4g33300	AT4G33300.2	ADR1-like 1 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr1g025080.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.6118.1.S1_a_at	A	A1TS	POPTR_0004s24090	POPTR_0004s24090 (11)	scaffold_4:22832288-22834263(-) (11)	NA	P57108	Glutathione S-transferase zeta class	AT2G02390.1	glutathione S-transferase zeta 1 	LOC_Os02g35590.2	"glutathione S-transferase, putative, expressed"	Medtr5g098100.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6119.1.S1_s_at	A	A1TS	POPTR_0008s05520	POPTR_0008s05520 (11)	scaffold_8:3199751-3199989(+) (11)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.2	OBF-binding protein 3 	LOC_Os03g60630.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.612.1.S1_s_at	A	A1TS	POPTR_0014s09770	POPTR_0014s09770 (11)	scaffold_14:7284318-7284764(+) (11)	NA	Q40191	Ras-related protein Rab11A	AT1G01200.1	RAB GTPase homolog A3 	LOC_Os09g35860.1	"ras-related protein, putative, expressed"	Medtr8g029570.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6120.1.S1_at	A	A1TS	POPTR_0010s16320	POPTR_0010s16320 (10)	scaffold_10:15288866-15290531(-) (10)	NA	Q9LRP7	Autophagy-related protein 8i	AT3G15580.1	Ubiquitin-like superfamily protein 	LOC_Os11g01010.1	"autophagy-related protein 8D, putative, expressed"	Medtr8g134240.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6122.1.A1_at	A	A2TS	POPTR_0011s12090	POPTR_0011s12100 (11)//POPTR_0011s12090 (11)	scaffold_11:14868535-14869108(-) (11)//scaffold_11:14886034-14886614(-) (11)	NA	Q9FJD5	Laccase-17	AT5G60020.1	laccase 17 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.6124.1.S1_at	A	A1TS	POPTR_0007s06210	POPTR_0007s06210 (10)	scaffold_7:4379126-4380099(+) (10)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G58950.1	Protein kinase superfamily protein 	LOC_Os01g10450.2	"protein kinase domain containing protein, expressed"	Medtr2g017390.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6125.1.S1_at	A	A1TS	POPTR_0011s15670	POPTR_0011s15670 (11)	scaffold_11:17760511-17760634(+) (11)	NA	NA	NA	AT1G79160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6128.1.S1_s_at	A	A1TS	POPTR_0001s21120	POPTR_0001s21120 (11)	scaffold_1:19484040-19484336(+) (11)	NA	Q9M7M1	Ethylene receptor	AT1G66340.1	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.6130.1.S1_at	A	A1TS	POPTR_0008s08740	POPTR_0008s08740 (11)	scaffold_8:5399836-5400323(+) (11)	NA	Q93ZL5	Dof zinc finger protein DOF5.2	AT5G39660.2	cycling DOF factor 2 	LOC_Os01g15900.1	expressed protein	Medtr4g111860.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.6131.1.S1_s_at	A	A1TS	POPTR_0001s07860	POPTR_0001s07860 (11)	scaffold_1:5952797-5953122(+) (11)	NA	Q42798	Cytochrome P450 93A1	AT4G12300.1	"cytochrome P450, family 706, subfamily A, polypeptide 4 "	LOC_Os01g50490.1	"cytochrome P450, putative, expressed"	Medtr3g169570.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6132.1.A1_at	A	A1TS	POPTR_0008s18080	POPTR_0008s18080 (11)	scaffold_8:12118429-12118603(+) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT3G27320.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g67600.1	"CXE carboxylesterase, putative, expressed"	Medtr6g071120.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.6134.1.S1_at	A	A1TS	POPTR_0004s16800	POPTR_0004s16800 (11)	scaffold_4:17142886-17143851(-) (11)	NA	NA	NA	AT2G21385.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). "	LOC_Os09g36130.1	expressed protein	Medtr4g096640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6136.1.S1_at	A	A1TS	POPTR_0012s10220	POPTR_0012s10220 (11)	scaffold_12:11038872-11039379(+) (11)	NA	Q9FMV1	"Uncharacterized protein At5g63510, mitochondrial"	AT5G63510.1	gamma carbonic anhydrase like 1 	LOC_Os02g30460.1	"uncharacterized protein MJ0304, putative, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6136.1.S1_s_at	A	A1TS	POPTR_0012s10220	POPTR_0012s10220 (11)	scaffold_12:11038915-11039389(+) (11)	NA	Q9FMV1	"Uncharacterized protein At5g63510, mitochondrial"	AT5G63510.1	gamma carbonic anhydrase like 1 	LOC_Os02g30460.1	"uncharacterized protein MJ0304, putative, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6137.1.S1_s_at	A	A1TS	POPTR_0014s02890	POPTR_0014s02890 (11)	scaffold_14:2379228-2380894(+) (11)	NA	Q9NBK5	Serine/threonine-protein kinase tricorner	AT5G09890.1	Protein kinase family protein 	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g024310.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.6138.1.S1_at	A	A1MS	POPTR_0001s41030	POPTR_0001s41030 (9)	scaffold_1:40669238-40669717(-) (9)	NA	Q9LJR3	Protein SPA1-RELATED 3	AT3G15354.1	SPA1-related 3 	LOC_Os01g52640.3	"suppressor of phythchrome A, putative, expressed"	Medtr2g100380.1	Protein kinase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.614.1.A1_at	A	A1TS	POPTR_0078s00220	POPTR_0078s00220 (11)	scaffold_78:34039-34571(-) (11)	NA	Q38867	Peptidyl-prolyl cis-trans isomerase CYP19-3	AT3G56070.2	rotamase cyclophilin 2 	LOC_Os09g39780.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.6141.1.S1_at	A	A1TS	POPTR_0015s11570	POPTR_0015s11570 (10)	scaffold_15:12141739-12142392(-) (10)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os02g52860.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr7g096810.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6143.1.S1_at	A	A1TS	POPTR_0006s02610	POPTR_0006s02610 (10)	scaffold_6:1674682-1675263(-) (10)	NA	NA	NA	AT2G41120.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF309 (InterPro:IPR005500); Has 349 Blast hits to 349 proteins in 112 species: Archae - 2; Bacteria - 189; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). 	LOC_Os11g03580.1	expressed protein	Medtr7g105030.1	Protein of unknown function DUF309 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6147.1.S1_s_at	A	A1TS	POPTR_0019s08300	POPTR_0019s08300 (11)	scaffold_19:9785484-9787572(-) (11)	NA	P53665	"Acyl carrier protein, mitochondrial"	AT1G65290.1	mitochondrial acyl carrier protein 2 	LOC_Os03g22950.1	"acyl carrier protein, putative, expressed"	Medtr7g090000.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
Ptp.615.1.S1_s_at	A	A1TS	POPTR_0010s20620	POPTR_0010s20620 (11)	scaffold_10:18130054-18130434(-) (11)	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os03g16150.3	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.6150.1.S1_s_at	A	A1TS	POPTR_0008s17410	POPTR_0008s17410 (11)	scaffold_8:11683043-11683344(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6151.1.A1_a_at	A	A1TS	POPTR_0012s05430	POPTR_0012s05430 (11)	scaffold_12:5063031-5063757(-) (11)	NA	NA	NA	AT5G23040.1	Protein of unknown function (DUF3353) 	LOC_Os09g21250.1	expressed protein	Medtr8g115580.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6153.1.S1_at	A	A1TS	POPTR_0003s18630	POPTR_0003s18630 (11)	scaffold_3:17633613-17634045(+) (11)	NA	NA	NA	AT2G24530.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g56300.1	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6154.1.S1_s_at	A	A1TS	POPTR_0015s04430	POPTR_0015s04430 (11)	scaffold_15:4580690-4580876(+) (11)	NA	NA	NA	AT1G18180.1	Protein of unknown function (DUF1295) 	LOC_Os03g50070.1	"DUF1295 domain containing protein, putative, expressed"	Medtr4g155170.1	Protein of unknown function DUF1295 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6155.1.A1_a_at	A	A1TS	POPTR_0001s07870	POPTR_0001s07870 (11)	scaffold_1:5958659-5958983(-) (11)	NA	Q8H1H9	Primary amine oxidase	AT4G12290.1	Copper amine oxidase family protein 	LOC_Os04g20164.1	"amine oxidase precursor, putative, expressed"	Medtr3g109760.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
Ptp.6156.1.S1_at	A	A1TS	POPTR_0019s15350	POPTR_0019s15350 (11)	scaffold_19:15874772-15875795(-) (11)	NA	B4PS83	Cohesin loading complex subunit SCC4 homolog	AT5G51340.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g28010.1	expressed protein	Medtr5g083820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6159.2.S1_at	A	A1TS	POPTR_0001s12140	POPTR_0001s12140 (9)	scaffold_1:9401462-9401494(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.616.1.A1_at	A	A1TS	POPTR_0012s04660	POPTR_0012s04660 (9)	scaffold_12:4011016-4011294(+) (9)	NA	P90587	66 kDa stress protein	AT3G18060.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g03510.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g155430.1	"66 kDa stress protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6161.1.S1_at	A	A1TS	POPTR_0014s12430	POPTR_0014s12430 (10)	scaffold_14:9171881-9172385(-) (10)	NA	NA	NA	AT3G62810.1	complex 1 family protein / LVR family protein 	LOC_Os05g30030.1	expressed protein	Medtr1g108410.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6163.1.S1_s_at	A	A1TS	POPTR_0006s08420	POPTR_0006s08420 (11)	scaffold_6:6130344-6131029(-) (11)	NA	Q9M354	Probable ADP-ribosylation factor GTPase-activating protein AGD6	AT3G53710.2	ARF-GAP domain 6 	LOC_Os03g17020.2	"GTPase-activating protein, putative, expressed"	Medtr7g118270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.6165.1.S1_at	A	A1TS	POPTR_0011s05780	POPTR_0011s05780 (11)	scaffold_11:5796725-5797176(-) (11)	NA	Q9SGP6	Glutaredoxin-C9	AT1G28480.1	Thioredoxin superfamily protein 	LOC_Os01g47760.1	"OsGrx_I1 - glutaredoxin subgroup III, expressed"	Medtr4g108920.1	"Monothiol glutaredoxin-S5, related "	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.617.1.S1_at	A	A1TS	POPTR_0004s18840	POPTR_0004s18840 (11)	scaffold_4:18577130-18577257(+) (11)	NA	Q9SVE5	Expansin-like A2	AT4G38400.1	expansin-like A2 	LOC_Os03g04020.1	"expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6170.1.S1_at	A	A1TS	POPTR_0001s22180	POPTR_0001s22180 (11)	scaffold_1:20818822-20820583(+) (11)	NA	Q9XFB0	Putative axial regulator YABBY 2	AT1G08465.1	Plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr2g104680.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6172.1.S1_s_at	A	A1TS	POPTR_0012s07070	POPTR_0012s07070 (11)	scaffold_12:7752382-7752865(+) (11)	POPTR_0003s16640 (8)	Q9QXN3	Activating signal cointegrator 1	AT3G47610.1	transcription regulators;zinc ion binding 	LOC_Os09g24660.1	"AGAP000554-PA, putative, expressed"	Medtr8g112270.1	"Zinc finger, C2HC5-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0030528|transcription regulator activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.6178.1.S1_s_at	A	A1TS	POPTR_0002s00360	POPTR_0002s00360 (11)	scaffold_2:95895-96502(-) (11)	NA	P0AF48	UPF0047 protein yjbQ	AT1G21065.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). 	LOC_Os02g09460.1	"GA16396-PA, putative, expressed"	Medtr4g114450.1	Protein of unknown function UPF0047 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6178.3.S1_at	A	A1MS	POPTR_0002s00360	POPTR_0002s00360 (11)	scaffold_2:95687-95872(-) (11)	NA	P0AF48	UPF0047 protein yjbQ	AT1G21065.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). 	LOC_Os02g09460.1	"GA16396-PA, putative, expressed"	Medtr4g114450.1	Protein of unknown function UPF0047 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6179.1.S1_at	A	A1TS	POPTR_0008s20050	POPTR_0008s20050 (10)	scaffold_8:13867058-13867493(+) (10)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.618.1.A1_at	A	A1TS	POPTR_0018s00720	POPTR_0018s00720 (11)	scaffold_18:631318-633247(-) (11)	NA	P33399	La protein homolog	AT4G32720.2	La protein 1 	LOC_Os02g39700.1	"RNA binding protein, putative, expressed"	Medtr2g024800.1	RNA-binding region RNP-1 (RNA recognition motif); Winged helix repressor DNA-binding 	NA	GO:0003676|nucleic acid binding	NA
Ptp.6180.1.S1_s_at	A	A1TS	POPTR_0001s10880	POPTR_0001s10880 (11)	scaffold_1:8434264-8434924(-) (11)	NA	P37707	B2 protein	AT5G42050.1	DCD (Development and Cell Death) domain protein 	LOC_Os01g36950.2	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6183.1.S1_at	A	A1MS	POPTR_0016s06500	POPTR_0016s06500 (11)	scaffold_16:4365702-4365985(+) (11)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT5G06570.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g06880.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.6185.1.S1_at	A	A1TS	POPTR_0005s11710	POPTR_0005s11710 (11)	scaffold_5:8534969-8535249(+) (11)	NA	NA	NA	AT2G17972.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 34 Blast hits to 34 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os06g50130.1	expressed protein	Medtr8g090030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6186.1.S1_at	A	A1TS	POPTR_0001s30900	POPTR_0001s30900 (11)	scaffold_1:29317251-29317300(+) (11)	NA	Q2N5X0	Kynurenine formamidase	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6187.1.S1_x_at	A	A1TS	POPTR_0004s01940	POPTR_0004s01940 (11)	scaffold_4:1205999-1206386(-) (11)	NA	Q9SSK7	MLP-like protein 34	AT1G70880.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	NA	NA	Medtr8g012990.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.6188.1.S1_at	A	A1TA	POPTR_0004s01510	POPTR_0004s01510 (9)	scaffold_4:867238-867284(-) (9)	NA	Q9SB81	Peroxidase 42	AT4G21960.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr8g146760.2	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.6188.1.S1_s_at	A	A1TS	POPTR_0006s23310	POPTR_0006s23310 (11)	scaffold_6:22072371-22072738(+) (10)	POPTR_0018s04900 (6)//POPTR_0563s00200 (6)	Q41365	26S protease regulatory subunit 7	AT1G53750.1	regulatory particle triple-A 1A 	LOC_Os06g09290.1	"26S protease regulatory subunit 7, putative, expressed"	Medtr1g121600.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.6189.2.S1_a_at	A	A2TS	POPTR_0015s08510	POPTR_0015s08510 (11)//POPTR_0559s00200 (11)	scaffold_15:9773317-9773363(-) (11)//scaffold_559:2163-2209(-) (11)	NA	NA	NA	AT5G62865.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). 	LOC_Os02g50940.1	"NHL repeat-containing protein, putative, expressed"	Medtr8g125480.1	"IS10 transposase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.619.1.S1_s_at	A	A1TS	POPTR_0005s18120	POPTR_0005s18120 (11)	scaffold_5:16194021-16195054(-) (11)	NA	P41210	Caltractin	AT3G50360.1	centrin2 	LOC_Os07g42660.1	"OsCML13 - Calmodulin-related calcium sensor protein, expressed"	Medtr7g080540.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6191.1.S1_at	A	A1TS	POPTR_0016s04290	POPTR_0016s04290 (11)	scaffold_16:2483415-2483453(+) (11)	NA	Q8W4L0	Probable calcium-binding protein CML49	AT3G10300.4	Calcium-binding EF-hand family protein 	LOC_Os11g04480.1	"peflin, putative, expressed"	Medtr2g107710.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6191.1.S1_s_at	A	A1TS	POPTR_0016s04290	POPTR_0016s04290 (11)	scaffold_16:2482618-2483401(+) (11)	NA	Q8W4L0	Probable calcium-binding protein CML49	AT3G10300.4	Calcium-binding EF-hand family protein 	LOC_Os11g04480.1	"peflin, putative, expressed"	Medtr2g107710.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6192.1.S1_s_at	A	A1TS	POPTR_0019s01520	POPTR_0019s01520 (11)	scaffold_19:1339432-1339926(+) (11)	NA	Q70PR7	Vinorine synthase	AT3G26040.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g43040.2	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.6193.1.S1_at	A	A1TS	POPTR_0013s07910	POPTR_0013s07910 (11)	scaffold_13:6856708-6860725(-) (11)	NA	NA	NA	AT3G03070.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os08g06430.1	"mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed"	Medtr4g107210.1	"mitochondrial NADH-ubiquinone oxidoreductase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6194.1.S1_s_at	A	A1TS	POPTR_0001s09660	POPTR_0001s09660 (11)	scaffold_1:7361969-7362821(-) (11)	NA	O81742	Beta-adaptin-like protein C	AT4G23460.1	Adaptin family protein 	LOC_Os03g23950.1	"adapitin protein, putative, expressed"	Medtr4g103980.1	"Adaptin, N-terminal; Alpha/gamma adaptin, C-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.6195.1.S1_at	A	A1TS	POPTR_0011s11490	POPTR_0011s11490 (11)	scaffold_11:14237339-14237946(+) (11)	NA	Q9C8M2	"Peptide methionine sulfoxide reductase B1, chloroplastic"	AT1G53670.1	methionine sulfoxide reductase B 1 	LOC_Os06g27760.2	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr4g121860.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
Ptp.6196.1.S1_at	A	A1TS	POPTR_0008s17420	POPTR_0008s17420 (9)	scaffold_8:11691867-11692209(+) (9)	NA	Q9LIR6	"Beta-amylase 1, chloroplastic"	AT3G23920.1	beta-amylase 1 	LOC_Os03g04770.1	"beta-amylase, putative, expressed"	Medtr5g013790.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.6197.1.S1_s_at	A	A1TS	POPTR_0009s10420	POPTR_0009s10420 (11)	scaffold_9:8944675-8945475(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g129860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.62.1.A1_s_at	A	A1TS	POPTR_0003s14600	POPTR_0003s14600 (11)	scaffold_3:14634507-14634929(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT4G10730.1	Protein kinase superfamily protein 	LOC_Os03g02320.1	"STE_PAK_Ste20_STLK.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g006330.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.620.1.S1_at	A	A1TS	POPTR_0001s06870	POPTR_0001s06870 (11)	scaffold_1:5246074-5246906(-) (11)	NA	B9GLX8	Retinoblastoma-related protein	AT3G12280.2	retinoblastoma-related 1 	LOC_Os08g42600.2	"retinoblastoma-related protein-like, putative, expressed"	Medtr8g043930.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6200.1.S1_at	A	A1TS	POPTR_0011s03020	POPTR_0011s03020 (11)	scaffold_11:2997117-2997706(+) (11)	NA	O81481	Eukaryotic translation initiation factor 4E-1	AT4G18040.1	eukaryotic translation initiation factor 4E 	LOC_Os01g73880.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr2g021870.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.6201.1.S1_s_at	A	A1TS	POPTR_0018s05190	POPTR_0018s05190 (11)	scaffold_18:4686566-4686979(+) (11)	NA	O04089	"Zinc transporter 4, chloroplastic"	AT1G10970.1	zinc transporter 4 precursor 	LOC_Os06g37010.2	"metal cation transporter, putative, expressed"	Medtr3g139990.1	"Cytochrome c oxidase, subunit I; Zinc/iron permease "	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
Ptp.6203.1.S1_s_at	A	A1TS	POPTR_0001s19070	POPTR_0001s19070 (11)	scaffold_1:16366536-16366803(+) (11)	NA	Q869R9	Myb-like protein J	AT3G16350.1	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.6203.2.S1_at	A	A1MS	POPTR_0001s19070	POPTR_0001s19070 (11)	scaffold_1:16366829-16366956(+) (11)	NA	Q869R9	Myb-like protein J	AT3G16350.1	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.6204.1.S1_a_at	A	A2TS	POPTR_0006s18970	POPTR_0018s10650 (11)//POPTR_0006s18970 (11)	scaffold_18:11544987-11545172(+) (11)//scaffold_6:17821046-17821231(+) (11)	NA	Q38885	"Preprotein translocase subunit secY, chloroplastic"	AT2G18710.1	SECY homolog 1 	LOC_Os08g15460.1	"preprotein translocase subunit secY, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
Ptp.6204.2.S1_at	A	A1TS	POPTR_0018s10650	POPTR_0018s10650 (9)	scaffold_18:11545161-11545464(+) (9)	NA	Q38885	"Preprotein translocase subunit secY, chloroplastic"	AT2G18710.1	SECY homolog 1 	LOC_Os08g15460.1	"preprotein translocase subunit secY, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
Ptp.6208.1.S1_s_at	A	A1TS	POPTR_0022s00350	POPTR_0022s00350 (11)	scaffold_22:81505-81918(-) (11)	NA	O04486	Ras-related protein RABA2a	AT1G09630.1	RAB GTPase 11C 	LOC_Os05g01480.1	"ras-related protein, putative, expressed"	Medtr2g005340.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6209.1.A1_at	A	A1TS	POPTR_0006s29550	POPTR_0006s29550 (9)	scaffold_6:26887246-26887651(+) (9)	NA	Q9ZQ34	Uncharacterized protein At2g24330	AT4G31080.1	Protein of unknown function (DUF2296) 	LOC_Os02g41990.2	expressed protein	Medtr3g133570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6210.1.S1_at	A	A1TS	POPTR_0001s03020	POPTR_0001s03020 (11)	scaffold_1:2387265-2387481(+) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os09g24230.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6210.1.S1_s_at	A	A1TS	POPTR_0001s03020	POPTR_0001s03020 (11)	scaffold_1:2386903-2387536(+) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os09g24230.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6212.1.S1_s_at	A	A1TS	POPTR_0005s20090	POPTR_0005s20090 (11)	scaffold_5:19100088-19100730(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6213.1.S1_at	A	A1TS	POPTR_0008s00350	POPTR_0008s00350 (11)	scaffold_8:116230-116503(+) (11)	NA	P34899	"Serine hydroxymethyltransferase, mitochondrial"	AT4G37930.1	serine transhydroxymethyltransferase 1 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.6213.1.S1_x_at	A	A1TS	POPTR_0008s00350	POPTR_0008s00350 (11)	scaffold_8:116214-116627(+) (11)	NA	P34899	"Serine hydroxymethyltransferase, mitochondrial"	AT4G37930.1	serine transhydroxymethyltransferase 1 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.6214.1.S1_s_at	A	A1TS	POPTR_0010s06490	POPTR_0010s06490 (11)	scaffold_10:7837720-7838152(-) (11)	NA	NA	NA	AT1G67660.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os04g40900.1	"exonuclease, putative"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6215.2.S1_s_at	A	A2TS	POPTR_0008s09870	POPTR_0010s16330 (11)//POPTR_0008s09870 (11)	scaffold_10:15295025-15295137(+) (11)//scaffold_8:6129873-6129985(-) (11)	NA	A9PEK8	S-adenosylmethionine synthase 3	AT3G17390.1	S-adenosylmethionine synthetase family protein 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.6219.1.S1_at	A	A1TS	POPTR_0001s25670	POPTR_0001s25670 (11)	scaffold_1:24726784-24727254(-) (11)	NA	NA	NA	AT3G47070.1	"LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr5g078450.1	"thylakoid soluble phosphoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6220.1.A1_a_at	A	A1TS	POPTR_0002s09350	POPTR_0002s09350 (10)	scaffold_2:6660207-6660268(-) (10)	NA	NA	NA	AT1G22160.1	Protein of unknown function (DUF581) 	LOC_Os08g31510.1	"DUF581 domain containing protein, expressed"	CU651566_1.1	Protein of unknown function DUF581 CU651566.9 6700-5475 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6220.1.A1_at	A	A1TS	POPTR_0002s09350	POPTR_0002s09350 (11)	scaffold_2:6660273-6660475(-) (11)	NA	NA	NA	AT1G22160.1	Protein of unknown function (DUF581) 	LOC_Os08g31510.1	"DUF581 domain containing protein, expressed"	CU651566_1.1	Protein of unknown function DUF581 CU651566.9 6700-5475 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6221.1.A1_a_at	A	A1TS	POPTR_0006s22950	POPTR_0006s22950 (11)	scaffold_6:21803495-21804791(-) (11)	NA	NA	NA	AT5G03880.1	Thioredoxin family protein 	LOC_Os08g44400.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr3g013180.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.6221.2.A1_at	A	A1TS	POPTR_0006s22950	POPTR_0006s22950 (9)	scaffold_6:21802842-21803045(-) (9)	NA	NA	NA	AT5G03880.1	Thioredoxin family protein 	LOC_Os08g44400.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr3g013180.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.6223.1.S1_s_at	A	A1TS	POPTR_0005s22880	POPTR_0005s22880 (11)	scaffold_5:21769340-21769796(+) (11)	NA	Q9SKX5	Probable polyamine oxidase 2	AT2G43020.1	polyamine oxidase 2 	LOC_Os04g53190.2	"CPuORF12 - conserved peptide uORF-containing transcript, expressed"	Medtr5g097430.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.6226.1.S1_at	A	A1TS	POPTR_0001s45520	POPTR_0001s45520 (9)	scaffold_1:46031438-46032700(+) (9)	NA	Q9LXS1	Metal tolerance protein A2	AT3G58810.1	metal tolerance protein A2 	LOC_Os05g03780.1	"cation efflux family protein, putative, expressed"	Medtr2g041270.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
Ptp.623.1.A1_a_at	A	A1MS	POPTR_0001s28320	POPTR_0001s28320 (10)	scaffold_1:27117960-27118589(-) (10)	NA	Q9LFC5	Pentatricopeptide repeat-containing protein At5g01110	AT5G01110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06910.1	PPR repeat containing protein	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6230.1.S1_at	A	A1TS	POPTR_0002s01570	POPTR_0002s01570 (11)	scaffold_2:843951-844599(-) (11)	NA	P17859	Alpha-amylase	AT1G76130.1	alpha-amylase-like 2 	LOC_Os04g33040.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
Ptp.6232.1.S1_at	A	A1TS	POPTR_0011s14840	POPTR_0011s14840 (9)	scaffold_11:17096870-17097995(+) (9)	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.6233.1.S1_at	A	A1TS	POPTR_0006s24570	POPTR_0006s24570 (11)	scaffold_6:23162011-23162232(+) (11)	NA	O49954	"Glycine dehydrogenase [decarboxylating], mitochondrial"	AT4G33010.1	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6234.1.S1_at	A	A1TS	POPTR_0009s07700	POPTR_0009s07700 (9)	scaffold_9:7131562-7134047(+) (9)	NA	NA	NA	AT5G58600.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18110.1	"proteins of unknown function domain containing protein, putative, expressed"	Medtr5g079650.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6236.1.S1_at	A	A1TS	POPTR_0006s16660	POPTR_0006s16660 (11)	scaffold_6:14552920-14555228(+) (11)	NA	Q9N5K2	"DNA-directed RNA polymerases I, II, and III subunit RPABC1"	AT3G22320.1	Eukaryotic rpb5 RNA polymerase subunit family protein 	LOC_Os01g59140.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed"	Medtr5g005650.1	"RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
Ptp.6241.1.S1_at	A	A1MS	POPTR_0008s15170	POPTR_0008s15170 (10)	scaffold_8:10157414-10157749(+) (10)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6246.1.S1_s_at	A	A1TS	POPTR_0014s12250	POPTR_0014s12250 (11)	scaffold_14:9045813-9046091(-) (11)	NA	P32292	Indole-3-acetic acid-induced protein ARG2	AT4G02380.1	senescence-associated gene 21 	NA	NA	NA	NA	GO:0006950|response to stress	NA	NA
Ptp.6247.1.S1_s_at	A	A1TS	POPTR_0006s09650	POPTR_0006s09650 (11)	scaffold_6:7086943-7087293(-) (11)	NA	Q9Y2M2	Uncharacterized protein C3orf32	AT2G38000.1	chaperone protein dnaJ-related 	LOC_Os05g25210.1	expressed protein	Medtr2g085150.1	"Uncharacterized protein C3orf32, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6247.2.S1_a_at	A	A1TS	POPTR_0006s09650	POPTR_0006s09650 (11)	scaffold_6:7087235-7087444(-) (11)	NA	Q9Y2M2	Uncharacterized protein C3orf32	AT2G38000.1	chaperone protein dnaJ-related 	LOC_Os05g25210.1	expressed protein	Medtr2g085150.1	"Uncharacterized protein C3orf32, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.625.3.S1_at	A	A1TS	POPTR_0001s30030	POPTR_0001s30030 (11)	scaffold_1:28608892-28608992(-) (11)	NA	Q5ZKQ8	ADP-ribosylation factor-like protein 8A	AT3G49870.1	ADP-ribosylation factor-like A1C 	LOC_Os03g10370.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g015500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6252.1.S1_a_at	A	A1TS	POPTR_0005s26030	POPTR_0005s26030 (11)	scaffold_5:24170358-24171095(-) (11)	NA	Q93X17	Snakin-2	AT1G75750.2	GAST1 protein homolog 1 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr3g156410.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6252.2.S1_at	A	A1MS	POPTR_0005s26030	POPTR_0005s26030 (11)	scaffold_5:24170852-24171016(-) (11)	NA	Q93X17	Snakin-2	AT1G75750.2	GAST1 protein homolog 1 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr3g156410.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6254.1.S1_at	A	A1TS	POPTR_0003s03400	POPTR_0003s03400 (9)	scaffold_3:3783878-3784100(-) (9)	NA	NA	NA	AT4G17670.1	Protein of unknown function (DUF581) 	LOC_Os04g49660.1	"DUF581 domain containing protein, expressed"	Medtr5g013920.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6254.2.S1_s_at	A	A1TS	POPTR_0003s03400	POPTR_0003s03400 (11)	scaffold_3:3784266-3785023(-) (11)	NA	NA	NA	AT4G17670.1	Protein of unknown function (DUF581) 	LOC_Os04g49660.1	"DUF581 domain containing protein, expressed"	Medtr5g013920.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6255.1.S1_at	A	A1TS	POPTR_0014s15330	POPTR_0014s15330 (11)	scaffold_14:11415479-11416043(-) (11)	NA	Q7DFU6	Putative uncharacterized protein yghX	AT2G32520.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g34700.1	"dienelactone hydrolase family protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
Ptp.6257.1.S1_at	A	A1TS	POPTR_0001s38480	POPTR_0001s38480 (11)	scaffold_1:37600742-37600931(-) (11)	NA	Q8LPR5	Transcription factor TCP4	AT3G15030.3	TCP family transcription factor 4 	LOC_Os01g11550.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6258.1.S1_at	A	A1TS	POPTR_0008s11560	POPTR_0008s11560 (9)	scaffold_8:7359623-7360205(-) (9)	NA	Q9S713	"Serine/threonine-protein kinase STN7, chloroplastic"	AT1G68830.1	STT7 homolog STN7 	LOC_Os05g47560.1	"serine/threonine-protein kinase SNT7, chloroplast precursor, putative, expressed"	Medtr5g069380.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6259.1.A1_at	A	A1TS	POPTR_0004s03240	POPTR_0004s03240 (10)	scaffold_4:2188102-2188293(+) (10)	NA	NA	NA	AT4G05120.1	Major facilitator superfamily protein 	LOC_Os07g37100.2	"nucleoside transporter, putative, expressed"	Medtr2g103000.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
Ptp.6259.1.A1_s_at	A	A1TS	POPTR_0004s03240	POPTR_0004s03240 (11)	scaffold_4:2188496-2188746(+) (11)	NA	NA	NA	AT4G05120.1	Major facilitator superfamily protein 	LOC_Os07g37100.2	"nucleoside transporter, putative, expressed"	Medtr2g103000.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
Ptp.626.1.S1_a_at	A	A1TS	POPTR_0002s20400	POPTR_0002s20400 (11)	scaffold_2:16460325-16462046(-) (11)	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os03g22180.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6260.1.S1_at	A	A1TS	POPTR_0009s04650	POPTR_0009s04650 (9)	scaffold_9:4942728-4944369(-) (9)	NA	P32811	"Alpha-glucan phosphorylase, H isozyme"	AT3G46970.1	alpha-glucan phosphorylase 2 	LOC_Os01g63270.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr2g017970.1	"Glycosyl transferase, family 35; Amino acid-binding ACT "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
Ptp.6261.2.S1_a_at	A	A1TS	POPTR_0009s01810	POPTR_0009s01810 (11)	scaffold_9:2312443-2313600(-) (11)	NA	Q8LAD0	Pyridoxal biosynthesis protein PDX2	AT5G60540.1	pyridoxine biosynthesis 2 	LOC_Os02g03740.1	"pyridoxal biosynthesis protein PDX2, putative, expressed"	Medtr4g013010.1	SNO glutamine amidotransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6262.1.S1_at	A	A1TS	POPTR_0001s36050	POPTR_0001s36050 (11)	scaffold_1:34525332-34527352(+) (11)	NA	Q8LB02	"Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial"	AT5G40650.1	succinate dehydrogenase 2-2 	LOC_Os08g02640.5	"succinate dehydrogenase iron-sulfur subunit 2,mitochondrial precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6268.1.A1_s_at	A	A1TS	POPTR_0007s13820	POPTR_0007s13820 (11)	scaffold_7:13837795-13846131(-) (11)	NA	Q9NQE7	Thymus-specific serine protease	AT4G36195.3	Serine carboxypeptidase S28 family protein 	LOC_Os10g36760.1	"OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr8g090320.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
Ptp.6269.1.S1_s_at	A	A1TS	POPTR_0005s12490	POPTR_0005s12490 (11)	scaffold_5:9252025-9252506(-) (11)	NA	Q55CU8	Random slug protein 5	AT1G75170.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g51430.2	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr8g093390.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.627.2.S1_at	A	A1MS	POPTR_0010s20920	POPTR_0010s20920 (11)	scaffold_10:18340713-18340834(-) (11)	NA	Q02790	Peptidyl-prolyl cis-trans isomerase FKBP4	AT3G55520.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os05g38370.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g087660.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.627.2.S1_s_at	A	A1TS	POPTR_0010s20920	POPTR_0010s20920 (11)	scaffold_10:18341253-18341681(-) (11)	NA	Q02790	Peptidyl-prolyl cis-trans isomerase FKBP4	AT3G55520.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os05g38370.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g087660.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.6273.1.S1_at	A	A1TS	POPTR_0001s04620	POPTR_0001s04620 (11)	scaffold_1:3590512-3591602(-) (11)	NA	Q9C895	E3 ubiquitin-protein ligase BRE1-like 2	AT1G55250.1	histone mono-ubiquitination 2 	LOC_Os10g41590.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC233662_35.1	"E3 ubiquitin-protein ligase BRE1-like 2, related AC233662.1 173535-167958 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6274.1.S1_s_at	A	A1TS	POPTR_0001s09270	POPTR_0001s09270 (11)	scaffold_1:7089470-7089780(+) (11)	NA	O23814	Probable phospholipid hydroperoxide glutathione peroxidase	AT4G11600.1	glutathione peroxidase 6 	LOC_Os02g44500.1	"glutathione peroxidase, putative, expressed"	Medtr4g149540.3	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
Ptp.6274.1.S1_x_at	A	A1TS	POPTR_0001s09270	POPTR_0001s09270 (11)	scaffold_1:7088691-7090131(+) (11)	NA	O23814	Probable phospholipid hydroperoxide glutathione peroxidase	AT4G11600.1	glutathione peroxidase 6 	LOC_Os02g44500.1	"glutathione peroxidase, putative, expressed"	Medtr4g149540.3	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
Ptp.6275.1.S1_s_at	A	A1TS	POPTR_0015s11940	POPTR_0015s11940 (11)	scaffold_15:12423667-12424646(+) (11)	NA	NA	NA	AT5G51010.1	Rubredoxin-like superfamily protein 	LOC_Os11g32500.1	"rubredoxin family protein, putative, expressed"	Medtr3g151410.1	Rubredoxin-type Fe(Cys)4 protein 	NA	GO:0046872|metal ion binding||GO:0009055|electron carrier activity	NA
Ptp.6277.2.S1_at	A	A1TS	POPTR_0014s00810	POPTR_0014s00810 (10)	scaffold_14:766529-766585(+) (10)	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	LOC_Os03g12990.1	"phytosulfokines precursor, putative, expressed"	Medtr5g015260.1	Phytosulfokine 	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
Ptp.6278.1.S1_at	A	A1TS	POPTR_0003s13400	POPTR_0003s13400 (9)	scaffold_3:13797952-13798049(-) (9)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6278.1.S1_s_at	A	A1TS	POPTR_0003s13400	POPTR_0003s13400 (11)	scaffold_3:13797402-13797950(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6281.1.S1_at	A	A1TS	POPTR_0001s09200	POPTR_0001s09200 (10)	scaffold_1:7040214-7040552(-) (10)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6284.1.S1_at	A	A1TS	POPTR_0008s06940	POPTR_0008s06940 (11)	scaffold_8:4194515-4194725(+) (11)	NA	Q9XEE6	Zinc finger CCCH domain-containing protein 29	AT2G40140.2	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g090250.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.6286.1.S1_s_at	A	A1TS	POPTR_0017s06610	POPTR_0017s06610 (11)	scaffold_17:5014691-5016842(-) (11)	NA	Q5PP37	Histone-lysine N-methyltransferase ATXR2	AT3G21820.1	histone-lysine N-methyltransferase ATXR2 	LOC_Os04g53700.1	"zinc finger protein, putative, expressed"	Medtr2g103680.1	"Histone-lysine N-methyltransferase ATXR2, putative "	NA	GO:0008270|zinc ion binding	NA
Ptp.6287.1.S1_at	A	A1TS	POPTR_0003s15670	POPTR_0003s15670 (11)	scaffold_3:15430120-15430644(+) (11)	POPTR_0001s12500 (6)	Q9STE8	"Protein TOC75-3, chloroplastic"	AT3G46740.1	translocon at the outer envelope membrane of chloroplasts 75-III 	LOC_Os03g16440.1	"outer membrane protein, OMP85 family, putative, expressed"	Medtr4g084320.1	"Bacterial surface antigen (D15); Chloroplast envelope protein translocase, IAP75 "	NA	NA	GO:0019867|outer membrane
Ptp.6289.1.S1_at	A	A1TS	POPTR_0003s08590	POPTR_0003s08590 (11)	scaffold_3:9987131-9987341(+) (11)	NA	Q94EJ6	Probable methyltransferase PMT14	AT4G18030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.6290.1.S1_at	A	A2TS	POPTR_0010s17170	POPTR_0010s17170 (11)//POPTR_0008s09030 (9)	scaffold_10:15880271-15882181(+) (11)//scaffold_8:5603016-5604897(-) (9)	NA	P18160	Dual specificity protein kinase pyk1	AT1G14000.1	VH1-interacting kinase 	LOC_Os07g43900.1	"protein kinase domain containing protein, expressed"	Medtr5g099160.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6292.1.S1_at	A	A1TS	POPTR_0013s02150	POPTR_0013s02150 (10)	scaffold_13:1292164-1292335(-) (10)	NA	O81635	Kinesin-4	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.6293.1.S1_s_at	A	A2TS	POPTR_0001s25780	POPTR_0001s25780 (11)//POPTR_0009s04990 (11)	scaffold_1:24809164-24809702(-) (11)//scaffold_9:5194964-5195458(-) (11)	NA	Q84T03	DEAD-box ATP-dependent RNA helicase 27	AT3G18600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g58810.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g115790.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.6294.1.S1_a_at	A	A2TS	POPTR_0002s22210	POPTR_0014s16270 (11)//POPTR_0002s22210 (11)	scaffold_14:12356920-12356966(-) (11)//scaffold_2:18876442-18876488(-) (11)	NA	Q9LUB7	Protein OBERON 2	AT5G48160.2	Protein of unknown function (DUF1423) 	LOC_Os12g32980.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr5g105070.1	"Zinc finger, PHD-type; Arabidopsis thaliana 130.7kDa hypothetical protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6294.1.S1_s_at	A	A1TS	POPTR_0014s16270	POPTR_0014s16270 (11)	scaffold_14:12354833-12356759(-) (11)	NA	Q9LUB7	Protein OBERON 2	AT5G48160.2	Protein of unknown function (DUF1423) 	LOC_Os12g32980.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr5g105070.1	"Zinc finger, PHD-type; Arabidopsis thaliana 130.7kDa hypothetical protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6294.2.S1_at	A	A1MS	POPTR_0002s22210	POPTR_0002s22210 (9)	scaffold_2:18876032-18876407(-) (9)	NA	Q9LUB7	Protein OBERON 2	AT5G48160.2	Protein of unknown function (DUF1423) 	LOC_Os12g32980.1	"potyvirus VPg interacting protein, putative, expressed"	Medtr5g105070.1	"Zinc finger, PHD-type; Arabidopsis thaliana 130.7kDa hypothetical protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6295.1.S1_s_at	A	A1TS	POPTR_0001s45250	POPTR_0001s45250 (11)	scaffold_1:45756503-45756706(-) (11)	NA	Q84WP6	NAC domain-containing protein 43	AT2G46770.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g02300.1	"no apical meristem protein, putative, expressed"	Medtr4g041220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.6298.1.S1_at	A	A1TS	POPTR_0019s09640	POPTR_0019s09640 (10)	scaffold_19:11241228-11244834(-) (10)	NA	Q5ZJX4	RNA-binding protein 38	AT1G33470.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g65550.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g041420.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.6299.1.S1_at	A	A1TS	POPTR_0017s00430	POPTR_0017s00430 (11)	scaffold_17:144860-145973(+) (11)	NA	Q54T05	Serine/threonine-protein kinase rio2	AT3G51270.1	protein serine/threonine kinases;ATP binding;catalytics 	LOC_Os01g66520.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr4g165610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.6299.2.S1_s_at	A	A1TS	POPTR_0017s00430	POPTR_0017s00430 (11)	scaffold_17:141356-141799(+) (11)	NA	Q54T05	Serine/threonine-protein kinase rio2	AT3G51270.1	protein serine/threonine kinases;ATP binding;catalytics 	LOC_Os01g66520.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr4g165610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.630.1.S1_at	A	A1TS	POPTR_0008s05390	POPTR_0008s05390 (11)	scaffold_8:3114204-3116399(-) (11)	NA	Q42540	Ubiquitin-conjugating enzyme E2 7	AT5G59300.1	ubiquitin carrier protein 7 	LOC_Os05g38550.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g078810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6300.1.S1_at	A	A1TS	POPTR_0003s07230	POPTR_0003s07230 (11)	scaffold_3:8819235-8819607(+) (11)	NA	O64765	Probable UDP-N-acetylglucosamine pyrophosphorylase	AT1G31070.2	N-acetylglucosamine-1-phosphate uridylyltransferase 1 	LOC_Os08g10600.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.6303.1.S1_at	A	A1TS	POPTR_0004s12260	POPTR_0004s12260 (11)	scaffold_4:11335405-11337720(-) (11)	NA	NA	NA	AT5G08060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os01g55770.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6304.1.S1_at	A	A1TS	POPTR_0003s21190	POPTR_0003s21190 (11)	scaffold_3:19447359-19448578(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
Ptp.6305.2.A1_at	A	A1TS	POPTR_0006s00590	POPTR_0006s00590 (9)	scaffold_6:317443-317877(+) (9)	NA	Q92503	SEC14-like protein 1	AT5G47730.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g10650.1	"CRAL/TRIO domain containing protein, expressed"	Medtr2g032790.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6306.1.S1_s_at	A	A1TS	POPTR_0003s12480	POPTR_0003s12480 (11)	scaffold_3:13041842-13042957(+) (11)	NA	Q5RBB3	RNA-binding protein NOB1	AT5G41190.1	"CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g02360.1	expressed protein	Medtr4g149620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6307.1.S1_at	A	A2TS	POPTR_0019s07850	POPTR_0019s07850 (11)//POPTR_0019s07860 (9)	scaffold_19:9079909-9080398(+) (11)//scaffold_19:9088637-9089126(-) (11)	NA	O04300	"Alpha-1,4-glucan-protein synthase [UDP-forming]"	AT5G16510.2	"Alpha-1,4-glucan-protein synthase family protein "	LOC_Os04g56520.2	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr7g089260.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
Ptp.6308.1.S1_at	A	A1TS	POPTR_0011s12040	POPTR_0011s12040 (9)	scaffold_11:14831702-14831989(+) (9)	NA	NA	NA	AT4G27500.1	proton pump interactor 1 	LOC_Os08g30060.2	"proton pump interactor, putative, expressed"	Medtr2g100530.1	"proton pump interactor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6311.1.S1_s_at	A	A1TS	POPTR_0014s15910	POPTR_0014s15910 (11)	scaffold_14:12001870-12002150(+) (11)	NA	P56331	Eukaryotic translation initiation factor 1A	AT2G04520.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os06g23440.1	"eukaryotic translation initiation factor 1A, putative, expressed"	AC233577_18.1	Eukaryotic initiation factor 1A (eIF-1A) AC233577.5 84946-84143 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
Ptp.6311.2.S1_at	A	A1TS	POPTR_0002s21870	POPTR_0002s21870 (11)	scaffold_2:18563323-18563398(+) (11)	NA	P56331	Eukaryotic translation initiation factor 1A	AT2G04520.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os06g23440.1	"eukaryotic translation initiation factor 1A, putative, expressed"	AC233577_18.1	Eukaryotic initiation factor 1A (eIF-1A) AC233577.5 84946-84143 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
Ptp.6313.1.S1_s_at	A	A1TS	POPTR_0009s14130	POPTR_0009s14130 (11)	scaffold_9:11130001-11131482(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr1g143280.1	Tyrosine protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6315.1.S1_s_at	A	A1TS	POPTR_0018s10170	POPTR_0018s10170 (11)	scaffold_18:11147495-11148080(-) (11)	NA	Q28CH8	Protein YIPF6	AT2G18840.1	Integral membrane Yip1 family protein 	LOC_Os01g64760.1	"Yip1 domain containing protein, expressed"	Medtr8g128780.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6316.1.A1_at	A	A1TS	POPTR_0013s01630	POPTR_0013s01630 (10)	scaffold_13:920801-921036(-) (10)	NA	NA	NA	AT5G27830.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g37940.2	"CRP12 - Cysteine-rich family protein precursor, expressed"	Medtr1g099950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6316.2.S1_at	A	A1TS	POPTR_0005s28120	POPTR_0005s28120 (11)	scaffold_5:25480076-25480436(-) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT1G76660.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). 	LOC_Os01g01390.4	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6317.1.S1_at	A	A1TS	POPTR_0008s07410	POPTR_0008s07410 (9)	scaffold_8:4546959-4548627(+) (9)	NA	NA	NA	AT3G56130.1	biotin/lipoyl attachment domain-containing protein 	NA	NA	Medtr3g097100.1	Biotin/lipoyl attachment 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6318.1.S1_at	A	A1TS	POPTR_0014s07550	POPTR_0014s07550 (10)	scaffold_14:5671949-5672243(+) (10)	NA	Q5R4E0	Methionine adenosyltransferase 2 subunit beta	AT4G00560.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g57990.1	"methionine adenosyltransferase regulatory beta subunit-related, putative, expressed"	Medtr8g034380.1	dTDP-4-dehydrorhamnose reductase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.6319.1.S1_at	A	A1TS	POPTR_0003s11360	POPTR_0003s11360 (11)	scaffold_3:12201801-12202326(+) (11)	NA	Q50EX6	Protein ODORANT1	AT4G12350.1	myb domain protein 42 	LOC_Os09g36250.1	"MYB family transcription factor, putative, expressed"	Medtr5g085860.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6319.2.S1_a_at	A	A1TS	POPTR_0003s11360	POPTR_0003s11360 (11)	scaffold_3:12200434-12200623(+) (11)	POPTR_0001s07830 (7)	Q50EX6	Protein ODORANT1	AT4G12350.1	myb domain protein 42 	LOC_Os09g36250.1	"MYB family transcription factor, putative, expressed"	Medtr5g085860.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.632.1.A1_at	A	A1TS	POPTR_0012s06700	POPTR_0012s06700 (11)	scaffold_12:7127432-7127573(+) (11)	NA	Q9SD88	UPF0139 membrane protein At5g07960	AT5G07960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g54980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6320.1.S1_s_at	A	A2TS	POPTR_0006s19530	POPTR_0006s19540 (11)//POPTR_0006s19530 (11)	scaffold_6:18579718-18580715(+) (11)//scaffold_6:18594020-18595034(+) (11)	NA	P46287	60S ribosomal protein L11	AT5G45775.2	Ribosomal L5P family protein 	LOC_Os02g14059.1	"ribosomal protein L5, putative, expressed"	Medtr8g050250.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6320.1.S1_x_at	A	A2TS	POPTR_0006s19530	POPTR_0006s19540 (11)//POPTR_0006s19530 (11)	scaffold_6:18579336-18580455(+) (10)//scaffold_6:18593638-18594774(+) (11)	NA	P46287	60S ribosomal protein L11	AT5G45775.2	Ribosomal L5P family protein 	LOC_Os02g14059.1	"ribosomal protein L5, putative, expressed"	Medtr8g050250.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6321.1.S1_at	A	A1TS	POPTR_0010s26150	POPTR_0010s26150 (10)	scaffold_10:21479737-21480197(-) (10)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT5G08570.1	Pyruvate kinase family protein 	LOC_Os04g58110.1	"pyruvate kinase, putative, expressed"	Medtr4g115180.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.6322.2.A1_a_at	A	A1TS	POPTR_0007s11290	POPTR_0007s11290 (11)	scaffold_7:11639503-11640061(-) (11)	NA	NA	NA	AT3G50590.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os09g24260.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g097120.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6323.1.S1_s_at	A	A1TS	POPTR_0006s27020	POPTR_0006s27020 (11)	scaffold_6:25049742-25049951(+) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.6324.1.S1_at	A	A1TS	POPTR_0015s07500	POPTR_0015s07500 (11)	scaffold_15:8796685-8796847(+) (11)	NA	NA	NA	AT5G62550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). 	LOC_Os06g38960.2	expressed protein	Medtr8g112630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6326.1.S1_at	A	A1TS	POPTR_0003s15400	POPTR_0003s15400 (11)	scaffold_3:15185765-15186038(-) (11)	NA	Q8L7E3	Vacuolar-sorting receptor 7	AT1G30900.1	VACUOLAR SORTING RECEPTOR 6 	LOC_Os06g45380.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6327.1.S1_at	A	A1TS	POPTR_0001s03440	POPTR_0001s03440 (10)	scaffold_1:2782734-2783002(-) (10)	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os02g39850.1	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.6328.2.S1_s_at	A	A1TS	POPTR_0011s16520	POPTR_0011s16520 (11)	scaffold_11:18399051-18399389(+) (11)	NA	P18025	Tubulin beta-1 chain	AT5G23860.2	tubulin beta 8 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.6329.1.S1_at	A	A1TS	POPTR_0001s02790	POPTR_0001s02790 (11)	scaffold_1:2189517-2190056(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6330.1.S1_s_at	A	A1TS	POPTR_0012s10420	POPTR_0012s10420 (11)	scaffold_12:11201915-11202273(+) (11)	NA	P35659	Protein DEK	AT3G48710.1	DEK domain-containing chromatin associated protein 	LOC_Os01g70020.1	"DEK C terminal domain containing protein, expressed"	Medtr3g150850.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6331.1.S1_at	A	A1MS	POPTR_0006s08340	POPTR_0006s08340 (11)	scaffold_6:6069148-6069203(-) (11)	NA	Q8GW19	CAAX prenyl protease 2	AT2G36305.1	farnesylated protein-converting enzyme 2 	LOC_Os05g28950.1	"CAAX amino terminal protease family protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
Ptp.6331.1.S1_s_at	A	A1TS	POPTR_0006s08340	POPTR_0006s08340 (11)	scaffold_6:6068965-6069697(-) (11)	NA	Q8GW19	CAAX prenyl protease 2	AT2G36305.1	farnesylated protein-converting enzyme 2 	LOC_Os05g28950.1	"CAAX amino terminal protease family protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
Ptp.6332.1.S1_at	A	A1TS	POPTR_0014s04870	POPTR_0014s04870 (10)	scaffold_14:3760544-3762743(+) (10)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.6334.1.S1_at	A	A1TS	POPTR_0006s11840	POPTR_0006s11840 (9)	scaffold_6:9034076-9034273(+) (9)	NA	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400	AT2G36570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g04230.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g073620.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.6335.2.A1_a_at	A	A1TS	POPTR_0014s06280	POPTR_0014s06280 (11)	scaffold_14:4788540-4789204(+) (11)	NA	Q9SLN5	Methionine aminopeptidase 1A	AT2G45240.1	methionine aminopeptidase 1A 	LOC_Os10g36470.2	"peptidase, M24 family protein, putative, expressed"	Medtr5g017630.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	GO:0008270|zinc ion binding	NA
Ptp.6335.2.A1_s_at	A	A1TS	POPTR_0014s06280	POPTR_0014s06280 (11)	scaffold_14:4788162-4789304(+) (11)	NA	Q9SLN5	Methionine aminopeptidase 1A	AT2G45240.1	methionine aminopeptidase 1A 	LOC_Os10g36470.2	"peptidase, M24 family protein, putative, expressed"	Medtr5g017630.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	GO:0008270|zinc ion binding	NA
Ptp.6336.1.S1_s_at	A	A1TS	POPTR_0009s06170	POPTR_0009s06170 (11)	scaffold_9:6035071-6036665(-) (11)	NA	NA	NA	AT3G52040.1	unknown protein; Has 37 Blast hits to 37 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g16550.1	expressed protein	Medtr8g105920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6337.1.S1_s_at	A	A1TS	POPTR_0014s04380	POPTR_0014s04380 (11)	scaffold_14:3418604-3420366(-) (11)	NA	NA	NA	AT3G60210.1	GroES-like family protein 	LOC_Os10g41710.1	"chaperonin, putative, expressed"	Medtr8g009080.1	GroES-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.6339.1.S1_at	A	A1TS	POPTR_0004s21250	POPTR_0004s21250 (11)	scaffold_4:20453341-20453550(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6339.1.S1_s_at	A	A1TS	POPTR_0004s21250	POPTR_0004s21250 (11)	scaffold_4:20452996-20453289(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.634.1.S1_s_at	A	A1TS	POPTR_0007s11880	POPTR_0007s11880 (11)	scaffold_7:12238448-12238754(-) (11)	NA	Q8VZB9	60S ribosomal protein L10a-1	AT1G08360.1	Ribosomal protein L1p/L10e family 	LOC_Os01g64090.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.6340.1.S1_at	A	A1TS	POPTR_0013s15180	POPTR_0013s15180 (9)	scaffold_13:15205397-15205767(+) (9)	NA	NA	NA	AT5G58375.1	Methyltransferase-related protein 	LOC_Os11g02200.1	expressed protein	Medtr5g082910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6346.1.A1_at	A	A1TS	POPTR_0013s11060	POPTR_0013s11060 (11)	scaffold_13:11725722-11726194(+) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6346.1.A1_x_at	A	A1TS	POPTR_0013s11060	POPTR_0013s11060 (11)	scaffold_13:11725726-11726278(+) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6347.1.S1_s_at	A	A1TS	POPTR_0009s13760	POPTR_0009s13760 (11)	scaffold_9:10910222-10910279(-) (11)	NA	NA	NA	AT4G38580.1	farnesylated protein 6 	LOC_Os04g17100.1	"heavy metal-associated domain containing protein, expressed"	Medtr4g098440.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.6349.2.A1_at	A	A1MA	POPTR_0013s14860	POPTR_0013s14860 (9)	scaffold_13:14956886-14957279(+) (9)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.6351.1.S1_at	A	A1TS	POPTR_0017s08600	POPTR_0017s08600 (10)	scaffold_1108:346-548(-) (10)//scaffold_17:7215500-7215702(-) (10)	POPTR_1108s00200 (8)	Q54Z26	Serine hydroxymethyltransferase 1	AT4G13930.1	serine hydroxymethyltransferase 4 	LOC_Os12g22030.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr4g133030.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.6352.1.A1_s_at	A	A1TS	POPTR_0002s24400	POPTR_0002s24400 (11)	scaffold_2:21777180-21779221(-) (11)	NA	P49098	Cytochrome b5	AT2G32720.1	cytochrome B5 isoform B 	LOC_Os01g73990.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr4g023560.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.6355.2.S1_at	A	A1TS	POPTR_0008s06370	POPTR_0008s06370 (11)	scaffold_8:3774583-3774830(+) (11)	NA	Q9LMK0	60S ribosomal protein L35a-1	AT1G07070.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6356.1.S1_s_at	A	A1TS	POPTR_0001s12390	POPTR_0001s12390 (11)	scaffold_1:9606849-9607060(+) (11)	NA	Q0JPA6	Salt stress root protein RS1	AT4G20260.3	plasma-membrane associated cation-binding protein 1 	LOC_Os02g18410.1	"salt stress root protein RS1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6357.1.S1_s_at	A	A1TS	POPTR_0007s05050	POPTR_0007s05050 (9)	scaffold_7:3253997-3254345(+) (9)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6358.1.S1_s_at	A	A1TS	POPTR_0014s18430	POPTR_0014s18430 (11)	scaffold_14:15597522-15597817(-) (11)	NA	O82662	"Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial"	AT2G20420.1	ATP citrate lyase (ACL) family protein 	LOC_Os02g40830.1	"succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6359.1.S1_s_at	A	A1TS	POPTR_0019s00790	POPTR_0019s00790 (11)	scaffold_19:531503-531705(+) (11)	NA	Q7XQP4	Serine/threonine-protein kinase SAPK7	AT1G10940.1	Protein kinase superfamily protein 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g144500.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6360.1.S1_at	A	A1TS	POPTR_0007s06220	POPTR_0007s06220 (11)	scaffold_7:4389299-4389667(-) (11)	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6360.3.A1_at	A	A1TS	POPTR_0014s01890	POPTR_0014s01890 (11)	scaffold_14:1724747-1726007(+) (11)	NA	Q9STX1	Acyl-CoA-binding domain-containing protein 3	AT4G24230.5	acyl-CoA-binding domain 3 	LOC_Os03g14000.1	"acyl CoA binding protein, putative, expressed"	NA	NA	NA	GO:0000062|acyl-CoA binding	NA
Ptp.6361.1.S1_at	A	A1TS	POPTR_0018s14300	POPTR_0018s14300 (11)	scaffold_18:14528704-14528989(-) (11)	NA	Q6Z2W3	Auxin response factor 5	AT1G30330.1	auxin response factor 6 	LOC_Os02g04810.1	"auxin response factor 5, putative, expressed"	Medtr4g161090.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.6361.1.S1_s_at	A	A1TS	POPTR_0018s14300	POPTR_0018s14300 (11)	scaffold_18:14528563-14528866(-) (11)	NA	Q6Z2W3	Auxin response factor 5	AT1G30330.1	auxin response factor 6 	LOC_Os02g04810.1	"auxin response factor 5, putative, expressed"	Medtr4g161090.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.6362.1.S1_s_at	A	A1TS	POPTR_0014s15640	POPTR_0014s15640 (11)	scaffold_14:11661581-11662937(+) (11)	NA	NA	NA	AT2G32970.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. 	LOC_Os02g53210.4	expressed protein	Medtr3g109930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6363.3.S1_at	A	A1TA	POPTR_0001s04270	POPTR_0001s04270 (11)	scaffold_1:3375337-3375645(+) (11)	POPTR_0003s21170 (7)	NA	NA	AT4G08810.1	calcium ion binding 	LOC_Os07g43990.1	expressed protein	Medtr4g134130.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6364.1.S1_at	A	A1TS	POPTR_0004s05860	POPTR_0004s05860 (11)	scaffold_4:4588868-4589111(-) (11)	NA	NA	NA	AT2G42760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). 	LOC_Os06g35770.1	expressed protein	Medtr4g135240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6365.1.S1_at	A	A1TS	POPTR_0008s09390	POPTR_0008s09390 (11)	scaffold_8:5817078-5817159(+) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT3G29360.2	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25700.3	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr5g046790.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.6366.1.S1_s_at	A	A1TS	POPTR_0001s22780	POPTR_0001s22780 (11)	scaffold_1:21673357-21673746(+) (11)	NA	Q99020	Heterogeneous nuclear ribonucleoprotein A/B	AT2G41060.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g16090.1	"RNA binding protein, putative, expressed"	Medtr5g095270.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6367.1.S1_s_at	A	A1TS	POPTR_0002s14110	POPTR_0002s14110 (11)	scaffold_2:10459174-10459391(-) (11)	NA	Q76E23	Eukaryotic translation initiation factor 4G	AT3G60240.3	eukaryotic translation initiation factor 4G 	LOC_Os07g36940.2	"eukaryotic translation initiation factor 4G, putative, expressed"	Medtr8g008440.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
Ptp.6368.1.S1_at	A	A1TS	POPTR_0014s13810	POPTR_0014s13810 (11)	scaffold_14:10101760-10105991(-) (11)	NA	O96622	Actin-related protein 2/3 complex subunit 1	AT2G30910.3	actin-related protein C1A 	LOC_Os02g57220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g064430.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.637.1.S1_at	A	A1TS	POPTR_0001s11230	POPTR_0001s11230 (11)	scaffold_1:8712052-8712536(+) (11)	NA	O82486	N6-adenosine-methyltransferase MT-A70-like	AT4G10760.1	mRNAadenosine methylase 	LOC_Os02g45110.1	"MT-A70 domain containing protein, expressed"	Medtr4g158130.1	MT-A70 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008168|methyltransferase activity	NA
Ptp.6370.3.S1_a_at	A	A1TS	POPTR_0010s20710	POPTR_0010s20710 (11)	scaffold_10:18186187-18186672(-) (11)	NA	Q9VD44	Poly(A) RNA polymerase gld-2 homolog A	AT2G39740.1	Nucleotidyltransferase family protein 	LOC_Os01g62790.1	expressed protein	Medtr2g134890.1	PAP/25A-associated 	NA	GO:0016779|nucleotidyltransferase activity	NA
Ptp.6371.1.S1_at	A	A1TS	POPTR_0001s07710	POPTR_0001s07710 (11)	scaffold_1:5841777-5842448(-) (11)	NA	P49042	Vacuolar-processing enzyme	AT1G62710.1	beta vacuolar processing enzyme 	LOC_Os02g43010.1	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr8g106310.3	"Peptidase C13, legumain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6372.1.S1_at	A	A1TS	POPTR_0001s19370	POPTR_0001s19370 (10)	scaffold_1:17018511-17021342(+) (10)	NA	NA	NA	AT1G15370.1	SNARE-like superfamily protein 	LOC_Os03g63910.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g126320.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6373.1.S1_s_at	A	A1TS	POPTR_0013s01370	POPTR_0013s01370 (11)	scaffold_13:786835-787257(+) (11)	NA	Q0WRB2	Probable protein phosphatase 2C 73	AT5G27930.2	Protein phosphatase 2C family protein 	LOC_Os05g29030.2	"protein phosphatase 2C, putative, expressed"	Medtr7g138290.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6374.1.S1_a_at	A	A1TS	POPTR_0001s28090	POPTR_0001s28090 (11)	scaffold_1:26882213-26883131(-) (11)	NA	P34893	10 kDa chaperonin	AT1G14980.1	chaperonin 10 	LOC_Os03g25050.1	"chaperonin, putative, expressed"	AC225518_13.1	GroES-like AC225518.12 38278-37581 E EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.6375.1.S1_s_at	A	A1TS	POPTR_0005s21110	POPTR_0005s21110 (11)	scaffold_5:20247301-20248038(-) (11)	POPTR_0002s07170 (6)	C0LGV1	LRR receptor-like serine/threonine-protein kinase RCH1	AT5G48940.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os04g04330.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g124960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.6376.1.S1_s_at	A	A1TS	POPTR_0010s14710	POPTR_0010s14710 (11)	scaffold_10:14224103-14225410(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G13635.2	DNA glycosylase superfamily protein 	LOC_Os08g38170.1	"methyladenine glycosylase, putative, expressed"	Medtr8g077310.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
Ptp.6378.1.S1_at	A	A1TS	POPTR_0007s11920	POPTR_0007s11920 (11)	scaffold_7:12266378-12266852(-) (11)	NA	P49082	Guanine nucleotide-binding protein alpha-1 subunit	AT2G23460.1	extra-large G-protein 1 	LOC_Os12g40190.1	"G-protein alpha subunit, putative, expressed"	Medtr5g018540.2	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
Ptp.6379.1.S1_at	A	A1TS	POPTR_0007s12370	POPTR_0007s12370 (11)	scaffold_7:12697796-12697864(+) (11)	NA	Q94A43	BES1/BZR1 homolog protein 2	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6379.1.S1_s_at	A	A1TS	POPTR_0007s12370	POPTR_0007s12370 (11)	scaffold_7:12698035-12698130(+) (11)	NA	Q94A43	BES1/BZR1 homolog protein 2	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.638.1.S1_at	A	A1TS	POPTR_0010s20330	POPTR_0010s20330 (10)	scaffold_10:17983066-17983358(+) (10)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G05940.1	ROP guanine nucleotide exchange factor 5 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr3g092590.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
Ptp.6380.1.S1_at	A	A1TS	POPTR_0004s11620	POPTR_0004s11620 (9)	scaffold_4:10400819-10401283(-) (9)	NA	Q9LFW3	COBRA-like protein 4	AT5G15630.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os03g30250.1	"COBRA-like protein precursor, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6381.1.S1_s_at	A	A1TS	POPTR_0004s16420	POPTR_0004s16420 (11)	scaffold_4:16871915-16872985(-) (11)	NA	O48670	Protein RER1A	AT4G39220.1	Rer1 family protein 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
Ptp.6382.1.S1_at	A	A1TS	POPTR_0008s06240	POPTR_0008s06240 (11)	scaffold_8:3676003-3679011(+) (11)	NA	Q8BZI6	Uncharacterized protein C22orf13 homolog	AT5G05930.1	guanylyl cyclase 1 	LOC_Os05g37950.1	"guanylyl cyclase, putative, expressed"	Medtr3g092620.1	"Uncharacterized protein C22orf13 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6383.1.S1_a_at	A	A5TS	POPTR_0019s12450	POPTR_0019s12450 (11)//POPTR_0086s00220 (10)//POPTR_0144s00200 (10)//POPTR_0086s00260 (10)//POPTR_0104s00220 (10)	scaffold_104:25864-26168(-) (11)//scaffold_144:1842-2146(+) (11)//scaffold_19:13509814-13510118(-) (11)//scaffold_86:21926-22230(+) (11)//scaffold_86:42008-50315(+) (11)	POPTR_0086s00240 (7)	Q9SEU8	"Thioredoxin M2, chloroplastic"	AT4G03520.1	Thioredoxin superfamily protein 	LOC_Os02g42700.1	"thioredoxin, putative, expressed"	Medtr4g129950.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.6384.1.S1_a_at	A	A1TS	POPTR_0002s12560	POPTR_0002s12560 (11)	scaffold_2:9350711-9350874(+) (11)	NA	Q6X7J9	WUSCHEL-related homeobox 4	AT1G46480.1	WUSCHEL related homeobox 4 	LOC_Os04g55590.1	"homeobox domain containing protein, expressed"	Medtr1g024140.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6384.2.S1_at	A	A1TS	POPTR_0002s12560	POPTR_0002s12560 (11)	scaffold_2:9350951-9351126(+) (11)	NA	Q6X7J9	WUSCHEL-related homeobox 4	AT1G46480.1	WUSCHEL related homeobox 4 	LOC_Os04g55590.1	"homeobox domain containing protein, expressed"	Medtr1g024140.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6386.1.S1_at	A	A1TS	POPTR_0007s05120	POPTR_0007s05120 (11)	scaffold_7:3313699-3314113(-) (11)	NA	Q40522	Ras-related protein Rab11D	AT5G65270.1	RAB GTPase homolog A4A 	LOC_Os10g23100.1	"ras-related protein, putative, expressed"	Medtr3g101960.1	Ras GTPase; 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6387.1.S1_s_at	A	A1TS	POPTR_0010s11830	POPTR_0010s11830 (9)	scaffold_10:11973826-11973872(-) (9)	NA	NA	NA	AT5G17190.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g50210.1	"erwinia induced protein 2, putative, expressed"	Medtr4g157430.1	"Erwinia induced protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6388.1.S1_at	A	A1TS	POPTR_0001s04500	POPTR_0001s04500 (11)	scaffold_1:3534786-3535252(-) (11)	NA	Q07100	Serine/threonine-protein phosphatase PP2A-4 catalytic subunit	AT2G42500.1	protein phosphatase 2A-3 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	Medtr4g133950.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.6389.1.A1_s_at	A	A1TS	POPTR_0005s17170	POPTR_0005s17170 (11)	scaffold_5:14327968-14328168(+) (11)	NA	Q9D2H9	Leucine-rich repeat-containing protein 50	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.6389.2.S1_at	A	A1TS	POPTR_0005s17170	POPTR_0005s17170 (11)	scaffold_5:14326892-14327440(+) (11)	NA	Q9D2H9	Leucine-rich repeat-containing protein 50	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.639.1.S1_at	A	A1TS	POPTR_0013s08220	POPTR_0013s08220 (11)	scaffold_13:7253283-7255644(+) (11)	NA	P53665	"Acyl carrier protein, mitochondrial"	AT1G65290.1	mitochondrial acyl carrier protein 2 	LOC_Os03g22950.1	"acyl carrier protein, putative, expressed"	Medtr7g090000.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
Ptp.6390.1.S1_s_at	A	A1TS	POPTR_0014s10420	POPTR_0014s10420 (9)	scaffold_14:7795123-7795541(-) (9)	NA	NA	NA	AT4G01575.1	"serine protease inhibitor, Kazal-type family protein "	LOC_Os01g59610.1	"KAZ1 - Kazal-type serine protease inhibitor precursor, expressed"	Medtr3g122130.1	"serine protease inhibitor, Kazal-type family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6391.1.S1_s_at	A	A1TS	POPTR_0001s23950	POPTR_0001s23950 (11)	scaffold_1:23332063-23332195(-) (11)	NA	NA	NA	AT3G13510.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6392.1.S1_at	A	A1TS	POPTR_0009s08180	POPTR_0009s08180 (11)	scaffold_9:7531047-7532016(+) (11)	NA	NA	NA	AT5G09570.1	Cox19-like CHCH family protein 	LOC_Os03g48080.1	"CHCH domain containing protein, expressed"	Medtr4g121310.2	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6392.1.S1_x_at	A	A1TS	POPTR_0009s08180	POPTR_0009s08180 (11)	scaffold_9:7531047-7532016(+) (11)	NA	NA	NA	AT5G09570.1	Cox19-like CHCH family protein 	LOC_Os03g48080.1	"CHCH domain containing protein, expressed"	Medtr4g121310.2	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6393.1.S1_at	A	A1TS	POPTR_0017s12760	POPTR_0017s12760 (11)	scaffold_17:12927952-12929063(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT3G29360.2	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25690.1	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.6395.1.S1_at	A	A1TS	POPTR_0014s15870	POPTR_0014s15870 (11)	scaffold_14:11957329-11957402(-) (11)	NA	Q84JU4	Protein-tyrosine-phosphatase IBR5	AT2G04550.1	indole-3-butyric acid response 5 	LOC_Os06g20340.1	"dual specificity protein phosphatase, putative, expressed"	Medtr5g092050.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.6396.1.S1_at	A	A1TS	POPTR_0009s12750	POPTR_0009s12750 (9)	scaffold_9:10360569-10360702(+) (9)	NA	NA	NA	AT4G34700.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os06g50000.1	"LYR motif containing protein, putative, expressed"	Medtr3g163080.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6396.1.S1_s_at	A	A1TS	POPTR_0009s12750	POPTR_0009s12750 (11)	scaffold_9:10360475-10360945(+) (11)	NA	NA	NA	AT4G34700.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os06g50000.1	"LYR motif containing protein, putative, expressed"	Medtr3g163080.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6397.1.A1_at	A	A1TS	POPTR_0005s04160	POPTR_0005s04160 (11)	scaffold_5:2765928-2766502(-) (11)	NA	Q9C7T4	Transcription factor bHLH96	AT1G72210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g08930.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr1g099080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.6399.1.S1_at	A	A1TS	POPTR_0001s18260	POPTR_0001s18260 (9)	scaffold_1:15334232-15334271(+) (9)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.6399.1.S1_s_at	A	A1TS	POPTR_0001s18260	POPTR_0001s18260 (11)	scaffold_1:15334272-15334642(+) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.64.1.S1_s_at	A	A1TS	POPTR_0001s15900	POPTR_0001s15900 (11)	scaffold_1:12733917-12734272(-) (11)	NA	Q9S7J8	Copper-transporting ATPase RAN1	AT5G44790.1	copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1) 	LOC_Os02g07630.1	"copper-transporting ATPase, putative, expressed"	Medtr4g089740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
Ptp.640.1.S1_s_at	A	A1TS	POPTR_0006s14520	POPTR_0006s14520 (11)	scaffold_6:11860897-11861295(-) (11)	NA	Q9FEW9	12-oxophytodienoate reductase 3	AT2G06050.3	oxophytodienoate-reductase 3 	LOC_Os08g35740.2	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006840.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.640.2.S1_s_at	A	A2TS	POPTR_0004s22180	POPTR_0004s22180 (11)//POPTR_0006s14520 (10)	scaffold_4:21118723-21118962(-) (11)//scaffold_6:11862337-11863722(-) (10)	NA	Q9FEW9	12-oxophytodienoate reductase 3	AT2G06050.3	oxophytodienoate-reductase 3 	LOC_Os08g35740.1	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006830.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.6402.1.A1_at	A	A1TS	POPTR_0011s17230	POPTR_0011s17230 (9)	scaffold_11:18819365-18819746(-) (9)	NA	Q9FG77	Probable WRKY transcription factor 2	AT5G56270.1	WRKY DNA-binding protein 2 	LOC_Os08g38990.4	"OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6402.1.A1_s_at	A	A1TS	POPTR_0011s17230	POPTR_0011s17230 (11)	scaffold_11:18819514-18819717(-) (11)	NA	Q9FG77	Probable WRKY transcription factor 2	AT5G56270.1	WRKY DNA-binding protein 2 	LOC_Os08g38990.4	"OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6404.1.S1_at	A	A1TS	POPTR_0001s34940	POPTR_0001s34940 (11)	scaffold_1:33193114-33193744(+) (11)	NA	NA	NA	AT3G01510.1	like SEX4 1 	LOC_Os08g29160.1	"5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.6405.1.S1_s_at	A	A1TS	POPTR_0010s19000	POPTR_0010s19000 (11)	scaffold_10:17055594-17056012(+) (11)	NA	NA	NA	AT5G05365.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g61070.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g091130.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.6407.1.S1_at	A	A1TS	POPTR_0002s07090	POPTR_0002s07090 (10)	scaffold_2:4822544-4823632(-) (10)	NA	NA	NA	AT1G21320.2	nucleotide binding;nucleic acid binding 	LOC_Os06g03690.2	"RNA recognition motif containing protein, putative, expressed"	AC231338_10.1	RNA-binding region RNP-1 (RNA recognition motif) AC231338.1 40539-47571 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
Ptp.641.1.S1_s_at	A	A1TS	POPTR_0001s22320	POPTR_0001s22320 (11)	scaffold_1:20933250-20934956(+) (11)	POPTR_0009s02200 (6)	Q9SJF0	Serine/threonine-protein phosphatase BSL2	AT1G08420.1	BRI1 suppressor 1 (BSU1)-like 2 	LOC_Os12g42310.1	"serine/threonine-protein phosphatase BSL2, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.6410.1.S1_at	A	A1TS	POPTR_0018s13090	POPTR_0018s13090 (11)	scaffold_18:13540182-13541425(-) (11)	NA	B2G8V5	50S ribosomal protein L36	AT5G20180.2	Ribosomal protein L36 	LOC_Os03g59720.1	"ribosomal protein L36 containing protein, expressed"	Medtr8g120480.1	Ribosomal protein L36 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6411.1.S1_a_at	A	A1TS	POPTR_0010s19770	POPTR_0010s19770 (11)	scaffold_10:17595154-17595443(-) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6411.2.S1_a_at	A	A1TS	POPTR_0010s19770	POPTR_0010s19770 (11)	scaffold_10:17595235-17595443(-) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6413.1.S1_s_at	A	A1TS	POPTR_0018s03920	POPTR_0018s03920 (11)	scaffold_18:3338175-3339854(-) (11)	NA	NA	NA	AT4G31340.1	myosin heavy chain-related 	LOC_Os08g40790.1	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6414.1.S1_at	A	A1TS	POPTR_0009s15100	POPTR_0009s15100 (11)	scaffold_9:11710876-11711099(+) (11)	NA	Q9SGD6	"Arogenate dehydratase/prephenate dehydratase 6, chloroplastic"	AT1G08250.1	arogenate dehydratase 6 	LOC_Os04g33390.1	"prephenate dehydratase domain containing protein, expressed"	Medtr4g073340.1	Prephenate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process	GO:0004664|prephenate dehydratase activity	NA
Ptp.6417.1.S1_s_at	A	A2TS	POPTR_0016s11750	POPTR_0016s11750 (11)//POPTR_0588s00200 (11)	scaffold_16:10931672-10932126(-) (11)//scaffold_588:12524-12978(-) (11)	NA	Q9M392	Reticulon-like protein B12	AT3G54120.1	Reticulon family protein 	LOC_Os01g63240.1	"reticulon domain containing protein, putative, expressed"	Medtr4g012120.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.6418.2.S1_a_at	A	A1TS	POPTR_0002s25100	POPTR_0002s25100 (11)	scaffold_2:22302440-22302743(-) (11)	NA	P19892	Ras-related protein ARA-1	AT1G05810.1	RAB GTPase homolog A5E 	LOC_Os08g41340.1	"ras-related protein, putative, expressed"	Medtr7g046180.1	"Ras-related protein ARA-1, putative "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.642.1.S1_x_at	A	A2TS	POPTR_0004s06190	POPTR_0004s06190 (11)//POPTR_1064s00200 (11)	scaffold_1064:3868-4266(-) (11)//scaffold_4:4917645-4918041(+) (11)	NA	P51418	60S ribosomal protein L18a-2	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6420.1.S1_at	A	A1TS	POPTR_0002s23290	POPTR_0002s23290 (11)	scaffold_2:20746296-20746775(-) (11)	NA	Q9SEE4	Pirin-like protein	AT2G43120.1	RmlC-like cupins superfamily protein 	LOC_Os03g62790.1	"pirin, putative, expressed"	Medtr5g101700.1	"Pirin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6421.1.S1_at	A	A1TS	POPTR_0014s08210	POPTR_0014s08210 (11)	scaffold_14:6092461-6093328(+) (11)	NA	P32260	"Cysteine synthase, chloroplastic/chromoplastic"	AT3G61440.1	cysteine synthase C1 	LOC_Os04g08350.2	"cysteine synthase, chloroplast/chromoplast precursor, putative, expressed"	Medtr7g087780.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.6422.1.A1_s_at	A	A1TS	POPTR_0006s08630	POPTR_0006s08630 (11)	scaffold_6:6311646-6312106(-) (11)	NA	O80932	Expansin-A3	AT2G37640.1	Barwin-like endoglucanases superfamily protein 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6423.1.S1_at	A	A1TS	POPTR_0010s12680	POPTR_0010s12680 (11)	scaffold_10:12673804-12674552(-) (11)	NA	P17614	"ATP synthase subunit beta, mitochondrial"	AT5G08680.1	ATP synthase alpha/beta family protein 	LOC_Os01g49190.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.6423.1.S1_s_at	A	A2TS	POPTR_0008s12550	POPTR_0010s12680 (11)//POPTR_0008s12550 (11)	scaffold_10:12674159-12674525(-) (11)//scaffold_8:8133367-8133727(+) (11)	NA	P17614	"ATP synthase subunit beta, mitochondrial"	AT5G08680.1	ATP synthase alpha/beta family protein 	LOC_Os01g49190.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.6424.1.S1_at	A	A1TS	POPTR_0003s17680	POPTR_0003s17680 (11)	scaffold_3:16983859-16984396(-) (11)	NA	NA	NA	AT3G24160.1	putative type 1 membrane protein 	LOC_Os08g45220.1	expressed protein	Medtr2g130050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6426.1.A1_at	A	A1TS	POPTR_0014s11730	POPTR_0014s11730 (11)	scaffold_14:8702030-8702144(+) (11)	NA	Q94KD8	Probable beta-D-xylosidase 2	AT1G02640.1	beta-xylosidase 2 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6427.1.S1_at	A	A1TS	POPTR_0002s08940	POPTR_0002s08940 (11)	scaffold_2:6319709-6319901(-) (11)	NA	NA	NA	AT4G08460.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.1	expressed protein	Medtr3g098400.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6428.1.S1_at	A	A1TS	POPTR_0003s11220	POPTR_0003s11220 (9)	scaffold_3:12070857-12071309(+) (9)	NA	Q9SU40	Monocopper oxidase-like protein SKU5	AT4G12420.2	Cupredoxin superfamily protein 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.6429.1.S1_at	A	A1TS	POPTR_0004s01030	POPTR_0004s01030 (11)	scaffold_4:509824-510066(-) (11)	NA	P54260	"Aminomethyltransferase, mitochondrial"	AT1G11860.3	Glycine cleavage T-protein family 	LOC_Os04g53230.1	"aminomethyltransferase, putative, expressed"	Medtr8g147030.1	Glycine cleavage system T protein 	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
Ptp.6429.1.S1_s_at	A	A2TS	POPTR_0004s01030	POPTR_0021s00380 (11)//POPTR_0004s01030 (11)	scaffold_21:117228-117690(-) (11)//scaffold_4:509806-510268(-) (11)	NA	P54260	"Aminomethyltransferase, mitochondrial"	AT1G11860.3	Glycine cleavage T-protein family 	LOC_Os04g53230.1	"aminomethyltransferase, putative, expressed"	Medtr8g147030.1	Glycine cleavage system T protein 	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
Ptp.6430.1.S1_at	A	A1TS	POPTR_0010s07420	POPTR_0010s07420 (11)	scaffold_10:8478685-8480266(+) (11)	NA	Q12486	Putative uncharacterized hydrolase YOR131C	AT2G33255.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os02g57100.1	expressed protein	Medtr1g087430.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.6433.1.S1_s_at	A	A1TS	POPTR_0018s08770	POPTR_0018s08770 (9)	scaffold_18:9692985-9693167(-) (9)	NA	O22025	Protein cfxQ homolog	AT3G24530.1	AAA-type ATPase family protein / ankyrin repeat family protein 	LOC_Os02g16660.1	"cbxX, chromosomal, putative, expressed"	Medtr5g026960.1	Ankyrin 	NA	GO:0005524|ATP binding	NA
Ptp.6434.1.S1_s_at	A	A1TS	POPTR_0013s11870	POPTR_0013s11870 (11)	scaffold_13:12497177-12497439(-) (11)	POPTR_0019s11470 (7)	O66119	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AT1G34430.1	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os12g08170.1	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	AC233660_8.1	Biotin/lipoyl attachment; Dihydrolipoamide succinyltransferase AC233660.2 38835-37267 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
Ptp.6435.1.S1_at	A	A1TS	POPTR_0009s06890	POPTR_0009s06890 (11)	scaffold_9:6560360-6561174(-) (11)	NA	P74516	Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase slr0992	AT5G26880.2	AGAMOUS-like 26 	LOC_Os08g39600.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr3g030550.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.6435.1.S1_s_at	A	A1TS	POPTR_0009s06890	POPTR_0009s06890 (11)	scaffold_9:6560724-6561152(-) (11)	NA	P74516	Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase slr0992	AT5G26880.2	AGAMOUS-like 26 	LOC_Os08g39600.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr3g030550.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.6436.1.S1_a_at	A	A1TS	POPTR_0007s12350	POPTR_0007s12350 (11)	scaffold_7:12676284-12676599(+) (11)	NA	Q9SDY5	NEDD8-conjugating enzyme Ubc12	AT4G36800.2	RUB1 conjugating enzyme 1 	LOC_Os10g11260.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6437.1.S1_s_at	A	A1TS	POPTR_0004s16090	POPTR_0004s16090 (11)	scaffold_4:16542377-16542910(+) (11)	NA	Q0WW26	Coatomer subunit gamma	AT4G34450.1	"coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative "	LOC_Os07g10150.1	"coatomer subunit gamma-2, putative, expressed"	Medtr3g159510.1	"Adaptin, N-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; ; "	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat||GO:0005798|Golgi-associated vesicle
Ptp.6439.1.S1_at	A	A1TS	POPTR_0005s02030	POPTR_0005s02030 (11)	scaffold_5:1323080-1323820(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
Ptp.6439.1.S1_s_at	A	A2TS	POPTR_0005s02030	POPTR_0013s01220 (11)//POPTR_0005s02030 (11)	scaffold_13:670517-670937(+) (11)//scaffold_5:1323346-1323776(+) (10)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
Ptp.644.1.S1_at	A	A1TS	POPTR_0003s09950	POPTR_0003s09950 (11)	scaffold_3:11100388-11100960(-) (11)	NA	P52581	Isoflavone reductase homolog	AT1G32100.1	pinoresinol reductase 1 	LOC_Os12g16410.1	"isoflavone reductase, putative, expressed"	Medtr5g027470.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.6440.1.S1_at	A	A1TS	POPTR_0015s14390	POPTR_0015s14390 (9)	scaffold_15:14009179-14009843(-) (9)	NA	P54397	39 kDa FK506-binding nuclear protein	AT4G25340.1	FK506 BINDING PROTEIN 53 	LOC_Os04g36890.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g008740.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.6442.1.S1_at	A	A1TS	POPTR_0001s00440	POPTR_0001s00440 (11)	scaffold_1:337698-337990(-) (11)	NA	P22988	L-lactate dehydrogenase A	AT4G17260.1	Lactate/malate dehydrogenase family protein 	LOC_Os02g01510.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g012480.1	L-lactate/malate dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.6445.1.A1_at	A	A1TS	POPTR_0006s09170	POPTR_0006s09170 (11)	scaffold_6:6771534-6772081(+) (11)	NA	Q8W487	"Uncharacterized protein At2g39795, mitochondrial"	AT5G02050.1	Mitochondrial glycoprotein family protein 	LOC_Os01g05010.1	"mitochondrial glycoprotein, putative, expressed"	Medtr5g088110.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
Ptp.6447.1.S1_s_at	A	A1TS	POPTR_0006s09130	POPTR_0006s09130 (11)	scaffold_6:6752589-6753091(+) (11)	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os08g13930.2	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.6448.1.S1_at	A	A1TS	POPTR_0001s09230	POPTR_0001s09230 (11)	scaffold_1:7069755-7070902(-) (11)	NA	P30711	Glutathione S-transferase theta-1	AT5G41240.1	glutathione S-transferase THETA 2 	LOC_Os11g37730.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	Medtr4g149550.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.645.1.S1_s_at	A	A1TS	POPTR_0004s21190	POPTR_0004s21190 (9)	scaffold_4:20422639-20423034(-) (9)	NA	Q9ZUX4	"Uncharacterized protein At2g27730, mitochondrial"	AT2G27730.1	copper ion binding 	LOC_Os09g39550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6450.1.S1_at	A	A1TS	POPTR_0002s12930	POPTR_0002s12930 (11)	scaffold_2:9611109-9611618(+) (11)	NA	NA	NA	AT1G47410.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages. 	NA	NA	Medtr1g024830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6452.1.S1_at	A	A1MS	POPTR_0003s10090	POPTR_0003s10090 (11)	scaffold_3:11205280-11205395(-) (11)	NA	Q6Z8C8	Cyclin-dependent kinase F-4	AT4G19110.1	Protein kinase superfamily protein 	LOC_Os06g02550.2	"CPuORF21 - conserved peptide uORF-containing transcript, expressed"	Medtr5g027190.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6453.1.A1_at	A	A1TS	POPTR_0011s00610	POPTR_0011s00610 (11)	scaffold_11:287706-288265(+) (11)	NA	Q06942	"Naringenin,2-oxoglutarate 3-dioxygenase"	AT4G16330.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g06720.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g094020.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6455.1.S1_at	A	A1TS	POPTR_0004s20750	POPTR_0004s20750 (11)	scaffold_4:20178138-20179447(+) (11)	NA	NA	NA	AT5G21070.1	unknown protein; Has 115 Blast hits to 115 proteins in 34 species: Archae - 1; Bacteria - 36; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os01g17020.1	"glycosyl hydrolases family 17 protein, putative, expressed"	Medtr5g094810.1	"Glycosyl hydrolases family 17 protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6456.1.S1_at	A	A1TS	POPTR_0014s11610	POPTR_0014s11610 (10)	scaffold_14:8609152-8610319(+) (10)	NA	P43299	Protein PROLIFERA	AT4G02060.2	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os12g37400.1	"MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed"	Medtr7g132920.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
Ptp.6458.1.S1_at	A	A1TS	POPTR_0018s06200	POPTR_0018s06200 (9)	scaffold_18:5929927-5930300(+) (9)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT3G24440.1	Fibronectin type III domain-containing protein 	LOC_Os12g34850.1	"Fibronectin type III domain containing protein, expressed"	Medtr5g075380.1	"Protein VERNALIZATION INSENSITIVE 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6459.1.S1_at	A	A1TS	POPTR_0006s05840	POPTR_0006s05840 (11)	scaffold_6:4109837-4113809(-) (11)	NA	NA	NA	AT2G42210.2	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os02g48610.2	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr7g111560.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.6460.2.A1_at	A	A1MS	POPTR_0008s11990	POPTR_0008s11990 (11)	scaffold_8:7731471-7731806(-) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6461.2.A1_at	A	A1TS	POPTR_0002s12500	POPTR_0002s12500 (11)	scaffold_2:9275246-9276027(-) (11)	NA	O95239	Chromosome-associated kinesin KIF4A	AT5G47820.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g147320.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.6462.1.S1_s_at	A	A1TS	POPTR_0002s14740	POPTR_0002s14740 (11)	scaffold_2:10943839-10945303(+) (11)	NA	P05466	"3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic"	AT2G45300.1	"RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta "	LOC_Os06g04280.1	"3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed"	Medtr4g025530.1	3-phosphoshikimate 1-carboxyvinyltransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
Ptp.6464.1.S1_s_at	A	A1TS	POPTR_0003s07470	POPTR_0003s07470 (11)	scaffold_3:9022112-9022749(-) (11)	NA	P40855	Peroxisomal biogenesis factor 19	AT3G03490.1	peroxin 19-1 	LOC_Os02g44220.1	"peroxisomal biogenesis factor 19, putative, expressed"	Medtr8g105760.1	Pex19 protein 	NA	NA	GO:0005777|peroxisome
Ptp.6466.1.S1_s_at	A	A1TS	POPTR_0007s12170	POPTR_0007s12170 (11)	scaffold_7:12482941-12485542(-) (11)	NA	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.2	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6467.1.S1_s_at	A	A1TS	POPTR_0003s14580	POPTR_0003s14580 (11)	scaffold_3:14614130-14615568(-) (11)	NA	O17606	UPF0160 protein C27H6.8	AT5G41970.1	Metal-dependent protein hydrolase 	LOC_Os02g46150.1	"GAMM1 protein-like, putative, expressed"	Medtr3g123380.1	Metal-dependent protein hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6468.1.S1_at	A	A1TS	POPTR_0014s14710	POPTR_0014s14710 (10)	scaffold_14:10788770-10789188(+) (10)	NA	Q55CX9	Probable importin-7 homolog	AT2G31660.1	ARM repeat superfamily protein 	LOC_Os04g26841.1	"importin-8, putative"	Medtr7g021300.1	Armadillo-like helical 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
Ptp.6469.1.S1_at	A	A1TS	POPTR_0002s11110	POPTR_0002s11110 (11)	scaffold_2:8139631-8140494(+) (11)	NA	Q8GY23	E3 ubiquitin-protein ligase UPL1	AT1G55860.1	ubiquitin-protein ligase 1 	LOC_Os12g24080.1	"HECT-domain domain containing protein, expressed"	Medtr5g075640.1	"HECT; Ubiquitin interacting motif; UBA-like; DUF913, E3 ubiquitin ligase TOM1; "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
Ptp.647.1.S1_at	A	A1TS	POPTR_0005s02330	POPTR_0005s02330 (11)	scaffold_5:1515479-1516353(-) (11)	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os03g22180.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6470.1.S1_at	A	A1TS	POPTR_0004s07350	POPTR_0004s07350 (10)	scaffold_4:6069605-6070117(+) (10)	NA	Q42521	Glutamate decarboxylase 1	AT5G17330.1	glutamate decarboxylase 	LOC_Os03g51080.1	"glutamate decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.6472.1.S1_s_at	A	A1TS	POPTR_0011s11320	POPTR_0011s11320 (11)	scaffold_11:14044630-14044919(+) (11)	NA	Q46948	Protein thiJ	AT1G53280.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os06g34040.1	"DJ-1 family protein, putative, expressed"	Medtr4g129930.1	ThiJ/PfpI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6473.1.S1_s_at	A	A1TS	POPTR_0004s17530	POPTR_0004s17530 (11)	scaffold_4:17692549-17693412(-) (11)	NA	Q9M4S8	"Triosephosphate isomerase, chloroplastic"	AT2G21170.1	triosephosphate isomerase 	LOC_Os09g36450.1	"triosephosphate isomerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.6473.2.S1_s_at	A	A1TS	POPTR_0004s07270	POPTR_0004s07270 (11)	scaffold_4:5989149-5989689(-) (11)	NA	Q6R0H1	Protein LHY	AT5G17300.1	Homeodomain-like superfamily protein 	LOC_Os04g49450.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6474.1.S1_at	A	A1TS	POPTR_0006s24500	POPTR_0006s24500 (10)	scaffold_6:23085636-23086182(-) (11)	NA	NA	NA	AT5G11890.1	FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g39290.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr3g139940.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
Ptp.6475.1.S1_at	A	A1TS	POPTR_1740s00200	POPTR_1740s00200 (11)	scaffold_1740:697-1225(+) (11)	NA	Q8W487	"Uncharacterized protein At2g39795, mitochondrial"	AT2G39795.1	Mitochondrial glycoprotein family protein 	LOC_Os01g05010.1	"mitochondrial glycoprotein, putative, expressed"	Medtr5g088110.1	Mitochondrial glycoprotein 	NA	NA	GO:0005759|mitochondrial matrix
Ptp.6476.3.S1_s_at	A	A1TS	POPTR_0019s15200	POPTR_0019s15200 (11)	scaffold_19:15766355-15769061(-) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT5G41700.5	ubiquitin conjugating enzyme 8 	LOC_Os06g30970.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.6477.1.A1_at	A	A1TS	POPTR_0001s38500	POPTR_0001s38500 (9)	scaffold_1:37658987-37659367(+) (10)	NA	P51281	Uncharacterized protein ycf45	AT1G73170.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g06190.1	"uncharacterized protein ycf45, putative, expressed"	AC233660_32.1	"AAA ATPase, central region AC233660.2 122587-125547 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6478.1.S1_at	A	A1TS	POPTR_0016s12670	POPTR_0016s12670 (11)	scaffold_16:12041429-12042955(+) (11)	NA	Q8H7F6	"Monothiol glutaredoxin-S16, chloroplastic"	AT2G38270.1	CAX-interacting protein 2 	LOC_Os12g07650.1	"OsGrx_S16 - glutaredoxin subgroup II, expressed"	AC233100_71.1	Glutaredoxin-related protein; Thioredoxin-like fold AC233100.6 316188-320499 F EGN_Mt090430 200	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.6481.1.S1_s_at	A	A1TS	POPTR_0014s17540	POPTR_0014s17540 (11)	scaffold_14:13786249-13786597(-) (11)	NA	NA	NA	AT3G07480.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os09g33950.1	"ferredoxin 1-like isoform 1, putative, expressed"	Medtr7g046710.1	2Fe-2S Ferredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6482.1.S1_s_at	A	A1TS	POPTR_0002s09330	POPTR_0002s09330 (11)	scaffold_2:6625823-6626124(-) (11)	NA	P78820	Acetyl-CoA carboxylase	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
Ptp.6483.1.S1_s_at	A	A1TS	POPTR_0001s12900	POPTR_0001s12900 (11)	scaffold_1:10009286-10011700(+) (11)	NA	NA	NA	AT5G64680.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g15520.1	expressed protein	Medtr8g012770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6484.1.S1_s_at	A	A1TS	POPTR_0012s00670	POPTR_0012s00670 (10)	scaffold_12:372581-372623(-) (10)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.6485.1.S1_s_at	A	A1TS	POPTR_0004s20960	POPTR_0004s20960 (11)	scaffold_4:20304069-20304566(+) (11)	NA	NA	NA	AT1G08380.1	photosystem I subunit O 	LOC_Os04g33830.1	"membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6486.1.S1_s_at	A	A1TS	POPTR_0001s31700	POPTR_0001s31700 (11)	scaffold_1:30055057-30055520(-) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.6487.1.S1_x_at	A	A1TS	POPTR_0001s04180	POPTR_0001s04180 (11)	scaffold_1:3312191-3312372(+) (11)	NA	O22349	Tubulin alpha-3 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.6488.1.S1_s_at	A	A1TS	POPTR_0005s25260	POPTR_0005s25260 (11)	scaffold_5:23569010-23569257(+) (11)	NA	Q9SH88	Ribosome biogenesis regulatory protein homolog	AT2G37990.1	ribosome biogenesis regulatory protein (RRS1) family protein 	LOC_Os04g58830.1	"ribosome biogenesis regulatory protein, putative, expressed"	Medtr2g008920.1	Ribosomal biogenesis regulatory protein 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
Ptp.6489.1.S1_s_at	A	A1TS	POPTR_0002s03450	POPTR_0002s03450 (11)	scaffold_2:2137210-2137489(-) (11)	NA	NA	NA	AT5G66440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.649.1.A1_s_at	A	A1TA	POPTR_0016s08870	POPTR_0016s08870 (11)	scaffold_16:6679421-6679702(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.649.2.A1_at	A	A1TA	POPTR_0002s22220	POPTR_0002s22220 (10)	scaffold_2:18892145-18892291(+) (10)	NA	P27518	"Chlorophyll a-b binding protein 151, chloroplastic"	AT2G05070.1	photosystem II light harvesting complex gene 2.2 	LOC_Os03g39610.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g104980.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.6490.1.S1_s_at	A	A1TS	POPTR_0017s12240	POPTR_0017s12240 (11)	scaffold_17:12472103-12472629(+) (11)	NA	P55217	"Cystathionine gamma-synthase, chloroplastic"	AT3G01120.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g25940.4	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
Ptp.6491.1.S1_s_at	A	A1TS	POPTR_0007s09430	POPTR_0007s09430 (11)	scaffold_7:8836335-8838268(-) (11)	NA	Q9CSH3	Exosome complex exonuclease RRP44	AT2G17510.1	ribonuclease II family protein 	LOC_Os03g03710.1	"ribonuclease protein, putative, expressed"	Medtr8g087680.1	"Ribonuclease II; Nucleotide binding protein, PINc "	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
Ptp.6492.1.S1_s_at	A	A1TS	POPTR_0005s05450	POPTR_0005s05450 (11)	scaffold_5:3606831-3607021(-) (11)	NA	A2Z7B3	"GDP-mannose 3,5-epimerase 1"	AT5G28840.2	"GDP-D-mannose 3',5'-epimerase "	LOC_Os10g28200.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr7g140940.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.6494.1.S1_s_at	A	A1TS	POPTR_0014s04890	POPTR_0014s04890 (11)	scaffold_14:3781949-3784567(+) (11)	POPTR_0002s13980 (6)	Q93WY4	Probable WRKY transcription factor 12	AT2G44745.1	WRKY family transcription factor 	LOC_Os04g46060.1	OsWRKY36 - Superfamily of TFs having WRKY and zinc finger domains	AC202489_11.1	DNA-binding WRKY AC202489.10 68133-74292 E EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6495.1.S1_s_at	A	A1TS	POPTR_0003s16060	POPTR_0003s16060 (10)	scaffold_3:15671701-15673043(-) (10)	NA	P51132	"Cytochrome b-c1 complex subunit Rieske-2, mitochondrial"	AT5G13430.1	Ubiquinol-cytochrome C reductase iron-sulfur subunit 	LOC_Os02g32120.1	"cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed"	Medtr7g097200.1	Ubiquinol cytochrome reductase transmembrane region; Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0008121|ubiquinol-cytochrome-c reductase activity||GO:0009055|electron carrier activity||GO:0051537|""2 iron, 2 sulfur cluster binding"""	NA
Ptp.6496.1.A1_s_at	A	A1TS	POPTR_0003s03120	POPTR_0003s03120 (11)	scaffold_3:3487638-3488013(+) (11)	NA	A8N5E5	Protein SEY1	AT1G72960.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os01g39310.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6498.1.S1_s_at	A	A1TS	POPTR_0006s23730	POPTR_0006s23730 (11)	scaffold_6:22441378-22441502(-) (11)	NA	NA	NA	AT1G02180.1	ferredoxin-related 	LOC_Os08g35710.1	expressed protein	Medtr3g139260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6499.1.S1_s_at	A	A2TS	POPTR_0006s24220	POPTR_0006s24220 (11)//POPTR_0018s07650 (11)	scaffold_18:8253653-8254081(-) (11)//scaffold_6:22887131-22887554(+) (11)	NA	Q40471	Eukaryotic initiation factor 4A-9	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os06g48750.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.65.1.S1_s_at	A	A1TS	POPTR_0002s20310	POPTR_0002s20310 (11)	scaffold_2:16295069-16295372(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.650.1.S1_at	A	A1TS	POPTR_0016s09280	POPTR_0016s09280 (11)	scaffold_16:7262025-7262449(-) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.6500.1.A1_a_at	A	A1TS	POPTR_0018s11140	POPTR_0018s11140 (11)	scaffold_18:11932293-11932522(+) (11)	NA	Q91VH1	Adiponectin receptor protein 1	AT4G30850.2	heptahelical transmembrane  protein2 	LOC_Os06g44250.1	"haemolysin-III, putative, expressed"	Medtr8g121650.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
Ptp.6502.1.S1_s_at	A	A2TS	POPTR_0007s05400	POPTR_0007s05400 (11)//POPTR_0005s07640 (9)	scaffold_5:5231862-5231975(+) (9)//scaffold_7:3491127-3491542(+) (11)	NA	O24454	Ubiquitin carboxyl-terminal hydrolase 3	AT4G39910.1	ubiquitin-specific protease 3 	LOC_Os04g37950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr3g101810.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.6503.1.S1_at	A	A1TS	POPTR_0011s16670	POPTR_0011s16670 (9)	scaffold_11:18464105-18464619(-) (9)	NA	Q6K5Q0	Putative germin-like protein 2-1	AT3G05950.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr1g028070.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
Ptp.6505.1.S1_at	A	A1TS	POPTR_0007s11600	POPTR_0007s11600 (11)	scaffold_7:11966658-11967330(+) (11)	NA	P29162	L-ascorbate oxidase homolog	AT5G66920.1	SKU5  similar 17 	LOC_Os07g02810.1	"L-ascorbate oxidase homolog precursor, putative, expressed"	Medtr5g018260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.6507.1.S1_at	A	A1TS	POPTR_0006s10790	POPTR_0006s10790 (10)	scaffold_6:8160335-8160669(+) (10)	NA	NA	NA	AT3G51730.1	saposin B domain-containing protein 	LOC_Os01g07250.1	"saposin-like type B, region 1 family protein, putative, expressed"	NA	NA	GO:0006629|lipid metabolic process	NA	NA
Ptp.6508.1.S1_at	A	A1TS	POPTR_0010s20910	POPTR_0010s20910 (11)	scaffold_10:18336711-18338915(+) (11)	NA	Q9M2S6	E3 ubiquitin-protein ligase SDIR1	AT3G55530.1	RING/U-box superfamily protein 	LOC_Os03g16570.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g084210.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6509.1.S1_at	A	A1TS	POPTR_0010s10860	POPTR_0010s10860 (11)	scaffold_10:11260933-11260972(-) (11)	NA	Q9C5U3	26S protease regulatory subunit 8 homolog A	AT5G19990.1	regulatory particle triple-A ATPase 6A 	LOC_Os02g11050.1	"26S protease regulatory subunit, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.651.1.S1_s_at	A	A1TS	POPTR_0005s27100	POPTR_0005s27100 (11)	scaffold_5:24898493-24898807(-) (11)	NA	NA	NA	AT1G76250.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 74 Blast hits to 74 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os02g02730.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6511.1.S1_s_at	A	A1TS	POPTR_0001s13790	POPTR_0001s13790 (11)	scaffold_1:10860826-10861507(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.6514.1.S1_s_at	A	A1TS	POPTR_0003s05880	POPTR_0003s05880 (11)	scaffold_3:7259387-7259693(+) (11)	NA	P10606	"Cytochrome c oxidase subunit 5B, mitochondrial"	AT1G80230.1	Rubredoxin-like superfamily protein 	LOC_Os06g05080.1	"cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed"	Medtr2g125770.1	"Cytochrome c oxidase, subunit Vb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005740|mitochondrial envelope
Ptp.6515.1.S1_at	A	A1TS	POPTR_0005s24350	POPTR_0005s24350 (11)	scaffold_5:22932992-22933245(+) (11)	NA	NA	NA	AT4G14420.1	HR-like lesion-inducing protein-related 	LOC_Os04g10240.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6516.1.S1_s_at	A	A1TS	POPTR_0022s00300	POPTR_0022s00300 (11)	scaffold_22:56630-56961(+) (11)	NA	NA	NA	AT1G57680.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g66190.2	expressed protein	Medtr2g005140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6519.1.S1_s_at	A	A2TS	POPTR_0008s09450	POPTR_0008s09450 (11)//POPTR_0010s16680 (11)	scaffold_10:15555008-15555701(-) (11)//scaffold_8:5853949-5854646(+) (11)	NA	Q9C5W6	14-3-3-like protein GF14 iota	AT1G26480.1	general regulatory factor 12 	LOC_Os02g36974.4	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.652.1.S1_s_at	A	A1TS	POPTR_0012s14440	POPTR_0012s14440 (11)	scaffold_12:14337369-14337496(+) (11)	NA	P59224	40S ribosomal protein S13-2	AT4G00100.1	ribosomal protein S13A 	LOC_Os08g02410.1	"40S ribosomal protein S13, putative, expressed"	Medtr4g025470.1	"S15/NS1, RNA-binding; Ribosomal S13S15 N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6520.1.S1_s_at	A	A1TS	POPTR_0001s28540	POPTR_0001s28540 (11)	scaffold_1:27343022-27343362(+) (11)	NA	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
Ptp.6522.1.S1_at	A	A1TS	POPTR_0009s03400	POPTR_0009s03400 (9)	scaffold_9:4030476-4032050(-) (9)	NA	NA	NA	AT3G46450.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os03g60610.3	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr4g078780.1	"Cellular retinaldehyde-binding/triple function, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6524.1.S1_s_at	A	A1TS	POPTR_0006s06180	POPTR_0006s06180 (11)	scaffold_6:4393552-4393678(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.6525.2.A1_at	A	A1TS	POPTR_0009s15130	POPTR_0009s15130 (11)	scaffold_9:11752665-11752949(+) (11)	NA	NA	NA	AT5G22640.1	MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6526.1.S1_at	A	A1TS	POPTR_0010s09790	POPTR_0010s09790 (10)	scaffold_10:10426367-10428276(-) (10)	NA	O23346	Imidazoleglycerol-phosphate dehydratase 2	AT4G14910.1	HISTIDINE BIOSYNTHESIS 5B 	LOC_Os04g52710.1	"imidazoleglycerol-phosphate dehydratase, putative, expressed"	Medtr1g083810.1	Imidazoleglycerol-phosphate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	GO:0004424|imidazoleglycerol-phosphate dehydratase activity	NA
Ptp.6528.1.S1_s_at	A	A1TS	POPTR_0018s00550	POPTR_0018s00550 (11)	scaffold_18:477309-478367(+) (11)	NA	Q5ZL00	Uncharacterized protein KIAA0090 homolog	AT5G11560.1	catalytics 	LOC_Os05g14170.1	expressed protein	AC225517_26.1	Quinonprotein alcohol dehydrogenase-like AC225517.6 112314-118182 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6529.1.S1_at	A	A1TS	POPTR_0001s09040	POPTR_0001s09040 (10)	scaffold_1:6921085-6921969(+) (10)	NA	Q54KJ8	General transcription factor IIE subunit 2	AT4G20330.1	"Transcription initiation factor TFIIE, beta subunit "	LOC_Os10g25770.2	"transcription initiation factor IIE subunit beta, putative, expressed"	Medtr5g010780.2	"transcription initiation factor-related, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005673|transcription factor TFIIE complex
Ptp.653.1.S1_s_at	A	A1TS	POPTR_0016s07400	POPTR_0016s07400 (11)	scaffold_16:5261128-5261432(-) (11)	NA	Q9SVD7	Ubiquitin-conjugating enzyme E2 variant 1D	AT3G52560.1	ubiquitin E2 variant 1D-4 	LOC_Os09g12570.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g157390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6530.1.S1_s_at	A	A1TS	POPTR_0002s13570	POPTR_0002s13570 (11)	scaffold_2:10066379-10066560(-) (11)	NA	O04905	Uridylate kinase	AT5G26667.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53790.1	"adenylate kinase, putative, expressed"	Medtr8g009290.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	"GO:0019205|""nucleobase, nucleoside, nucleotide kinase activity""||GO:0005524|ATP binding"	NA
Ptp.6531.1.S1_s_at	A	A1TS	POPTR_0009s16530	POPTR_0009s16530 (10)	scaffold_9:12527488-12528379(-) (10)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G27500.2	Glycosyl hydrolase superfamily protein 	LOC_Os04g33640.2	"glycosyl hydrolases family 17, putative, expressed"	Medtr2g107740.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6533.1.S1_at	A	A1TA	POPTR_0008s06590	POPTR_0008s06590 (11)	scaffold_8:3929310-3929382(-) (11)	NA	Q9Y169	Exostosin-2	AT3G55830.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g49150.1	"exostosin, putative, expressed"	Medtr5g089480.1	"EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
Ptp.6535.1.S1_at	A	A1TS	POPTR_0009s16900	POPTR_0009s16900 (11)	scaffold_9:12758609-12759048(-) (11)	NA	NA	NA	AT2G17230.1	EXORDIUM like 5 	LOC_Os06g04250.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6537.1.A1_s_at	A	A1TS	POPTR_0010s04230	POPTR_0010s04230 (11)	scaffold_10:5150052-5150497(+) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT3G06035.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6538.1.S1_s_at	A	A1TS	POPTR_0001s07730	POPTR_0001s07730 (11)	scaffold_1:5851179-5852684(-) (11)	NA	A7YVD7	"UPF0551 protein C8orf38 homolog, mitochondrial"	AT1G62730.1	Terpenoid synthases superfamily protein 	LOC_Os06g01470.1	"AGAP000326-PA, putative, expressed"	Medtr5g012220.1	"UPF0551 protein C8orf38 homolog, related "	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
Ptp.6539.1.S1_at	A	A1TS	POPTR_0010s12090	POPTR_0010s12090 (11)	scaffold_10:12179368-12179641(-) (11)	NA	NA	NA	AT1G70780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G23150.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g21925.1	expressed protein	Medtr1g034970.1	"Senescence-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.654.1.S1_s_at	A	A1TS	POPTR_0007s14540	POPTR_0007s14540 (9)	scaffold_7:14297483-14300365(+) (10)	NA	NA	NA	AT4G37830.1	cytochrome c oxidase-related 	LOC_Os03g56190.1	"cytochrome c oxidase-related, putative, expressed"	Medtr8g102230.1	"Cytochrome c oxidase, subunit VIa "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005751|mitochondrial respiratory chain complex IV
Ptp.6541.1.S1_a_at	A	A1TS	POPTR_0001s34010	POPTR_0001s34010 (11)	scaffold_1:32161012-32161403(+) (11)	NA	Q9SE42	"Ribulose-phosphate 3-epimerase, cytoplasmic isoform"	AT3G01850.2	Aldolase-type TIM barrel family protein 	LOC_Os09g32810.1	"ribulose-phosphate 3-epimerase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0004750|ribulose-phosphate 3-epimerase activity	NA
Ptp.6542.1.S1_at	A	A1TS	POPTR_0006s11840	POPTR_0006s11840 (9)	scaffold_6:9034674-9034889(+) (9)	NA	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400	AT2G36570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g04230.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g073620.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.6543.1.S1_at	A	A1TS	POPTR_0010s01650	POPTR_0010s01650 (11)	scaffold_10:1838584-1840079(-) (11)	NA	Q42384	Protein pleiotropic regulatory locus 1	AT4G15900.1	pleiotropic regulatory locus 1 	LOC_Os03g21990.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g024610.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6543.1.S1_s_at	A	A1TS	POPTR_0010s01650	POPTR_0010s01650 (11)	scaffold_10:1838440-1840089(-) (11)	NA	Q42384	Protein pleiotropic regulatory locus 1	AT4G15900.1	pleiotropic regulatory locus 1 	LOC_Os03g21990.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g024610.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6546.1.S1_s_at	A	A1TS	POPTR_0012s07170	POPTR_0012s07170 (11)	scaffold_12:7945500-7945538(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT1G74690.1	IQ-domain 31 	LOC_Os05g45930.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g112590.2	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6547.1.S1_s_at	A	A1TS	POPTR_0006s11450	POPTR_0006s11450 (11)	scaffold_6:8680478-8681013(+) (11)	NA	Q9SSC7	Protein LURP-one-related 5	AT1G80120.1	Protein of unknown function (DUF567) 	LOC_Os12g02760.1	"DUF567 domain containing protein, putative, expressed"	Medtr2g126530.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6549.1.S1_at	A	A1TS	POPTR_0007s12440	POPTR_0007s12440 (11)	scaffold_7:12742510-12742606(-) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.6549.1.S1_s_at	A	A1TS	POPTR_0007s12440	POPTR_0007s12440 (11)	scaffold_7:12742207-12742471(-) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.655.1.S1_at	A	A1TS	POPTR_0017s04450	POPTR_0017s04450 (10)	scaffold_17:3424760-3425145(-) (10)	NA	P25083	"ADP,ATP carrier protein, mitochondrial"	AT4G28390.1	ADP/ATP carrier 3 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6550.1.S1_s_at	A	A1TS	POPTR_0002s11400	POPTR_0002s11400 (11)	scaffold_2:8434245-8434326(+) (11)	NA	O04135	Homeobox protein knotted-1-like 2	AT4G08150.1	KNOTTED-like from Arabidopsis thaliana 	LOC_Os07g03770.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.6552.1.S1_at	A	A1TS	POPTR_0007s15420	POPTR_0007s15420 (10)	scaffold_7:14960531-14960565(+) (10)	NA	Q9LHE5	Mitochondrial import receptor subunit TOM40 homolog 1	AT3G20000.1	translocase of the outer mitochondrial membrane 40 	LOC_Os03g20750.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr4g156410.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.6552.2.S1_s_at	A	A1TS	POPTR_0007s15420	POPTR_0007s15420 (11)	scaffold_7:14955963-14957522(+) (11)	NA	Q9LHE5	Mitochondrial import receptor subunit TOM40 homolog 1	AT3G20000.1	translocase of the outer mitochondrial membrane 40 	LOC_Os03g20750.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr4g156410.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.6553.1.S1_at	A	A1TA	POPTR_0006s26110	POPTR_0006s26110 (10)	scaffold_6:24387497-24388050(-) (10)	NA	Q9FJ30	Putative F-box/LRR-repeat protein At5g41840	AT5G41840.1	F-box/RNI-like superfamily protein 	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6553.2.A1_at	A	A1TS	POPTR_0006s26110	POPTR_0006s26110 (11)	scaffold_6:24388384-24388882(+) (11)	NA	Q9FJ30	Putative F-box/LRR-repeat protein At5g41840	AT5G41840.1	F-box/RNI-like superfamily protein 	NA	NA	Medtr2g121880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6554.1.S1_at	A	A1TS	POPTR_0014s02380	POPTR_0014s02380 (11)	scaffold_14:1994054-1995317(-) (11)	NA	Q9LTI3	Mannose-P-dolichol utilization defect 1 protein homolog	AT4G07390.1	Mannose-P-dolichol utilization defect 1 protein 	LOC_Os07g29610.1	"PQ loop repeat domain containing protein, expressed"	Medtr1g023860.1	Cystinosin/ERS1p repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6555.1.A1_at	A	A1TS	POPTR_0018s06840	POPTR_0018s06840 (11)	scaffold_18:6889847-6891497(-) (11)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6556.1.S1_s_at	A	A1TS	POPTR_0005s25990	POPTR_0005s25990 (11)	scaffold_5:24153641-24153911(+) (11)	NA	Q84WL9	AP-2 complex subunit sigma	AT1G47830.1	SNARE-like superfamily protein 	LOC_Os12g10560.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr1g031130.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.6557.1.A1_s_at	A	A1TS	POPTR_0008s02740	POPTR_0008s02740 (11)	scaffold_8:1396434-1398348(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.656.1.S1_a_at	A	A1TS	POPTR_0016s13310	POPTR_0016s13310 (11)	scaffold_16:12503021-12503537(-) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT3G08890.2	"Protein of unknown function, DUF538 "	LOC_Os05g27950.1	"DUF538 domain containing protein, putative, expressed"	Medtr7g076080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.656.2.A1_at	A	A1TS	POPTR_0016s13310	POPTR_0016s13310 (11)	scaffold_16:12502858-12503205(-) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT3G08890.2	"Protein of unknown function, DUF538 "	LOC_Os05g27950.1	"DUF538 domain containing protein, putative, expressed"	Medtr7g076080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6560.1.S1_at	A	A1TS	POPTR_0011s05430	POPTR_0011s05430 (10)	scaffold_11:5372139-5372473(+) (10)	NA	Q93Z00	Transcription factor TCP14	AT3G47620.1	"TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 "	LOC_Os02g51280.1	"TCP-domain protein, putative, expressed"	Medtr8g112560.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6561.1.S1_at	A	A1TS	POPTR_0016s12660	POPTR_0016s12660 (10)	scaffold_16:12034660-12035144(-) (10)	NA	NA	NA	AT5G01360.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18120.1	"proteins of unknown function domain containing protein, expressed"	AC233100_70.1	"Protein of unknown function DUF231, plant AC233100.6 313231-310151 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6564.1.S1_at	A	A1TS	POPTR_0001s06550	POPTR_0001s06550 (10)	scaffold_1:5037612-5039199(+) (10)	NA	NA	NA	AT5G13500.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g32060.1	expressed protein	Medtr8g042980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6565.1.S1_s_at	A	A1TS	POPTR_0001s41410	POPTR_0001s41410 (11)	scaffold_1:41024859-41025243(-) (11)	NA	NA	NA	AT3G15480.1	Protein of unknown function (DUF1218) 	LOC_Os07g27810.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6566.1.S1_s_at	A	A1TS	POPTR_0001s18040	POPTR_0001s18040 (11)	scaffold_1:15017007-15017479(-) (11)	NA	Q94738	97 kDa heat shock protein	AT1G79920.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os01g08560.2	"DnaK family protein, putative, expressed"	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6567.1.S1_s_at	A	A1TS	POPTR_0005s24130	POPTR_0005s24130 (11)	scaffold_5:22767443-22768006(+) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.6568.1.S1_at	A	A1TS	POPTR_0001s00250	POPTR_0001s00250 (11)	scaffold_1:112915-113519(-) (11)	NA	Q9SU40	Monocopper oxidase-like protein SKU5	AT4G12420.2	Cupredoxin superfamily protein 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.6569.1.S1_at	A	A1TS	POPTR_0006s00900	POPTR_0006s00900 (11)	scaffold_6:508234-508758(-) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21790.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g097770.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.657.1.S1_at	A	A1TS	POPTR_0002s09950	POPTR_0002s09950 (10)	scaffold_2:7138984-7140910(+) (11)	NA	P27608	"Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic"	AT1G22410.1	Class-II DAHP synthetase family protein 	LOC_Os07g42960.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003849|3-deoxy-7-phosphoheptulonate synthase activity	NA
Ptp.6574.1.S1_s_at	A	A1TS	POPTR_0018s07500	POPTR_0018s07500 (11)	scaffold_18:7813198-7813420(-) (11)	NA	Q54DU5	von Willebrand factor A domain-containing protein DDB_G0292028	AT1G19110.1	inter-alpha-trypsin inhibitor heavy chain-related 	LOC_Os07g42280.1	"von Willebrand factor type A domain containing protein, expressed"	Medtr2g049710.1	"von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6576.1.S1_at	A	A1TS	POPTR_0012s09540	POPTR_0012s09540 (10)	scaffold_12:10524954-10526265(-) (10)	NA	Q01402	"Nucleoside diphosphate kinase 2, chloroplastic"	AT5G63310.1	nucleoside diphosphate kinase 2 	LOC_Os12g36194.1	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
Ptp.6579.1.A1_a_at	A	A1TA	POPTR_0006s13840	POPTR_0006s13840 (10)	scaffold_6:11028551-11028784(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6580.1.S1_a_at	A	A1TS	POPTR_0006s20260	POPTR_0006s20260 (11)	scaffold_6:19314752-19315069(+) (11)	NA	Q13231	Chitotriosidase-1	AT4G19810.1	Glycosyl hydrolase family protein with chitinase insertion domain 	LOC_Os11g27400.1	"glycosyl hydrolase, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.6581.1.S1_s_at	A	A1TS	POPTR_0005s16600	POPTR_0005s16600 (11)	scaffold_5:13550698-13550958(+) (11)	NA	P33050	Pollen-specific protein C13	AT4G08685.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g22590.1	"POEI24 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	CU651566_3.1	Pollen Ole e 1 allergen and extensin CU651566.9 19800-21791 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6582.2.S1_at	A	A1TS	POPTR_0003s06260	POPTR_0003s06260 (10)	scaffold_3:7727981-7728029(+) (10)	NA	NA	NA	AT1G72640.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g29730.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6583.1.S1_x_at	A	A1TS	POPTR_0008s02430	POPTR_0008s02430 (10)	scaffold_8:1181368-1182978(+) (10)	NA	NA	NA	AT1G66240.1	homolog of anti-oxidant 1 	LOC_Os08g10480.1	heavy metal-associated domain containing protein	Medtr1g117110.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.6585.1.S1_s_at	A	A1TS	POPTR_0018s04600	POPTR_0018s04600 (11)	scaffold_18:3871816-3874768(-) (11)	NA	P0A9H7	Cyclopropane-fatty-acyl-phospholipid synthase	AT4G33110.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g37610.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr3g139610.2	Methyltransferase type 11 	GO:0008610|lipid biosynthetic process	GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
Ptp.6586.1.S1_at	A	A1TS	POPTR_1182s00200	POPTR_1182s00200 (10)	scaffold_1182:6103-6445(+) (10)//scaffold_2:8551757-8552099(-) (10)	NA	Q3USY0	Putative sodium-coupled neutral amino acid transporter 11	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6587.1.S1_at	A	A1TS	POPTR_0006s28140	POPTR_0006s28140 (9)	scaffold_6:25942957-25944813(+) (9)	NA	Q96319	Enhancer of rudimentary homolog	AT5G10810.1	"enhancer of rudimentary protein, putative "	LOC_Os02g39830.1	"enhancer of rudimentary protein, putative, expressed"	Medtr1g017030.1	Enhancer of rudimentary 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.659.1.S1_s_at	A	A1TS	POPTR_0006s02640	POPTR_0006s02640 (11)	scaffold_6:1684589-1685660(-) (11)	NA	Q9LTV6	"Peroxisomal 2,4-dienoyl-CoA reductase"	AT3G12800.1	short-chain dehydrogenase-reductase B 	LOC_Os04g52400.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr8g146300.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.6590.1.S1_at	A	A1TS	POPTR_0002s22900	POPTR_0002s22900 (11)	scaffold_2:20007214-20007646(+) (11)	NA	NA	NA	AT3G63030.1	methyl-CPG-binding domain 4 	LOC_Os05g33550.1	"methyl-binding domain protein MBD, putative, expressed"	Medtr1g111540.1	"Thymidine kinase; Methyl-CpG binding; Zinc finger, CW-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.6592.1.A1_s_at	A	A5TS	POPTR_0010s09000	POPTR_0010s09000 (11)//POPTR_0010s09040 (11)//POPTR_0010s09020 (11)//POPTR_0010s09060 (10)//POPTR_0010s09050 (10)	scaffold_10:9787277-9787570(+) (11)//scaffold_10:9810411-9810704(+) (11)//scaffold_10:9845624-9845917(+) (11)//scaffold_10:9871918-9872211(+) (10)//scaffold_10:9904795-9905088(+) (10)	NA	O48780	3-ketoacyl-CoA synthase 11	AT2G26640.1	3-ketoacyl-CoA synthase 11 	LOC_Os06g39750.3	"3-ketoacyl-CoA synthase, putative, expressed"	AC233668_12.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase AC233668.2 25806-29562 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.6593.1.S1_x_at	A	A1TS	POPTR_0015s10330	POPTR_0015s10330 (11)	scaffold_15:11291256-11292128(+) (11)	NA	P25861	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G13440.1	glyceraldehyde-3-phosphate dehydrogenase C2 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.6593.2.S1_s_at	A	A1TS	POPTR_0012s09570	POPTR_0012s09570 (11)	scaffold_12:10559604-10560143(+) (11)	NA	P26518	"Glyceraldehyde-3-phosphate dehydrogenase, cytosolic"	AT1G13440.1	glyceraldehyde-3-phosphate dehydrogenase C2 	LOC_Os04g40950.1	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr3g103260.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.6596.1.S1_at	A	A1TS	POPTR_0006s15040	POPTR_0006s15040 (10)	scaffold_6:12512995-12513611(+) (10)	NA	P93002	Regulatory protein NPR1	AT1G64280.1	regulatory protein (NPR1) 	LOC_Os01g09800.1	"BTBA1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g046480.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
Ptp.6598.1.S1_at	A	A1TS	POPTR_0006s14370	POPTR_0006s14370 (11)	scaffold_6:11728788-11728946(+) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6598.1.S1_s_at	A	A1TS	POPTR_0018s05370	POPTR_0018s05370 (10)	scaffold_18:4919067-4919260(+) (10)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6599.1.S1_s_at	A	A1TS	POPTR_0005s16270	POPTR_0005s16270 (11)	scaffold_5:12982657-12983163(+) (11)	NA	Q6GQJ2	Protein Jade-1	AT1G77800.1	PHD finger family protein 	LOC_Os02g52960.1	"PHD-finger domain containing protein, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.66.1.S1_at	A	A1TS	POPTR_0005s06640	POPTR_0005s06640 (9)	scaffold_5:4453563-4453924(+) (9)	NA	Q8L7V3	Probable methyltransferase PMT26	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.660.1.S1_at	A	A1TS	POPTR_0005s18540	POPTR_0005s18540 (11)	scaffold_5:16779071-16779593(-) (11)	NA	Q9FE83	F-box protein SKIP2	AT5G67250.1	SKP1/ASK1-interacting protein 2 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6604.1.S1_at	A	A1TS	POPTR_0008s05660	POPTR_0008s05660 (11)	scaffold_8:3290881-3291394(+) (11)	NA	Q2JRQ8	Ribosomal RNA large subunit methyltransferase N	AT2G39670.1	Radical SAM superfamily protein 	LOC_Os01g74190.1	"radical SAM enzyme, putative, expressed"	Medtr5g087280.1	Conserved hypothetical protein 48; Radical SAM 	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
Ptp.6605.1.S1_s_at	A	A2TS	POPTR_0004s13640	POPTR_0011s02750 (11)//POPTR_0004s13640 (11)	scaffold_11:2685691-2686326(+) (11)//scaffold_4:13995969-13996601(+) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6608.1.S1_s_at	A	A1TS	POPTR_0008s20530	POPTR_0008s20530 (10)	scaffold_8:14275422-14275901(-) (10)	NA	Q8W4J2	Mitogen-activated protein kinase 16	AT5G19010.1	mitogen-activated protein kinase 16 	LOC_Os05g05160.1	"CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g026470.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.661.2.S1_at	A	A1TS	POPTR_0005s27730	POPTR_0005s27730 (11)	scaffold_5:25254579-25254643(+) (11)	NA	Q9LM66	Xylem cysteine proteinase 2	AT1G20850.1	xylem cysteine peptidase 2 	LOC_Os01g73980.1	"xylem cysteine proteinase 2 precursor, putative, expressed"	Medtr3g159890.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.661.3.S1_a_at	A	A1TS	POPTR_0002s00720	POPTR_0002s00720 (11)	scaffold_2:317994-318805(-) (11)	NA	Q9LM66	Xylem cysteine proteinase 2	AT1G20850.1	xylem cysteine peptidase 2 	LOC_Os01g73980.1	"xylem cysteine proteinase 2 precursor, putative, expressed"	Medtr3g159890.1	"Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.6612.1.S1_at	A	A1TS	POPTR_0007s14720	POPTR_0007s14720 (11)	scaffold_7:14486822-14487334(+) (11)	NA	NA	NA	AT2G22840.1	growth-regulating factor 1 	LOC_Os03g51970.1	"growth-regulating factor, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
Ptp.6613.1.S1_at	A	A1TS	POPTR_0005s02020	POPTR_0005s02020 (10)	scaffold_5:1315855-1317144(+) (10)	NA	Q6P642	DnaJ homolog subfamily B member 6	AT1G56300.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g18870.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g138160.1	"Glycoside hydrolase, family 11; Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.6616.1.S1_a_at	A	A1TS	POPTR_0001s37430	POPTR_0001s37430 (11)	scaffold_1:36429940-36429986(-) (11)	NA	Q9M4Y3	"30S ribosomal protein S10, chloroplastic"	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6616.1.S1_at	A	A1TS	POPTR_0001s37430	POPTR_0001s37430 (11)	scaffold_1:36427913-36428883(-) (11)	NA	Q9M4Y3	"30S ribosomal protein S10, chloroplastic"	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6617.1.S1_s_at	A	A1TS	POPTR_0007s15080	POPTR_0007s15080 (11)	scaffold_7:14723235-14723910(-) (11)	NA	NA	NA	AT1G16720.1	high chlorophyll fluorescence phenotype 173 	LOC_Os06g49120.1	"Complex I intermediate-associated protein 30 domain containing protein, putative, expressed"	Medtr4g163250.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6618.1.S1_s_at	A	A1TS	POPTR_0003s13440	POPTR_0003s13440 (11)	scaffold_3:13823147-13823293(-) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6619.1.S1_s_at	A	A1TS	POPTR_0010s00900	POPTR_0010s00900 (11)	scaffold_10:612108-612368(-) (11)	NA	P42736	Ethylene-responsive transcription factor RAP2-3	AT3G16770.1	ethylene-responsive element binding protein 	LOC_Os09g26420.4	"AP2 domain containing protein, expressed"	Medtr1g107940.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.662.1.S1_s_at	A	A1TS	POPTR_0004s05080	POPTR_0004s05080 (11)	scaffold_4:3809484-3809638(+) (11)	NA	NA	NA	AT5G28010.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	NA	NA	Medtr8g012990.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.6621.1.S1_at	A	A1TS	POPTR_0014s11760	POPTR_0014s11760 (11)	scaffold_14:8732285-8733393(+) (11)	NA	Q5R9W6	Transcription initiation factor TFIID subunit 13	AT1G02680.1	TBP-associated factor 13 	LOC_Os01g23630.1	"transcription initiation factor IID, 18kD subunit family protein, expressed"	Medtr1g107340.1	Histone-fold 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006366|transcription from RNA polymerase II promoter	GO:0003702|RNA polymerase II transcription factor activity	NA
Ptp.6623.1.S1_at	A	A1TS	POPTR_0015s04430	POPTR_0015s04430 (11)	scaffold_15:4577265-4578138(+) (11)	NA	NA	NA	AT1G18180.1	Protein of unknown function (DUF1295) 	LOC_Os03g50070.1	"DUF1295 domain containing protein, putative, expressed"	Medtr4g155170.1	Protein of unknown function DUF1295 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6624.1.S1_at	A	A1TS	POPTR_0001s25490	POPTR_0001s25490 (9)	scaffold_1:24591024-24591642(-) (9)	NA	O82797	Proliferating cell nuclear antigen	AT2G29570.1	proliferating cell nuclear antigen 2 	LOC_Os02g56130.1	"PCNA - Putative DNA replicative polymerase clamp, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006275|regulation of DNA replication	GO:0003677|DNA binding||GO:0030337|DNA polymerase processivity factor activity	GO:0043626|PCNA complex
Ptp.6627.1.S1_at	A	A1TS	POPTR_0001s44110	POPTR_0001s44110 (11)	scaffold_1:44584349-44585214(+) (11)	NA	Q02764	"50S ribosomal protein L24, chloroplastic"	AT5G54600.1	Translation protein SH3-like family protein 	LOC_Os06g46930.1	"ribosomal protein L24, putative, expressed"	Medtr2g096410.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6628.1.S1_at	A	A1TS	POPTR_0009s15490	POPTR_0009s15490 (11)	scaffold_9:11968313-11969281(+) (11)	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.6629.1.S1_at	A	A1TS	POPTR_0009s14950	POPTR_0009s14950 (10)	scaffold_9:11608566-11609717(-) (10)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os11g37070.1	expressed protein	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.663.1.S1_x_at	A	A2TS	POPTR_0013s00690	POPTR_0013s00700 (9)//POPTR_0013s00690 (9)	scaffold_13:337604-342556(+) (11)	NA	O48920	ADP-ribosylation factor	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.663.2.S1_x_at	A	A1TS	POPTR_0014s11180	POPTR_0014s11180 (9)	scaffold_14:8316217-8316576(+) (9)	NA	P51823	ADP-ribosylation factor 2	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os05g41060.1	"ADP-ribosylation factor, putative, expressed"	Medtr1g106180.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6631.1.S1_s_at	A	A1TS	POPTR_0006s11060	POPTR_0006s11060 (11)	scaffold_6:8385347-8386145(-) (11)	NA	P85801	Thioredoxin H-type	AT3G08710.2	thioredoxin H-type 9 	LOC_Os01g07376.1	"thioredoxin, putative, expressed"	Medtr8g116230.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.6632.1.S1_at	A	A1TS	POPTR_0019s15110	POPTR_0019s15110 (11)	scaffold_19:15707938-15708263(-) (11)	NA	O24312	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6633.1.S1_at	A	A1TS	POPTR_0018s06830	POPTR_0018s06830 (11)	scaffold_18:6877409-6880315(+) (11)	NA	NA	NA	AT3G47650.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os06g22690.1	"bundle sheath defective protein 2, putative, expressed"	Medtr8g120270.1	"Chaperon P13.9, putative "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.6636.1.A1_s_at	A	A1TS	POPTR_0013s14330	POPTR_0013s14330 (11)	scaffold_13:14562354-14563079(+) (11)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G28220.1	NAD(P)H dehydrogenase B1 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.6636.2.S1_at	A	A1TS	POPTR_0013s14330	POPTR_0013s14330 (11)	scaffold_13:14560626-14562242(+) (11)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G28220.1	NAD(P)H dehydrogenase B1 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.6638.1.S1_s_at	A	A1TA	POPTR_0001s18460	POPTR_0001s18460 (11)	scaffold_1:15517101-15517351(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.664.2.A1_a_at	A	A1TS	POPTR_0009s04960	POPTR_0009s04960 (9)	scaffold_9:5186270-5186355(+) (9)	NA	O81643	Villin-1	AT2G29890.1	villin-like 1 	LOC_Os06g44890.1	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.6640.1.S1_at	A	A1TS	POPTR_0001s28100	POPTR_0001s28100 (11)	scaffold_1:26883675-26884307(-) (11)	NA	NA	NA	AT5G12240.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages. 	LOC_Os07g44744.1	expressed protein	Medtr5g096100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6641.1.S1_s_at	A	A1TS	POPTR_0018s02630	POPTR_0018s02630 (11)	scaffold_18:2378937-2379520(+) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT2G25060.1	early nodulin-like protein 14 	LOC_Os02g06670.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g138410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.6643.1.S1_at	A	A1TS	POPTR_0008s13070	POPTR_0008s13070 (11)	scaffold_8:8522071-8522570(-) (11)	NA	Q9FVJ3	ADP-ribosylation factor GTPase-activating protein AGD12	AT1G70790.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g22130.1	expressed protein	Medtr1g034940.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6646.1.S1_a_at	A	A1MS	POPTR_0011s13890	POPTR_0011s13890 (11)	scaffold_11:16504435-16504791(+) (11)	NA	Q9C6I6	"Electron transfer flavoprotein subunit alpha, mitochondrial"	AT1G50940.1	electron transfer flavoprotein alpha 	LOC_Os03g61920.1	"electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g110780.1	"Electron transfer flavoprotein, alpha subunit; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6646.2.A1_at	A	A1MS	POPTR_0011s13890	POPTR_0011s13890 (11)	scaffold_11:16504272-16504699(+) (11)	NA	Q9C6I6	"Electron transfer flavoprotein subunit alpha, mitochondrial"	AT1G50940.1	electron transfer flavoprotein alpha 	LOC_Os03g61920.1	"electron transfer flavoprotein subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g110780.1	"Electron transfer flavoprotein, alpha subunit; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6646.3.S1_at	A	A1TS	POPTR_0001s09830	POPTR_0001s09830 (9)	scaffold_1:7581544-7582606(+) (9)	NA	P92947	"Monodehydroascorbate reductase, chloroplastic"	AT1G63940.2	monodehydroascorbate reductase 6 	LOC_Os08g05570.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.665.1.S1_at	A	A1TS	POPTR_0018s08290	POPTR_0018s08290 (11)	scaffold_18:9184201-9185162(-) (11)	NA	P40343	Vacuolar protein sorting-associated protein 27	AT2G26210.1	Ankyrin repeat family protein 	LOC_Os07g42640.1	"FYVE zinc finger family protein, expressed"	Medtr8g133500.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6652.1.A1_s_at	A	A1TS	POPTR_0001s16790	POPTR_0001s16790 (11)	scaffold_1:13588982-13589341(+) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.6653.1.S1_at	A	A2TS	POPTR_0005s04250	POPTR_0005s04250 (11)//POPTR_0369s00200 (11)	scaffold_369:6012-6543(+) (11)//scaffold_5:2863235-2863765(+) (11)	NA	O65759	Histone H2AX	AT1G54690.1	gamma histone variant H2AX 	LOC_Os12g34510.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr7g130040.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.6656.1.S1_s_at	A	A1TS	POPTR_0008s08790	POPTR_0008s08790 (9)	scaffold_8:5446599-5447672(-) (9)	NA	Q9C554	Expansin-A1	AT1G69530.2	expansin A1 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6657.1.S1_at	A	A1TS	POPTR_0001s38630	POPTR_0001s38630 (11)	scaffold_1:37813522-37813640(+) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT5G59180.1	DNA-directed RNA polymerase II 	LOC_Os05g33240.1	"DNA-directed RNA polymerase II subunit RPB7, putative, expressed"	Medtr4g165790.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003723|RNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.6659.2.S1_a_at	A	A1TS	POPTR_0013s01680	POPTR_0013s01680 (11)	scaffold_13:951427-952805(-) (11)	NA	Q9M9W1	60S ribosomal protein L22-2	AT3G05560.3	Ribosomal L22e protein family 	LOC_Os07g47710.1	"60S ribosomal protein L22-2, putative, expressed"	Medtr1g108350.1	Ribosomal L22e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.666.1.S1_at	A	A1TS	POPTR_0002s25970	POPTR_0002s25970 (11)	scaffold_2:22961789-22962100(+) (11)	NA	Q84JA6	Cellulose synthase A catalytic subunit 4 [UDP-forming]	AT5G44030.1	cellulose synthase A4 	LOC_Os10g32980.1	"CESA7 - cellulose synthase, expressed"	Medtr4g089800.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.6660.1.S1_at	A	A1TS	POPTR_0018s11170	POPTR_0018s11170 (11)	scaffold_18:11964382-11967333(+) (11)	NA	P23326	"50S ribosomal protein L35, chloroplastic"	AT2G24090.1	Ribosomal protein L35 	LOC_Os06g43900.1	"ribosomal protein L35, putative, expressed"	Medtr8g144750.1	Ribosomal protein L35 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6661.1.S1_s_at	A	A1TS	POPTR_0015s04320	POPTR_0015s04320 (11)	scaffold_15:4407839-4409241(-) (11)	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT3G18050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g37156.1	expressed protein	Medtr4g155370.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6662.1.S1_at	A	A1TS	POPTR_0012s03140	POPTR_0012s03140 (11)	scaffold_12:2499202-2499292(-) (11)	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6662.1.S1_x_at	A	A1TS	POPTR_0012s03140	POPTR_0012s03140 (11)	scaffold_12:2499096-2499956(-) (11)	NA	P51423	Ubiquitin-60S ribosomal protein L40	AT3G52590.1	ubiquitin extension protein 1 	LOC_Os09g39500.1	"ubiquitin fusion protein, putative, expressed"	Medtr3g123290.1	Ubiquitin; Ribosomal protein L40e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6663.1.S1_a_at	A	A1TS	POPTR_0018s04770	POPTR_0018s04770 (11)	scaffold_18:4137867-4137920(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g121920.2	"Glu-tRNAGln amidotransferase, C subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6664.1.S1_at	A	A1TS	POPTR_0014s12370	POPTR_0014s12370 (11)	scaffold_14:9129965-9132107(+) (11)	NA	Q9VI10	Probable small nuclear ribonucleoprotein Sm D2	AT3G62840.2	Small nuclear ribonucleoprotein family protein 	LOC_Os05g24970.2	"LSM domain containing protein, expressed"	Medtr4g156540.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6665.1.S1_at	A	A1TS	POPTR_0010s15460	POPTR_0010s15460 (9)	scaffold_10:14692800-14693037(+) (9)	POPTR_0010s15470 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6666.1.S1_at	A	A1MS	POPTR_0008s23250	POPTR_0008s23250 (10)	scaffold_8:18577253-18577745(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6667.1.S1_s_at	A	A2TS	POPTR_0001s40480	POPTR_0001s40480 (11)//POPTR_0011s11390 (11)	scaffold_1:39924546-39924806(-) (11)//scaffold_11:14143604-14143863(-) (11)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14420.2	Aldolase-type TIM barrel family protein 	LOC_Os03g57220.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.6668.1.S1_at	A	A1TS	POPTR_0014s16670	POPTR_0014s16670 (11)	scaffold_14:12768089-12768327(+) (11)	NA	Q8S4Y1	"Acetyl-CoA acetyltransferase, cytosolic 1"	AT5G48230.2	acetoacetyl-CoA thiolase 2 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	Medtr5g106000.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6669.1.S1_at	A	A2TS	POPTR_0006s18360	POPTR_0006s18360 (10)//POPTR_0168s00200 (10)	scaffold_168:1283-1419(-) (10)//scaffold_6:16760957-16761093(+) (10)	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.667.1.S1_at	A	A1TS	POPTR_0014s07570	POPTR_0014s07570 (10)	scaffold_14:5690927-5691035(+) (10)	NA	P37225	"NAD-dependent malic enzyme 59 kDa isoform, mitochondrial"	AT4G00570.1	NAD-dependent malic enzyme 2 	LOC_Os10g35960.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g034840.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.6670.1.S1_at	A	A1TS	POPTR_0019s09460	POPTR_0019s09460 (11)	scaffold_19:11000920-11002833(+) (11)	NA	Q5Q995	Protein KRTCAP2 homolog	AT1G77350.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g40780.1	"keratinocytes-associated protein 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6670.1.S1_s_at	A	A1TS	POPTR_0019s09460	POPTR_0019s09460 (11)	scaffold_19:11000693-11002982(+) (11)	NA	Q5Q995	Protein KRTCAP2 homolog	AT1G77350.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function KRTCAP2 (InterPro:IPR018614); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g40780.1	"keratinocytes-associated protein 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6671.1.S1_at	A	A1TS	POPTR_0001s38770	POPTR_0001s38770 (9)	scaffold_1:38035252-38035529(-) (9)	NA	Q797A7	Uncharacterized amino acid permease YfnA	AT1G17120.1	cationic amino acid transporter 8 	LOC_Os01g11160.1	"amino acid permease family protein, putative, expressed"	Medtr4g137890.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
Ptp.6672.1.S1_s_at	A	A2TS	POPTR_0002s04720	POPTR_0005s23810 (9)//POPTR_0002s04720 (9)	scaffold_2:2968973-2969055(+) (9)//scaffold_5:22543817-22543899(-) (9)	NA	O23628	Histone H2A variant 1	AT3G54560.1	histone H2A 11 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g083350.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.6673.1.S1_at	A	A1TS	POPTR_0012s11050	POPTR_0012s11050 (9)	scaffold_12:11666167-11667759(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr6g094220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6676.1.S1_s_at	A	A2TS	POPTR_0002s01080	POPTR_0005s27300 (11)//POPTR_0002s01080 (11)	scaffold_2:569107-569991(-) (11)//scaffold_5:25008805-25009512(+) (11)	NA	P17598	Catalase isozyme 1	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
Ptp.6677.3.S1_a_at	A	A1MS	POPTR_0016s13820	POPTR_0016s13820 (10)	scaffold_16:12966267-12966378(-) (10)	NA	Q9LZX1	Protein LURP-one-related 15	AT5G01750.1	Protein of unknown function (DUF567) 	LOC_Os07g12730.1	"DUF567 domain containing protein, putative, expressed"	Medtr7g077600.1	Protein of unknown function DUF567 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6679.1.A1_at	A	A1TS	POPTR_0009s07450	POPTR_0009s07450 (11)	scaffold_9:6950396-6950790(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.668.1.S1_at	A	A1TS	POPTR_0014s17490	POPTR_0014s17490 (11)	scaffold_14:13718355-13718890(+) (11)	NA	NA	NA	AT3G07510.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g09930.1	expressed protein	Medtr7g046740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6680.1.S1_at	A	A1TS	POPTR_0006s10570	POPTR_0006s10570 (11)	scaffold_6:7909012-7909565(-) (11)	NA	NA	NA	AT3G51660.1	Tautomerase/MIF superfamily protein 	LOC_Os11g01600.1	"macrophage migration inhibitory factor, putative, expressed"	Medtr7g076390.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6682.1.S1_at	A	A1TA	POPTR_0008s17650	POPTR_0008s17650 (9)	scaffold_8:11861033-11861277(+) (9)	NA	Q9SP35	Mitochondrial import inner membrane translocase subunit Tim17	AT2G37410.2	translocase inner membrane subunit 17-2 	LOC_Os07g41330.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.6685.1.S1_at	A	A1TS	POPTR_0014s11230	POPTR_0014s11230 (9)	scaffold_14:8347983-8348400(+) (9)	NA	P81391	Myb-related protein 305	AT2G47190.1	myb domain protein 2 	LOC_Os05g04210.1	"MYB family transcription factor, putative, expressed"	Medtr1g106240.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6686.1.S1_at	A	A1TS	POPTR_0001s24980	POPTR_0001s24980 (11)	scaffold_1:24231548-24232101(-) (11)	NA	NA	NA	AT1G76440.3	HSP20-like chaperones superfamily protein 	NA	NA	Medtr2g007400.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6689.1.S1_at	A	A3TS	POPTR_0006s02890	POPTR_0006s02890 (11)//POPTR_0097s00200 (11)//POPTR_0006s02880 (9)	scaffold_6:1823177-1823218(+) (9)//scaffold_6:1837951-1838141(+) (11)//scaffold_97:4741-4938(-) (11)	POPTR_0006s02855 (8)	P02879	Ricin	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6689.1.S1_s_at	A	A2TS	POPTR_0006s02855	POPTR_0006s02855 (11)//POPTR_0006s02880 (11)	scaffold_6:1809000-1809266(-) (11)//scaffold_6:1822893-1823159(+) (11)	POPTR_0006s02890 (8)	P02879	Ricin	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.669.1.S1_at	A	A1TS	POPTR_0013s06250	POPTR_0013s06250 (10)	scaffold_13:4623451-4623693(+) (10)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT3G03690.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os10g30080.1	"xylosyltransferase, putative, expressed"	Medtr7g103520.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.6690.1.S1_at	A	A1TS	POPTR_0010s02780	POPTR_0010s02780 (11)	scaffold_10:3281539-3281960(-) (11)	NA	Q9ZNV9	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os05g44570.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g025860.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
Ptp.6690.1.S1_s_at	A	A1TS	POPTR_0010s02780	POPTR_0010s02780 (11)	scaffold_10:3281967-3282931(-) (11)	NA	Q9ZNV9	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os05g44570.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr2g025860.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
Ptp.6691.1.S1_at	A	A1TS	POPTR_0003s12330	POPTR_0003s12330 (11)	scaffold_3:12940591-12941103(-) (11)	NA	Q9FUL4	60S ribosomal protein L24	AT2G36620.1	ribosomal protein L24 	LOC_Os01g59990.2	"ribosomal protein L24, putative, expressed"	Medtr1g073730.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6691.1.S1_x_at	A	A1TS	POPTR_0003s12330	POPTR_0003s12330 (11)	scaffold_3:12940591-12941269(-) (11)	NA	Q9FUL4	60S ribosomal protein L24	AT2G36620.1	ribosomal protein L24 	LOC_Os01g59990.2	"ribosomal protein L24, putative, expressed"	Medtr1g073730.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6692.1.S1_at	A	A1TS	POPTR_0009s13240	POPTR_0009s13240 (9)	scaffold_9:10581600-10583549(+) (9)	NA	P45434	Translocon-associated protein subunit alpha	AT2G21160.1	"Translocon-associated protein (TRAP), alpha subunit "	LOC_Os06g50154.1	"translocon-associated protein subunit alpha precursor, putative, expressed"	Medtr4g100770.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6693.1.S1_s_at	A	A1TS	POPTR_0006s23580	POPTR_0006s23580 (9)	scaffold_6:22289702-22290189(+) (11)	NA	Q93VM8	Copper transporter 5	AT5G20650.1	copper transporter 5 	LOC_Os09g26900.1	"ctr copper transporter family protein, putative, expressed"	Medtr3g139090.1	Ctr copper transporter 	GO:0006825|copper ion transport	GO:0005375|copper ion transmembrane transporter activity	GO:0016021|integral to membrane
Ptp.6695.1.S1_s_at	A	A1TS	POPTR_0008s07550	POPTR_0008s07550 (11)	scaffold_8:4617985-4619537(-) (11)	NA	NA	NA	AT3G56210.4	ARM repeat superfamily protein 	LOC_Os03g46310.1	expressed protein	Medtr3g097260.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6697.1.S1_x_at	A	A1TS	POPTR_0006s10550	POPTR_0006s10550 (11)	scaffold_6:7899226-7899978(-) (11)	NA	P91850	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os11g01600.1	"macrophage migration inhibitory factor, putative, expressed"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6699.1.S1_s_at	A	A1TS	POPTR_0006s14010	POPTR_0006s14010 (11)	scaffold_6:11270338-11270588(+) (11)	NA	P17407	21 kDa protein	AT5G20740.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr8g132880.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.67.1.S1_at	A	A1TS	POPTR_0015s14260	POPTR_0015s14260 (11)	scaffold_15:13938929-13939513(+) (11)	NA	Q9D1P4	Cysteine and histidine-rich domain-containing protein 1	AT5G51700.1	protein binding;zinc ion binding 	LOC_Os02g33180.1	"rar1, putative, expressed"	Medtr1g130420.1	CHORD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.670.1.A1_at	A	A1TS	POPTR_0018s09260	POPTR_0018s09260 (10)	scaffold_18:10115072-10115190(+) (10)	NA	NA	NA	AT2G44970.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g48416.2	"lipase-related, putative, expressed"	Medtr8g006030.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6702.1.S1_s_at	A	A1TS	POPTR_0002s25240	POPTR_0002s25240 (11)	scaffold_2:22385540-22385781(+) (11)	NA	Q8W453	Putative lipid-transfer protein DIR1	AT5G48485.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g18990.1	"LTPL40 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g045700.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6705.1.S1_s_at	A	A1TS	POPTR_0016s14560	POPTR_0016s14560 (11)	scaffold_16:13751822-13751953(+) (11)	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g56330.1	"TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.6706.1.S1_x_at	A	A1TS	POPTR_0002s03030	POPTR_0002s03030 (11)	scaffold_2:1888146-1888582(+) (11)	NA	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6707.1.S1_s_at	A	A1TS	POPTR_0019s08240	POPTR_0019s08240 (11)	scaffold_19:9703215-9704229(-) (11)	NA	Q9XFH9	"Thioredoxin F2, chloroplastic"	AT5G16400.1	thioredoxin F2 	LOC_Os01g68480.1	"thioredoxin, putative, expressed"	Medtr7g089880.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.6708.1.S1_at	A	A1TS	POPTR_0005s27560	POPTR_0005s27560 (11)	scaffold_5:25163046-25163127(-) (11)	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6708.1.S1_x_at	A	A1TS	POPTR_0005s27560	POPTR_0005s27560 (11)	scaffold_5:25163047-25164101(-) (11)	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.671.1.S1_s_at	A	A1TS	POPTR_0014s02980	POPTR_0014s02980 (11)	scaffold_14:2447362-2447624(-) (11)	NA	O15488	Glycogenin-2	AT4G33330.2	plant glycogenin-like starch initiation protein 3 	LOC_Os03g08600.1	"glycosyl transferase, putative, expressed"	Medtr1g024490.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.6710.1.S1_at	A	A2TS	POPTR_0238s00200	POPTR_0238s00200 (11)//POPTR_0014s18770 (10)	scaffold_14:16177594-16178040(+) (10)//scaffold_238:16893-17339(-) (11)	NA	Q9FNC9	Mitochondrial import receptor subunit TOM22 homolog 2	AT5G43970.1	translocase of outer membrane 22-V 	LOC_Os02g29400.1	expressed protein	Medtr1g065560.1	"Mitochondrial import translocase, subunit Tom22 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6711.1.S1_s_at	A	A1TS	POPTR_0014s14200	POPTR_0014s14200 (11)	scaffold_14:10394738-10395213(-) (11)	NA	P51090	Chalcone synthase	AT5G13930.1	Chalcone and stilbene synthase family protein 	LOC_Os11g32650.1	"chalcone synthase, putative, expressed"	Medtr7g097310.1	"Chalcone and stilbene synthases, C-terminal "	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004315|3-oxoacyl-[acyl-carrier-protein] synthase activity	NA
Ptp.6712.1.S1_at	A	A1TS	POPTR_0001s35790	POPTR_0001s35790 (11)	scaffold_1:34142303-34142670(+) (11)	NA	Q4R6F8	T-complex protein 1 subunit beta	AT5G20890.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g42220.1	"T-complex protein, putative, expressed"	Medtr3g024690.1	"Protein kinase; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.6713.1.S1_at	A	A1TS	POPTR_0007s08580	POPTR_0007s08580 (11)	scaffold_7:7425080-7425365(+) (11)	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6713.1.S1_x_at	A	A1TS	POPTR_0007s08580	POPTR_0007s08580 (11)	scaffold_7:7424092-7425364(+) (11)	NA	NA	NA	AT1G42960.1	expressed protein localized to the inner membrane of the chloroplast. 	NA	NA	Medtr5g024620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6714.2.S1_a_at	A	A1TS	POPTR_0016s13490	POPTR_0016s13490 (11)	scaffold_16:12679358-12681826(+) (11)//scaffold_64:31326-33795(-) (11)	NA	Q9UTE8	Chromatin-remodeling complex subunit ies6	AT4G38495.1	"CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os04g20590.1	"YL1 nuclear protein C-terminal domain containing protein, expressed"	Medtr3g107050.1	"YL1 nuclear, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6715.1.S1_at	A	A2TS	POPTR_0001s42660	POPTR_0001s42660 (11)//POPTR_0128s00210 (11)	scaffold_1:42692987-42693361(-) (11)//scaffold_128:42859-43234(+) (11)	NA	P52758	Ribonuclease UK114	AT3G20390.1	endoribonuclease L-PSP family protein 	LOC_Os07g33240.1	"endoribonuclease, putative, expressed"	Medtr5g100060.1	YjgF-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6716.1.S1_at	A	A1TS	POPTR_0012s11020	POPTR_0012s11020 (10)	scaffold_12:11638961-11640500(-) (10)//scaffold_16:11019364-11019680(-) (10)	NA	P41098	60S ribosomal protein L34	AT1G26880.1	Ribosomal protein L34e superfamily protein 	LOC_Os09g24690.1	"60S ribosomal protein L34, putative, expressed"	Medtr7g009550.1	Ribosomal protein L34e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6717.1.S1_at	A	A1TS	POPTR_0010s02680	POPTR_0010s02680 (10)	scaffold_10:3139405-3139937(-) (10)	NA	B6IN38	50S ribosomal protein L33	AT5G18790.1	Ribosomal protein L33 family protein 	LOC_Os05g37884.1	"50S ribosomal protein L33, putative, expressed"	Medtr1g019620.1	Ribosomal protein L33 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6718.1.S1_s_at	A	A1TS	POPTR_0005s25700	POPTR_0005s25700 (11)	scaffold_5:23913343-23914241(-) (11)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6719.1.S1_at	A	A1TS	POPTR_0004s07630	POPTR_0004s07630 (11)	scaffold_4:6258165-6259148(+) (11)	NA	Q3T100	Microsomal glutathione S-transferase 3	AT1G65820.1	"microsomal glutathione s-transferase, putative "	LOC_Os03g50130.1	"microsomal glutathione S-transferase 3, putative, expressed"	Medtr5g084400.1	Membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6723.1.S1_at	A	A1TS	POPTR_0001s25370	POPTR_0001s25370 (11)	scaffold_1:24518569-24518862(-) (11)	NA	Q9ZW33	Mitochondrial import inner membrane translocase subunit Tim10	AT2G29530.2	Tim10/DDP family zinc finger protein 	LOC_Os03g61019.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr2g117410.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
Ptp.6725.1.S1_s_at	A	A2TS	POPTR_0004s19770	POPTR_0009s14930 (11)//POPTR_0004s19770 (11)	scaffold_4:19524597-19525196(+) (11)//scaffold_9:11595835-11597066(+) (11)	NA	Q65WT0	Protein BUD31 homolog 2	AT4G21110.1	G10 family protein 	LOC_Os05g37390.2	"G10 protein, putative, expressed"	Medtr4g132680.1	G10 protein 	NA	NA	GO:0005634|nucleus
Ptp.6726.1.S1_s_at	A	A1TS	POPTR_0008s05550	POPTR_0008s05550 (11)	scaffold_8:3226917-3228061(+) (11)	NA	Q55C17	"Trans-2,3-enoyl-CoA reductase"	AT3G55360.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os01g05670.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr5g094710.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
Ptp.6727.1.A1_s_at	A	A1TS	POPTR_0006s07470	POPTR_0006s07470 (11)	scaffold_6:5408006-5409373(-) (11)	NA	P81748	Macrophage migration inhibitory factor homolog	AT5G57170.1	Tautomerase/MIF superfamily protein 	LOC_Os06g48600.1	"macrophage migration inhibitory factor, putative, expressed"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6728.1.S1_at	A	A1TS	POPTR_0018s08040	POPTR_0018s08040 (11)	scaffold_18:8817273-8818452(-) (11)	NA	Q8R480	Nuclear pore complex protein Nup85	AT4G32910.1	"CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g54240.1	"nucleoporin, putative, expressed"	Medtr1g008010.1	Nup85 nucleoporin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6729.1.S1_at	A	A1TS	POPTR_0006s07060	POPTR_0006s07060 (11)	scaffold_6:5083921-5084168(+) (11)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g130240.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.673.1.A1_at	A	A1TS	POPTR_0005s06210	POPTR_0005s06210 (9)	scaffold_5:4070869-4071850(-) (9)	NA	NA	NA	AT1G48880.1	TRICHOME BIREFRINGENCE-LIKE 7 	LOC_Os05g35190.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr4g142610.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6731.1.S1_s_at	A	A1TS	POPTR_0005s24800	POPTR_0005s24800 (11)	scaffold_5:23242705-23244359(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6732.1.S1_at	A	A1TS	POPTR_0006s26540	POPTR_0006s26540 (11)	scaffold_6:24728484-24728801(-) (11)	NA	Q9C944	Probable histone H2A variant 3	AT1G52740.1	histone H2A protein 9 	LOC_Os03g53190.2	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr1g013390.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.6734.1.S1_s_at	A	A3TS	POPTR_0010s14320	POPTR_0010s14320 (11)//POPTR_0010s14330 (11)//POPTR_0010s14370 (10)	scaffold_10:13976534-13976980(+) (11)//scaffold_10:13982989-13983443(+) (11)//scaffold_10:14004083-14004520(+) (11)	NA	NA	NA	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os01g16120.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g039970.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6736.1.A1_at	A	A1TS	POPTR_0006s13490	POPTR_0006s13490 (11)	scaffold_6:10712053-10712520(+) (11)	NA	Q9LZ03	DNA topoisomerase 6 subunit A	AT5G02820.1	"Spo11/DNA topoisomerase VI, subunit A protein "	LOC_Os03g17610.1	"OsTOP6A3 - Topoisomerase 6 subunit A homolog 3, expressed"	Medtr5g091930.1	"DNA topoisomerase, type II "	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0003824|catalytic activity	GO:0005694|chromosome
Ptp.6738.1.S1_at	A	A1TS	POPTR_0005s25840	POPTR_0005s25840 (11)	scaffold_5:24047231-24047650(-) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT1G75580.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr5g021770.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6740.1.S1_at	A	A1TS	POPTR_0001s28970	POPTR_0001s28970 (11)	scaffold_1:27717767-27718641(+) (11)	NA	NA	NA	AT5G09570.1	Cox19-like CHCH family protein 	LOC_Os03g48080.1	"CHCH domain containing protein, expressed"	Medtr4g121310.2	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6740.1.S1_x_at	A	A1TS	POPTR_0001s28970	POPTR_0001s28970 (11)	scaffold_1:27717539-27718641(+) (11)	NA	NA	NA	AT5G09570.1	Cox19-like CHCH family protein 	LOC_Os03g48080.1	"CHCH domain containing protein, expressed"	Medtr4g121310.2	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6741.2.S1_a_at	A	A1TS	POPTR_0009s04680	POPTR_0009s04680 (11)	scaffold_9:4956888-4957797(-) (11)	NA	NA	NA	AT2G29590.1	Thioesterase superfamily protein 	LOC_Os02g32200.1	"thioesterase family protein, putative, expressed"	Medtr5g078190.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6742.1.S1_at	A	A1TS	POPTR_0014s10300	POPTR_0014s10300 (11)	scaffold_14:7737840-7738564(+) (11)	NA	NA	NA	AT4G01510.1	Arv1-like protein 	LOC_Os03g57090.1	"arv1, putative, expressed"	Medtr7g106480.1	Arv1-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6743.1.A1_at	A	A1TS	POPTR_0002s22410	POPTR_0002s22410 (11)	scaffold_2:19105152-19106643(-) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os10g31950.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6743.1.A1_s_at	A	A1TS	POPTR_0002s22410	POPTR_0002s22410 (11)	scaffold_2:19105449-19106464(-) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os10g31950.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6744.1.S1_at	A	A1TS	POPTR_0014s09260	POPTR_0014s09260 (11)	scaffold_14:6876288-6876627(+) (11)	NA	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6745.1.S1_a_at	A	A1TS	POPTR_0015s06940	POPTR_0015s06940 (11)	scaffold_15:7965775-7967958(-) (11)	NA	Q9SD80	Mitochondrial import receptor subunit TOM5 homolog	AT5G08040.1	mitochondrial import receptor subunit TOM5 homolog 	LOC_Os12g38650.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6746.1.S1_at	A	A1TS	POPTR_0003s04070	POPTR_0003s04070 (11)	scaffold_3:4720647-4722573(-) (11)	NA	O81488	PHD finger protein At5g26210	AT2G02470.1	alfin-like 6 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6748.1.S1_at	A	A1TS	POPTR_0001s05100	POPTR_0001s05100 (9)	scaffold_1:3927287-3928952(+) (9)	NA	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.675.1.A1_at	A	A1TS	POPTR_0004s18130	POPTR_0004s18130 (11)	scaffold_4:18123516-18124464(-) (11)	NA	O22468	WD-40 repeat-containing protein MSI2	AT2G16780.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6751.1.A1_s_at	A	A1TS	POPTR_0016s01620	POPTR_0016s01620 (11)	scaffold_16:737718-738138(+) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6752.1.S1_s_at	A	A1TS	POPTR_0003s00880	POPTR_0003s00880 (11)	scaffold_3:715472-716643(-) (11)	NA	Q9Y6D9	Mitotic spindle assembly checkpoint protein MAD1	AT5G49880.1	mitotic checkpoint family protein 	LOC_Os01g65580.3	"mitotic checkpoint family protein, putative, expressed"	NA	NA	GO:0016032|viral reproduction	NA	NA
Ptp.6753.1.S1_s_at	A	A1TS	POPTR_0006s02780	POPTR_0006s02780 (11)	scaffold_6:1759552-1759997(+) (11)	NA	P36591	Dihydrofolate reductase	AT4G24380.1	"INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g48770.1	"serine hydrolase domain containing protein, expressed"	Medtr7g104240.1	Protein of unknown function DUF341 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6754.1.S1_at	A	A1TS	POPTR_0015s08290	POPTR_0015s08290 (11)	scaffold_15:9555896-9556124(+) (11)//scaffold_968:287-515(+) (11)	NA	Q93X17	Snakin-2	AT5G14920.1	Gibberellin-regulated family protein 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr8g125220.1	"Gonadotropin, beta chain; Gibberellin regulated protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6754.1.S1_s_at	A	A1TS	POPTR_0015s08290	POPTR_0015s08290 (11)	scaffold_15:9555221-9555950(+) (11)	NA	Q93X17	Snakin-2	AT5G14920.1	Gibberellin-regulated family protein 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr8g125220.1	"Gonadotropin, beta chain; Gibberellin regulated protein "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6755.1.S1_at	A	A1TS	POPTR_0019s11800	POPTR_0019s11800 (10)	scaffold_19:13016840-13016944(-) (10)	NA	NA	NA	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	NA	NA	Medtr3g137680.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.6755.1.S1_x_at	A	A1TS	POPTR_0019s11800	POPTR_0019s11800 (10)	scaffold_19:13016840-13016964(-) (10)	NA	NA	NA	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	NA	NA	Medtr3g137680.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.6756.1.S1_at	A	A1TS	POPTR_0007s02510	POPTR_0007s02510 (11)	scaffold_7:1486968-1487874(-) (11)	NA	O22059	Transcription factor CPC	AT2G46410.1	Homeodomain-like superfamily protein 	LOC_Os01g43180.1	"MYB family transcription factor, putative"	Medtr2g103740.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6757.1.S1_at	A	A1TS	POPTR_0003s14630	POPTR_0003s14630 (11)	scaffold_3:14650720-14651195(-) (11)	NA	P09379	GTPase-activating protein GYP7	AT5G41940.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.6758.1.A1_at	A	A1TS	POPTR_0012s14560	POPTR_0012s14560 (11)	scaffold_12:14415589-14415913(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.6758.1.A1_x_at	A	A1TS	POPTR_0012s14560	POPTR_0012s14560 (11)	scaffold_12:14415507-14415913(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.6759.1.S1_at	A	A1TS	POPTR_0006s11420	POPTR_0006s11420 (11)	scaffold_6:8656926-8656964(-) (11)	NA	Q9M385	"50S ribosomal protein L17, chloroplastic"	AT3G54210.1	Ribosomal protein L17 family protein 	LOC_Os03g60100.1	"50S ribosomal protein L17, putative, expressed"	Medtr3g143710.1	Ribosomal protein L17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6761.1.S1_at	A	A1TS	POPTR_0002s14930	POPTR_0002s14930 (11)	scaffold_2:11045159-11045918(-) (11)	NA	O82531	Proteasome subunit beta type-1	AT3G60820.3	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os09g32800.1	"peptidase, T1 family, putative, expressed"	Medtr2g117530.1	"20S proteasome, A and B subunits "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.6762.1.S1_at	A	A1TS	POPTR_0001s31210	POPTR_0001s31210 (11)	scaffold_1:29546694-29547125(+) (11)	NA	O22647	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6762.1.S1_x_at	A	A1TS	POPTR_0001s31210	POPTR_0001s31210 (11)	scaffold_1:29546662-29547152(+) (11)	NA	O22647	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6763.1.S1_s_at	A	A1TS	POPTR_0006s01450	POPTR_0006s01450 (11)	scaffold_6:860481-861035(+) (11)//scaffold_6:878757-879315(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6764.1.S1_s_at	A	A1TS	POPTR_0012s06735	POPTR_0012s06735 (11)	scaffold_12:7181484-7181958(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6766.1.S1_s_at	A	A1TS	POPTR_0010s09820	POPTR_0010s09820 (11)	scaffold_10:10442970-10443128(-) (11)	NA	Q8LC83	40S ribosomal protein S24-2	AT5G28060.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6768.1.S1_at	A	A1TS	POPTR_0013s12110	POPTR_0013s12110 (11)	scaffold_13:12763893-12763985(-) (11)	NA	Q5XH16	NHP2-like protein 1	AT4G12600.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os03g13800.1	"ribosomal protein L7Ae, putative, expressed"	Medtr8g119890.1	Ribosomal protein L7AE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.677.1.A1_s_at	A	A1TS	POPTR_0002s03060	POPTR_0002s03060 (11)	scaffold_2:1905612-1907316(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G75500.2	Walls Are Thin 1 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g028570.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.6771.1.S1_s_at	A	A1TS	POPTR_0005s22790	POPTR_0005s22790 (11)	scaffold_5:21688840-21690009(+) (11)	NA	Q9XHS0	40S ribosomal protein S12	AT2G32060.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g12650.3	"ribosomal protein L7Ae, putative, expressed"	Medtr5g012950.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6772.1.A1_x_at	A	A1TS	POPTR_0013s01830	POPTR_0013s01830 (9)	scaffold_13:1051997-1052321(+) (9)	NA	Q3E902	40S ribosomal protein S21-2	AT5G27700.1	Ribosomal protein S21e  	LOC_Os03g46490.1	"40S ribosomal protein S21, putative, expressed"	Medtr7g084190.1	Ribosomal protein S21e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6775.1.S1_at	A	A1TS	POPTR_0007s10780	POPTR_0007s10780 (9)	scaffold_7:10863312-10863613(-) (9)	NA	P47927	Floral homeotic protein APETALA 2	AT4G36920.2	Integrase-type DNA-binding superfamily protein 	LOC_Os04g55560.3	"AP2 domain containing protein, expressed"	Medtr5g016710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.6777.2.S1_s_at	A	A2TS	POPTR_0008s15190	POPTR_0008s15190 (9)//POPTR_0010s09820 (9)	scaffold_10:10445149-10445183(-) (9)//scaffold_8:10163892-10163926(+) (9)	NA	Q8LC83	40S ribosomal protein S24-2	AT5G28060.1	Ribosomal protein S24e family protein 	LOC_Os06g36160.1	"40S ribosomal protein S24, putative, expressed"	Medtr1g096430.1	"Ribosomal protein S24e; Nucleotide-binding, alpha-beta plait "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6778.1.S1_s_at	A	A1TS	POPTR_0002s23730	POPTR_0002s23730 (11)	scaffold_2:21255096-21255455(+) (11)	NA	P35694	Brassinosteroid-regulated protein BRU1	AT3G23730.1	xyloglucan endotransglucosylase/hydrolase 16 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr3g104510.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.678.1.A1_at	A	A1TS	POPTR_0002s19910	POPTR_0002s19910 (9)	scaffold_2:15851104-15851769(-) (9)	NA	Q6TUG0	DnaJ homolog subfamily B member 11	AT3G62600.1	DNAJ heat shock family protein 	LOC_Os05g06440.1	"dnaJ homolog subfamily B member 11 precursor, putative, expressed"	Medtr7g132750.1	Heat shock protein DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.6781.1.S1_s_at	A	A1TS	POPTR_0014s12260	POPTR_0014s12260 (11)	scaffold_14:9053024-9054038(+) (11)	NA	P09012	U1 small nuclear ribonucleoprotein A	AT2G47580.1	spliceosomal protein U1A 	LOC_Os05g06280.1	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr5g082430.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6782.1.S1_a_at	A	A1TS	POPTR_0006s26980	POPTR_0006s26980 (10)	scaffold_6:25004716-25005080(+) (10)	NA	Q8LHH9	Probable RNA-dependent RNA polymerase SHL2	AT3G49500.1	RNA-dependent RNA polymerase 6 	LOC_Os01g34350.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr3g136860.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6782.1.S1_at	A	A1TS	POPTR_0006s26980	POPTR_0006s26980 (9)	scaffold_6:25004533-25004729(+) (9)	NA	Q8LHH9	Probable RNA-dependent RNA polymerase SHL2	AT3G49500.1	RNA-dependent RNA polymerase 6 	LOC_Os01g34350.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr3g136860.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6782.2.S1_a_at	A	A1TS	POPTR_0006s26980	POPTR_0006s26980 (10)	scaffold_6:25004780-25005116(+) (10)	NA	Q8LHH9	Probable RNA-dependent RNA polymerase SHL2	AT3G49500.1	RNA-dependent RNA polymerase 6 	LOC_Os01g34350.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr3g136860.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6786.1.S1_at	A	A1TS	POPTR_0002s14560	POPTR_0002s14560 (11)	scaffold_2:10819810-10821572(-) (11)	NA	Q84WW5	Vesicle-associated protein 1-3	AT4G00170.1	Plant VAMP (vesicle-associated membrane protein) family protein 	LOC_Os08g05890.1	"MSP domain containing protein, expressed"	Medtr5g012520.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
Ptp.6787.1.S1_at	A	A1TS	POPTR_0013s05810	POPTR_0013s05810 (10)	scaffold_13:4195343-4195748(+) (10)	NA	Q3UFM5	Nucleolar MIF4G domain-containing protein 1	AT5G17930.1	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os05g05450.1	"MA3 domain containing protein, expressed"	Medtr7g103040.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
Ptp.6788.1.S1_at	A	A1TS	POPTR_0013s05750	POPTR_0013s05750 (11)	scaffold_13:4121015-4121508(-) (11)	NA	NA	NA	AT5G18260.1	RING/U-box superfamily protein 	LOC_Os03g20980.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g044950.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6789.1.S1_at	A	A1TS	POPTR_0001s12750	POPTR_0001s12750 (10)	scaffold_1:9878422-9878751(+) (10)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os08g42620.2	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.6795.1.S1_at	A	A1TS	POPTR_0005s25090	POPTR_0005s25090 (9)	scaffold_5:23435853-23436514(+) (9)	NA	Q9SU08	Auxilin-related protein 1	AT1G75310.1	auxin-like 1 protein 	LOC_Os05g50370.1	"dnaJ domain containing protein, expressed"	Medtr4g143440.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6796.1.S1_at	A	A1TS	POPTR_0014s16860	POPTR_0014s16860 (9)	scaffold_14:12986515-12987620(+) (9)	NA	NA	NA	AT5G48240.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). 	LOC_Os11g16480.1	"transposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.68.3.S1_s_at	A	A1TS	POPTR_0017s01640	POPTR_0017s01640 (11)	scaffold_17:1175267-1175417(+) (11)//scaffold_96:55383-55533(-) (11)	NA	NA	NA	AT4G25670.2	"unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G25690.2). "	LOC_Os06g01770.2	expressed protein	Medtr1g126490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.680.1.A1_at	A	A1TS	POPTR_0006s16000	POPTR_0006s16000 (9)	scaffold_6:13777135-13777251(+) (9)	NA	NA	NA	AT2G03500.1	Homeodomain-like superfamily protein 	LOC_Os01g08160.1	"MYB family transcription factor, putative, expressed"	Medtr8g118880.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6800.1.S1_at	A	A1TS	POPTR_0014s06430	POPTR_0014s06430 (9)	scaffold_14:4886999-4887459(+) (9)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT2G45340.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.6801.1.S1_at	A	A1TS	POPTR_0006s24100	POPTR_0006s24100 (10)	scaffold_6:22777854-22777897(-) (10)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6802.1.S1_s_at	A	A1TS	POPTR_0017s10730	POPTR_0017s10730 (11)	scaffold_17:10244979-10245093(+) (11)	NA	Q7DLS1	Proteasome subunit beta type-7-B	AT5G40580.2	20S proteasome beta subunit PBB2 	LOC_Os05g09490.2	"peptidase, T1 family, putative, expressed"	Medtr7g032520.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.6803.1.S1_at	A	A1TS	POPTR_0018s09270	POPTR_0018s09270 (9)	scaffold_18:10135425-10135879(+) (9)	NA	Q9M080	Ethylene-responsive transcription factor ERF043	AT4G32800.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43970.1	"AP2 domain containing protein, expressed"	Medtr4g159580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.6805.1.S1_at	A	A1TS	POPTR_0009s02650	POPTR_0009s02650 (10)	scaffold_9:3417844-3418391(+) (10)	NA	P46254	"Heat shock 22 kDa protein, mitochondrial"	AT5G51440.1	HSP20-like chaperones superfamily protein 	LOC_Os06g11610.1	"heat shock 22 kDa protein, mitochondrial precursor, putative, expressed"	Medtr7g124360.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6806.1.S1_at	A	A1TS	POPTR_0013s13000	POPTR_0013s13000 (11)	scaffold_13:13578417-13578987(-) (11)	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6806.2.S1_s_at	A	A1TS	POPTR_0013s13000	POPTR_0013s13000 (11)	scaffold_13:13582020-13583885(-) (11)	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6807.1.S1_at	A	A1TS	POPTR_0013s02990	POPTR_0013s02990 (10)	scaffold_13:1816174-1816849(+) (10)	NA	O65759	Histone H2AX	AT1G54690.1	gamma histone variant H2AX 	LOC_Os12g34510.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr7g130040.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.6809.1.S1_at	A	A1MS	POPTR_0008s12830	POPTR_0008s12830 (9)	scaffold_8:8332541-8333051(-) (9)	NA	Q9S7Z8	Auxin efflux carrier component 3	AT1G70940.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.681.1.A1_at	A	A1MS	POPTR_0002s16420	POPTR_0002s16420 (11)	scaffold_2:12281756-12281886(-) (11)	NA	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
Ptp.681.1.A1_s_at	A	A1TS	POPTR_0002s16420	POPTR_0002s16420 (11)	scaffold_2:12281473-12281743(-) (11)	NA	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
Ptp.6811.1.S1_at	A	A1TS	POPTR_0003s16080	POPTR_0003s16080 (9)	scaffold_3:15691547-15692154(+) (9)	NA	Q8VYZ0	E3 ubiquitin-protein ligase ORTHRUS 2	AT1G57820.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01230.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g159770.1	"Zinc finger, RING-type; SRA-YDG; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6813.1.S1_at	A	A1TS	POPTR_0001s37130	POPTR_0001s37130 (11)	scaffold_1:35954711-35955128(+) (11)	NA	NA	NA	AT5G55510.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os12g33020.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr5g101760.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.6816.1.S1_s_at	A	A1TS	POPTR_0018s10340	POPTR_0018s10340 (11)	scaffold_18:11264122-11264433(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.1	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6817.1.A1_at	A	A1TS	POPTR_0001s07310	POPTR_0001s07310 (11)	scaffold_1:5495966-5497528(+) (11)	NA	Q7TQ20	DnaJ homolog subfamily C member 2	AT3G11450.1	DnaJ domain ;Myb-like DNA-binding domain 	LOC_Os04g30890.1	"MYB family transcription factor, putative, expressed"	Medtr7g132840.1	"Heat shock protein DnaJ, N-terminal; Homeodomain-related; "	NA	GO:0031072|heat shock protein binding	NA
Ptp.6818.1.S1_s_at	A	A1TS	POPTR_0002s20250	POPTR_0002s20250 (11)	scaffold_2:16207335-16207490(+) (11)	NA	O46072	Probable ATP-dependent RNA helicase kurz	AT1G33390.1	RNA helicase family protein 	LOC_Os02g50370.1	"helicase domain-containing protein, putative, expressed"	Medtr4g024790.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.6819.1.A1_x_at	A	A1TS	POPTR_0019s13590	POPTR_0019s13590 (11)	scaffold_19:14481238-14484146(-) (11)	NA	NA	NA	AT2G20820.1	unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g38520.1	expressed protein	AC229695_7.1	hypothetical protein AC229695.5 30108-33175 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.682.1.A1_s_at	A	A1TS	POPTR_0010s23690	POPTR_0010s23690 (11)	scaffold_10:20186835-20187153(-) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G04420.3	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g57690.2	"kelch repeat protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6825.1.S1_at	A	A1TS	POPTR_0003s20400	POPTR_0003s20400 (10)	scaffold_3:18910821-18911371(+) (10)	NA	Q8VWG3	Protein TRANSPARENT TESTA 1	AT3G57670.1	C2H2-type zinc finger family protein 	LOC_Os06g40960.1	"ZOS6-05 - C2H2 zinc finger protein, expressed"	Medtr7g110960.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.6828.1.A1_at	A	A1TS	POPTR_0001s11620	POPTR_0001s11620 (11)	scaffold_1:9038407-9040676(-) (11)	NA	NA	NA	AT1G80245.3	Spc97 / Spc98 family of spindle pole body (SBP) component 	NA	NA	Medtr8g011930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6829.1.S1_at	A	A1TS	POPTR_0005s17350	POPTR_0005s17350 (11)	scaffold_5:14661198-14661708(-) (11)	NA	Q9THX6	"Thylakoid lumenal 29 kDa protein, chloroplastic"	AT4G09010.1	ascorbate peroxidase 4 	LOC_Os04g51300.1	"peroxidase precursor, putative, expressed"	Medtr5g073820.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.6830.1.S1_at	A	A1TS	POPTR_0011s11140	POPTR_0011s11140 (10)	scaffold_11:13859632-13859824(-) (10)//scaffold_11:13897278-13897470(+) (9)//scaffold_1585:4711-4903(-) (10)//scaffold_1615:2038-2230(+) (9)	NA	P19873	Inhibitor of trypsin and hageman factor	AT5G43580.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr5g097390.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
Ptp.6831.1.S1_s_at	A	A1TS	POPTR_0016s01620	POPTR_0016s01620 (11)	scaffold_16:736867-737123(+) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6833.1.S1_at	A	A1TS	POPTR_0008s04300	POPTR_0008s04300 (9)	scaffold_8:2404597-2406479(-) (9)	NA	Q9ZPV5	Nucleolar complex protein 2 homolog	AT3G55510.1	Noc2p family 	LOC_Os12g06610.1	"nucleolar complex protein 2, putative, expressed"	Medtr1g140790.1	Protein of unknown function UPF0120 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6834.1.S1_at	A	A1TS	POPTR_0016s14020	POPTR_0016s14020 (11)	scaffold_16:13226025-13227220(-) (11)	NA	NA	NA	AT2G40435.1	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g47960.1	"basic helix-loop-helix domain containing protein, expressed"	Medtr5g091250.1	"transcription regulator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6835.1.A1_at	A	A1TS	POPTR_0006s11560	POPTR_0006s11560 (11)	scaffold_6:8762834-8763368(-) (11)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6836.1.S1_at	A	A1TS	POPTR_0015s11130	POPTR_0015s11130 (9)	scaffold_15:11785258-11785624(-) (9)	NA	Q9FYA2	Probable WRKY transcription factor 75	AT5G13080.1	WRKY DNA-binding protein 75 	LOC_Os11g29870.1	"OsWRKY72 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr2g037930.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.6838.2.S1_a_at	A	A7TS	POPTR_0001s22830	POPTR_0001s22850 (11)//POPTR_0001s22910 (11)//POPTR_0001s22830 (11)//POPTR_0001s22920 (11)//POPTR_0001s22900 (11)//POPTR_0001s22880 (11)//POPTR_0001s22930 (11)	scaffold_1:21742418-21742457(-) (11)//scaffold_1:21808733-21808772(-) (11)//scaffold_1:21859395-21859434(-) (11)//scaffold_1:21879479-21879518(-) (11)//scaffold_1:21901317-21901356(-) (11)//scaffold_1:21924822-21924861(-) (11)//scaffold_1:21946764-21946803(-) (11)	NA	Q9FSG7	Thaumatin-like protein 1a	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os07g23470.1	"thaumatin, putative, expressed"	Medtr7g124050.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6839.1.A1_at	A	A1TS	POPTR_0004s21630	POPTR_0004s21630 (11)	scaffold_4:20664760-20665083(+) (11)	NA	P54797	Ser/Thr-rich protein T10 in DGCR region	AT4G38260.1	Protein of unknown function (DUF833) 	LOC_Os09g15480.1	"Ser/Thr-rich protein T10 in DGCR region, putative, expressed"	CU651566_13.1	Protein of unknown function DUF833 CU651566.9 80796-76694 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6839.2.S1_at	A	A1TS	POPTR_0004s21630	POPTR_0004s21630 (11)	scaffold_4:20663221-20664652(+) (11)	NA	P54797	Ser/Thr-rich protein T10 in DGCR region	AT4G38260.1	Protein of unknown function (DUF833) 	LOC_Os09g15480.1	"Ser/Thr-rich protein T10 in DGCR region, putative, expressed"	CU651566_13.1	Protein of unknown function DUF833 CU651566.9 80796-76694 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.684.1.A1_x_at	A	A1TS	POPTR_0002s22430	POPTR_0002s22430 (9)	scaffold_2:19165370-19165903(+) (9)	NA	O22466	WD-40 repeat-containing protein MSI1	AT5G58230.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6841.1.S1_at	A	A1TS	POPTR_0004s20120	POPTR_0004s20120 (11)	scaffold_4:19773482-19774705(-) (11)	NA	Q6D2F1	Bifunctional polymyxin resistance protein ArnA	AT1G08200.1	UDP-D-apiose/UDP-D-xylose synthase 2 	LOC_Os01g73790.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g137650.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.6843.1.S1_s_at	A	A1TS	POPTR_0005s27480	POPTR_0005s27480 (11)	scaffold_5:25125972-25126438(+) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os12g17900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.6845.1.S1_at	A	A1TS	POPTR_0010s23200	POPTR_0010s23200 (9)	scaffold_10:19833332-19833864(+) (9)	NA	O27555	Putative arsenical pump-driving ATPase	AT3G10350.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g51100.1	"arsenical pump-driving ATPase, putative, expressed"	Medtr1g120500.1	Anion-transporting ATPase 	GO:0006875|cellular metal ion homeostasis	GO:0005524|ATP binding	NA
Ptp.6846.1.S1_s_at	A	A1TS	POPTR_0004s19680	POPTR_0004s19680 (11)	scaffold_4:19464769-19465064(+) (11)	NA	P41099	60S acidic ribosomal protein P2	AT3G44590.1	60S acidic ribosomal protein family 	LOC_Os05g37330.1	"60S acidic ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6847.1.S1_a_at	A	A4TS	POPTR_0013s10070	POPTR_0013s10070 (11)//POPTR_0013s10080 (11)//POPTR_0279s00200 (11)//POPTR_0013s10090 (11)	scaffold_13:10057597-10057632(-) (11)//scaffold_13:10061036-10061071(-) (11)//scaffold_13:10074302-10074337(-) (11)//scaffold_279:15926-15961(-) (11)	NA	Q15GI4	Eugenol synthase 1	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009470.2	NmrA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6847.1.S1_at	A	A1TS	POPTR_0013s10090	POPTR_0013s10090 (11)	scaffold_13:10044572-10054079(-) (11)//scaffold_13:10054005-10060410(-) (11)//scaffold_13:10073602-10073676(-) (11)	NA	Q15GI4	Eugenol synthase 1	AT4G39230.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009310.1	NmrA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6847.2.S1_s_at	A	A4TS	POPTR_0013s10070	POPTR_0013s10070 (11)//POPTR_0013s10080 (11)//POPTR_0279s00200 (11)//POPTR_0013s10090 (11)	scaffold_13:10047988-10057559(-) (11)//scaffold_13:10054326-10060998(-) (11)//scaffold_13:10073923-10074264(-) (11)//scaffold_279:15444-15888(-) (11)	NA	Q15GI4	Eugenol synthase 1	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009470.2	NmrA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6848.2.S1_s_at	A	A1TS	POPTR_0012s02860	POPTR_0012s02860 (11)	scaffold_12:2316055-2316818(-) (11)	NA	Q8LCW9	60S acidic ribosomal protein P1-1	AT5G24510.1	60S acidic ribosomal protein family 	LOC_Os08g02340.2	"60S acidic ribosomal protein, putative, expressed"	Medtr3g122810.1	Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6849.2.S1_s_at	A	A1TS	POPTR_0006s02500	POPTR_0006s02500 (11)	scaffold_6:1634053-1634734(-) (11)	NA	Q9LUW5	DEAD-box ATP-dependent RNA helicase 53	AT3G22330.1	putative mitochondrial RNA helicase 2 	LOC_Os07g05050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g097200.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.6850.1.S1_at	A	A1MS	POPTR_0015s05480	POPTR_0015s05480 (11)	scaffold_15:5825648-5825728(+) (11)	NA	NA	NA	AT3G17670.2	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os04g57780.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g019290.1	Tetratricopeptide-like helical; Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6852.1.S1_s_at	A	A1TS	POPTR_0001s33250	POPTR_0001s33250 (11)	scaffold_1:31448874-31450475(+) (11)	NA	NA	NA	AT1G27435.1	unknown protein; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g005070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6856.1.S1_s_at	A	A1TS	POPTR_0012s03380	POPTR_0012s03380 (11)	scaffold_12:2669784-2669989(+) (11)	NA	Q84W65	"SufE-like protein, chloroplastic"	AT1G55805.1	BolA-like family protein 	LOC_Os03g11990.3	"bolA, putative, expressed"	AC233100_36.1	BolA-like protein; Fe-S metabolism associated SufE AC233100.6 121683-123592 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6857.1.S1_s_at	A	A1TS	POPTR_0009s16730	POPTR_0009s16730 (11)	scaffold_9:12646233-12646800(-) (11)	NA	Q9SFW6	Cyclin-B2-4	AT1G76310.1	CYCLIN B2;4 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.6857.2.S1_s_at	A	A1TS	POPTR_0009s16730	POPTR_0009s16730 (11)	scaffold_9:12647077-12649077(-) (11)	NA	Q9SFW6	Cyclin-B2-4	AT1G76310.1	CYCLIN B2;4 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.6861.1.A1_at	A	A2TS	POPTR_0013s14240	POPTR_0013s14240 (11)//POPTR_0735s00200 (10)	scaffold_13:14517503-14517959(-) (11)//scaffold_735:44-364(-) (10)	POPTR_0019s13610 (6)	Q9SKT6	Probable galacturonosyltransferase 10	AT2G20810.1	galacturonosyltransferase 10 	LOC_Os04g54360.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g018990.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.6862.1.S1_at	A	A1TS	POPTR_0007s11160	POPTR_0007s11160 (10)	scaffold_7:11423865-11424473(+) (10)	NA	NA	NA	AT5G66800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g52490.2	expressed protein	Medtr5g017580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6863.1.S1_at	A	A1TS	POPTR_0001s16850	POPTR_0001s16850 (10)	scaffold_1:13660446-13660889(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g025040.1	"serine rich protein, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6864.1.A1_at	A	A1TS	POPTR_0005s11240	POPTR_0005s11240 (9)	scaffold_5:8144541-8144998(-) (9)	NA	Q9SI03	Metal tolerance protein 12	AT2G04620.1	Cation efflux family protein 	LOC_Os08g32650.1	"cation efflux family protein, putative, expressed"	Medtr7g111990.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
Ptp.6865.1.A1_s_at	A	A1TS	POPTR_0009s04450	POPTR_0009s04450 (11)	scaffold_9:4823755-4826131(-) (11)	NA	Q9ZW33	Mitochondrial import inner membrane translocase subunit Tim10	AT2G29530.2	Tim10/DDP family zinc finger protein 	LOC_Os03g61019.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr2g117410.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
Ptp.6867.1.S1_at	A	A1TS	POPTR_0017s13990	POPTR_0017s13990 (11)	scaffold_17:14169896-14171494(+) (11)	NA	Q0DWQ7	Cyclin-B1-2	AT5G38660.2	acclimation of photosynthesis to  environment 	LOC_Os02g55640.1	"proteasome maturation factor UMP1 family protein, expressed"	Medtr5g008120.1	Proteasome maturation factor UMP1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6869.1.S1_at	A	A1TS	POPTR_0007s01170	POPTR_0007s01170 (11)	scaffold_7:630647-632016(+) (11)	NA	Q9XFD1	Nuclear cap-binding protein subunit 2	AT5G44200.2	CAP-binding protein 20 	LOC_Os02g39890.1	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.687.1.A1_at	A	A1TS	POPTR_0001s37450	POPTR_0001s37450 (11)	scaffold_1:36437097-36437541(-) (11)	NA	NA	NA	AT5G55600.3	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os07g41640.1	"agenet domain-containing protein, putative, expressed"	Medtr2g030390.1	Bromo adjacent region; Xylose isomerase; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
Ptp.6870.1.S1_at	A	A1TS	POPTR_0001s47730	POPTR_0001s47730 (11)	scaffold_1:47889923-47890451(-) (11)	NA	Q8RXZ4	Probable protein phosphatase 2C 18	AT1G79630.1	Protein phosphatase 2C family protein 	LOC_Os08g39100.1	"protein phosphatase 2C, putative, expressed"	Medtr7g089830.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6871.1.S1_at	A	A1TS	POPTR_0007s04620	POPTR_0007s04620 (9)	scaffold_7:2866203-2868535(+) (9)	NA	O65154	RNA polymerase II transcriptional coactivator KIWI	AT5G09250.1	ssDNA-binding transcriptional regulator 	LOC_Os02g34830.1	"tetratricopeptide repeat domain containing protein, expressed"	AC235665_4.1	ssDNA-binding transcriptional regulator AC235665.2 17083-14849 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003713|transcription coactivator activity	NA
Ptp.6872.1.A1_at	A	A1TS	POPTR_0004s17740	POPTR_0004s17740 (11)	scaffold_4:17806367-17806895(-) (11)	NA	Q9LUS2	"Translocase of chloroplast 120, chloroplastic"	AT3G16620.1	translocon outer complex protein 120 	LOC_Os10g40110.1	"GTP binding protein, putative, expressed"	Medtr2g130100.1	AIG1 	NA	GO:0005525|GTP binding	NA
Ptp.6874.1.S1_s_at	A	A2TS	POPTR_0004s09520	POPTR_0004s09520 (11)//POPTR_0004s09540 (11)	scaffold_4:8058669-8058995(+) (11)//scaffold_4:8079206-8079532(+) (11)	POPTR_0004s09530 (7)//POPTR_0004s09570 (7)//POPTR_0004s09550 (6)	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39050.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g51660.1	"transferase family protein, putative, expressed"	Medtr7g073580.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.6875.1.S1_s_at	A	A1TS	POPTR_0003s10270	POPTR_0003s10270 (11)	scaffold_3:11319970-11321396(+) (11)	NA	O04066	Acyl-CoA-binding protein	AT1G31812.1	acyl-CoA-binding protein 6 	LOC_Os03g37960.1	"acyl CoA binding protein, putative"	Medtr5g026900.1	"Acyl-coA-binding protein, ACBP "	NA	GO:0000062|acyl-CoA binding	NA
Ptp.6876.1.A1_a_at	A	A1TS	POPTR_0007s04730	POPTR_0007s04730 (11)	scaffold_7:2939308-2939590(-) (11)	NA	NA	NA	AT4G33480.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3727 (InterPro:IPR022203); Has 348 Blast hits to 348 proteins in 78 species: Archae - 0; Bacteria - 101; Metazoa - 0; Fungi - 0; Plants - 183; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). 	LOC_Os04g59570.2	expressed protein	Medtr4g143310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6877.1.S1_a_at	A	A1TS	POPTR_0001s27170	POPTR_0001s27170 (11)	scaffold_1:26099127-26099399(+) (11)	NA	Q9BZE9	Tether containing UBX domain for GLUT4	AT3G27310.1	plant UBX domain-containing protein 1 	LOC_Os04g40870.1	"alveolar soft part sarcoma chromosome region, candidate 1, putative, expressed"	Medtr6g024990.1	UBX 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6878.1.S1_s_at	A	A1TS	POPTR_0014s05550	POPTR_0014s05550 (11)	scaffold_14:4149903-4150343(-) (11)	NA	O81908	"Pentatricopeptide repeat-containing protein At1g02060, chloroplastic"	AT1G02060.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g02950.1	"pentatricopeptide, putative, expressed"	Medtr7g041080.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6879.1.S1_x_at	A	A1TS	POPTR_0010s21580	POPTR_0010s21580 (10)	scaffold_10:18803779-18804646(+) (10)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6880.1.S1_at	A	A1TS	POPTR_0004s13455	POPTR_0004s13455 (9)	scaffold_4:13549243-13552921(+) (9)	NA	P64956	Uncharacterized protein Mb2253c	AT3G01410.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g08050.1	"retrotransposon protein, putative, unclassified"	Medtr2g120570.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	GO:0016234|inclusion body
Ptp.6880.2.S1_s_at	A	A1MS	POPTR_0004s13455	POPTR_0004s13455 (11)	scaffold_4:13553994-13554244(+) (11)	NA	P64956	Uncharacterized protein Mb2253c	AT3G01410.2	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g08050.1	"retrotransposon protein, putative, unclassified"	Medtr2g120570.1	Ribonuclease H 	NA	GO:0004523|ribonuclease H activity||GO:0003676|nucleic acid binding	GO:0016234|inclusion body
Ptp.6881.1.S1_at	A	A1TS	POPTR_0010s15800	POPTR_0010s15800 (10)	scaffold_10:14917664-14918784(+) (10)	NA	Q9SEE5	Galactokinase	AT3G06580.1	Mevalonate/galactokinase family protein 	LOC_Os03g61710.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr8g136890.1	GHMP kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.6882.1.A1_s_at	A	A1TS	POPTR_0009s05760	POPTR_0009s05760 (11)	scaffold_9:5766854-5767203(-) (11)	NA	Q9LXV5	Nuclear transcription factor Y subunit A-1	AT5G12840.4	"nuclear factor Y, subunit A1 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.6883.1.A1_at	A	A1TS	POPTR_0009s16540	POPTR_0009s16540 (11)	scaffold_9:12537426-12537958(-) (11)	NA	P27788	"Ferredoxin-3, chloroplastic"	AT2G27510.1	ferredoxin 3 	LOC_Os03g61960.2	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr2g107770.1	"Ferredoxin [2Fe-2S], plant "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.6884.1.S1_at	A	A1TS	POPTR_0010s17940	POPTR_0010s17940 (11)	scaffold_10:16363081-16364568(-) (11)	NA	Q92620	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	AT5G13010.1	RNA helicase family protein 	LOC_Os07g32430.1	"pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed"	Medtr2g117980.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.6885.1.S1_at	A	A1TS	POPTR_0004s13690	POPTR_0004s13690 (11)	scaffold_4:14106705-14108688(-) (11)	NA	P19951	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os04g33750.1	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6887.1.S1_s_at	A	A1TS	POPTR_0014s14580	POPTR_0014s14580 (11)	scaffold_14:10663816-10664275(-) (11)	NA	P73530	30S ribosomal protein S1 homolog A	AT3G23700.1	Nucleic acid-binding proteins superfamily 	LOC_Os03g62780.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g104300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
Ptp.6888.1.S1_s_at	A	A1TS	POPTR_0008s13440	POPTR_0008s13440 (11)	scaffold_8:8833765-8834859(-) (11)	NA	Q8GUU2	E3 ubiquitin protein ligase RIE1	AT1G68070.1	"Zinc finger, C3HC4 type (RING finger) family protein "	LOC_Os04g48050.1	"RING zinc finger protein, putative, expressed"	Medtr4g157080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6889.1.A1_at	A	A1TS	POPTR_0014s15490	POPTR_0014s15490 (11)	scaffold_14:11541929-11542743(+) (11)	NA	NA	NA	AT1G05060.1	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g13220.1	expressed protein	Medtr5g093280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6890.1.S1_s_at	A	A1TS	POPTR_0006s01620	POPTR_0006s01620 (11)	scaffold_6:996113-996592(+) (11)	NA	O22193	U-box domain-containing protein 4	AT4G16490.1	ARM repeat superfamily protein 	LOC_Os07g39590.1	"spotted leaf 11, putative, expressed"	Medtr2g030200.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6892.1.S1_at	A	A1TS	POPTR_0001s11030	POPTR_0001s11030 (9)	scaffold_1:8554741-8555332(+) (9)	NA	Q8H0V6	ABC transporter F family member 3	AT1G64550.1	general control non-repressible 3 	LOC_Os02g58020.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g109230.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.6893.1.S1_at	A	A1TS	POPTR_0005s24300	POPTR_0005s24300 (11)	scaffold_5:22899476-22899563(-) (11)	NA	Q9M2J9	Bet1-like SNARE 1-1	AT3G58170.1	BET1P/SFT1P-like protein 14A 	LOC_Os02g57510.2	"SNARE domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6893.1.S1_s_at	A	A1TS	POPTR_0005s24300	POPTR_0005s24300 (11)	scaffold_5:22899584-22899703(-) (11)	NA	Q9M2J9	Bet1-like SNARE 1-1	AT3G58170.1	BET1P/SFT1P-like protein 14A 	LOC_Os02g57510.2	"SNARE domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6893.2.S1_s_at	A	A1MS	POPTR_0005s24300	POPTR_0005s24300 (10)	scaffold_5:22899736-22903064(-) (10)	NA	Q9M2J9	Bet1-like SNARE 1-1	AT3G58170.1	BET1P/SFT1P-like protein 14A 	LOC_Os02g57510.2	"SNARE domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6894.1.S1_at	A	A1MS	POPTR_0007s08080	POPTR_0007s08080 (10)	scaffold_7:6574301-6574827(-) (10)	NA	Q9SMZ2	Pentatricopeptide repeat-containing protein At4g33170	AT1G16480.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os11g45410.1	conserved hypothetical protein	Medtr3g028620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6895.1.S1_at	A	A1TS	POPTR_0017s12680	POPTR_0017s12680 (10)	scaffold_17:12879329-12879839(-) (10)	NA	NA	NA	AT3G29310.1	calmodulin-binding protein-related 	LOC_Os05g43670.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr7g012190.1	IQ calmodulin-binding region 	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.6896.1.A1_at	A	A1TS	POPTR_0004s20530	POPTR_0004s20530 (11)	scaffold_4:20051468-20051901(+) (11)	NA	Q6P8B3	Speckle-type POZ protein	AT3G03740.1	BTB-POZ and MATH domain 4 	LOC_Os03g57854.1	"MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr5g094610.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
Ptp.6897.1.S1_s_at	A	A1TS	POPTR_0003s16420	POPTR_0003s16420 (11)	scaffold_3:15999249-15999427(-) (11)	NA	NA	NA	AT2G33510.1	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). 	LOC_Os02g31140.1	"major ampullate spidroin 2-2, putative, expressed"	Medtr7g005170.1	WW/Rsp5/WWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6898.1.A1_at	A	A1TS	POPTR_0003s02550	POPTR_0003s02550 (11)	scaffold_3:2651809-2652195(+) (11)	NA	Q9S793	Protein FAR1-RELATED SEQUENCE 8	AT1G80010.1	FAR1-related sequence 8 	LOC_Os02g39540.1	"transposon protein, putative, unclassified, expressed"	Medtr2g034270.1	"FAR1; Heavy metal transport/detoxification protein; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.6899.1.S1_at	A	A1TS	POPTR_0009s09330	POPTR_0009s09330 (10)	scaffold_9:8303808-8304144(+) (10)	NA	Q9UBN7	Histone deacetylase 6	AT2G14830.2	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os12g32374.1	"histone deacetylase 6, putative, expressed"	Medtr5g005200.1	"Histone deacetylase superfamily; Zinc finger, UBP-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.6900.1.S1_s_at	A	A1TS	POPTR_0001s06750	POPTR_0001s06750 (10)	scaffold_1:5182157-5182416(+) (11)	NA	Q0WVD6	Probable protein arginine N-methyltransferase 3	AT3G12270.1	protein arginine methyltransferase 3 	LOC_Os07g44640.1	"ZOS7-13 - C2H2 zinc finger protein, expressed"	Medtr3g005500.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.6901.1.S1_at	A	A1TS	POPTR_0011s11040	POPTR_0011s11040 (11)	scaffold_11:13728685-13728826(+) (11)	NA	NA	NA	AT1G16916.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6901.1.S1_s_at	A	A1TS	POPTR_0011s11040	POPTR_0011s11040 (11)	scaffold_11:13728451-13728684(+) (11)	NA	NA	NA	AT1G16916.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6902.1.S1_at	A	A1TS	POPTR_0001s30460	POPTR_0001s30460 (11)	scaffold_1:28913466-28913697(-) (11)	NA	O74503	Upstream activation factor subunit spp27	AT2G14880.1	SWIB/MDM2 domain superfamily protein 	LOC_Os12g32280.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6902.1.S1_x_at	A	A1TS	POPTR_0001s30460	POPTR_0001s30460 (11)	scaffold_1:28913466-28913697(-) (11)	NA	O74503	Upstream activation factor subunit spp27	AT2G14880.1	SWIB/MDM2 domain superfamily protein 	LOC_Os12g32280.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6904.1.S1_at	A	A1TS	POPTR_0015s04510	POPTR_0015s04510 (11)	scaffold_15:4632242-4632422(-) (11)	NA	P50699	Thaumatin-like protein	AT1G73620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os06g47600.1	"thaumatin family domain containing protein, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6904.1.S1_s_at	A	A1TS	POPTR_0015s04510	POPTR_0015s04510 (11)	scaffold_15:4631987-4632333(-) (11)	NA	P50699	Thaumatin-like protein	AT1G73620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os06g47600.1	"thaumatin family domain containing protein, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6905.1.A1_s_at	A	A1TS	POPTR_0001s44050	POPTR_0001s44050 (9)	scaffold_1:44504508-44507783(+) (11)	NA	Q43472	Glycine-rich RNA-binding protein blt801	AT5G54580.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g04440.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g118370.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.6906.1.A1_x_at	A	A1TS	POPTR_0001s37560	POPTR_0001s37560 (11)	scaffold_1:36537690-36537786(-) (11)	NA	NA	NA	AT3G13175.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G16400.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.691.1.S1_s_at	A	A1TS	POPTR_0019s13040	POPTR_0019s13040 (11)	scaffold_19:14053882-14054439(+) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6910.1.S1_at	A	A1TS	POPTR_0009s14560	POPTR_0009s14560 (9)	scaffold_9:11387547-11388426(+) (9)	NA	NA	NA	AT4G38380.1	MATE efflux family protein 	LOC_Os09g37610.1	"MATE efflux protein, putative, expressed"	Medtr5g106650.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
Ptp.6911.1.S1_s_at	A	A1TS	POPTR_0010s23720	POPTR_0010s23720 (11)	scaffold_10:20224397-20224545(+) (11)	NA	P93354	Histone H2B	AT3G53650.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.6915.1.S1_at	A	A1TS	POPTR_0012s03000	POPTR_0012s03000 (11)	scaffold_12:2424749-2424971(-) (11)	NA	NA	NA	AT5G53650.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr3g123140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6917.1.A1_s_at	A	A1TS	POPTR_0015s09620	POPTR_0015s09620 (11)	scaffold_15:10790123-10790594(-) (11)	NA	P49689	40S ribosomal protein S30	AT5G56670.1	Ribosomal protein S30 family protein 	LOC_Os06g07580.2	expressed protein	Medtr5g012690.1	Ribosomal protein S30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6919.1.S1_x_at	A	A1TS	POPTR_0005s08250	POPTR_0005s08250 (11)	scaffold_5:5682920-5684762(+) (11)	NA	O49884	60S ribosomal protein L30	AT1G77940.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.692.1.A1_at	A	A1TS	POPTR_0010s01710	POPTR_0010s01710 (11)	scaffold_10:1905233-1906258(+) (11)	NA	Q922S8	Kinesin-like protein KIF2C	AT3G16630.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g06280.2	"ATKINESIN-13A/KINESIN-13A, putative, expressed"	Medtr8g138640.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.6921.1.S1_s_at	A	A1TS	POPTR_0002s04410	POPTR_0002s04410 (11)	scaffold_2:2762889-2763293(-) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.6922.1.S1_s_at	A	A1TS	POPTR_0008s23110	POPTR_0008s23110 (11)	scaffold_8:18365739-18366163(-) (11)	NA	O50001	Major allergen Pru ar 1	NA	NA	LOC_Os03g18850.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.6923.1.S1_a_at	A	A1TS	POPTR_0001s26230	POPTR_0001s26230 (11)	scaffold_1:25286379-25288130(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g104160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6926.1.A1_at	A	A1TS	POPTR_0001s28020	POPTR_0001s28020 (11)	scaffold_1:26822913-26825032(-) (11)	NA	Q55DL0	Dihydropyrimidinase	AT5G12200.1	pyrimidine 2 	LOC_Os01g59340.3	"dihydropyrimidinase, putative, expressed"	Medtr5g096300.1	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
Ptp.6927.1.A1_at	A	A1TS	POPTR_0005s07440	POPTR_0005s07440 (11)	scaffold_5:5087266-5087408(+) (11)	NA	O14327	Polyadenylate-binding protein 2	AT5G10350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g120660.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.6928.1.A1_at	A	A1TS	POPTR_0009s17050	POPTR_0009s17050 (11)	scaffold_9:12842622-12843029(+) (11)	NA	Q9SZM1	Expansin-A20	AT4G38210.1	expansin A20 	LOC_Os06g41700.1	"expansin precursor, putative, expressed"	Medtr5g083140.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6928.2.S1_s_at	A	A1TS	POPTR_0008s10620	POPTR_0008s10620 (11)	scaffold_8:6647541-6648064(-) (11)	NA	P24068	Ocs element-binding factor 1	AT3G62420.1	basic region/leucine zipper motif 53 	LOC_Os12g37415.1	expressed protein	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.6929.2.S1_a_at	A	A1TS	POPTR_0011s01520	POPTR_0011s01520 (11)	scaffold_11:1064891-1065327(+) (11)	NA	NA	NA	AT4G04330.1	Chaperonin-like RbcX protein 	LOC_Os08g32930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.693.1.A1_at	A	A1TS	POPTR_0006s09370	POPTR_0006s09370 (9)	scaffold_6:6883697-6884023(-) (9)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G02010.1	RHO guanyl-nucleotide exchange factor 7 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
Ptp.6930.1.S1_at	A	A1TS	POPTR_0018s05010	POPTR_0018s05010 (11)	scaffold_18:4438339-4439304(-) (11)	NA	Q8UVD9	Far upstream element-binding protein 2	AT2G25970.1	KH domain-containing protein 	LOC_Os02g13130.1	"KH domain-containing protein, putative, expressed"	Medtr1g020830.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.6931.1.S1_s_at	A	A1TS	POPTR_0014s03630	POPTR_0014s03630 (11)	scaffold_14:2896597-2896911(+) (11)	NA	NA	NA	AT2G26500.1	"cytochrome b6f complex subunit (petM), putative "	LOC_Os03g55720.2	"cytochrome b6f complex subunit, putative, expressed"	NA	NA	NA	NA	GO:0009512|cytochrome b6f complex
Ptp.6932.1.A1_s_at	A	A1TS	POPTR_0001s35760	POPTR_0001s35760 (11)	scaffold_1:34111150-34112198(+) (11)	NA	Q8VYR5	"Pentatricopeptide repeat-containing protein At4g35850, mitochondrial"	AT4G35850.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g05320.1	"PPR repeat domain containing protein, putative, expressed"	Medtr6g022770.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6933.1.S1_s_at	A	A1TS	POPTR_0014s17730	POPTR_0014s17730 (9)	scaffold_14:14000337-14001610(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6941.2.S1_s_at	A	A1TS	POPTR_0003s16880	POPTR_0003s16880 (11)	scaffold_3:16397125-16399001(+) (11)	NA	NA	NA	AT1G27290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g32960.1	expressed protein	Medtr3g104180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6942.1.S1_a_at	A	A1TS	POPTR_0013s15500	POPTR_0013s15500 (11)	scaffold_13:15450247-15450458(-) (11)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.6942.2.S1_a_at	A	A1TS	POPTR_0013s15500	POPTR_0013s15500 (10)	scaffold_13:15450283-15450949(-) (10)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.6943.1.S1_at	A	A1TS	POPTR_0011s05620	POPTR_0011s05620 (11)	scaffold_11:5596813-5597208(-) (11)	NA	NA	NA	AT2G33847.2	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017890.1	"NFD6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6943.2.S1_at	A	A1TS	POPTR_0011s05620	POPTR_0011s05620 (11)	scaffold_11:5597480-5597958(-) (11)	NA	NA	NA	AT2G33847.2	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017890.1	"NFD6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6943.3.S1_a_at	A	A1TS	POPTR_0011s05620	POPTR_0011s05620 (11)	scaffold_11:5598431-5598570(-) (11)	NA	NA	NA	AT2G33847.2	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017890.1	"NFD6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6943.3.S1_at	A	A1TS	POPTR_0011s05620	POPTR_0011s05620 (11)	scaffold_11:5596464-5598332(-) (11)	NA	NA	NA	AT2G33847.2	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g017890.1	"NFD6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6945.1.S1_at	A	A1TS	POPTR_0019s08090	POPTR_0019s08090 (11)	scaffold_19:9510469-9511210(+) (11)	NA	O48965	Isopentenyl-diphosphate Delta-isomerase II	AT3G02780.1	isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 	LOC_Os05g34180.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr7g089700.1	"Isopentenyl-diphosphate delta-isomerase, type 1 "	NA	GO:0016787|hydrolase activity	NA
Ptp.6946.1.S1_s_at	A	A1TS	POPTR_0008s17100	POPTR_0008s17100 (11)	scaffold_8:11491005-11491247(-) (11)	NA	Q03389	Eukaryotic translation initiation factor 4E-2	AT5G35620.1	Eukaryotic initiation factor 4E protein 	LOC_Os10g32970.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr1g065250.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.6948.1.S1_at	A	A1TS	POPTR_0009s11240	POPTR_0009s11240 (11)	scaffold_9:9397970-9398330(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.695.1.S1_s_at	A	A1TS	POPTR_0012s04590	POPTR_0012s04590 (11)	scaffold_12:3908424-3909117(+) (11)	NA	Q9LV37	Mitogen-activated protein kinase 9	AT3G18040.1	MAP kinase 9 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.6950.1.S1_at	A	A1MS	POPTR_0009s09440	POPTR_0009s09440 (11)	scaffold_9:8356814-8357191(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6951.1.S1_at	A	A1TS	POPTR_0014s02920	POPTR_0014s02920 (11)	scaffold_14:2410231-2411444(-) (11)	NA	Q9C5C5	"Thioredoxin-like 4, chloroplastic"	AT1G07700.1	Thioredoxin superfamily protein 	LOC_Os02g35900.1	"thioredoxin, putative, expressed"	Medtr3g147750.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.6952.1.S1_at	A	A1TS	POPTR_0015s04470	POPTR_0015s04470 (10)	scaffold_15:4613539-4614009(-) (10)	NA	Q9LE22	Probable calcium-binding protein CML27	AT1G18210.2	Calcium-binding EF-hand family protein 	LOC_Os05g13580.1	"OsCML18 - Calmodulin-related calcium sensor protein, expressed"	Medtr4g155110.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6953.1.S1_at	A	A1TS	POPTR_0001s02630	POPTR_0001s02630 (10)	scaffold_1:2076683-2077265(-) (10)	NA	NA	NA	AT1G32560.1	"Late embryogenesis abundant protein, group 1 protein "	NA	NA	Medtr8g102760.1	Late embryogenesis abundant (LEA) group 1 	GO:0009790|embryonic development	NA	NA
Ptp.6956.1.S1_at	A	A1TS	POPTR_0002s02590	POPTR_0002s02590 (11)	scaffold_2:1490810-1491237(+) (11)	NA	P32295	Indole-3-acetic acid-induced protein ARG7	AT1G75580.1	SAUR-like auxin-responsive protein family  	LOC_Os02g24740.1	"OsSAUR9 - Auxin-responsive SAUR gene family member, expressed"	Medtr5g021770.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6957.1.S1_a_at	A	A1TS	POPTR_0005s24980	POPTR_0005s24980 (11)	scaffold_5:23371827-23372111(+) (11)	NA	Q940Z1	Pentatricopeptide repeat-containing protein At1g19525	AT1G19520.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os02g39820.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g112280.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6958.1.S1_s_at	A	A1TS	POPTR_0014s14300	POPTR_0014s14300 (10)	scaffold_14:10457329-10457862(-) (10)	NA	Q0WW21	Anthocyanin 5-O-glucosyltransferase	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6959.1.S1_at	A	A1TS	POPTR_0015s12260	POPTR_0015s12260 (11)	scaffold_15:12596406-12596884(+) (11)	NA	NA	NA	AT4G17600.1	Chlorophyll A-B binding family protein 	LOC_Os02g03330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.696.1.A1_at	A	A1TS	POPTR_0010s17160	POPTR_0010s17160 (11)	scaffold_10:15877197-15878216(+) (11)	NA	NA	NA	AT1G13990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3110 (InterPro:IPR021503); Has 25 Blast hits to 25 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g07190.1	expressed protein	Medtr5g045550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6962.1.S1_at	A	A1TS	POPTR_0005s08150	POPTR_0005s08150 (11)	scaffold_5:5607285-5607628(+) (11)	NA	Q9SCY3	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplastic"	AT4G39710.1	FK506-binding protein 16-2 	LOC_Os02g51570.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g140460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.6962.1.S1_s_at	A	A1TS	POPTR_0005s08150	POPTR_0005s08150 (11)	scaffold_5:5606635-5607533(+) (11)	NA	Q9SCY3	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplastic"	AT4G39710.1	FK506-binding protein 16-2 	LOC_Os02g51570.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g140460.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.6965.1.S1_s_at	A	A1TS	POPTR_0010s19380	POPTR_0010s19380 (11)	scaffold_10:17316334-17316528(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6966.1.S1_s_at	A	A1TS	POPTR_0017s08890	POPTR_0017s08890 (11)	scaffold_17:7517262-7518371(-) (11)	NA	NA	NA	AT5G14030.4	translocon-associated protein beta (TRAPB) family protein 	LOC_Os01g01307.1	"translocon-associated protein beta domain containing protein, expressed"	Medtr7g096580.1	Translocon-associated beta 	NA	NA	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
Ptp.6967.1.S1_x_at	A	A1TS	POPTR_0012s08850	POPTR_0012s08850 (11)	scaffold_12:9921475-9922063(+) (11)	NA	P49689	40S ribosomal protein S30	AT5G56670.1	Ribosomal protein S30 family protein 	LOC_Os06g07580.2	expressed protein	Medtr5g012690.1	Ribosomal protein S30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.6968.1.A1_at	A	A1TS	POPTR_0009s13380	POPTR_0009s13380 (11)	scaffold_9:10661068-10661603(-) (11)	NA	Q9SLF3	"Translocase of chloroplast 132, chloroplastic"	AT3G16620.1	translocon outer complex protein 120 	LOC_Os10g40110.1	"GTP binding protein, putative, expressed"	Medtr2g130100.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.6969.1.S1_at	A	A1TS	POPTR_0008s11120	POPTR_0008s11120 (9)	scaffold_8:7025420-7025511(-) (9)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os09g29930.2	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.697.1.A1_s_at	A	A1TS	POPTR_0002s14200	POPTR_0002s14200 (11)	scaffold_2:10523701-10523832(+) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os02g43930.1	"chaperone protein dnaJ, putative, expressed"	Medtr8g006170.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.6971.1.S1_at	A	A1MS	POPTR_0001s04780	POPTR_0001s04780 (9)	scaffold_1:3678944-3679366(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6973.1.S1_s_at	A	A1TS	POPTR_0010s07710	POPTR_0010s07710 (11)	scaffold_10:8695466-8695986(-) (11)	NA	NA	NA	AT4G26740.1	seed gene 1 	LOC_Os04g43170.1	"caleosin related protein, putative, expressed"	AC233676_20.1	Caleosin related AC233676.2 83014-79445 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6974.1.S1_at	A	A1TS	POPTR_0016s09350	POPTR_0016s09350 (11)	scaffold_16:7350050-7350283(+) (11)	NA	Q9LVV5	"Thylakoid lumenal 15.0 kDa protein 2, chloroplastic"	AT5G52970.1	thylakoid lumen 15.0 kDa protein 	LOC_Os07g34950.1	"uncharacterized membrane protein, putative, expressed"	Medtr5g038350.1	"Uncharacterized membrane protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6976.1.S1_at	A	A1MS	POPTR_0001s12360	POPTR_0001s12360 (9)	scaffold_1:9571642-9574868(-) (9)	NA	NA	NA	AT5G44650.1	Encodes a chloroplast protein that induces tolerance to multiple environmental stresses and reduces photooxidative damage. 	LOC_Os01g58470.1	expressed protein	Medtr8g084190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6977.1.S1_s_at	A	A2TS	POPTR_0019s01840	POPTR_0019s01850 (11)//POPTR_0019s01840 (11)	scaffold_19:1590929-1591305(+) (11)//scaffold_19:1606860-1607240(+) (11)	NA	P09800	Legumin B	AT5G44120.3	RmlC-like cupins superfamily protein 	LOC_Os01g55690.1	"glutelin, putative, expressed"	Medtr1g086770.1	11-S plant seed storage protein 	NA	GO:0045735|nutrient reservoir activity	NA
Ptp.6978.1.A1_at	A	A1TS	POPTR_0012s08690	POPTR_0012s08690 (9)	scaffold_12:9800735-9801270(+) (9)	NA	NA	NA	AT5G63130.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os11g25780.1	"PB1 domain containing protein, expressed"	Medtr3g114750.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6979.1.S1_s_at	A	A1TS	POPTR_0002s01290	POPTR_0002s01290 (11)	scaffold_2:677455-677784(+) (11)	NA	NA	NA	AT1G76240.1	Arabidopsis protein of unknown function (DUF241) 	LOC_Os06g50980.1	conserved hypothetical protein	Medtr5g023250.1	Arabidopsis conserved protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.698.1.A1_at	A	A1TS	POPTR_0011s01570	POPTR_0011s01570 (11)	scaffold_11:1101151-1101605(-) (11)	NA	NA	NA	AT4G22140.2	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os09g21770.1	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
Ptp.6981.1.S1_at	A	A1TS	POPTR_0014s05870	POPTR_0014s05870 (9)	scaffold_14:4391970-4392344(+) (10)	NA	Q8RW93	Putative lipid-binding protein At4g00165	AT4G00165.2	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g01320.1	"LTPL116 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr1g014100.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6982.1.S1_s_at	A	A1TS	POPTR_0016s00910	POPTR_0016s00910 (10)	scaffold_16:351098-351831(-) (11)	NA	NA	NA	AT3G13130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6983.1.S1_s_at	A	A1TS	POPTR_0010s15220	POPTR_0010s15220 (10)	scaffold_10:14560962-14561671(+) (10)	NA	NA	NA	AT4G16160.2	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os03g19290.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr8g137810.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.6984.1.S1_at	A	A1TS	POPTR_0001s08230	POPTR_0001s08230 (11)	scaffold_1:6283583-6286725(-) (11)	NA	Q55720	Ycf49-like protein	AT4G22830.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2499 (InterPro:IPR019634); Has 319 Blast hits to 317 proteins in 103 species: Archae - 0; Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). 	LOC_Os04g31010.2	expressed protein	Medtr5g011600.1	"Ycf49-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6985.1.S1_at	A	A1TS	POPTR_0010s07470	POPTR_0010s07470 (9)	scaffold_10:8517688-8518280(-) (9)	NA	NA	NA	AT1G04560.1	AWPM-19-like family protein 	LOC_Os07g24000.1	"AWPM-19-like membrane family protein, putative, expressed"	Medtr6g084000.1	AWPM-19-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6986.1.S1_at	A	A1MS	POPTR_0001s19160	POPTR_0001s19160 (10)	scaffold_1:16584087-16584643(-) (10)	NA	NA	NA	AT5G56550.1	oxidative stress 3 	LOC_Os02g13370.1	expressed protein	Medtr4g160080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.699.1.S1_at	A	A1MS	POPTR_0002s16470	POPTR_0002s16470 (11)	scaffold_2:12327431-12327970(-) (11)	NA	O46036	C-terminal-binding protein	AT1G01510.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g38900.1	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr7g088700.1	"D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0048037|cofactor binding"	NA
Ptp.6992.1.S1_at	A	A1TS	POPTR_0006s12610	POPTR_0006s12610 (11)	scaffold_6:9767897-9769112(-) (11)	NA	B0BLT0	Zinc finger protein 593	AT2G36930.1	zinc finger (C2H2 type) family protein 	LOC_Os08g45040.1	"zinc finger protein 593, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
Ptp.6994.1.S1_s_at	A	A1TS	POPTR_0009s01580	POPTR_0009s01580 (11)	scaffold_9:2054700-2054979(+) (11)	NA	Q6P0I8	Exosome complex exonuclease MTR3	AT4G27490.1	3'-5'-exoribonuclease family protein 	LOC_Os03g62720.1	"exosome complex exonuclease, putative, expressed"	AC233683_7.2	3 exoribonuclease AC233683.2 46787-40903 F EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
Ptp.6996.1.S1_at	A	A1TS	POPTR_0006s10130	POPTR_0006s10130 (10)	scaffold_6:7536075-7536174(+) (10)	NA	Q39963	Probable pyridoxal biosynthesis protein PDX1	AT5G01410.1	Aldolase-type TIM barrel family protein 	LOC_Os07g01020.1	"SOR/SNZ family protein, putative, expressed"	Medtr2g021510.1	Vitamin B6 biosynthesis protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.6999.1.S1_at	A	A1TS	POPTR_0002s15180	POPTR_0002s15180 (11)	scaffold_2:11341125-11341583(+) (11)	NA	NA	NA	AT1G08500.1	early nodulin-like protein 18 	LOC_Os12g26880.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr7g083320.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.7.1.S1_at	A	A1TS	POPTR_0002s03990	POPTR_0002s03990 (11)	scaffold_2:2502609-2504460(+) (11)	NA	Q9ZSK2	Actin-depolymerizing factor 6	AT2G31200.1	actin depolymerizing factor 6 	LOC_Os12g43340.1	"actin-depolymerizing factor, putative, expressed"	AC233662_56.1	"Actin-binding, cofilin/tropomyosin type AC233662.1 257418-259371 F EGN_Mt090430 200"	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.70.1.A1_at	A	A1TS	POPTR_0018s08910	POPTR_0018s08910 (11)	scaffold_18:9821119-9822471(-) (11)	NA	P28734	"Aspartate aminotransferase, cytoplasmic"	AT5G19550.1	aspartate aminotransferase 2 	LOC_Os01g55540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.700.1.A1_at	A	A1TS	POPTR_0004s02940	POPTR_0004s02940 (11)	scaffold_4:1966093-1966500(+) (11)	NA	Q9LK57	"Pentatricopeptide repeat-containing protein At3g13160, mitochondrial"	AT3G13160.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g57630.3	"pentatricopeptide containing protein, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7000.1.S1_at	A	A1TS	POPTR_0015s05550	POPTR_0015s05550 (9)	scaffold_15:5877567-5878527(-) (9)	NA	Q6EU14	Protein argonaute 1A	AT1G48410.1	Stabilizer of iron transporter SufD / Polynucleotidyl transferase 	LOC_Os02g45070.1	"PINHEAD, putative, expressed"	Medtr8g118920.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7001.1.S1_at	A	A3TS	POPTR_0019s12380	POPTR_0019s12380 (11)//POPTR_0019s12390 (11)//POPTR_0019s12370 (10)	scaffold_19:13410876-13410909(-) (10)//scaffold_19:13421732-13421766(-) (11)//scaffold_19:13434869-13434903(-) (11)	NA	P27054	Endochitinase PR4	AT3G54420.1	homolog of carrot EP3-3 chitinase 	LOC_Os04g41680.1	"CHIT3 - Chitinase family protein precursor, expressed"	Medtr2g120640.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
Ptp.7006.1.S1_at	A	A1TS	POPTR_0011s14360	POPTR_0011s14360 (10)	scaffold_11:16806499-16806916(-) (10)	NA	Q8W4Z5	UPF0497 membrane protein f16	AT1G17200.1	Uncharacterised protein family (UPF0497) 	LOC_Os04g21320.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr5g084410.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7012.1.S1_at	A	A1TS	POPTR_0010s10600	POPTR_0010s10600 (11)	scaffold_10:11088767-11089299(+) (11)	NA	Q93VR4	MLP-like protein 423	AT1G24020.2	MLP-like protein 423 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr5g036270.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.7013.1.S1_at	A	A1TS	POPTR_0001s03660	POPTR_0001s03660 (9)	scaffold_1:2917490-2917768(-) (9)//scaffold_1:2933162-2933440(-) (9)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G15950.1	cinnamoyl coa reductase 1 	LOC_Os08g34280.1	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.7013.2.S1_at	A	A1TS	POPTR_0001s14970	POPTR_0001s14970 (11)	scaffold_1:11790092-11790270(+) (11)//scaffold_1:11806168-11806342(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G15950.1	cinnamoyl coa reductase 1 	LOC_Os08g34280.1	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.7015.1.S1_s_at	A	A1TS	POPTR_0001s41340	POPTR_0001s41340 (11)	scaffold_1:40974340-40975009(+) (11)	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g58170.1	"stem-specific protein TSJT1, putative, expressed"	Medtr2g014830.1	"Stem-specific protein TSJT1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7016.1.S1_at	A	A1TS	POPTR_0002s24680	POPTR_0002s24680 (10)	scaffold_2:21973267-21973535(+) (10)	NA	Q8GYN5	RPM1-interacting protein 4	AT3G25070.1	RPM1 interacting protein 4 	LOC_Os03g63140.2	"nitrate-induced NOI protein, expressed"	Medtr2g029230.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7017.1.S1_a_at	A	A1TS	POPTR_0017s12080	POPTR_0017s12080 (11)	scaffold_17:12238195-12238731(+) (11)	NA	Q93ZL5	Dof zinc finger protein DOF5.2	AT5G39660.2	cycling DOF factor 2 	LOC_Os03g07360.1	expressed protein	Medtr7g010180.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.7018.1.S1_at	A	A1TS	POPTR_0011s17250	POPTR_0011s17250 (11)	scaffold_11:18848692-18849214(+) (11)	NA	Q9FH13	Regulator of ribonuclease-like protein 3	AT5G56260.1	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os02g52450.3	"regulator of ribonuclease, putative, expressed"	Medtr2g010880.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7019.1.S1_at	A	A1TS	POPTR_0017s11430	POPTR_0017s11430 (9)	scaffold_17:11186515-11186547(-) (9)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT3G01280.1	voltage dependent anion channel 1 	LOC_Os09g19734.3	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr7g008680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.7019.1.S1_s_at	A	A1TS	POPTR_0017s11430	POPTR_0017s11430 (11)	scaffold_17:11186406-11186736(-) (11)	NA	P42055	Mitochondrial outer membrane protein porin of 34 kDa	AT3G01280.1	voltage dependent anion channel 1 	LOC_Os09g19734.3	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr7g008680.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.702.1.S1_a_at	A	A1TS	POPTR_0001s13890	POPTR_0001s13890 (11)	scaffold_1:10947232-10947279(-) (11)	NA	A2YGR5	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7021.1.S1_s_at	A	A1TS	POPTR_0016s05190	POPTR_0016s05190 (11)	scaffold_16:3149632-3150054(+) (11)	NA	NA	NA	AT2G42310.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g31260.1	expressed protein	Medtr1g071470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7024.1.S1_s_at	A	A1TS	POPTR_0007s05380	POPTR_0007s05380 (11)	scaffold_7:3474125-3477447(-) (11)	NA	Q9FJP3	"50S ribosomal protein L29, chloroplastic"	AT5G65220.1	Ribosomal L29 family protein  	LOC_Os02g51790.1	"ribosomal protein L29, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7025.3.S1_s_at	A	A1TS	POPTR_0008s01770	POPTR_0008s01770 (11)	scaffold_8:838756-838790(-) (11)	NA	NA	NA	AT5G04750.1	"F1F0-ATPase inhibitor protein, putative "	LOC_Os02g33070.1	expressed protein	AC233577_44.1	hypothetical protein AC233577.5 201575-203831 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7026.1.S1_s_at	A	A3TS	POPTR_0015s12680	POPTR_0015s12680 (11)//POPTR_0015s15850 (11)//POPTR_0015s15830 (10)	scaffold_15:12910100-12910343(+) (11)//scaffold_15:15021153-15026577(-) (11)//scaffold_15:15026415-15026658(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr2g008080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7027.1.S1_at	A	A1TS	POPTR_0018s00800	POPTR_0018s00800 (9)	scaffold_18:697529-697918(-) (10)	NA	Q8GZ63	Pentatricopeptide repeat-containing protein At5g25630	AT5G25630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g12810.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g009410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.703.1.S1_at	A	A1TS	POPTR_0002s11380	POPTR_0002s11380 (10)	scaffold_2:8413653-8414203(+) (10)	NA	O69230	"Endo-1,4-beta-xylanase C"	AT1G58370.1	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein 	LOC_Os07g27320.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr3g163350.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.7031.1.S1_at	A	A1TS	POPTR_0008s04870	POPTR_0008s04870 (11)	scaffold_8:2819247-2819993(-) (11)	NA	Q9M5L0	60S ribosomal protein L35	AT2G39390.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7034.1.S1_at	A	A1TS	POPTR_0014s13640	POPTR_0014s13640 (10)	scaffold_14:10008472-10009266(+) (10)	NA	Q9XIW1	Probable xyloglucan endotransglucosylase/hydrolase protein 5	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099550.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.7035.1.S1_at	A	A1TS	POPTR_0018s01280	POPTR_0018s01280 (11)	scaffold_18:1247627-1248586(+) (11)	NA	Q6GP53	"N-alpha-acetyltransferase 50, NatE catalytic subunit"	AT5G11340.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os01g42470.2	"acetyltransferase, GNAT family, putative, expressed"	Medtr5g106430.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.704.1.S1_a_at	A	A1TS	POPTR_0007s07820	POPTR_0007s07820 (11)	scaffold_7:6247124-6247264(-) (11)	NA	NA	NA	AT1G50120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os06g41440.2	expressed protein	Medtr8g009320.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.704.2.S1_at	A	A1MS	POPTR_0007s07820	POPTR_0007s07820 (9)	scaffold_7:6247287-6247572(-) (9)	NA	NA	NA	AT1G50120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os06g41440.2	expressed protein	Medtr8g009320.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7040.1.S1_at	A	A1TS	POPTR_0005s11430	POPTR_0005s11430 (10)	scaffold_5:8258347-8259314(-) (10)	NA	Q42564	"L-ascorbate peroxidase 3, peroxisomal"	AT4G35000.1	ascorbate peroxidase 3 	LOC_Os04g14680.1	"OsAPx3 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr5g022420.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.7044.1.S1_at	A	A1TS	POPTR_0014s02960	POPTR_0014s02960 (11)	scaffold_14:2433072-2433640(+) (11)	NA	P27521	"Chlorophyll a-b binding protein 4, chloroplastic"	AT1G45474.2	photosystem I light harvesting complex gene 5 	LOC_Os02g52650.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr3g147810.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.7045.1.S1_a_at	A	A1TS	POPTR_0004s06640	POPTR_0004s06640 (11)	scaffold_4:5325161-5325220(-) (11)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr3g137660.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.7045.2.S1_at	A	A1TS	POPTR_0004s06640	POPTR_0004s06640 (10)	scaffold_4:5325124-5325434(-) (10)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr3g137660.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.7047.1.S1_at	A	A1TS	POPTR_0015s12900	POPTR_0015s12900 (11)	scaffold_15:13077522-13077982(-) (11)	NA	NA	NA	AT5G52420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g40040.1	expressed protein	Medtr1g126770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7048.1.A1_s_at	A	A1TS	POPTR_0015s15410	POPTR_0015s15410 (10)	scaffold_15:14701230-14702644(-) (11)	NA	Q93VA3	"Cytochrome c6, chloroplastic"	AT5G45040.1	Cytochrome c 	LOC_Os07g38000.1	"cytochrome c, putative, expressed"	Medtr4g114590.1	"Cytochrome c, class I "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.705.1.A1_at	A	A1TS	POPTR_0006s07380	POPTR_0006s07380 (9)	scaffold_6:5320578-5321782(+) (9)	NA	Q9LU72	Probable inactive purple acid phosphatase 28	AT5G57140.1	purple acid phosphatase 28 	LOC_Os06g48570.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr2g042800.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
Ptp.7050.1.S1_s_at	A	A1TS	POPTR_0008s10250	POPTR_0008s10250 (11)	scaffold_8:6421824-6422139(+) (11)	NA	P07728	Glutelin type-A 1	AT2G28680.1	RmlC-like cupins superfamily protein 	LOC_Os01g74480.1	"cupin domain containing protein, expressed"	Medtr4g098190.1	Cupin 	NA	GO:0045735|nutrient reservoir activity	NA
Ptp.7052.1.A1_a_at	A	A1TS	POPTR_0013s03930	POPTR_0013s03930 (11)	scaffold_13:2580982-2581149(+) (11)	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117520.1	"zinc finger family protein {Arabid, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7052.1.A1_at	A	A1TS	POPTR_0013s03930	POPTR_0013s03930 (11)	scaffold_13:2579781-2581308(+) (11)	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117520.1	"zinc finger family protein {Arabid, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7052.2.A1_at	A	A1MS	POPTR_0013s03930	POPTR_0013s03930 (11)	scaffold_13:2580703-2580940(+) (11)	NA	Q94AY3	E3 ubiquitin protein ligase DRIP2	AT2G30580.1	DREB2A-interacting protein 2 	LOC_Os03g43360.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g117520.1	"zinc finger family protein {Arabid, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7055.1.S1_at	A	A1TS	POPTR_0002s22920	POPTR_0002s22920 (11)	scaffold_2:20070545-20073317(-) (11)	NA	P33490	Auxin-binding protein T85	AT4G02980.1	endoplasmic reticulum auxin binding protein 1 	LOC_Os12g34450.1	"auxin-binding protein 4 precursor, putative, expressed"	Medtr1g111460.1	Auxin-binding protein 	NA	GO:0004872|receptor activity	GO:0071212|subsynaptic reticulum||GO:0005788|endoplasmic reticulum lumen
Ptp.7058.1.S1_at	A	A1TS	POPTR_0001s33720	POPTR_0001s33720 (9)	scaffold_1:31894856-31897783(-) (9)	NA	NA	NA	AT3G27050.1	unknown protein; Has 43 Blast hits to 43 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os11g29700.2	expressed protein	Medtr1g068130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7060.1.A1_at	A	A1MS	POPTR_0002s08710	POPTR_0002s08710 (11)	scaffold_2:6115505-6117312(+) (11)	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7060.1.A1_s_at	A	A1MS	POPTR_0002s08710	POPTR_0002s08710 (11)	scaffold_2:6117112-6117251(+) (11)	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7060.1.A1_x_at	A	A1MS	POPTR_0002s08710	POPTR_0002s08710 (11)	scaffold_2:6115563-6117324(+) (11)	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7061.1.S1_s_at	A	A1MS	POPTR_0015s11800	POPTR_0015s11800 (11)	scaffold_15:12326052-12326174(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7062.1.S1_at	A	A1TS	POPTR_0007s07300	POPTR_0007s07300 (11)	scaffold_7:5600706-5601162(-) (11)//scaffold_7:5637105-5644047(-) (9)	NA	O81974	Cytochrome P450 71D8	AT3G26300.1	"cytochrome P450, family 71, subfamily B, polypeptide 34 "	LOC_Os09g10340.1	"cytochrome P450, putative, expressed"	Medtr5g102030.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.7063.1.S1_s_at	A	A1TS	POPTR_0008s17140	POPTR_0008s17140 (11)	scaffold_8:11516648-11518265(+) (11)	POPTR_0010s07660 (7)	O22785	Pre-mRNA-processing factor 19 homolog 2	AT2G33340.2	MOS4-associated  complex 3B 	LOC_Os10g32880.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g065090.1	U box; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7063.2.S1_at	A	A1TS	POPTR_0008s17140	POPTR_0008s17140 (11)	scaffold_8:11519399-11522148(+) (11)	NA	O22785	Pre-mRNA-processing factor 19 homolog 2	AT2G33340.2	MOS4-associated  complex 3B 	LOC_Os10g32880.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g065090.1	U box; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7064.1.S1_s_at	A	A1TS	POPTR_0004s14290	POPTR_0004s14290 (11)	scaffold_4:14749229-14749584(-) (11)	NA	Q949R4	"4,5-DOPA dioxygenase extradiol-like protein"	AT4G15093.1	catalytic LigB subunit of aromatic ring-opening dioxygenase family 	LOC_Os01g65680.1	"4,5-DOPA dioxygenase extradiol, putative, expressed"	Medtr6g070870.1	"Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B "	GO:0006725|cellular aromatic compound metabolic process	GO:0008198|ferrous iron binding||GO:0016491|oxidoreductase activity	NA
Ptp.7065.1.S1_at	A	A1MS	POPTR_0006s21960	POPTR_0006s21960 (9)	scaffold_6:20963310-20963468(+) (9)	NA	Q9SRM9	Aluminum-activated malate transporter 8	AT3G11680.1	Aluminium activated malate transporter family protein 	LOC_Os04g34010.1	"aluminum-activated malate transporter, putative, expressed"	Medtr2g105110.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7066.1.S1_at	A	A1TS	POPTR_0008s02970	POPTR_0008s02970 (10)	scaffold_8:1556212-1556807(+) (10)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g44590.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr7g124420.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7067.1.S1_at	A	A1TS	POPTR_0001s30260	POPTR_0001s30260 (11)	scaffold_1:28773490-28773961(+) (11)	NA	Q42430	Zinc finger protein 1	AT1G27730.1	salt tolerance zinc finger 	LOC_Os12g39400.1	"ZOS12-09 - C2H2 zinc finger protein, expressed"	Medtr1g023440.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.7068.1.S1_at	A	A1TS	POPTR_0018s09710	POPTR_0018s09710 (10)	scaffold_18:10723006-10723332(+) (10)	NA	Q96522	Peroxidase 45	AT4G30170.1	Peroxidase family protein 	LOC_Os07g02440.1	"peroxidase precursor, putative, expressed"	Medtr8g129440.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.707.1.A1_at	A	A1TS	POPTR_0001s10410	POPTR_0001s10410 (11)	scaffold_1:8090322-8090975(+) (11)	NA	Q9T012	High mobility group B protein 13	AT4G11080.1	HMG (high mobility group) box protein 	LOC_Os02g15810.1	"HMG1/2, putative, expressed"	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7071.1.S1_s_at	A	A1TS	POPTR_0017s12780	POPTR_0017s12780 (11)	scaffold_17:12951935-12952197(+) (11)	NA	Q9FNP8	40S ribosomal protein S19-3	AT5G61170.1	Ribosomal protein S19e family protein 	LOC_Os03g31134.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g005130.1	Ribosomal protein S19e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7072.1.S1_s_at	A	A1TS	POPTR_0013s06360	POPTR_0013s06360 (11)	scaffold_13:4909885-4909931(+) (11)//scaffold_15:9250514-9250560(-) (10)//scaffold_7:6016547-6016593(+) (10)	NA	Q4PGW7	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr7g103920.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.7073.1.S1_at	A	A1MS	POPTR_0010s13310	POPTR_0010s13310 (10)	scaffold_10:13168292-13168399(+) (10)	NA	Q8LGG8	Universal stress protein A-like protein	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.7073.3.A1_s_at	A	A1TS	POPTR_0010s13310	POPTR_0010s13310 (11)	scaffold_10:13167377-13168147(+) (11)	NA	Q8LGG8	Universal stress protein A-like protein	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.7074.1.S1_at	A	A1TS	POPTR_0004s06090	POPTR_0004s06090 (11)	scaffold_4:4838955-4839491(-) (11)	NA	O49403	Heat stress transcription factor A-4a	AT4G18880.1	heat shock transcription factor  A4A 	LOC_Os01g54550.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g135910.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.7075.1.S1_at	A	A1TS	POPTR_0013s06300	POPTR_0013s06300 (9)	scaffold_13:4729028-4729452(+) (9)	NA	Q93V93	Peroxidase 44	AT4G26010.1	Peroxidase superfamily protein 	LOC_Os03g02939.1	"peroxidase precursor, putative, expressed"	Medtr7g103630.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.7076.2.S1_at	A	A1MS	POPTR_0005s24780	POPTR_0005s24780 (11)	scaffold_5:23226855-23226895(+) (11)	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.7078.1.S1_s_at	A	A1MS	POPTR_0009s07790	POPTR_0009s07790 (11)	scaffold_9:7235027-7235476(+) (11)	NA	Q91348	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase"	AT1G07110.1	"fructose-2,6-bisphosphatase "	LOC_Os05g07130.1	"6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed"	Medtr5g080220.1	"Fructose-2,6-bisphosphatase; "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0006000|fructose metabolic process	GO:0003873|6-phosphofructo-2-kinase activity||GO:0005524|ATP binding	NA
Ptp.708.1.A1_at	A	A1MS	POPTR_0016s13270	POPTR_0016s13270 (9)	scaffold_16:12467069-12473499(-) (10)	POPTR_0016s13260 (7)	Q8H1T3	"Ferritin-2, chloroplastic"	AT5G01600.1	ferretin 1 	LOC_Os12g01530.1	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr4g011930.1	Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
Ptp.7081.1.A1_a_at	A	A1TS	POPTR_0014s18850	POPTR_0014s18850 (11)	scaffold_14:16353857-16354065(-) (11)	NA	Q56W64	Probable isoaspartyl peptidase/L-asparaginase 3	AT5G61540.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os04g46370.1	"L-asparaginase precursor protein, putative, expressed"	Medtr3g009540.1	"Peptidase T2, asparaginase 2 "	NA	GO:0016787|hydrolase activity	NA
Ptp.7082.1.S1_at	A	A1TS	POPTR_0005s16410	POPTR_0005s16410 (9)	scaffold_5:13163342-13164522(-) (9)	NA	Q84WN0	"Uncharacterized protein At4g37920, chloroplastic"	AT1G36320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g20110.1	expressed protein	Medtr2g034600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7086.1.S1_a_at	A	A1TS	POPTR_0002s01660	POPTR_0002s01660 (11)	scaffold_2:878659-882709(-) (11)	NA	Q96324	Glutathione S-transferase	AT3G03190.1	glutathione S-transferase F11 	LOC_Os03g04260.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7088.1.S1_at	A	A1TS	POPTR_0001s22800	POPTR_0001s22800 (11)	scaffold_1:21693430-21694353(+) (11)	NA	Q84VQ1	SNF1-related protein kinase regulatory subunit beta-1	AT5G21170.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os05g41220.1	"SNF1-related protein kinase regulatory subunit beta-1, putative, expressed"	Medtr5g095330.1	"SNF1-related protein kinase regulatory subunit beta-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7090.1.S1_at	A	A1TS	POPTR_0002s11180	POPTR_0002s11180 (11)	scaffold_2:8258502-8259680(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT4G24480.1	Protein kinase superfamily protein 	LOC_Os04g52140.1	"protein kinase domain containing protein, expressed"	Medtr3g149670.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7094.1.S1_at	A	A1TS	POPTR_0006s05030	POPTR_0006s05030 (11)	scaffold_6:3501343-3503591(-) (11)	NA	Q6DBQ8	Glycolipid transfer protein domain-containing protein 1	AT2G34690.1	Glycolipid transfer protein (GLTP) family protein 	LOC_Os03g57140.1	"GLTP domain containing protein, putative, expressed"	Medtr2g130020.1	"Glycolipid transfer protein, GLTP "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
Ptp.7095.1.S1_at	A	A1TS	POPTR_0008s19110	POPTR_0008s19110 (11)	scaffold_8:13094551-13094611(+) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr3g114720.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7098.1.S1_at	A	A1TS	POPTR_0009s08340	POPTR_0009s08340 (11)	scaffold_9:7665959-7666494(+) (11)	NA	O60094	DNA polymerase V	AT5G64420.1	DNA polymerase V family 	LOC_Os02g04270.1	"DNA polymerase V, putative, expressed"	Medtr2g010160.1	DNA polymerase V 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
Ptp.71.1.A1_a_at	A	A1TS	POPTR_0001s25100	POPTR_0001s25100 (11)	scaffold_1:24328506-24329034(-) (11)	NA	Q0WWW9	"D-xylose-proton symporter-like 3, chloroplastic"	AT5G59250.1	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.710.1.A1_at	A	A1TS	POPTR_0006s24100	POPTR_0006s24100 (10)	scaffold_6:22777407-22777775(-) (10)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7100.1.A1_s_at	A	A1TS	POPTR_0013s02980	POPTR_0013s02980 (11)	scaffold_13:1803308-1803675(-) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G27320.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g098780.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.7101.1.S1_s_at	A	A1TS	POPTR_0009s11520	POPTR_0009s11520 (11)	scaffold_9:9551159-9551853(-) (11)	NA	P27612	Phospholipase A-2-activating protein	AT3G18860.1	transducin family protein / WD-40 repeat family protein 	LOC_Os07g03160.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7103.1.S1_at	A	A1TS	POPTR_0007s14820	POPTR_0007s14820 (11)	scaffold_7:14549176-14549398(+) (11)	NA	NA	NA	AT1G58420.1	Uncharacterised conserved protein UCP031279 	NA	NA	Medtr8g101800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7105.1.S1_s_at	A	A1TS	POPTR_0011s03350	POPTR_0011s03350 (11)	scaffold_11:3500651-3501166(+) (11)	NA	NA	NA	AT1G61740.1	Sulfite exporter TauE/SafE family protein 	LOC_Os01g57710.1	"membrane protein, putative, expressed"	Medtr2g010790.1	Protein of unknown function DUF81 	NA	NA	GO:0016021|integral to membrane
Ptp.7107.1.S1_at	A	A1MS	POPTR_0010s14280	POPTR_0010s14280 (9)	scaffold_10:13944077-13944577(-) (9)	NA	Q9LI84	Probable calcium-binding protein CML16	AT3G25600.1	Calcium-binding EF-hand family protein 	LOC_Os05g50180.1	"OsCML14 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g115680.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7108.1.S1_at	A	A1TS	POPTR_0011s05840	POPTR_0011s05840 (9)	scaffold_11:5888743-5889296(-) (9)	NA	NA	NA	AT5G46060.1	"Protein of unknown function, DUF599 "	LOC_Os08g28970.1	expressed protein	Medtr2g018300.1	Disease resistance protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7110.1.S1_s_at	A	A1TS	POPTR_0014s16830	POPTR_0014s16830 (11)	scaffold_14:12928489-12929009(-) (11)	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G04240.2	RING/U-box superfamily protein 	LOC_Os08g38460.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g106720.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7110.2.S1_at	A	A1TS	POPTR_0014s16830	POPTR_0014s16830 (9)	scaffold_14:12927769-12927838(-) (9)	NA	Q9ZU51	Probable E3 ubiquitin-protein ligase RHA2B	AT2G04240.2	RING/U-box superfamily protein 	LOC_Os08g38460.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g106720.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7112.1.S1_at	A	A1TS	POPTR_0018s08410	POPTR_0018s08410 (10)	scaffold_18:9356213-9356443(-) (10)	NA	NA	NA	AT5G21940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g35630.1	"MTD1, putative, expressed"	Medtr1g019780.1	"MTD1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7112.1.S1_s_at	A	A1TS	POPTR_0018s08410	POPTR_0018s08410 (11)	scaffold_18:9355190-9355394(-) (11)	NA	NA	NA	AT5G21940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g35630.1	"MTD1, putative, expressed"	Medtr1g019780.1	"MTD1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7113.1.S1_at	A	A1TS	POPTR_0002s20290	POPTR_0002s20290 (10)	scaffold_2:16281391-16282005(+) (10)	NA	NA	NA	AT4G02270.1	root hair specific 13 	NA	NA	Medtr1g107970.1	Cell surface antigen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7114.1.S1_s_at	A	A1TS	POPTR_0013s05790	POPTR_0013s05790 (11)	scaffold_13:4177647-4178022(-) (11)	NA	O64654	"Thioredoxin-like 1-1, chloroplastic"	AT1G08570.1	atypical CYS  HIS rich thioredoxin 4 	LOC_Os03g21000.1	"thioredoxin, putative, expressed"	Medtr7g100190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.7115.1.S1_a_at	A	A2TS	POPTR_0013s05540	POPTR_0019s04940 (11)//POPTR_0013s05540 (11)	scaffold_13:3944686-3945340(-) (11)//scaffold_19:5148588-5149258(+) (11)	NA	Q9UNL4	Inhibitor of growth protein 4	AT1G54390.3	PHD finger protein-related 	LOC_Os03g53700.1	"PHD-finger domain containing protein, putative, expressed"	Medtr7g100390.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7115.1.S1_at	A	A1TS	POPTR_0013s05540	POPTR_0013s05540 (11)	scaffold_13:3944578-3945723(-) (11)	NA	Q9UNL4	Inhibitor of growth protein 4	AT1G54390.3	PHD finger protein-related 	LOC_Os03g53700.1	"PHD-finger domain containing protein, putative, expressed"	Medtr7g100390.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7116.1.S1_s_at	A	A1TS	POPTR_0005s21500	POPTR_0005s21500 (11)	scaffold_5:20634901-20635121(-) (11)	NA	P42777	G-box-binding factor 4	AT5G44080.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g64730.1	"bZIP transcription factor domain containing protein, expressed"	Medtr1g125010.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.7117.1.S1_s_at	A	A1TS	POPTR_0007s05300	POPTR_0007s05300 (11)	scaffold_7:3415756-3415961(+) (11)	NA	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os02g18320.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr3g101870.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.7119.1.S1_at	A	A1TS	POPTR_0001s24070	POPTR_0001s24070 (11)	scaffold_1:23453947-23454308(-) (11)	NA	Q9LQQ8	Probable serine/threonine-protein kinase RLCKVII	AT1G07870.2	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g113860.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.712.1.A1_s_at	A	A1TS	POPTR_0010s08740	POPTR_0010s08740 (11)	scaffold_10:9601687-9602222(-) (11)	NA	P27806	Histone H1	AT2G30620.2	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.7120.1.S1_at	A	A1TS	POPTR_0010s19280	POPTR_0010s19280 (11)	scaffold_10:17238842-17239219(+) (11)	NA	NA	NA	AT5G05500.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os01g07060.1	"POEI43 - Pollen Ole e I allergen and extensin family protein precursor, putative"	Medtr3g094630.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7121.1.S1_at	A	A1TS	POPTR_0007s13730	POPTR_0007s13730 (11)	scaffold_7:13788598-13790246(-) (11)	NA	P43557	"Protein FMP32, mitochondrial"	AT2G16460.1	Protein of unknown function (DUF1640) 	LOC_Os06g49890.1	"coiled-coil domain-containing protein 90A, mitochondrial precursor, putative, expressed"	Medtr5g021330.1	Protein of unknown function DUF1640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7122.1.S1_at	A	A1TS	POPTR_0015s01390	POPTR_0015s01390 (11)	scaffold_15:860102-861382(+) (11)	NA	NA	NA	AT5G53045.1	unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os02g20280.1	conserved hypothetical protein	Medtr1g009000.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7124.1.S1_at	A	A1TS	POPTR_0004s14860	POPTR_0004s14860 (11)	scaffold_4:15517619-15518371(-) (11)	NA	Q8QZZ7	TP53RK-binding protein	AT4G34412.1	CONTAINS InterPro DOMAIN/s: Kinase binding protein CGI-121 (InterPro:IPR013926); Has 275 Blast hits to 275 proteins in 139 species: Archae - 0; Bacteria - 5; Metazoa - 98; Fungi - 109; Plants - 42; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os01g04910.1	"TP53RK-binding protein, putative, expressed"	AC233655_19.1	Kinase binding protein CGI-121 AC233655.2 128812-130346 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7129.1.S1_at	A	A1TS	POPTR_0001s23940	POPTR_0001s23940 (9)	scaffold_1:23322553-23323107(+) (9)	NA	Q9ZPW9	Non-specific lipid-transfer protein 8	AT2G18370.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g34840.1	"LTPL5 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr2g080460.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.713.1.S1_at	A	A1TS	POPTR_0014s08480	POPTR_0014s08480 (10)	scaffold_14:6294860-6295462(-) (10)	NA	Q3EDL4	Probable serine/threonine-protein kinase At1g01540	AT1G01540.2	Protein kinase superfamily protein 	LOC_Os03g03410.1	"serine/threonine-protein kinase, putative, expressed"	Medtr7g088440.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7131.2.S1_at	A	A1MS	POPTR_0009s03240	POPTR_0009s03240 (9)	scaffold_9:3926611-3926862(-) (9)	NA	Q9LX82	Transcription factor MYB48	AT3G46130.1	myb domain protein 48 	LOC_Os11g47460.1	"MYB family transcription factor, putative, expressed"	Medtr2g114450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7132.1.S1_at	A	A1TS	POPTR_0015s05980	POPTR_0015s05980 (11)	scaffold_15:6282182-6282716(-) (11)	NA	P23472	Hevamine-A	AT5G24090.1	chitinase A 	LOC_Os07g19040.1	"glycosyl hydrolase, putative"	Medtr1g125770.1	"Glycoside hydrolase, chitinase active site "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.7134.1.S1_a_at	A	A1TS	POPTR_0009s11390	POPTR_0009s11390 (11)	scaffold_9:9481790-9482592(-) (11)	NA	P23244	Hemoglobin-2	AT2G16060.1	hemoglobin 1 	LOC_Os03g12510.1	"non-symbiotic hemoglobin 2, putative, expressed"	Medtr5g087770.1	Globin 	NA	GO:0020037|heme binding	NA
Ptp.7136.1.A1_s_at	A	A1TS	POPTR_0010s00910	POPTR_0010s00910 (11)	scaffold_10:634488-635485(-) (11)	NA	Q80ZX8	Sperm-associated antigen 1	AT3G16760.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g22140.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g065330.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7137.1.S1_at	A	A1TS	POPTR_0013s15100	POPTR_0013s15100 (9)	scaffold_13:15156781-15157131(+) (11)	NA	NA	NA	AT3G51620.2	PAP/OAS1 substrate-binding domain superfamily 	LOC_Os12g02260.1	"nucleotidyltransferase, putative, expressed"	Medtr5g083100.1	"DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	NA
Ptp.7138.1.S1_s_at	A	A1TS	POPTR_0015s02120	POPTR_0015s02120 (11)	scaffold_15:1458485-1459340(-) (11)	NA	NA	NA	AT3G61700.2	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7139.1.S1_at	A	A1TS	POPTR_0006s12310	POPTR_0006s12310 (10)	scaffold_6:9476061-9476445(-) (10)	NA	Q15428	Splicing factor 3A subunit 2	AT2G32600.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g15700.1	"splicing factor 3A subunit 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.714.1.A1_a_at	A	A1TS	POPTR_0008s06510	POPTR_0008s06510 (11)	scaffold_8:3871535-3871643(+) (11)	NA	NA	NA	AT5G23950.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7140.1.S1_at	A	A1TS	POPTR_0019s04470	POPTR_0019s04470 (11)	scaffold_19:4628235-4633155(+) (11)	NA	Q9SWE7	V-type proton ATPase subunit E	AT4G11150.1	vacuolar ATP synthase subunit E1 	LOC_Os01g46980.1	"vacuolar ATP synthase subunit E, putative, expressed"	Medtr5g009830.1	"H+-transporting two-sector ATPase, E subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.7142.1.S1_at	A	A1TS	POPTR_0009s11840	POPTR_0009s11840 (9)	scaffold_9:9750711-9752202(-) (9)	NA	P54654	Adenylyl cyclase-associated protein	AT4G34490.1	cyclase associated protein 1 	LOC_Os03g51250.1	"adenylyl cyclase-associated protein, putative, expressed"	Medtr4g095480.1	Cyclase-associated protein; 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.7143.1.S1_at	A	A1TS	POPTR_0009s06290	POPTR_0009s06290 (11)	scaffold_9:6086881-6088369(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.7147.1.S1_a_at	A	A1TS	POPTR_0017s13430	POPTR_0017s13430 (11)	scaffold_17:13596440-13597946(+) (11)	NA	P39598	Uncharacterized protein ywbO	AT5G38900.1	Thioredoxin superfamily protein 	NA	NA	Medtr7g014900.2	DSBA oxidoreductase; Thioredoxin-like fold 	NA	GO:0015035|protein disulfide oxidoreductase activity	GO:0030288|outer membrane-bounded periplasmic space
Ptp.7148.1.S1_at	A	A1TS	POPTR_0005s05420	POPTR_0005s05420 (9)	scaffold_5:3585311-3585749(-) (9)	NA	Q9LIK7	"Putative calcium-transporting ATPase 13, plasma membrane-type"	AT3G22910.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.7149.1.S1_at	A	A1TS	POPTR_0005s16490	POPTR_0005s16490 (9)	scaffold_5:13337716-13338320(+) (9)	NA	NA	NA	AT4G08570.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g26650.2	"heavy metal-associated domain containing protein, expressed"	Medtr4g140470.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.715.2.A1_at	A	A1TS	POPTR_0004s14120	POPTR_0004s14120 (11)	scaffold_4:14611253-14611332(+) (11)	NA	P80318	T-complex protein 1 subunit gamma	AT5G26360.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g34690.1	"T-complex protein, putative, expressed"	Medtr2g015240.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.7150.1.S1_at	A	A1MS	POPTR_0015s10090	POPTR_0015s10090 (9)	scaffold_15:11130525-11130861(-) (9)	NA	Q9SJM0	Callose synthase 10	AT2G36850.1	glucan synthase-like 8 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.7151.1.S1_at	A	A1TS	POPTR_0009s11590	POPTR_0009s11590 (10)	scaffold_9:9603345-9603754(+) (10)	NA	Q9SDY5	NEDD8-conjugating enzyme Ubc12	AT4G36800.2	RUB1 conjugating enzyme 1 	LOC_Os10g11260.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.7151.1.S1_s_at	A	A1TS	POPTR_0009s11590	POPTR_0009s11590 (11)	scaffold_9:9603741-9604275(+) (11)	NA	Q9SDY5	NEDD8-conjugating enzyme Ubc12	AT4G36800.2	RUB1 conjugating enzyme 1 	LOC_Os10g11260.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g019390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.7154.1.A1_at	A	A1TS	POPTR_0001s28480	POPTR_0001s28480 (11)	scaffold_1:27239936-27240558(+) (11)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT5G58660.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g33360.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr7g047260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7154.2.A1_a_at	A	A1TS	POPTR_0001s28480	POPTR_0001s28480 (11)	scaffold_1:27237825-27238149(+) (11)	NA	O49561	Gibberellin 2-beta-dioxygenase 8	AT5G58660.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g33360.1	"gibberellin 2-beta-dioxygenase 7, putative, expressed"	Medtr7g047260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7155.1.A1_at	A	A1TS	POPTR_0007s04040	POPTR_0007s04040 (10)	scaffold_7:2414591-2417245(-) (10)	POPTR_0005s06290 (8)	Q749B4	50S ribosomal protein L17	AT5G09770.1	Ribosomal protein L17 family protein 	LOC_Os01g62210.1	"50S ribosomal protein L17, putative, expressed"	Medtr3g143710.1	Ribosomal protein L17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7158.1.S1_s_at	A	A1TS	POPTR_0011s05340	POPTR_0011s05340 (11)	scaffold_11:5263294-5264751(+) (11)	NA	Q03211	Pistil-specific extensin-like protein	AT2G33790.1	arabinogalactan protein 30 	LOC_Os01g07010.1	"POEI38 - Pollen Ole e I allergen and extensin family protein precursor, putative"	Medtr4g141270.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7160.1.S1_s_at	A	A1TS	POPTR_0013s05560	POPTR_0013s05560 (11)	scaffold_13:3961716-3962033(+) (11)	NA	Q08632	Short-chain type dehydrogenase/reductase	AT4G13180.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g31780.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	AC233662_57.1	Short-chain dehydrogenase/reductase SDR AC233662.1 262132-261094 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7160.2.A1_a_at	A	A1TS	POPTR_0013s05560	POPTR_0013s05560 (11)	scaffold_13:3961102-3961699(+) (11)	NA	Q08632	Short-chain type dehydrogenase/reductase	AT4G13180.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g31780.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	AC233662_57.1	Short-chain dehydrogenase/reductase SDR AC233662.1 262132-261094 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7162.1.S1_at	A	A1TS	POPTR_0014s01770	POPTR_0014s01770 (11)	scaffold_14:1655327-1655641(+) (11)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7164.1.S1_at	A	A1TS	POPTR_0015s09860	POPTR_0015s09860 (10)	scaffold_15:10957958-10958419(+) (10)	NA	Q7ZVZ7	Abhydrolase domain-containing protein FAM108C1	AT4G24760.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g18860.1	"OsPOP23 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g032300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7165.1.S1_at	A	A1TS	POPTR_0017s00500	POPTR_0017s00500 (9)	scaffold_17:188950-189885(-) (9)	NA	A2Q1V6	Cysteine protease ATG4	AT2G44140.1	Peptidase family C54 protein 	LOC_Os04g58560.1	"cysteine protease ATG4, putative, expressed"	Medtr7g092800.1	Peptidase C54 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7166.1.S1_at	A	A1TS	POPTR_0008s12670	POPTR_0008s12670 (11)	scaffold_8:8195320-8195694(-) (11)	NA	NA	NA	AT2G01300.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g03130.1	expressed protein	Medtr1g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7167.1.S1_s_at	A	A1TS	POPTR_0011s00480	POPTR_0011s00480 (11)	scaffold_11:198259-198401(+) (11)	NA	Q1JPL7	Pectinesterase/pectinesterase inhibitor 18	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g046920.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.717.1.A1_s_at	A	A1TS	POPTR_0015s15280	POPTR_0015s15280 (11)	scaffold_15:14617273-14617649(+) (11)	NA	Q2MY58	Patatin group A-3	AT3G54950.1	patatin-like protein 6 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g121000.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
Ptp.7170.1.S1_s_at	A	A2TS	POPTR_0001s10130	POPTR_0001s10150 (10)//POPTR_0001s10130 (10)	scaffold_1:7835493-7835960(-) (10)//scaffold_1:7843048-7843515(-) (10)	NA	P13240	Disease resistance response protein 206	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44250.1	"dirigent, putative, expressed"	Medtr8g137520.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7171.1.S1_s_at	A	A1TS	POPTR_0002s17150	POPTR_0002s17150 (11)	scaffold_2:12939878-12940105(-) (11)	NA	P0CH01	Putative RING-H2 finger protein ATL21A	AT2G46495.1	RING/U-box superfamily protein 	LOC_Os08g37760.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235758_12.1	"Zinc finger, RING-type AC235758.1 57299-60764 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7174.1.S1_s_at	A	A1TS	POPTR_0001s06840	POPTR_0001s06840 (11)	scaffold_1:5231795-5233377(+) (11)	POPTR_0003s19370 (8)	A8K979	ERI1 exoribonuclease 2	AT3G15140.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os01g17279.1	"exonuclease, putative, expressed"	Medtr8g043920.1	"Prion protein-interacting protein, related "	NA	GO:0008270|zinc ion binding	NA
Ptp.7175.2.S1_s_at	A	A1TS	POPTR_0001s16520	POPTR_0001s16520 (11)	scaffold_1:13305255-13305348(+) (11)	NA	NA	NA	AT1G54070.1	Dormancy/auxin associated family protein 	NA	NA	Medtr8g025840.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7176.1.S1_a_at	A	A1TS	POPTR_0006s11790	POPTR_0006s11790 (11)	scaffold_6:8964923-8965150(-) (11)	NA	Q9FMY5	Splicing factor U2af small subunit B	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.7178.1.S1_at	A	A1TS	POPTR_0016s03990	POPTR_0016s03990 (11)	scaffold_16:2235643-2236173(+) (11)	NA	Q9SU56	"L-galactono-1,4-lactone dehydrogenase, mitochondrial"	AT3G47930.1	"L-galactono-1,4-lactone dehydrogenase "	LOC_Os12g04520.1	"FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed"	Medtr1g068880.1	Galactonolactone dehydrogenase 	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.7179.1.S1_at	A	A1MS	POPTR_0005s02680	POPTR_0005s02680 (10)	scaffold_5:1710682-1710993(-) (10)	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr8g138850.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7180.1.S1_at	A	A1TS	POPTR_0006s21220	POPTR_0006s21220 (11)	scaffold_6:20321016-20321090(+) (11)	NA	Q8LB17	Uncharacterized protein At3g58460	AT3G58460.1	RHOMBOID-like protein 15 	LOC_Os03g44830.1	"OsRhmbd9 - Putative Rhomboid homologue, expressed"	AC235488_11.1	Rhomboid-like protein; UBA-like AC235488.1 47326-40593 E EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
Ptp.7180.2.S1_s_at	A	A1TS	POPTR_0006s21220	POPTR_0006s21220 (11)	scaffold_6:20317138-20317788(+) (11)	NA	Q8LB17	Uncharacterized protein At3g58460	AT3G58460.1	RHOMBOID-like protein 15 	LOC_Os03g44830.1	"OsRhmbd9 - Putative Rhomboid homologue, expressed"	AC235488_11.1	Rhomboid-like protein; UBA-like AC235488.1 47326-40593 E EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
Ptp.7180.3.S1_s_at	A	A1TS	POPTR_0006s21220	POPTR_0006s21220 (11)	scaffold_6:20319195-20320858(+) (11)	NA	Q8LB17	Uncharacterized protein At3g58460	AT3G58460.1	RHOMBOID-like protein 15 	LOC_Os03g44830.1	"OsRhmbd9 - Putative Rhomboid homologue, expressed"	AC235488_11.1	Rhomboid-like protein; UBA-like AC235488.1 47326-40593 E EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
Ptp.7183.1.A1_at	A	A1MS	POPTR_0016s12180	POPTR_0016s12180 (9)	scaffold_16:11519089-11519383(+) (9)	NA	NA	NA	AT5G01260.2	Carbohydrate-binding-like fold 	LOC_Os05g37450.1	"starch binding domain containing protein, putative, expressed"	Medtr4g012900.1	"Glycoside hydrolase, starch-binding; "	GO:0005975|carbohydrate metabolic process	GO:0003824|catalytic activity	NA
Ptp.7186.1.A1_s_at	A	A1TS	POPTR_0009s01980	POPTR_0009s01980 (11)	scaffold_9:2524745-2526155(+) (11)	NA	Q86VX9	Vacuolar fusion protein MON1 homolog A	AT2G28390.1	SAND family protein 	LOC_Os01g74460.2	"vacuolar fusion protein MON1 homolog A, putative, expressed"	Medtr2g110240.1	Yeast 73.5kDa hypothetical-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7187.1.S1_at	A	A1TS	POPTR_0001s27690	POPTR_0001s27690 (10)	scaffold_1:26545628-26546109(+) (10)	NA	P25766	Ras-related protein RGP1	AT3G12160.1	RAB GTPase homolog A4D 	LOC_Os09g10940.1	"ras-related protein, putative, expressed"	Medtr3g101960.1	Ras GTPase; 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.7190.1.S1_a_at	A	A1TS	POPTR_0006s07600	POPTR_0006s07600 (11)	scaffold_6:5527471-5527717(+) (11)	NA	Q9LVD4	Oxysterol-binding protein-related protein 4C	AT5G57240.2	OSBP(oxysterol binding protein)-related protein 4C 	LOC_Os08g40590.2	"oxysterol-binding protein, putative, expressed"	Medtr2g042530.1	Oxysterol-binding protein 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
Ptp.7191.1.S1_at	A	A1TS	POPTR_0012s13670	POPTR_0012s13670 (9)	scaffold_12:13721093-13722422(+) (9)	NA	Q9FJ80	F-box protein PP2-A14	AT5G52120.1	phloem protein 2-A14 	LOC_Os03g02550.1	"OsFBX76 - F-box domain containing protein, expressed"	Medtr1g129330.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7193.1.S1_at	A	A1MS	POPTR_0001s28210	POPTR_0001s28210 (9)	scaffold_1:26976393-26977003(+) (9)	NA	NA	NA	AT4G29070.2	Phospholipase A2 family protein 	LOC_Os07g46420.1	expressed protein	Medtr2g130270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7197.1.S1_at	A	A1TS	POPTR_0014s09580	POPTR_0014s09580 (9)	scaffold_14:7149765-7150304(-) (9)	NA	NA	NA	AT2G46550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g30930.1	expressed protein	Medtr1g008960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7198.2.A1_a_at	A	A1TS	POPTR_0010s21030	POPTR_0010s21030 (11)	scaffold_10:18471999-18473123(+) (11)	NA	Q9M2T1	AP3-complex subunit beta-A	AT3G55480.2	protein affected trafficking 2 	LOC_Os01g74180.1	"adaptin, putative, expressed"	Medtr5g087340.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.7199.1.S1_s_at	A	A1TS	POPTR_0011s09530	POPTR_0011s09530 (11)	scaffold_11:11831905-11831984(-) (11)	NA	Q9M4Y3	"30S ribosomal protein S10, chloroplastic"	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7199.2.A1_s_at	A	A1TS	POPTR_0011s09530	POPTR_0011s09530 (11)	scaffold_11:11830958-11831053(-) (11)	NA	Q9M4Y3	"30S ribosomal protein S10, chloroplastic"	AT3G13120.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g10060.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.72.1.S1_at	A	A1TS	POPTR_0003s17150	POPTR_0003s17150 (11)	scaffold_3:16598532-16600388(+) (11)	NA	NA	NA	AT1G67350.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photorespiration; LOCATED IN: mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g48110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7200.1.S1_s_at	A	A1TS	POPTR_0002s12380	POPTR_0002s12380 (11)	scaffold_2:9183549-9183751(+) (11)	NA	Q9STX3	F-box protein GID2	AT4G24210.1	F-box family protein 	NA	NA	Medtr5g104810.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7201.1.A1_at	A	A1TS	POPTR_0008s20730	POPTR_0008s20730 (9)	scaffold_8:14713063-14713384(+) (9)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33400.1	"basic 7S globulin precursor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7201.1.A1_s_at	A	A2TS	POPTR_0008s20730	POPTR_0008s20730 (9)//POPTR_0509s00210 (9)	scaffold_509:14420-14582(-) (9)//scaffold_8:14713402-14713564(+) (9)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33400.1	"basic 7S globulin precursor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7203.1.S1_s_at	A	A1TS	POPTR_0010s20370	POPTR_0010s20370 (9)	scaffold_10:17989480-17990554(-) (11)	NA	NA	NA	AT2G39855.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55646.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr5g088650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7205.1.S1_s_at	A	A1TS	POPTR_0010s06220	POPTR_0010s06220 (11)	scaffold_10:7632530-7634754(-) (11)	NA	Q6P7R8	Estradiol 17-beta-dehydrogenase 12	AT1G67730.1	beta-ketoacyl reductase 1 	LOC_Os02g38440.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g102850.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7206.1.S1_at	A	A1TS	POPTR_0013s09260	POPTR_0013s09260 (11)	scaffold_13:8907784-8909141(-) (11)	NA	Q87JZ5	UPF0189 protein VPA0103	AT2G40600.1	appr-1-p processing enzyme family protein 	LOC_Os03g21830.1	"appr-1-p processing enzyme family protein, putative, expressed"	Medtr1g008730.1	Appr-1-p processing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7209.1.S1_at	A	A1TS	POPTR_0017s11160	POPTR_0017s11160 (11)	scaffold_17:10829237-10829398(+) (11)	NA	Q54N38	Ubiquitin carboxyl-terminal hydrolase isozyme L5	AT1G65650.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	LOC_Os02g57630.2	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr8g105130.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	GO:0005622|intracellular
Ptp.7209.1.S1_s_at	A	A1TS	POPTR_0017s11160	POPTR_0017s11160 (11)	scaffold_17:10829578-10829779(+) (11)	NA	Q54N38	Ubiquitin carboxyl-terminal hydrolase isozyme L5	AT1G65650.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	LOC_Os02g57630.2	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr8g105130.1	"Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	GO:0005622|intracellular
Ptp.7210.1.S1_at	A	A1MS	POPTR_0010s23800	POPTR_0010s23800 (11)	scaffold_10:20281346-20281639(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7213.1.S1_s_at	A	A1TS	POPTR_0018s01330	POPTR_0018s01330 (11)	scaffold_18:1293180-1293701(-) (11)	POPTR_1294s00200 (7)	Q9ZP41	EG45-like domain containing protein	NA	NA	LOC_Os09g29710.1	"beta-expansin precursor, putative, expressed"	Medtr3g136440.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7214.1.A1_at	A	A1TS	POPTR_0003s08190	POPTR_0003s08190 (10)	scaffold_3:9597389-9598974(+) (10)	NA	P75713	Uncharacterized protein ylbA	AT4G17050.1	ureidoglycine aminohydrolase 	LOC_Os07g31270.1	"cupin 2, conserved barrel domain protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7216.1.S1_a_at	A	A1TS	POPTR_0014s17090	POPTR_0014s17090 (11)	scaffold_14:13259630-13259892(+) (11)	NA	NA	NA	AT3G07580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g39630.2	"iron-stress related protein, putative, expressed"	Medtr3g163650.1	"iron-stress related protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7216.3.S1_s_at	A	A1TS	POPTR_0014s17090	POPTR_0014s17090 (11)	scaffold_14:13258002-13258582(+) (11)	NA	NA	NA	AT3G07580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g39630.2	"iron-stress related protein, putative, expressed"	Medtr3g163650.1	"iron-stress related protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7217.1.S1_s_at	A	A1TS	POPTR_0010s19860	POPTR_0010s19860 (11)	scaffold_10:17648032-17648539(+) (11)	NA	O04204	60S acidic ribosomal protein P0-1	AT2G40010.1	Ribosomal protein L10 family protein 	LOC_Os08g03640.1	"60S acidic ribosomal protein P0, putative, expressed"	Medtr5g089540.1	Ribosomal protein L10; Ribosomal protein 60S 	GO:0034645|cellular macromolecule biosynthetic process||GO:0042254|ribosome biogenesis||GO:0006414|translational elongation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.722.1.S1_at	A	A1TS	POPTR_0008s13940	POPTR_0008s13940 (11)	scaffold_8:9196896-9197394(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g028080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7220.1.S1_s_at	A	A1TS	POPTR_0017s06570	POPTR_0017s06570 (11)	scaffold_17:4992843-4993255(+) (11)	NA	O23044	Peroxidase 3	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os06g46799.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.7226.1.S1_s_at	A	A1TS	POPTR_0010s00340	POPTR_0010s00340 (11)	scaffold_10:119812-121008(-) (11)	NA	Q8GZ17	COBRA-like protein 7	AT4G16120.1	COBRA-like protein-7 precursor 	LOC_Os06g47110.1	"COBRA-like protein precursor, putative, expressed"	Medtr5g005810.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7228.1.A1_a_at	A	A1TS	POPTR_0008s13420	POPTR_0008s13420 (9)	scaffold_8:8797104-8797816(-) (11)	NA	Q68F38	Protein VAC14 homolog	AT2G01690.1	ARM repeat superfamily protein 	LOC_Os03g12300.1	"HEAT repeat family protein, putative, expressed"	Medtr4g157120.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7229.1.S1_at	A	A1TS	POPTR_0006s23410	POPTR_0006s23410 (11)	scaffold_6:22143795-22144258(+) (11)	NA	Q9SMZ3	F-box only protein 13	AT4G33160.1	F-box family protein 	LOC_Os03g28130.1	"OsFBX94 - F-box domain containing protein, expressed"	Medtr3g104000.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7229.2.S1_a_at	A	A1TS	POPTR_0006s23410	POPTR_0006s23410 (11)	scaffold_6:22142822-22143043(+) (11)	NA	Q9SMZ3	F-box only protein 13	AT4G33160.1	F-box family protein 	LOC_Os03g28130.1	"OsFBX94 - F-box domain containing protein, expressed"	Medtr3g104000.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7229.2.S1_at	A	A1TS	POPTR_0006s23410	POPTR_0006s23410 (11)	scaffold_6:22143134-22143335(+) (11)	NA	Q9SMZ3	F-box only protein 13	AT4G33160.1	F-box family protein 	LOC_Os03g28130.1	"OsFBX94 - F-box domain containing protein, expressed"	Medtr3g104000.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7230.1.S1_at	A	A1TS	POPTR_0010s00710	POPTR_0010s00710 (9)	scaffold_10:403557-403607(-) (9)	NA	Q0WW40	F-box/kelch-repeat protein At1g16250	AT1G16250.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7230.1.S1_s_at	A	A1TS	POPTR_0010s00710	POPTR_0010s00710 (11)	scaffold_10:403191-403661(-) (11)	NA	Q0WW40	F-box/kelch-repeat protein At1g16250	AT1G16250.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7231.1.A1_at	A	A1TS	POPTR_0004s10170	POPTR_0004s10170 (11)	scaffold_4:8738138-8738430(+) (11)	NA	Q9M0X9	4-coumarate--CoA ligase-like 7	AT4G05160.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g05780.1	"4-coumarate--CoA ligase-like 7, putative, expressed"	Medtr8g043300.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.7234.1.S1_at	A	A1TS	POPTR_0006s13180	POPTR_0006s13180 (9)	scaffold_6:10414180-10414717(+) (9)	NA	NA	NA	AT2G42760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881); Has 170 Blast hits to 164 proteins in 34 species: Archae - 0; Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). 	NA	NA	Medtr2g097860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7236.1.S1_s_at	A	A3TS	POPTR_0005s14050	POPTR_0005s14050 (11)//POPTR_0005s14030 (10)//POPTR_0005s14040 (10)	scaffold_5:11054855-11055957(-) (10)//scaffold_5:11063740-11064803(-) (10)//scaffold_5:11080890-11081975(-) (11)	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23620.1	methyl esterase 1 	LOC_Os01g57770.1	"OsPOP4 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g018420.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7237.1.S1_at	A	A1TS	POPTR_0011s05150	POPTR_0011s05150 (11)	scaffold_11:5048839-5049284(-) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7239.1.A1_at	A	A1TS	POPTR_0001s34910	POPTR_0001s34910 (11)	scaffold_1:33129290-33131001(-) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT5G14720.1	Protein kinase superfamily protein 	LOC_Os06g29120.2	"STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g006330.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7240.1.A1_at	A	A1MA	POPTR_0001s47370	POPTR_0001s47370 (9)	scaffold_1:47593851-47594391(-) (9)	NA	Q8BJ03	Cytochrome c oxidase assembly protein COX15 homolog	AT5G56090.1	cytochrome c oxidase 15 	LOC_Os08g38720.1	"cytochrome c oxidase assembly protein COX15, putative, expressed"	Medtr5g104460.1	Cytochrome oxidase assembly 	GO:0006461|protein complex assembly	NA	GO:0016020|membrane
Ptp.7241.1.S1_s_at	A	A1TS	POPTR_0006s14150	POPTR_0006s14150 (11)	scaffold_6:11454113-11454972(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os07g42380.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g132790.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7241.2.S1_at	A	A1MS	POPTR_0006s14150	POPTR_0006s14150 (9)	scaffold_6:11455912-11456370(-) (9)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os07g42380.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g132790.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7242.1.S1_s_at	A	A1TS	POPTR_0015s07770	POPTR_0015s07770 (11)	scaffold_15:9064794-9065273(+) (11)	NA	Q8BL06	Inactive ubiquitin carboxyl-terminal hydrolase 54	AT3G47890.1	Ubiquitin carboxyl-terminal hydrolase-related protein 	LOC_Os03g06950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	NA	NA	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.7245.1.S1_at	A	A1TS	POPTR_0003s01350	POPTR_0003s01350 (11)	scaffold_3:1189502-1189581(+) (11)	NA	Q8RY89	Phosphatidylinositol-4-phosphate 5-kinase 8	AT1G60890.1	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os03g49510.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g137550.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
Ptp.7245.1.S1_s_at	A	A1TS	POPTR_0003s01350	POPTR_0003s01350 (11)	scaffold_3:1189259-1189464(+) (11)	NA	Q8RY89	Phosphatidylinositol-4-phosphate 5-kinase 8	AT1G60890.1	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os03g49510.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g137550.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
Ptp.7246.1.S1_at	A	A1TS	POPTR_0009s08420	POPTR_0009s08420 (11)	scaffold_9:7714170-7716572(+) (11)	NA	Q9C5C8	"Peptide methionine sulfoxide reductase B2, chloroplastic"	AT4G21860.2	methionine sulfoxide reductase B 2 	LOC_Os05g33510.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr4g121860.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
Ptp.7247.1.A1_at	A	A1TS	POPTR_0009s14100	POPTR_0009s14100 (11)	scaffold_9:11116610-11117939(-) (11)	NA	Q5TAQ9	DDB1- and CUL4-associated factor 8	AT4G35140.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g39760.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g111430.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7248.1.S1_s_at	A	A1TS	POPTR_0008s06210	POPTR_0008s06210 (11)	scaffold_8:3659643-3660012(-) (11)	NA	NA	NA	AT5G05960.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g33920.1	"LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7250.1.A1_s_at	A	A1TS	POPTR_0004s07240	POPTR_0004s07240 (11)	scaffold_4:5976752-5977706(-) (11)	NA	Q66GI4	"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial"	AT2G32230.1	proteinaceous RNase P 1 	LOC_Os02g17360.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g122420.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7252.1.S1_at	A	A1TS	POPTR_0014s18980	POPTR_0014s18980 (9)	scaffold_14:16639080-16639420(-) (9)	NA	Q969N2	GPI transamidase component PIG-T	AT3G07140.1	GPI transamidase component Gpi16 subunit family protein 	LOC_Os11g28980.1	"GPI transamidase component Gpi16 subunit family protein, putative, expressed"	NA	NA	NA	NA	GO:0042765|GPI-anchor transamidase complex||GO:0071212|subsynaptic reticulum
Ptp.7254.1.S1_at	A	A1TS	POPTR_0004s07700	POPTR_0004s07700 (11)	scaffold_4:6329468-6329860(+) (11)	NA	Q9FYR7	Scarecrow-like protein 8	AT5G52510.1	SCARECROW-like 8 	LOC_Os02g45760.1	"chitin-inducible gibberellin-responsive protein 2, putative, expressed"	AC146793_10.1	GRAS transcription factor AC146793.7 53118-50985 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7256.1.S1_at	A	A1TA	POPTR_0010s08800	POPTR_0010s08800 (9)	scaffold_10:9631020-9631417(+) (9)	NA	Q9ZUU3	Pentatricopeptide repeat-containing protein At2g37230	AT2G37230.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g02020.1	"pentatricopeptide, putative, expressed"	Medtr7g041080.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7257.1.A1_s_at	A	A1TS	POPTR_0015s04770	POPTR_0015s04770 (11)	scaffold_15:4973623-4973996(-) (11)	POPTR_0520s00220 (8)//POPTR_0012s04290 (7)	NA	NA	AT1G18290.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: root; Has 94 Blast hits to 94 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g03080.1	expressed protein	Medtr4g154720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7258.1.A1_at	A	A1TS	POPTR_0003s20480	POPTR_0003s20480 (10)	scaffold_3:18971985-18972437(+) (10)	NA	Q9LSF1	Serine/threonine-protein kinase OXI1	AT3G20830.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os08g39460.1	"AGC_PVPK_like_CDK8.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g086770.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7259.1.A1_s_at	A	A1TS	POPTR_0006s23110	POPTR_0006s23110 (11)	scaffold_6:21963354-21963818(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7260.1.S1_at	A	A1TA	POPTR_0004s21710	POPTR_0004s21710 (10)	scaffold_4:20758317-20758842(-) (11)	NA	A5A7I7	Calcium-dependent protein kinase 4	AT2G17290.1	Calcium-dependent protein kinase family protein 	LOC_Os04g49510.1	"CAMK_CAMK_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g106840.2	Protein kinase; Calcium-binding EF-hand; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7261.1.S1_at	A	A1TS	POPTR_0008s11810	POPTR_0008s11810 (10)	scaffold_8:7563588-7564112(-) (10)	NA	NA	NA	AT1G68580.2	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os08g33420.1	"agenet domain containing protein, expressed"	Medtr5g068170.1	Bromo adjacent region; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
Ptp.7262.1.S1_s_at	A	A1TS	POPTR_0006s21470	POPTR_0006s21470 (11)	scaffold_6:20538251-20538729(-) (11)	NA	NA	NA	AT2G35880.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os11g36340.1	"lymphoid organ expressed yellow head virus receptor protein, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7263.2.A1_a_at	A	A1TS	POPTR_0011s15160	POPTR_0011s15160 (9)	scaffold_11:17307031-17308114(-) (9)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G64700.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g01570.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g144230.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.7265.1.S1_s_at	A	A1TS	POPTR_0005s15840	POPTR_0005s15840 (11)	scaffold_5:12462336-12465079(+) (11)	NA	Q6NRL0	PrdX-deacylase domain-containing protein 1	AT1G44835.2	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g52880.2	"ybaK/prolyl-tRNA synthetase family protein, putative, expressed"	Medtr3g097700.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7267.1.A1_a_at	A	A1TS	POPTR_0015s10090	POPTR_0015s10090 (11)	scaffold_15:11114658-11115021(-) (11)	NA	Q9SJM0	Callose synthase 10	AT2G36850.1	glucan synthase-like 8 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.7268.1.S1_at	A	A1TS	POPTR_0006s21320	POPTR_0006s21320 (9)	scaffold_6:20386415-20389444(+) (9)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT5G06570.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g06880.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.7271.1.S1_at	A	A1MS	POPTR_0002s16120	POPTR_0002s16120 (10)	scaffold_2:12023030-12023415(-) (10)	NA	NA	NA	AT4G00450.1	RNA polymerase II transcription mediators 	LOC_Os07g45400.1	expressed protein	Medtr7g087340.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7272.1.S1_at	A	A1TS	POPTR_0016s07650	POPTR_0016s07650 (11)	scaffold_16:5483425-5483553(-) (11)	NA	O82039	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	AT3G11540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44510.1	"UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7275.1.S1_s_at	A	A1TS	POPTR_0016s05500	POPTR_0016s05500 (11)	scaffold_16:3437650-3437901(+) (11)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7276.1.S1_at	A	A1TS	POPTR_0012s07660	POPTR_0012s07660 (10)	scaffold_12:8580088-8580191(+) (10)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7278.1.S1_at	A	A1TS	POPTR_0002s01610	POPTR_0002s01610 (11)	scaffold_2:860686-861260(-) (11)	NA	Q7JUR6	Protein GDAP2 homolog	AT4G35750.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os04g47330.1	"rho-GTPase-activating protein-related, putative, expressed"	Medtr5g023170.1	"Rho-GTPase-activating protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7279.1.A1_at	A	A1TS	POPTR_0013s05850	POPTR_0013s05850 (11)	scaffold_13:4207872-4207907(-) (11)	NA	O50008	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.7279.1.A1_s_at	A	A2TS	POPTR_0013s05850	POPTR_0013s05850 (11)//POPTR_0019s05430 (10)	scaffold_13:4207954-4208208(-) (11)//scaffold_19:5775687-5775939(-) (10)	NA	O50008	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
Ptp.728.1.A1_at	A	A1TS	POPTR_0019s07270	POPTR_0019s07270 (11)	scaffold_19:8250209-8250449(+) (11)	NA	P59278	Uncharacterized protein At1g51745	AT3G03140.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os02g47170.1	expressed protein	Medtr4g106850.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7280.1.S1_at	A	A1TS	POPTR_0009s09390	POPTR_0009s09390 (11)	scaffold_9:8328908-8330299(-) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT3G43740.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g32580.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g005220.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.7281.1.A1_at	A	A1TS	POPTR_0006s27890	POPTR_0006s27890 (11)	scaffold_6:25718311-25718677(-) (11)	NA	Q5QQ50	Xylosyltransferase 2	AT2G37585.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	AC229695_3.1	"Glycosyl transferase, family 14 AC229695.5 13205-18395 E EGN_Mt090430 200"	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.7285.1.S1_at	A	A1TS	POPTR_0012s02140	POPTR_0012s02140 (9)	scaffold_12:1779505-1780039(-) (9)	NA	O35685	Nuclear migration protein nudC	AT5G53400.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7287.1.S1_at	A	A1MS	POPTR_0018s06690	POPTR_0018s06690 (10)	scaffold_18:6730100-6730583(-) (10)	NA	Q8GYD2	Meiotic nuclear division protein 1 homolog	AT4G29170.1	Mnd1 family protein 	LOC_Os09g10850.1	"meiotic coiled-coil protein 7, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7288.1.S1_at	A	A1MS	POPTR_0006s05860	POPTR_0006s05860 (10)	scaffold_6:4125955-4126329(-) (10)	NA	Q69QZ0	Probable protein phosphatase 2C 27	AT2G25620.1	DNA-binding protein phosphatase 1 	LOC_Os02g55560.1	"protein phosphatase 2C, putative, expressed"	Medtr8g122540.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7289.1.S1_at	A	A1TS	POPTR_0001s30690	POPTR_0001s30690 (11)	scaffold_1:29158680-29165200(+) (11)//scaffold_1:29165116-29165666(+) (10)	POPTR_0001s30680 (8)	NA	NA	AT2G15220.1	Plant basic secretory protein (BSP) family protein 	LOC_Os10g34920.1	"secretory protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7290.1.S1_at	A	A1MS	POPTR_0009s08190	POPTR_0009s08190 (9)	scaffold_9:7537953-7538392(-) (9)	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os03g48060.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	NA	GO:0003824|catalytic activity	NA
Ptp.7290.1.S1_s_at	A	A1TS	POPTR_0009s08190	POPTR_0009s08190 (11)	scaffold_9:7538289-7538492(-) (11)	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os03g48060.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	NA	GO:0003824|catalytic activity	NA
Ptp.7290.2.S1_s_at	A	A1TS	POPTR_0009s08190	POPTR_0009s08190 (11)	scaffold_9:7536034-7536315(-) (11)	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os03g48060.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	NA	GO:0003824|catalytic activity	NA
Ptp.7295.1.S1_at	A	A1TS	POPTR_0006s01900	POPTR_0006s01900 (11)	scaffold_6:1142795-1143632(+) (11)	NA	NA	NA	AT4G17220.1	microtubule-associated proteins 70-5 	LOC_Os02g50320.2	"ATMAP70 protein, putative, expressed"	Medtr8g148820.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7296.1.S1_at	A	A1TS	POPTR_0013s13400	POPTR_0013s13400 (10)	scaffold_13:13889472-13889903(+) (10)	NA	Q7Y223	"Mannan endo-1,4-beta-mannosidase 2"	AT2G20680.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g54300.1	OsMan02 - Endo-Beta-Mannanase	Medtr4g107960.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7299.1.S1_s_at	A	A1TS	POPTR_0010s20360	POPTR_0010s20360 (11)	scaffold_10:17988443-17988839(+) (11)	NA	NA	NA	AT5G05960.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g62980.1	"LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.73.1.A1_s_at	A	A1TS	POPTR_0014s16090	POPTR_0014s16090 (11)	scaffold_14:12163075-12163193(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.730.1.A1_at	A	A1TS	POPTR_0005s14820	POPTR_0005s14820 (11)	scaffold_5:11746889-11748462(-) (11)	NA	A4QP78	UPF0760 protein C2orf29 homolog	AT5G18420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g13694.1	"AGAP007117-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7302.1.S1_s_at	A	A1TS	POPTR_0015s03350	POPTR_0015s03350 (11)	scaffold_15:2864601-2864909(+) (11)	NA	NA	NA	AT1G18470.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7304.1.S1_at	A	A1MA	POPTR_0008s03960	POPTR_0008s03960 (9)	scaffold_8:2183731-2184171(+) (9)	NA	NA	NA	AT1G13810.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os08g13890.1	"exonuclease, putative, expressed"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7305.1.S1_a_at	A	A1MS	POPTR_0014s08020	POPTR_0014s08020 (11)	scaffold_14:5950568-5950631(-) (11)	NA	Q54U49	Putative mediator of RNA polymerase II transcription subunit 12	AT4G00450.1	RNA polymerase II transcription mediators 	LOC_Os07g45400.1	expressed protein	Medtr7g087340.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.7305.1.S1_at	A	A1MS	POPTR_0014s08020	POPTR_0014s08020 (10)	scaffold_14:5950276-5950677(-) (10)	NA	Q54U49	Putative mediator of RNA polymerase II transcription subunit 12	AT4G00450.1	RNA polymerase II transcription mediators 	LOC_Os07g45400.1	expressed protein	Medtr7g087340.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.7308.1.S1_at	A	A1TS	POPTR_0018s02540	POPTR_0018s02540 (9)	scaffold_18:2324346-2324810(+) (9)	NA	Q753Q4	DNA-directed RNA polymerase II subunit RPB2	AT3G23780.2	nuclear RNA polymerase D2A 	LOC_Os04g54840.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr3g138340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.7311.1.S1_s_at	A	A2TS	POPTR_0018s13020	POPTR_0018s13020 (11)//POPTR_0018s13040 (11)	scaffold_18:13490051-13490107(-) (11)//scaffold_18:13504012-13504068(-) (11)	NA	NA	NA	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr8g120620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7312.1.S1_at	A	A1TS	POPTR_0018s11250	POPTR_0018s11250 (9)	scaffold_18:12052435-12052636(-) (9)	NA	NA	NA	AT5G57830.1	"Protein of unknown function, DUF593 "	LOC_Os08g34340.1	"DUF593 domain containing protein, expressed"	Medtr8g144910.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7314.1.S1_at	A	A1MS	POPTR_0003s02830	POPTR_0003s02830 (9)	scaffold_3:2930608-2931060(-) (9)	NA	Q9H1D9	DNA-directed RNA polymerase III subunit RPC6	AT5G23710.1	DNA binding;DNA-directed RNA polymerases 	NA	NA	Medtr7g020650.1	Copper fist DNA-binding; RNA polymerase Rpc34 subunit 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7316.1.S1_at	A	A1MS	POPTR_0013s07790	POPTR_0013s07790 (9)	scaffold_13:6625994-6626440(+) (9)	POPTR_0013s07820 (7)	Q6P643	THO complex subunit 7 homolog	AT5G16790.1	Tho complex subunit 7/Mft1p 	LOC_Os08g06360.1	"THO complex subunit 7, putative, expressed"	Medtr2g018950.1	Protein of unknown function DUF783 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7318.1.S1_at	A	A1MS	POPTR_0006s06040	POPTR_0006s06040 (9)	scaffold_6:4298818-4299347(-) (9)	NA	Q8N1E6	F-box/LRR-repeat protein 14	AT1G15740.1	Leucine-rich repeat family protein 	LOC_Os04g42470.4	"regulatory subunit, putative, expressed"	Medtr8g122250.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
Ptp.732.1.A1_at	A	A1TS	POPTR_0001s46710	POPTR_0001s46710 (11)	scaffold_1:47122282-47122808(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.732.2.S1_at	A	A1TS	POPTR_0001s46710	POPTR_0001s46710 (11)	scaffold_1:47121437-47121980(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT2G34790.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_19.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 68861-70819 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.7320.1.S1_a_at	A	A1TS	POPTR_0015s01600	POPTR_0015s01600 (11)	scaffold_15:1002968-1003005(+) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT5G24240.1	Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr3g124030.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
Ptp.7321.1.S1_at	A	A1MS	POPTR_0010s21650	POPTR_0010s21650 (10)	scaffold_10:18853027-18853551(-) (10)	NA	NA	NA	AT2G28710.1	C2H2-type zinc finger family protein 	LOC_Os03g17150.1	"ZOS3-09 - C2H2 zinc finger protein, expressed"	Medtr7g024970.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.7326.1.S1_at	A	A1TS	POPTR_0009s13550	POPTR_0009s13550 (11)	scaffold_9:10759094-10759831(+) (11)	NA	Q4I8E9	Protein PNS1	AT4G38640.1	Plasma-membrane choline transporter family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7327.1.S1_at	A	A1TS	POPTR_0001s10370	POPTR_0001s10370 (11)	scaffold_1:8054527-8056159(-) (11)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7327.1.S1_s_at	A	A1TS	POPTR_0001s10370	POPTR_0001s10370 (11)	scaffold_1:8054627-8056076(-) (11)	POPTR_0003s13730 (8)	Q54MZ4	Mitochondrial substrate carrier family protein B	AT4G01100.1	adenine nucleotide transporter 1 	LOC_Os05g50840.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g009500.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7328.1.A1_at	A	A1TS	POPTR_0002s20470	POPTR_0002s20470 (11)	scaffold_2:16511312-16511730(+) (11)	NA	NA	NA	AT1G02816.1	"Protein of unknown function, DUF538 "	LOC_Os05g29920.1	expressed protein	Medtr1g108140.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7329.1.S1_at	A	A1TS	POPTR_0009s01320	POPTR_0009s01320 (11)	scaffold_9:1587150-1587187(+) (11)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.733.1.A1_at	A	A1TS	POPTR_0004s19930	POPTR_0004s19930 (10)	scaffold_4:19584015-19584056(-) (10)	NA	O22165	Probable ribosome biogenesis protein RLP24	AT2G44860.2	Ribosomal protein L24e family protein 	LOC_Os07g19190.1	"ribosomal protein L24, putative, expressed"	Medtr4g073290.1	TRASH 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7335.1.S1_at	A	A1TS	POPTR_0006s04770	POPTR_0006s04770 (11)	scaffold_6:3308001-3308512(+) (11)	NA	O22230	Heat stress transcription factor B-3	AT2G41690.1	heat shock transcription factor B3 	LOC_Os04g48030.1	"heat stress transcription factor B-1, putative, expressed"	Medtr7g108580.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.7337.1.S1_at	A	A2MS	POPTR_0012s06280	POPTR_0012s06280 (10)//POPTR_0012s06226 (9)	scaffold_12:6314695-6315260(+) (9)//scaffold_12:6486968-6487503(-) (10)	NA	P50830	Uncharacterized ATP-dependent helicase yprA	AT5G08110.1	nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases 	LOC_Os02g02150.1	"ATP-dependent helicase HRQ1, putative, expressed"	NA	NA	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.7338.1.S1_s_at	A	A1TS	POPTR_0017s11820	POPTR_0017s11820 (11)	scaffold_17:11711311-11713315(-) (11)	NA	Q8IYB8	"ATP-dependent RNA helicase SUPV3L1, mitochondrial"	AT5G39840.1	"ATP-dependent RNA helicase, mitochondrial, putative "	LOC_Os04g38630.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g006820.1	"Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.734.1.A1_at	A	A1TS	POPTR_0011s09340	POPTR_0011s09340 (11)	scaffold_11:11585280-11585349(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.7340.1.S1_at	A	A1TS	POPTR_0013s14380	POPTR_0013s14380 (10)	scaffold_13:14595768-14596115(-) (10)	NA	NA	NA	AT4G28240.1	Wound-responsive family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7341.1.S1_s_at	A	A1TS	POPTR_0016s10110	POPTR_0016s10110 (9)	scaffold_16:8267430-8267480(+) (9)	NA	NA	NA	AT3G53990.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os05g37970.3	"universal stress protein domain containing protein, putative, expressed"	Medtr7g071220.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.7341.3.S1_at	A	A1TA	POPTR_0004s19500	POPTR_0004s19500 (10)	scaffold_4:19327581-19327758(+) (10)	NA	Q9ZNU9	Zinc finger A20 and AN1 domain-containing stress-associated protein 3	AT2G27580.2	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g069850.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.7344.1.S1_s_at	A	A2TS	POPTR_0002s14080	POPTR_0014s05100 (11)//POPTR_0002s14080 (11)	scaffold_14:3886830-3889096(+) (11)//scaffold_2:10427472-10429858(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.1	casein kinase II  beta chain 1 	LOC_Os10g41520.1	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.7345.1.S1_at	A	A1TS	POPTR_0016s14600	POPTR_0016s14600 (10)	scaffold_16:13779005-13779470(+) (10)	NA	Q6C4X5	UDP-galactose transporter homolog 1	AT1G14360.1	UDP-galactose transporter 3 	LOC_Os06g39260.1	"solute carrier family 35 member B1, putative, expressed"	Medtr5g039930.1	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7345.1.S1_s_at	A	A1TS	POPTR_0016s14600	POPTR_0016s14600 (11)	scaffold_16:13778947-13779286(+) (11)	NA	Q6C4X5	UDP-galactose transporter homolog 1	AT1G14360.1	UDP-galactose transporter 3 	LOC_Os06g39260.1	"solute carrier family 35 member B1, putative, expressed"	Medtr5g039930.1	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7349.1.S1_at	A	A1MS	POPTR_0016s02900	POPTR_0016s02900 (9)	scaffold_16:1449731-1450131(+) (9)	NA	Q62383	Transcription elongation factor SPT6	AT1G65440.2	global transcription factor group B1 	LOC_Os05g41510.1	"SH2 motif, putative, expressed"	Medtr7g105590.1	"Alcohol dehydrogenase, zinc-containing; RNA binding S1; Resolvase, RNase H-like fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.735.1.S1_at	A	A1MS	POPTR_0006s14880	POPTR_0006s14880 (10)	scaffold_6:12359388-12359848(-) (10)	NA	NA	NA	AT4G29735.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0197 (InterPro:IPR007915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g37070.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7352.1.S1_s_at	A	A1TS	POPTR_0009s09130	POPTR_0009s09130 (9)	scaffold_9:8182044-8182822(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g21020.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7355.1.S1_at	A	A1TS	POPTR_0014s07900	POPTR_0014s07900 (11)	scaffold_14:5872428-5872815(-) (11)	NA	P58137	Acyl-coenzyme A thioesterase 8	AT1G01710.1	Acyl-CoA thioesterase family protein 	LOC_Os04g47120.1	"acyl-CoA thioesterase 2, putative, expressed"	NA	NA	GO:0006637|acyl-CoA metabolic process	GO:0016291|acyl-CoA thioesterase activity	NA
Ptp.7355.1.S1_s_at	A	A1TS	POPTR_0014s07900	POPTR_0014s07900 (11)	scaffold_14:5868662-5872396(-) (11)	NA	P58137	Acyl-coenzyme A thioesterase 8	AT1G01710.1	Acyl-CoA thioesterase family protein 	LOC_Os04g47120.1	"acyl-CoA thioesterase 2, putative, expressed"	NA	NA	GO:0006637|acyl-CoA metabolic process	GO:0016291|acyl-CoA thioesterase activity	NA
Ptp.7357.1.S1_at	A	A1TS	POPTR_0007s11090	POPTR_0007s11090 (10)	scaffold_7:11353610-11353667(-) (10)	NA	NA	NA	AT3G50370.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). 	NA	NA	CU571152_13.1	hypothetical protein CU571152.5 45352-54530 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7357.1.S1_s_at	A	A1TS	POPTR_0007s11090	POPTR_0007s11090 (11)	scaffold_7:11353114-11353469(-) (11)	NA	NA	NA	AT3G50370.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). 	NA	NA	CU571152_13.1	hypothetical protein CU571152.5 45352-54530 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7358.1.S1_at	A	A1TS	POPTR_0014s15270	POPTR_0014s15270 (10)	scaffold_14:11344962-11347355(+) (10)	NA	P79051	ATP-dependent helicase rhp16	AT1G05120.1	Helicase protein with RING/U-box domain 	LOC_Os07g32730.1	"DNA repair protein rhp16, putative, expressed"	Medtr4g064720.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.7359.1.S1_at	A	A1TS	POPTR_0008s10880	POPTR_0008s10880 (11)	scaffold_8:6846024-6846566(-) (11)	NA	NA	NA	AT1G13480.1	Protein of unknown function (DUF1262) 	LOC_Os08g31880.1	conserved hypothetical protein	Medtr5g036800.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.736.2.A1_at	A	A1TS	POPTR_0005s02670	POPTR_0005s02670 (11)	scaffold_5:1706619-1706938(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.3	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7360.2.A1_a_at	A	A1TS	POPTR_0005s05290	POPTR_0005s05290 (11)	scaffold_5:3498683-3499366(-) (11)	POPTR_0013s03630 (6)	Q5M7J9	Tetratricopeptide repeat protein 35	AT3G04830.1	Protein prenylyltransferase superfamily protein 	LOC_Os02g03470.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr7g140640.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7361.1.S1_s_at	A	A1TS	POPTR_0009s13440	POPTR_0009s13440 (11)	scaffold_9:10680677-10680880(+) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022110.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.7363.1.S1_at	A	A1TS	POPTR_0007s04100	POPTR_0007s04100 (11)	scaffold_7:2459315-2459979(-) (11)	NA	NA	NA	AT1G74880.1	NAD(P)H:plastoquinone dehydrogenase complex subunit O 	LOC_Os01g72950.1	expressed protein	Medtr3g143350.1	"NDH-O, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7363.1.S1_s_at	A	A1TS	POPTR_0007s04100	POPTR_0007s04100 (11)	scaffold_7:2459976-2460928(-) (11)	NA	NA	NA	AT1G74880.1	NAD(P)H:plastoquinone dehydrogenase complex subunit O 	LOC_Os01g72950.1	expressed protein	Medtr3g143350.1	"NDH-O, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7364.1.S1_a_at	A	A1TS	POPTR_0015s04210	POPTR_0015s04210 (10)	scaffold_15:4243270-4243921(-) (10)	NA	Q9FKR0	Probable S-adenosylmethionine-dependent methyltransferase At5g38780	AT1G68040.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g21820.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr1g137790.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.7369.1.S1_at	A	A1MA	POPTR_0004s10440	POPTR_0004s10440 (9)	scaffold_4:8994640-8995003(+) (9)	NA	Q8K4H1	Probable arylformamidase	AT5G15860.1	prenylcysteine methylesterase 	LOC_Os05g50170.2	"ATPCME, putative, expressed"	AC233657_30.1	"Carboxylesterase, type B AC233657.1 159050-155204 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7370.1.S1_at	A	A1TS	POPTR_0014s15500	POPTR_0014s15500 (10)	scaffold_14:11543255-11544714(-) (10)	NA	NA	NA	AT2G32640.1	Lycopene beta/epsilon cyclase protein 	LOC_Os08g32630.1	"FAD dependent oxidoreductase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7372.1.S1_at	A	A1TS	POPTR_0019s15170	POPTR_0019s15170 (10)	scaffold_19:15740620-15740993(+) (10)	NA	Q2V0W1	Pheophorbidase	AT3G10870.1	methyl esterase 17 	LOC_Os11g02570.1	"esterase, putative, expressed"	Medtr5g076890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7372.2.S1_a_at	A	A1TS	POPTR_0019s15170	POPTR_0019s15170 (9)	scaffold_19:15741117-15741647(+) (9)	NA	Q2V0W1	Pheophorbidase	AT3G10870.1	methyl esterase 17 	LOC_Os11g02570.1	"esterase, putative, expressed"	Medtr5g076890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7372.2.S1_at	A	A1TS	POPTR_0019s15170	POPTR_0019s15170 (11)	scaffold_19:15741584-15742090(+) (11)	NA	Q2V0W1	Pheophorbidase	AT3G10870.1	methyl esterase 17 	LOC_Os11g02570.1	"esterase, putative, expressed"	Medtr5g076890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7373.1.S1_s_at	A	A1TS	POPTR_0001s09070	POPTR_0001s09070 (11)	scaffold_1:6941930-6943016(-) (11)	NA	NA	NA	AT1G63260.2	tetraspanin10 	LOC_Os10g35980.1	"tetraspanin family protein, putative, expressed"	Medtr8g078110.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.7375.2.A1_at	A	A1MA	POPTR_0002s05810	POPTR_0002s05810 (11)	scaffold_2:3807974-3808221(+) (11)	NA	NA	NA	AT4G39235.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g51459.1	conserved hypothetical protein	Medtr3g005030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7376.1.S1_a_at	A	A2TS	POPTR_0018s10330	POPTR_0018s10330 (11)//POPTR_0018s10320 (9)	scaffold_18:11254660-11261155(+) (11)//scaffold_18:11260769-11261147(+) (9)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48200.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.7377.1.S1_at	A	A1TS	POPTR_0002s11020	POPTR_0002s11020 (11)	scaffold_2:8026037-8026564(-) (11)	NA	Q3EDF8	Pentatricopeptide repeat-containing protein At1g09900	AT1G09900.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os02g35750.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g093590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7378.1.S1_at	A	A1TS	POPTR_0002s18970	POPTR_0002s18970 (10)	scaffold_2:14864650-14864969(+) (10)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7379.2.A1_a_at	A	A1TS	POPTR_0002s09750	POPTR_0002s09750 (11)	scaffold_2:6993693-6994361(+) (11)	NA	Q9S9Z7	Probable protein phosphatase 2C 10	AT1G34750.1	Protein phosphatase 2C family protein 	LOC_Os04g37904.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.738.1.A1_at	A	A1TS	POPTR_0005s24060	POPTR_0005s24060 (11)	scaffold_5:22719444-22719843(-) (11)	NA	Q9C889	PRA1 family protein F2	AT1G55190.1	PRA1 (Prenylated rab acceptor) family protein 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7380.1.S1_s_at	A	A1TS	POPTR_0007s01460	POPTR_0007s01460 (11)	scaffold_7:821512-823720(-) (11)	NA	Q9NU19	TBC1 domain family member 22B	AT2G30710.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g34040.1	"TBC domain containing protein, expressed"	Medtr2g120560.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.7382.1.S1_at	A	A2TS	POPTR_0006s21080	POPTR_0016s06190 (9)//POPTR_0006s21080 (9)	scaffold_16:4141639-4142011(+) (9)//scaffold_6:20179225-20179645(+) (9)	NA	P48578	Serine/threonine-protein phosphatase PP2A-3 catalytic subunit	AT3G58500.1	protein phosphatase 2A-4 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	AC235488_34.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase AC235488.1 160871-167050 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
Ptp.7383.1.S1_s_at	A	A1TS	POPTR_0004s20830	POPTR_0004s20830 (11)	scaffold_4:20210700-20211260(+) (11)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20780.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.7385.1.S1_at	A	A1TS	POPTR_0018s02840	POPTR_0018s02840 (9)	scaffold_18:2503983-2504259(+) (9)	NA	Q6K687	Zinc finger CCCH domain-containing protein 18	AT2G24830.1	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein 	LOC_Os02g55000.1	"zinc finger CCCH-type with G patch domain-containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.7386.1.S1_at	A	A1TS	POPTR_0005s25770	POPTR_0005s25770 (9)	scaffold_5:23964794-23965830(-) (9)	NA	NA	NA	AT5G39590.1	TLD-domain containing nucleolar protein 	LOC_Os04g56790.1	"TLD family protein, putative, expressed"	Medtr3g144020.1	TLDc 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7387.1.S1_s_at	A	A1TS	POPTR_0002s19370	POPTR_0002s19370 (11)	scaffold_2:15332020-15332678(-) (11)	NA	NA	NA	AT3G62330.1	Zinc knuckle (CCHC-type) family protein 	LOC_Os01g14920.1	"zinc knuckle family protein, putative, expressed"	Medtr7g133280.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.7389.1.S1_at	A	A2TS	POPTR_0013s04640	POPTR_0019s03850 (11)//POPTR_0013s04640 (11)	scaffold_13:3195386-3195764(+) (11)//scaffold_19:3903170-3903552(+) (11)	NA	Q54MZ3	Anaphase-promoting complex subunit cdc20	AT4G33270.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g47180.2	"WD repeat-containing protein, putative, expressed"	Medtr5g008110.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.739.1.A1_at	A	A1TS	POPTR_0001s47180	POPTR_0001s47180 (11)	scaffold_1:47462990-47463034(-) (11)	NA	O81635	Kinesin-4	AT3G44730.1	kinesin-like protein 1 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr3g080190.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.7393.1.S1_at	A	A1TS	POPTR_0002s20270	POPTR_0002s20270 (11)	scaffold_2:16256253-16256766(-) (11)	NA	P42736	Ethylene-responsive transcription factor RAP2-3	AT3G16770.1	ethylene-responsive element binding protein 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr1g107940.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.7396.1.S1_at	A	A1TS	POPTR_0005s22700	POPTR_0005s22700 (10)	scaffold_5:21593853-21594357(+) (10)	NA	NA	NA	AT2G30880.1	Pleckstrin homology (PH) domain-containing protein 	LOC_Os03g46340.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g098210.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7396.2.S1_at	A	A1TS	POPTR_0005s22700	POPTR_0005s22700 (11)	scaffold_5:21587382-21592553(+) (11)	NA	NA	NA	AT2G30880.1	Pleckstrin homology (PH) domain-containing protein 	LOC_Os03g46340.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g098210.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7397.1.S1_at	A	A1MA	POPTR_0008s21210	POPTR_0008s21210 (9)	scaffold_8:15409437-15409671(+) (9)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g20650.1	"OsFBX323 - F-box domain containing protein, expressed"	Medtr5g027540.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.740.1.A1_at	A	A1TS	POPTR_0014s04230	POPTR_0014s04230 (11)	scaffold_14:3323653-3324943(-) (11)	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	NA	GO:0004721|phosphoprotein phosphatase activity	NA
Ptp.7402.1.S1_at	A	A2TS	POPTR_0015s08350	POPTR_0704s00200 (11)//POPTR_0015s08350 (11)	scaffold_15:9603998-9604083(+) (11)//scaffold_704:3680-3765(-) (11)	NA	NA	NA	AT5G62575.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G47833.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7403.1.A1_at	A	A1TS	POPTR_0002s24210	POPTR_0002s24210 (11)	scaffold_2:21631021-21631445(+) (11)	NA	Q8LDV3	"Uncharacterized protein At4g13200, chloroplastic"	AT4G13200.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 97 Blast hits to 97 proteins in 46 species: Archae - 0; Bacteria - 65; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os04g43350.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7404.1.S1_at	A	A1TS	POPTR_0003s12880	POPTR_0003s12880 (11)	scaffold_3:13326446-13327560(+) (11)	NA	Q9HBH5	Retinol dehydrogenase 14	AT4G23430.3	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g40030.8	"short chain dehydrogenase/reductase protein, putative, expressed"	Medtr3g114440.2	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7405.1.S1_at	A	A1TS	POPTR_0011s05250	POPTR_0011s05250 (11)	scaffold_11:5135895-5136823(+) (9)	NA	Q05758	"Ketol-acid reductoisomerase, chloroplastic"	AT3G58610.3	ketol-acid reductoisomerase 	LOC_Os05g49800.1	"ketol-acid reductoisomerase, chloroplast precursor, putative, expressed"	Medtr4g109610.1	Acetohydroxy acid isomeroreductase; ; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009082|branched chain family amino acid biosynthetic process	GO:0004455|ketol-acid reductoisomerase activity	NA
Ptp.7408.1.A1_a_at	A	A1TS	POPTR_0001s25460	POPTR_0001s25460 (11)	scaffold_1:24578308-24578464(+) (11)	NA	Q304B9	Neutral ceramidase	AT1G07380.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7408.3.A1_at	A	A1TS	POPTR_0001s25460	POPTR_0001s25460 (10)	scaffold_1:24574723-24578427(+) (10)	NA	Q304B9	Neutral ceramidase	AT1G07380.1	Neutral/alkaline non-lysosomal ceramidase 	LOC_Os01g43520.2	"neutral ceramidase precursor, putative, expressed"	Medtr5g104550.1	Neutral/alkaline nonlysosomal ceramidase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7409.1.S1_s_at	A	A1TS	POPTR_0003s21230	POPTR_0003s21230 (11)	scaffold_3:19478446-19478760(-) (11)	NA	Q9R1C0	Transcription initiation factor TFIID subunit 7	AT1G55300.1	TBP-associated factor 7 	LOC_Os05g28010.1	"TATA-binding protein-associated factor TAFII55 family protein, putative, expressed"	Medtr3g105320.1	TAFII55 protein conserved region 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0016251|general RNA polymerase II transcription factor activity	GO:0005669|transcription factor TFIID complex
Ptp.7410.1.S1_at	A	A1TS	POPTR_0009s14710	POPTR_0009s14710 (9)	scaffold_9:11461608-11461977(+) (9)	NA	Q9LXN4	Protein HIRA	AT3G44530.2	homolog of histone chaperone HIRA 	LOC_Os09g39420.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC235092_11.1	TUP1-like enhancer of split AC235092.1 68028-61680 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.7411.1.S1_at	A	A1TS	POPTR_0007s04980	POPTR_0007s04980 (9)	scaffold_7:3162955-3163106(-) (9)	POPTR_0005s07250 (6)	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os08g37605.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr2g009300.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
Ptp.7411.1.S1_s_at	A	A1TS	POPTR_0007s04980	POPTR_0007s04980 (10)	scaffold_7:3162644-3162933(-) (10)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os08g37605.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr2g009300.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
Ptp.7412.1.S1_at	A	A1TS	POPTR_0002s13990	POPTR_0002s13990 (10)	scaffold_2:10377546-10379268(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7415.1.S1_at	A	A1TS	POPTR_0001s10960	POPTR_0001s10960 (11)	scaffold_1:8498431-8498935(+) (11)	NA	Q84TI6	Cyclin-dependent kinase E-1	AT5G63610.1	cyclin-dependent kinase E;1 	LOC_Os10g42950.1	"cyclin-dependent kinase E-1, putative, expressed"	Medtr3g142590.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7417.1.S1_s_at	A	A1TS	POPTR_0002s10460	POPTR_0002s10460 (11)	scaffold_2:7550982-7551277(-) (11)	NA	Q54PY7	Probable mitochondrial 2-oxoglutarate/malate carrier protein	AT4G24570.1	dicarboxylate carrier 2 	LOC_Os08g37370.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g149100.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7418.1.S1_at	A	A1TS	POPTR_0002s05730	POPTR_0002s05730 (10)	scaffold_2:3757874-3758266(+) (10)	NA	NA	NA	NA	NA	LOC_Os07g06644.3	expressed protein	Medtr5g097840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.742.1.A1_at	A	A1TS	POPTR_0009s00680	POPTR_0009s00680 (11)	scaffold_9:758464-760401(-) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G22850.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7420.1.S1_s_at	A	A1TS	POPTR_0001s14030	POPTR_0001s14030 (11)	scaffold_1:11041821-11041925(-) (11)	NA	Q0MQ90	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	AT1G04630.1	GRIM-19 protein 	LOC_Os03g09210.1	"NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7421.1.S1_s_at	A	A1TS	POPTR_0006s06620	POPTR_0006s06620 (11)	scaffold_6:4807689-4807958(-) (11)	NA	P29602	Cucumber peeling cupredoxin	AT5G20230.1	blue-copper-binding protein 	LOC_Os05g49580.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g120900.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.7422.1.S1_at	A	A1TS	POPTR_0001s10530	POPTR_0001s10530 (11)	scaffold_1:8166852-8168136(-) (11)	NA	Q9FGM1	Abscisic acid receptor PYL8	AT5G53160.2	regulatory components of ABA receptor 3 	LOC_Os02g15640.1	"CAPIP1, putative, expressed"	AC233680_24.1	"AT-rich element binding factor 3, putative AC233680.1 100844-103170 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7423.1.A1_at	A	A1TS	POPTR_0001s41150	POPTR_0001s41150 (11)	scaffold_1:40794470-40795647(+) (11)	NA	Q6MD00	3-deoxy-manno-octulosonate cytidylyltransferase	AT1G53000.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os05g48750.1	"3-deoxy-manno-octulosonate cytidylyltransferase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0009103|lipopolysaccharide biosynthetic process	NA	NA
Ptp.7424.1.S1_at	A	A1TS	POPTR_0001s32970	POPTR_0001s32970 (11)	scaffold_1:31226482-31228095(-) (11)	NA	Q9SDS7	V-type proton ATPase subunit C	AT1G12840.1	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) 	LOC_Os05g51530.2	"vacuolar ATP synthase subunit C, putative, expressed"	Medtr7g096730.1	V-ATPase subunit C 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	"GO:0033180|""proton-transporting V-type ATPase, V1 domain"""
Ptp.7429.1.S1_s_at	A	A1TS	POPTR_0017s04720	POPTR_0017s04720 (11)	scaffold_17:3618998-3619128(-) (11)	NA	Q6LA43	Two-component response regulator-like APRR2	AT2G20570.1	GBF's pro-rich region-interacting factor 1 	LOC_Os06g24070.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr4g108850.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7433.1.S1_at	A	A1TS	POPTR_0019s05950	POPTR_0019s05950 (11)	scaffold_19:6365482-6365517(-) (11)	NA	NA	NA	AT5G17170.1	rubredoxin family protein 	LOC_Os08g06530.1	"rubredoxin family protein, putative, expressed"	Medtr5g008150.1	PDZ/DHR/GLGF; Rubredoxin-type Fe(Cys)4 protein 	NA	GO:0046872|metal ion binding||GO:0009055|electron carrier activity	NA
Ptp.7433.1.S1_s_at	A	A1TS	POPTR_0019s05950	POPTR_0019s05950 (11)	scaffold_19:6365625-6366284(-) (11)	NA	NA	NA	AT5G17170.1	rubredoxin family protein 	LOC_Os08g06530.1	"rubredoxin family protein, putative, expressed"	Medtr5g008150.1	PDZ/DHR/GLGF; Rubredoxin-type Fe(Cys)4 protein 	NA	GO:0046872|metal ion binding||GO:0009055|electron carrier activity	NA
Ptp.7434.1.A1_s_at	A	A1TS	POPTR_0003s11080	POPTR_0003s11080 (11)	scaffold_3:11943844-11944261(+) (11)	NA	Q05085	Nitrate transporter 1.1	AT1G12110.1	nitrate transporter 1.1 	LOC_Os08g05910.1	"peptide transporter PTR2, putative, expressed"	Medtr5g012420.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.7439.1.S1_at	A	A1TS	POPTR_0012s04010	POPTR_0012s04010 (11)	scaffold_12:3238167-3238203(+) (11)	NA	Q8RXG3	Mitogen-activated protein kinase kinase 5	AT1G73500.1	MAP kinase kinase 9 	LOC_Os03g12390.1	"STE_MEK_ste7_MAP2K.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g080600.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7440.1.S1_at	A	A1TS	POPTR_0009s11280	POPTR_0009s11280 (9)	scaffold_9:9434845-9435382(+) (9)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT5G42650.1	allene oxide synthase 	LOC_Os03g55800.1	"cytochrome P450, putative, expressed"	Medtr4g093070.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7441.1.S1_at	A	A1TS	POPTR_0001s42800	POPTR_0001s42800 (11)	scaffold_1:42825414-42825656(-) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7442.1.S1_at	A	A1TS	POPTR_0001s47020	POPTR_0001s47020 (11)	scaffold_1:47349559-47349758(+) (11)	NA	P36181	Heat shock cognate protein 80	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
Ptp.7443.1.S1_at	A	A1TS	POPTR_0001s13060	POPTR_0001s13060 (9)	scaffold_1:10143610-10144132(+) (9)	NA	NA	NA	AT2G33550.1	Homeodomain-like superfamily protein 	LOC_Os02g31160.1	"transcription factor, putative"	Medtr7g020740.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7444.1.S1_s_at	A	A1TS	POPTR_0002s03340	POPTR_0002s03340 (11)	scaffold_2:2059883-2060703(-) (11)	POPTR_0005s25270 (6)	Q40517	Mitogen-activated protein kinase homolog NTF3	AT1G10210.2	mitogen-activated protein kinase 1 	LOC_Os06g48590.2	"CGMC_MAPKCMGC_2_SLT2y_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g134400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7446.1.S1_s_at	A	A2TS	POPTR_0012s10740	POPTR_0012s10740 (11)//POPTR_0012s10750 (9)	scaffold_12:11437987-11438386(-) (11)//scaffold_12:11444818-11445217(-) (9)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g61740.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr6g025640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.7449.1.S1_s_at	A	A1TS	POPTR_0010s01450	POPTR_0010s01450 (11)	scaffold_10:1584221-1585940(-) (11)	NA	Q86I22	Fumarylacetoacetate hydrolase domain-containing protein 1 homolog	AT4G15940.1	Fumarylacetoacetate (FAA) hydrolase family 	LOC_Os03g61330.2	"fumarylacetoacetase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.745.1.A1_at	A	A1TS	POPTR_0001s40980	POPTR_0001s40980 (9)	scaffold_1:40555119-40555253(+) (9)	NA	B9N1F9	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1	AT5G53850.2	haloacid dehalogenase-like hydrolase family protein 	LOC_Os11g29370.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0046872|metal ion binding	NA
Ptp.7451.1.A1_s_at	A	A1TS	POPTR_0002s00760	POPTR_0002s00760 (11)	scaffold_2:348911-349405(+) (11)	POPTR_0005s27680 (6)	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os02g13560.4	"transporter family protein, putative, expressed"	Medtr3g159920.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.7453.1.S1_at	A	A1TS	POPTR_0018s12210	POPTR_0018s12210 (10)	scaffold_18:12757101-12757628(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g122650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7454.1.S1_at	A	A1TS	POPTR_0006s21980	POPTR_0006s21980 (11)	scaffold_6:20999786-21000211(+) (11)	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7454.1.S1_s_at	A	A1TS	POPTR_0006s21980	POPTR_0006s21980 (11)	scaffold_6:20999999-21000237(+) (11)	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7456.1.S1_s_at	A	A1TS	POPTR_0012s14960	POPTR_0012s14960 (11)	scaffold_12:14650024-14650176(-) (11)	NA	Q39732	"Glycine cleavage system H protein, mitochondrial"	AT2G35120.1	Single hybrid motif superfamily protein 	LOC_Os02g07410.1	"glycine cleavage system H protein, putative, expressed"	Medtr4g114460.1	Glycine cleavage H-protein 	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
Ptp.7459.1.A1_at	A	A1TS	POPTR_0016s12490	POPTR_0016s12490 (10)	scaffold_16:11943110-11943445(-) (10)	NA	P48620	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.746.1.A1_at	A	A1TS	POPTR_0004s17580	POPTR_0004s17580 (11)	scaffold_4:17722618-17723153(+) (11)	NA	P45434	Translocon-associated protein subunit alpha	AT2G16595.1	"Translocon-associated protein (TRAP), alpha subunit "	LOC_Os06g50154.1	"translocon-associated protein subunit alpha precursor, putative, expressed"	Medtr3g163280.1	"Translocon-associated protein subunit alpha precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7462.1.S1_s_at	A	A1TS	POPTR_0003s07950	POPTR_0003s07950 (11)	scaffold_3:9446399-9446660(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7466.1.S1_at	A	A1TS	POPTR_0002s25200	POPTR_0002s25200 (11)	scaffold_2:22365146-22366575(+) (11)	NA	NA	NA	AT3G07440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48530.1); Has 37 Blast hits to 37 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os02g27740.1	expressed protein	Medtr8g011920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7467.1.S1_a_at	A	A1TS	POPTR_0006s12080	POPTR_0006s12080 (11)	scaffold_6:9228496-9229172(-) (11)	NA	Q3EBL9	Vacuolar protein-sorting-associated protein 37 homolog 2	AT2G36680.1	Modifier of rudimentary (Mod(r)) protein 	LOC_Os03g08770.1	"modifier of rudimentary protein, expressed"	Medtr7g124470.1	"Modifier of rudimentary, Modr "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7468.1.S1_at	A	A1TS	POPTR_0006s29520	POPTR_0006s29520 (11)	scaffold_6:26868884-26869215(+) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7468.1.S1_s_at	A	A1TS	POPTR_0006s29520	POPTR_0006s29520 (11)	scaffold_6:26868969-26869314(+) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7469.1.S1_at	A	A1TS	POPTR_0017s00260	POPTR_0017s00260 (10)	scaffold_17:52499-54050(+) (10)	POPTR_0017s00280 (7)	Q39172	Probable NADP-dependent oxidoreductase P1	AT5G16970.1	alkenal reductase 	LOC_Os12g12580.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.747.1.S1_at	A	A1TS	POPTR_0006s08000	POPTR_0006s08000 (9)	scaffold_6:5848074-5848573(+) (9)	NA	Q6NLD5	Ethylene-responsive transcription factor ERF015	AT4G31060.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr2g050010.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.7472.1.S1_at	A	A1TS	POPTR_0009s10390	POPTR_0009s10390 (10)	scaffold_9:8924970-8925424(+) (10)	NA	Q5XJ36	Protein DJ-1	AT4G34020.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os05g44330.5	"DJ-1 family protein, putative, expressed"	Medtr4g129930.1	ThiJ/PfpI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7474.2.S1_at	A	A1MS	POPTR_0001s47420	POPTR_0001s47420 (9)	scaffold_1:47628142-47628600(+) (9)	NA	O75629	Protein CREG1	AT2G04690.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os06g13100.1	"CREG1 precursor, putative, expressed"	Medtr7g029710.1	FMN-binding split barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7476.1.A1_at	A	A1TS	POPTR_0005s26420	POPTR_0005s26420 (9)	scaffold_5:24456771-24457298(+) (9)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G20110.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g50840.1	"zinc finger family protein, putative, expressed"	Medtr3g156570.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7476.1.A1_s_at	A	A2TS	POPTR_0002s02040	POPTR_0002s02040 (11)//POPTR_0005s26420 (11)	scaffold_2:1091557-1091735(-) (11)//scaffold_5:24457305-24457480(+) (10)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G20110.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g50840.1	"zinc finger family protein, putative, expressed"	Medtr3g156570.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7478.1.S1_at	A	A1TS	POPTR_0006s23640	POPTR_0006s23640 (11)	scaffold_6:22355607-22356026(+) (11)	NA	NA	NA	AT5G21940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g35630.1	"MTD1, putative, expressed"	Medtr1g019780.1	"MTD1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7478.2.S1_s_at	A	A1TS	POPTR_0006s23640	POPTR_0006s23640 (11)	scaffold_6:22356145-22356542(+) (11)	NA	NA	NA	AT5G21940.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g35630.1	"MTD1, putative, expressed"	Medtr1g019780.1	"MTD1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.748.1.S1_s_at	A	A1TS	POPTR_0008s19770	POPTR_0008s19770 (9)	scaffold_8:13639298-13639430(+) (9)	NA	NA	NA	AT1G70180.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g39090.1	"SAM domain containing protein, putative, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7480.1.S1_s_at	A	A1TS	POPTR_0007s04180	POPTR_0007s04180 (11)	scaffold_7:2519873-2520344(+) (11)	NA	NA	NA	AT5G44860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os08g01590.2	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7484.1.S1_s_at	A	A1TS	POPTR_0014s08380	POPTR_0014s08380 (11)	scaffold_14:6243992-6245193(+) (11)	NA	Q4ADV7	Protein RIC1 homolog	AT5G28350.2	"Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor "	LOC_Os02g54500.1	"WD40-like, putative, expressed"	Medtr7g087880.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7485.1.S1_at	A	A1TA	POPTR_0013s04140	POPTR_0013s04140 (9)	scaffold_13:2762397-2762872(-) (9)	NA	Q9ZTP3	Protein EIN4	AT3G04580.2	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os04g08740.2	"ethylene receptor, putative, expressed"	Medtr1g093360.1	"Tripartite hybrid signal transduction histidine kinase, BarA type; Bacteriophytochrome "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.7487.1.S1_at	A	A1TS	POPTR_0006s20900	POPTR_0006s20900 (10)	scaffold_6:19946096-19946663(+) (10)	NA	NA	NA	AT3G58050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41960.1); Has 13384 Blast hits to 8116 proteins in 546 species: Archae - 41; Bacteria - 766; Metazoa - 5596; Fungi - 1431; Plants - 589; Viruses - 46; Other Eukaryotes - 4915 (source: NCBI BLink). 	LOC_Os10g01610.1	expressed protein	Medtr7g112300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7489.1.S1_at	A	A1TS	POPTR_0003s14190	POPTR_0003s14190 (10)	scaffold_3:14316639-14317569(+) (10)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7493.1.S1_s_at	A	A1TS	POPTR_0003s12620	POPTR_0003s12620 (11)	scaffold_3:13137595-13137634(+) (11)	NA	O48646	"Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial"	AT4G11600.1	glutathione peroxidase 6 	LOC_Os04g46960.2	"glutathione peroxidase domain containing protein, expressed"	Medtr4g149540.3	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
Ptp.7493.1.S1_x_at	A	A1TS	POPTR_0003s12620	POPTR_0003s12620 (11)	scaffold_3:13136670-13137674(+) (11)	NA	O48646	"Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial"	AT4G11600.1	glutathione peroxidase 6 	LOC_Os04g46960.2	"glutathione peroxidase domain containing protein, expressed"	Medtr4g149540.3	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
Ptp.7495.1.S1_at	A	A1TS	POPTR_0009s11180	POPTR_0009s11180 (9)	scaffold_9:9380664-9381022(+) (9)	NA	NA	NA	AT4G31970.1	"cytochrome P450, family 82, subfamily C, polypeptide 2 "	NA	NA	Medtr6g009150.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.75.2.S1_at	A	A1MS	POPTR_0014s09650	POPTR_0014s09650 (10)	scaffold_14:7203323-7203849(-) (10)	NA	O42901	Uncharacterized protein C119.09c	AT1G01230.1	ORMDL family protein 	LOC_Os04g47970.1	"ORM1, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
Ptp.750.1.S1_s_at	A	A1TS	POPTR_0010s15830	POPTR_0010s15830 (11)	scaffold_10:14941765-14941804(+) (11)	NA	NA	NA	AT1G47970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; Has 93717 Blast hits to 40765 proteins in 1891 species: Archae - 1046; Bacteria - 16276; Metazoa - 26677; Fungi - 16127; Plants - 6028; Viruses - 1519; Other Eukaryotes - 26044 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7500.1.S1_at	A	A1TS	POPTR_0006s26740	POPTR_0006s26740 (11)	scaffold_6:24856027-24856637(-) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT3G22780.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os12g41230.3	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr1g013510.1	"Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7501.1.S1_s_at	A	A1TS	POPTR_0002s24090	POPTR_0002s24090 (11)	scaffold_2:21534843-21535320(-) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07380.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7504.1.S1_at	A	A1TS	POPTR_0010s24250	POPTR_0010s24250 (9)	scaffold_10:20561150-20561459(+) (9)	NA	NA	NA	AT5G22510.1	alkaline/neutral invertase 	LOC_Os02g32730.1	"neutral/alkaline invertase, putative, expressed"	Medtr4g141220.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7506.1.S1_s_at	A	A1TS	POPTR_0001s12640	POPTR_0001s12640 (11)	scaffold_1:9786040-9786485(-) (11)	NA	Q8LNZ5	Probable xyloglucan endotransglucosylase/hydrolase protein B	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099560.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.7507.1.S1_at	A	A1TS	POPTR_0005s14120	POPTR_0005s14120 (10)	scaffold_5:11195451-11195915(+) (10)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G37180.1	Homeodomain-like superfamily protein 	LOC_Os03g55590.1	"MYB family transcription factor, putative, expressed"	Medtr4g129010.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7509.2.S1_a_at	A	A1TS	POPTR_0014s11700	POPTR_0014s11700 (11)	scaffold_14:8674795-8675344(-) (11)	NA	NA	NA	AT1G02610.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g19800.1	"zinc finger, C3HC4 type, putative, expressed"	Medtr1g106880.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7509.3.S1_a_at	A	A1TS	POPTR_0014s11700	POPTR_0014s11700 (11)	scaffold_14:8672414-8674761(-) (11)	NA	NA	NA	AT1G02610.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g19800.1	"zinc finger, C3HC4 type, putative, expressed"	Medtr1g106880.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.751.2.S1_at	A	A1TS	POPTR_0002s02040	POPTR_0002s02040 (11)	scaffold_2:1095843-1096224(-) (11)	NA	Q8IZQ1	WD repeat and FYVE domain-containing protein 3	AT1G20110.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os06g50840.1	"zinc finger family protein, putative, expressed"	Medtr3g156570.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7510.1.S1_at	A	A1TS	POPTR_0008s01540	POPTR_0008s01540 (11)	scaffold_8:768705-768741(+) (11)	NA	NA	NA	AT3G10650.1	BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). 	LOC_Os03g57430.1	expressed protein	Medtr1g112090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7510.1.S1_s_at	A	A1TS	POPTR_0008s01540	POPTR_0008s01540 (9)	scaffold_8:768255-768656(+) (9)	NA	NA	NA	AT3G10650.1	BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). 	LOC_Os03g57430.1	expressed protein	Medtr1g112090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7511.2.S1_a_at	A	A1TS	POPTR_0017s03000	POPTR_0017s03000 (11)	scaffold_17:2175789-2176283(+) (11)	NA	Q6NLC8	Uncharacterized protein At1g66480	AT1G66480.1	plastid movement impaired 2 	LOC_Os08g33210.1	expressed protein	Medtr5g087100.1	"Uncharacterized protein At1g66480, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7517.1.A1_at	A	A1TS	POPTR_0001s35830	POPTR_0001s35830 (11)	scaffold_1:34190089-34191031(+) (11)	NA	Q04836	"31 kDa ribonucleoprotein, chloroplastic"	AT4G24770.1	31-kDa RNA binding protein 	LOC_Os09g39180.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g076830.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7521.1.S1_at	A	A1TS	POPTR_0005s09740	POPTR_0005s09740 (9)	scaffold_5:6839266-6839822(+) (9)	NA	Q8RXF1	Probable splicing factor 3A subunit 1	AT1G14650.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein 	LOC_Os02g14780.2	"splicing factor 3 subunit 1, putative, expressed"	Medtr4g156190.1	SWAP/Surp; Ubiquitin 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.7523.1.A1_a_at	A	A1TS	POPTR_0018s05010	POPTR_0018s05010 (10)	scaffold_18:4432167-4432431(-) (10)	NA	Q8UVD9	Far upstream element-binding protein 2	AT2G25970.1	KH domain-containing protein 	LOC_Os02g13130.1	"KH domain-containing protein, putative, expressed"	Medtr1g020830.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.7525.1.S1_at	A	A1TS	POPTR_0006s04790	POPTR_0006s04790 (11)	scaffold_6:3311730-3313386(-) (11)	NA	Q84M24	ABC transporter A family member 1	AT2G41700.1	ATP-binding cassette A1 	LOC_Os06g38950.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g112400.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.7526.1.S1_at	A	A1TS	POPTR_0002s10080	POPTR_0002s10080 (11)	scaffold_2:7246113-7246476(-) (11)	NA	Q940J1	Homeobox-leucine zipper protein ATHB-16	AT4G40060.1	homeobox protein 16 	LOC_Os08g37580.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g110250.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.7527.1.S1_at	A	A1TS	POPTR_0007s11790	POPTR_0007s11790 (10)	scaffold_7:12173203-12173246(-) (10)	NA	Q39088	Dof zinc finger protein DOF3.4	AT3G50410.1	OBF binding protein 1 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	AC235757_43.1	"Zinc finger, Dof-type AC235757.1 157398-155752 E EGN_Mt090430 200"	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.7527.1.S1_s_at	A	A1TS	POPTR_0007s11790	POPTR_0007s11790 (10)	scaffold_7:12172679-12173177(-) (10)	NA	Q39088	Dof zinc finger protein DOF3.4	AT3G50410.1	OBF binding protein 1 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	AC235757_43.1	"Zinc finger, Dof-type AC235757.1 157398-155752 E EGN_Mt090430 200"	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.7528.1.S1_s_at	A	A1TS	POPTR_0009s12880	POPTR_0009s12880 (11)	scaffold_9:10423677-10424110(+) (11)	NA	P33083	Auxin-induced protein 6B	AT1G75590.1	SAUR-like auxin-responsive protein family  	LOC_Os04g56680.1	"OsSAUR22 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g097600.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7530.1.S1_x_at	A	A1TS	POPTR_0001s42980	POPTR_0001s42980 (11)	scaffold_1:43046467-43048270(+) (11)	NA	Q40519	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.7533.1.S1_at	A	A1TS	POPTR_0006s11500	POPTR_0006s11500 (11)	scaffold_6:8715796-8716205(+) (11)	NA	Q2Z2E9	Protein SCARECROW	AT5G41920.1	GRAS family transcription factor 	LOC_Os11g03110.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g081070.1	Flagellar basal body rod protein; GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7534.1.S1_at	A	A2MS	POPTR_0003s01980	POPTR_0003s01980 (11)//POPTR_0027s00240 (11)	scaffold_27:45514-45554(-) (11)//scaffold_3:1878704-1878744(+) (11)	POPTR_0003s02000 (8)//POPTR_0003s02140 (8)	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7534.1.S1_s_at	A	A3TS	POPTR_0003s02000	POPTR_0003s02000 (11)//POPTR_0027s00370 (11)//POPTR_0003s02140 (9)	scaffold_27:164305-173370(-) (11)//scaffold_27:247120-253950(-) (10)//scaffold_3:1897986-1898262(+) (11)//scaffold_3:2136027-2136287(+) (11)//scaffold_3:2255916-2256038(+) (9)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7535.1.S1_at	A	A1TS	POPTR_0003s08890	POPTR_0003s08890 (11)	scaffold_3:10212232-10212887(+) (11)	NA	NA	NA	AT1G32540.3	lsd one like 1 	LOC_Os08g06280.3	"LSD1 zinc finger domain containing protein, expressed"	Medtr8g102780.1	"Zinc finger, LSD1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7536.1.A1_s_at	A	A1TS	POPTR_0015s13170	POPTR_0015s13170 (11)	scaffold_15:13234916-13235885(+) (11)	NA	P93788	Remorin	AT5G23750.2	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7537.1.S1_at	A	A1TS	POPTR_0005s17740	POPTR_0005s17740 (11)	scaffold_5:15443992-15445145(-) (11)	NA	Q96451	14-3-3-like protein B (Fragment)	AT5G65430.1	general regulatory factor 8 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g149020.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.7537.1.S1_s_at	A	A1TS	POPTR_0005s17740	POPTR_0005s17740 (11)	scaffold_5:15443656-15443745(-) (11)	NA	Q96451	14-3-3-like protein B (Fragment)	AT5G65430.1	general regulatory factor 8 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g149020.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.7537.1.S1_x_at	A	A1TS	POPTR_0005s17740	POPTR_0005s17740 (11)	scaffold_5:15443593-15445145(-) (11)	NA	Q96451	14-3-3-like protein B (Fragment)	AT5G65430.1	general regulatory factor 8 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g149020.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.7538.1.S1_at	A	A1TS	POPTR_0007s00280	POPTR_0007s00280 (10)	scaffold_7:74390-74796(+) (10)	NA	Q9M1Y3	F-box/ankyrin repeat protein SKIP35	AT3G59910.1	Ankyrin repeat family protein 	LOC_Os11g14180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.754.1.S1_a_at	A	A1TS	POPTR_0008s08940	POPTR_0008s08940 (11)	scaffold_8:5553033-5553077(+) (11)	NA	Q6P4K8	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	AT1G26550.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g24540.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g090170.1	PpiC-type peptidyl-prolyl cis-trans isomerase 	NA	GO:0016853|isomerase activity	NA
Ptp.7540.1.S1_at	A	A1TS	POPTR_0011s00730	POPTR_0011s00730 (11)	scaffold_11:370254-370715(+) (11)	NA	NA	NA	AT4G22320.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55210.1). 	LOC_Os08g25080.1	expressed protein	Medtr2g029560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7543.2.S1_at	A	A1TS	POPTR_0016s09310	POPTR_0016s09310 (11)	scaffold_16:7321720-7321844(+) (11)	NA	NA	NA	AT5G03345.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g37880.1	expressed protein	Medtr7g123870.1	"AAA ATPase VAT, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7543.2.S1_s_at	A	A1TS	POPTR_0016s09310	POPTR_0016s09310 (11)	scaffold_16:7321746-7321982(+) (11)	NA	NA	NA	AT5G03345.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g37880.1	expressed protein	Medtr7g123870.1	"AAA ATPase VAT, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7544.1.S1_at	A	A1TS	POPTR_0001s09350	POPTR_0001s09350 (11)	scaffold_1:7141074-7141271(-) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT4G11570.2	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os09g39560.1	"genetic modifier, putative, expressed"	Medtr4g149420.1	Histidine acid phosphatase; Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.7545.1.S1_at	A	A1TS	POPTR_0008s16510	POPTR_0008s16510 (10)	scaffold_8:11086236-11087005(+) (10)	NA	NA	NA	AT1G04340.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7546.1.S1_s_at	A	A1TS	POPTR_0005s07160	POPTR_0005s07160 (11)	scaffold_5:4816873-4817469(+) (11)	NA	Q9STN5	"Uncharacterized protein At4g08330, chloroplastic"	AT4G08330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g61680.1	expressed protein	Medtr3g100830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7547.1.S1_at	A	A1TS	POPTR_0012s01730	POPTR_0012s01730 (11)	scaffold_12:1306153-1307171(-) (11)	POPTR_0015s00210 (6)	Q94BN2	Spermine synthase	AT5G53120.5	spermidine synthase 3 	LOC_Os02g15550.2	"spermidine synthase, putative, expressed"	Medtr3g124370.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.7548.1.S1_at	A	A1TS	POPTR_0003s05190	POPTR_0003s05190 (11)	scaffold_3:6416387-6416922(+) (11)	NA	Q8LEM8	60S ribosomal protein L37-3	AT1G52300.1	Zinc-binding ribosomal protein family protein 	LOC_Os02g56990.1	"ribosomal protein L37, putative, expressed"	Medtr4g009180.1	Ribosomal protein L37e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7549.1.S1_at	A	A1MS	POPTR_0003s15630	POPTR_0003s15630 (10)	scaffold_3:15374439-15375203(-) (10)	POPTR_0001s12450 (6)	O96623	Actin-related protein 2/3 complex subunit 2	AT1G30825.1	"Arp2/3 complex, 34 kD subunit p34-Arc "	LOC_Os01g46580.1	"actin-related protein 2/3 complex subunit 2, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
Ptp.7550.1.S1_s_at	A	A1TS	POPTR_0014s07510	POPTR_0014s07510 (11)	scaffold_14:5646453-5647253(-) (11)	NA	P29620	Cyclin-dependent kinase D-1	AT1G73690.1	cyclin-dependent kinase D1;1 	LOC_Os05g32600.1	"cyclin-dependent kinase D-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7551.1.S1_at	A	A1TS	POPTR_0005s10980	POPTR_0005s10980 (11)	scaffold_5:7889249-7890046(+) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G66060.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr5g022950.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7552.1.S1_s_at	A	A1TS	POPTR_0011s07540	POPTR_0011s07540 (11)	scaffold_11:8379053-8379527(+) (11)	NA	NA	NA	AT2G34070.1	TRICHOME BIREFRINGENCE-LIKE 37 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr2g019150.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7553.1.S1_a_at	A	A1TS	POPTR_0005s25100	POPTR_0005s25100 (11)	scaffold_5:23437312-23437791(-) (11)	NA	Q43814	"Ornithine carbamoyltransferase, chloroplastic"	AT1G75330.1	ornithine carbamoyltransferase 	LOC_Os02g47590.1	"ornithine carbamoyltransferase, putative, expressed"	Medtr5g101000.1	Aspartate carbamoyltransferase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016743|carboxyl- or carbamoyltransferase activity	NA
Ptp.7553.1.S1_s_at	A	A1TS	POPTR_0005s25100	POPTR_0005s25100 (11)	scaffold_5:23437156-23437276(-) (11)	NA	Q43814	"Ornithine carbamoyltransferase, chloroplastic"	AT1G75330.1	ornithine carbamoyltransferase 	LOC_Os02g47590.1	"ornithine carbamoyltransferase, putative, expressed"	Medtr5g101000.1	Aspartate carbamoyltransferase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016743|carboxyl- or carbamoyltransferase activity	NA
Ptp.7554.2.S1_s_at	A	A1TS	POPTR_0001s22320	POPTR_0001s22320 (9)	scaffold_1:20940326-20941829(+) (10)	POPTR_0009s02200 (8)	Q9SJF0	Serine/threonine-protein phosphatase BSL2	AT1G08420.1	BRI1 suppressor 1 (BSU1)-like 2 	LOC_Os12g42310.1	"serine/threonine-protein phosphatase BSL2, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.7555.1.S1_s_at	A	A1TS	POPTR_0010s18490	POPTR_0010s18490 (11)	scaffold_10:16720447-16720953(+) (11)	NA	Q84W55	"Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3"	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7556.1.S1_at	A	A1TS	POPTR_0001s47010	POPTR_0001s47010 (11)	scaffold_1:47344375-47346195(-) (11)	NA	Q7ZWM6	Obg-like ATPase 1	AT1G30580.1	GTP binding 	LOC_Os08g09940.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.7557.1.S1_s_at	A	A1TS	POPTR_0006s20030	POPTR_0006s20030 (11)	scaffold_6:19069414-19069829(+) (11)	NA	O65554	CBL-interacting serine/threonine-protein kinase 6	AT4G30960.1	SOS3-interacting protein 3 	LOC_Os01g10890.1	"CAMK_KIN1/SNF1/Nim1_like.8 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g145620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7558.1.A1_at	A	A1TS	POPTR_0001s05690	POPTR_0001s05690 (10)	scaffold_1:4382737-4382897(+) (10)	NA	P25083	"ADP,ATP carrier protein, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7559.1.S1_s_at	A	A1TS	POPTR_0003s05710	POPTR_0003s05710 (10)	scaffold_3:7098155-7098414(+) (10)	NA	Q03369	U1 small nuclear ribonucleoprotein C	AT4G03120.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os02g16640.1	"proline-rich protein HaeIII subfamily 1 precursor, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
Ptp.7559.2.S1_a_at	A	A1TS	POPTR_0003s05710	POPTR_0003s05710 (11)	scaffold_3:7096592-7097117(+) (11)	NA	Q03369	U1 small nuclear ribonucleoprotein C	AT4G03120.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os02g16640.1	"proline-rich protein HaeIII subfamily 1 precursor, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
Ptp.7560.1.S1_at	A	A1TS	POPTR_0010s14470	POPTR_0010s14470 (10)	scaffold_10:14069078-14069282(-) (10)	NA	NA	NA	AT3G25545.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11970.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7561.1.S1_s_at	A	A1TS	POPTR_0016s06310	POPTR_0016s06310 (11)	scaffold_16:4239918-4240066(+) (11)	NA	Q9ZUT9	40S ribosomal protein S5-1	AT2G37270.2	ribosomal protein 5B 	LOC_Os11g29190.2	"40S ribosomal protein S5, putative, expressed"	AC235488_12.1	Ribosomal protein S7 AC235488.1 52998-48408 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7562.1.A1_at	A	A1TS	POPTR_0018s10570	POPTR_0018s10570 (10)	scaffold_18:11466543-11468080(-) (10)	NA	P34125	Diacylglycerol kinase A	AT2G18730.1	diacylglycerol kinase 3 	LOC_Os02g54650.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.7563.1.S1_at	A	A1TS	POPTR_0006s17720	POPTR_0006s17720 (11)	scaffold_6:15860916-15861499(-) (11)	NA	Q54Q39	Protein phosphatase 1 regulatory subunit pprA	AT5G19680.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g13640.1	"protein phosphatase 1 regulatory subunit SDS22, putative, expressed"	Medtr4g159610.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.7565.1.S1_at	A	A1TS	POPTR_0018s04990	POPTR_0018s04990 (10)	scaffold_18:4421120-4423306(-) (10)	NA	NA	NA	AT4G26210.2	Mitochondrial ATP synthase subunit G protein 	LOC_Os05g45740.2	"mitochondrial ATP synthase g subunit family protein, putative, expressed"	Medtr4g160610.1	Mitochondrial ATP synthase g subunit 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0000276|""mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)"""
Ptp.7566.1.S1_at	A	A1TS	POPTR_0016s08760	POPTR_0016s08760 (11)	scaffold_16:6548165-6548593(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7568.1.S1_s_at	A	A1TS	POPTR_0019s08640	POPTR_0019s08640 (11)	scaffold_19:10175095-10175516(+) (11)	NA	NA	NA	AT5G05240.1	Uncharacterised conserved protein (UCP030365) 	LOC_Os02g03940.1	expressed protein	Medtr1g008510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7569.1.S1_at	A	A1TS	POPTR_0006s19790	POPTR_0006s19790 (10)	scaffold_6:18807990-18809301(-) (10)	NA	NA	NA	AT4G30900.2	DNAse I-like superfamily protein 	LOC_Os05g19974.1	"endonuclease/exonuclease/phosphatase family protein, putative, expressed"	Medtr8g145310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7570.1.S1_at	A	A1TS	POPTR_0010s12190	POPTR_0010s12190 (11)	scaffold_10:12255965-12256852(+) (11)	NA	Q9SXS2	Probable sulfate transporter 3.3	AT1G23090.1	sulfate transporter 91 	LOC_Os04g55800.1	"sulfate transporter, putative, expressed"	AC234703_12.1	Sulphate anion transporter AC234703.1 74838-69482 E EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.7571.1.S1_s_at	A	A1TS	POPTR_0003s14380	POPTR_0003s14380 (11)	scaffold_3:14462278-14462618(+) (11)	NA	NA	NA	AT4G10810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7572.1.S1_s_at	A	A1TS	POPTR_0001s04690	POPTR_0001s04690 (9)	scaffold_1:3631071-3631361(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7574.1.S1_at	A	A1TS	POPTR_0001s45420	POPTR_0001s45420 (9)	scaffold_1:45907790-45909713(-) (11)	NA	Q9MAP8	"Probable beta-1,3-galactosyltransferase 6"	AT1G32930.1	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
Ptp.7575.1.S1_s_at	A	A2TS	POPTR_0007s07960	POPTR_0799s00200 (11)//POPTR_0007s07960 (11)	scaffold_7:6444386-6444674(-) (11)//scaffold_799:351-640(-) (11)	NA	P14656	Glutamine synthetase cytosolic isozyme 1-1	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.7576.1.S1_at	A	A1TS	POPTR_0009s13940	POPTR_0009s13940 (9)	scaffold_9:11007980-11009001(-) (9)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7580.1.S1_at	A	A1TS	POPTR_0004s21060	POPTR_0004s21060 (10)	scaffold_4:20357754-20358252(+) (10)	NA	NA	NA	AT3G11600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g37030.1	expressed protein	AC146630_13.1	hypothetical protein AC146630.25 80011-79050 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7581.1.A1_at	A	A1TS	POPTR_0006s29010	POPTR_0006s29010 (11)	scaffold_6:26509574-26509819(-) (11)	NA	NA	NA	AT4G31430.3	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g56140.3	expressed protein	Medtr3g133430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7582.1.A1_at	A	A1TS	POPTR_0009s15250	POPTR_0009s15250 (9)	scaffold_9:11836615-11836790(-) (9)	NA	Q8LPK4	AP-2 complex subunit alpha-2	AT5G22780.1	"Adaptor protein complex AP-2, alpha subunit "	LOC_Os03g02150.1	"adapitin protein, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.7583.1.S1_at	A	A1TS	POPTR_0004s03770	POPTR_0004s03770 (9)	scaffold_4:2633225-2633742(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr2g014460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7584.1.A1_s_at	A	A1TS	POPTR_0016s01630	POPTR_0016s01630 (11)	scaffold_16:742383-742699(+) (11)	NA	Q9SV07	Acyl-CoA--sterol O-acyltransferase 1	AT3G51970.1	acyl-CoA sterol acyl transferase 1 	LOC_Os02g25700.1	"O-acyltransferase, putative"	Medtr3g076460.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7585.2.S1_s_at	A	A1TS	POPTR_0009s07410	POPTR_0009s07410 (10)	scaffold_9:6920507-6921587(+) (11)	NA	Q54UU1	Trafficking protein particle complex subunit 4	AT5G02280.1	SNARE-like superfamily protein 	LOC_Os07g27150.3	"trafficking protein particle complex subunit 4, putative, expressed"	Medtr4g158650.1	Sybindin-like protein 	GO:0006888|ER to Golgi vesicle-mediated transport	NA	GO:0005801|cis-Golgi network
Ptp.7589.1.A1_a_at	A	A1TS	POPTR_0003s08670	POPTR_0003s08670 (11)	scaffold_3:10069649-10069901(-) (11)	NA	Q42581	"Ribose-phosphate pyrophosphokinase 1, chloroplastic"	AT2G35390.2	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.759.1.S1_at	A	A1TS	POPTR_0017s11740	POPTR_0017s11740 (11)	scaffold_17:11502763-11503291(-) (11)	NA	P33629	Tubulin alpha chain	AT4G14960.2	Tubulin/FtsZ family protein 	LOC_Os11g14220.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.7598.1.S1_at	A	A1TS	POPTR_0005s26110	POPTR_0005s26110 (10)	scaffold_5:24213754-24214093(+) (10)	NA	NA	NA	AT1G19990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). 	LOC_Os03g14580.1	expressed protein	Medtr3g156440.1	"Contains a weak similarity to Rap8, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7599.1.S1_at	A	A1TS	POPTR_0001s16620	POPTR_0001s16620 (11)	scaffold_1:13404544-13405444(+) (11)	NA	NA	NA	AT3G14110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g32730.2	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr8g025640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7599.2.S1_a_at	A	A1TS	POPTR_0001s16620	POPTR_0001s16620 (11)	scaffold_1:13404374-13404528(+) (11)	NA	NA	NA	AT3G14110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g32730.2	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr8g025640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.76.1.S1_s_at	A	A3TS	POPTR_0002s10150	POPTR_0002s10150 (11)//POPTR_0002s10170 (11)//POPTR_1040s00200 (9)	scaffold_1040:1547-2058(+) (9)//scaffold_2:7291850-7292370(-) (11)//scaffold_2:7300870-7301389(-) (11)	NA	Q41001	Blue copper protein	AT1G72230.1	Cupredoxin superfamily protein 	LOC_Os06g11490.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr3g150210.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.760.1.A1_at	A	A1TS	POPTR_0006s00760	POPTR_0006s00760 (11)	scaffold_6:402518-403007(+) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT4G16360.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os05g41220.1	"SNF1-related protein kinase regulatory subunit beta-1, putative, expressed"	Medtr5g095330.1	"SNF1-related protein kinase regulatory subunit beta-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7601.1.S1_s_at	A	A1TS	POPTR_0015s00580	POPTR_0015s00580 (9)	scaffold_15:352361-352527(-) (9)	NA	A7QEU4	Peroxidase 5	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os03g02920.1	"peroxidase precursor, putative, expressed"	Medtr3g122440.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.7602.1.A1_at	A	A1TS	POPTR_0002s09700	POPTR_0002s09700 (11)	scaffold_2:6949841-6950258(-) (11)	NA	Q9C9R3	TRM112-like protein At1g78190	AT1G78190.1	Trm112p-like protein 	LOC_Os07g43020.1	"TRM112, putative, expressed"	Medtr2g034350.1	Protein of unknown function DUF343 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7603.1.S1_at	A	A1TS	POPTR_0001s00580	POPTR_0001s00580 (9)	scaffold_1:471913-472259(-) (9)	NA	O64769	Potassium transporter 11	AT2G35060.1	K+ uptake permease 11 	LOC_Os04g52390.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.7607.1.S1_s_at	A	A1TS	POPTR_0001s13240	POPTR_0001s13240 (10)	scaffold_1:10337976-10339966(-) (10)	NA	Q93ZM9	Protein TIFY 9	AT5G13220.1	jasmonate-zim-domain protein 10 	LOC_Os04g32480.1	"zinc-finger protein, putative, expressed"	Medtr5g013680.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.761.1.A1_at	A	A1TS	POPTR_0007s06840	POPTR_0007s06840 (10)	scaffold_7:5170540-5170955(-) (10)	NA	Q55GD2	Leucine-rich repeat-containing protein DDB_G0268328	AT4G39420.1	unknown protein; Has 46 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g08750.2	expressed protein	Medtr4g141130.1	Cyclic nucleotide-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7620.1.S1_at	A	A1TS	POPTR_0016s06970	POPTR_0016s06970 (9)	scaffold_16:4776598-4777608(+) (9)	NA	NA	NA	AT3G05680.1	embryo defective 2016 	LOC_Os03g35340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7622.1.S1_at	A	A1TS	POPTR_0012s01230	POPTR_0012s01230 (10)	scaffold_12:860363-860851(+) (10)	NA	Q9SUQ3	Probable inactive receptor kinase At4g23740	AT4G23740.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g12390.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g124770.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.7624.1.S1_s_at	A	A1TS	POPTR_0014s13720	POPTR_0014s13720 (11)	scaffold_14:10051169-10051625(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7626.1.S1_at	A	A1TS	POPTR_0005s12090	POPTR_0005s12090 (10)	scaffold_5:8877225-8877841(-) (10)	NA	NA	NA	AT5G49410.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G73940.1); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g27140.1	expressed protein	Medtr5g104930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7627.1.S1_at	A	A1TS	POPTR_0005s22000	POPTR_0005s22000 (10)	scaffold_5:21027516-21027964(-) (10)	NA	NA	NA	AT1G71730.1	unknown protein; Has 52 Blast hits to 52 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os05g08920.1	"late embryogenesis abundant protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7628.1.S1_at	A	A1TS	POPTR_0008s12820	POPTR_0008s12820 (10)	scaffold_8:8313920-8314767(-) (10)	NA	NA	NA	AT1G70950.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr3g137120.2	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7629.1.S1_at	A	A1MS	POPTR_0002s17560	POPTR_0002s17560 (11)	scaffold_2:13322323-13323416(-) (11)	NA	P92964	Arginine/serine-rich-splicing factor RSP31	AT3G61860.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g02870.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g029490.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.763.1.S1_s_at	A	A1TS	POPTR_0017s12460	POPTR_0017s12460 (11)	scaffold_17:12628137-12628672(-) (11)	NA	Q39131	Lamin-like protein	AT5G15350.1	early nodulin-like protein 17 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr6g013830.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.7630.1.S1_at	A	A1TS	POPTR_0008s20380	POPTR_0008s20380 (9)	scaffold_8:14165674-14165814(+) (9)	NA	Q9M8J3	Protein FAR1-RELATED SEQUENCE 7	AT3G06250.1	FAR1-related sequence 7 	LOC_Os03g50900.1	"transposon protein, putative, unclassified, expressed"	Medtr2g026200.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.7631.1.S1_at	A	A1TS	POPTR_0004s14500	POPTR_0004s14500 (9)	scaffold_4:15066138-15068897(+) (9)	NA	Q810L3	E3 ubiquitin-protein ligase CHFR	AT1G47570.1	RING/U-box superfamily protein 	LOC_Os11g07450.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g144600.1	"Zinc finger, RING-type; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7633.1.S1_at	A	A1TS	POPTR_0014s05160	POPTR_0014s05160 (10)	scaffold_14:3937786-3938068(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7635.1.S1_at	A	A1TS	POPTR_0014s12180	POPTR_0014s12180 (9)	scaffold_14:9012930-9013392(+) (9)	NA	Q9SRX4	Probable pectinesterase/pectinesterase inhibitor 7	AT1G02810.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g20980.1	"pectinesterase, putative, expressed"	Medtr1g108220.1	Pectinesterase; Plant invertase/pectin methylesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.7637.1.A1_at	A	A1TS	POPTR_0008s19930	POPTR_0008s19930 (11)	scaffold_8:13768813-13769969(-) (11)	NA	NA	NA	AT1G07040.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27030.1); Has 540 Blast hits to 538 proteins in 187 species: Archae - 0; Bacteria - 333; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). 	LOC_Os10g32680.1	expressed protein	Medtr5g039510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7638.1.S1_s_at	A	A1TS	POPTR_0014s17070	POPTR_0014s17070 (11)	scaffold_14:13248548-13248934(-) (11)	NA	P27522	"Chlorophyll a-b binding protein 8, chloroplastic"	AT1G61520.3	photosystem I light harvesting complex gene 3 	LOC_Os02g10390.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g106420.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.7639.1.S1_at	A	A1TS	POPTR_0010s06390	POPTR_0010s06390 (9)	scaffold_10:7749224-7749710(+) (9)//scaffold_10:7781678-7782164(+) (9)	POPTR_0010s06380 (6)	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g43040.2	"transferase family protein, putative, expressed"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.7643.1.S1_at	A	A1MS	POPTR_0005s21660	POPTR_0005s21660 (9)	scaffold_5:20765538-20766035(+) (9)	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.2	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7644.1.S1_at	A	A1TS	POPTR_0001s29560	POPTR_0001s29560 (11)	scaffold_1:28200596-28200742(+) (11)	NA	P33154	Pathogenesis-related protein 1	AT2G14610.1	pathogenesis-related gene 1 	LOC_Os10g11500.1	"SCP-like extracellular protein, expressed"	Medtr2g010660.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7644.1.S1_s_at	A	A1TS	POPTR_0001s29560	POPTR_0001s29560 (11)	scaffold_1:28200301-28200759(+) (11)	NA	P33154	Pathogenesis-related protein 1	AT2G14610.1	pathogenesis-related gene 1 	LOC_Os10g11500.1	"SCP-like extracellular protein, expressed"	Medtr2g010660.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7646.1.A1_a_at	A	A1TS	POPTR_0001s06470	POPTR_0001s06470 (11)	scaffold_1:4995519-4996248(+) (11)	NA	Q6LL68	Beta-galactosidase	AT3G54440.1	glycoside hydrolase family 2 protein 	LOC_Os01g72340.1	"beta-galactosidase, putative, expressed"	Medtr8g042760.1	"Glycoside hydrolase, family 42, domain 5, loop region; Glycoside hydrolase family 2, sugar binding; Galactose mutarotase-like; ; "	GO:0005975|carbohydrate metabolic process	GO:0004565|beta-galactosidase activity	GO:0009341|beta-galactosidase complex
Ptp.7648.1.S1_s_at	A	A1TS	POPTR_0013s11590	POPTR_0013s11590 (11)	scaffold_13:12240263-12240840(-) (11)	NA	Q9H6Y7	E3 ubiquitin-protein ligase RNF167	AT1G71980.1	Protease-associated (PA) RING/U-box zinc finger family protein 	LOC_Os03g07130.4	"RING finger protein 13, putative, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7652.1.S1_s_at	A	A1TS	POPTR_0006s11250	POPTR_0006s11250 (11)	scaffold_6:8544196-8544836(+) (11)	NA	Q96EX2	RING finger and transmembrane domain-containing protein 2	AT5G01960.1	RING/U-box superfamily protein 	LOC_Os01g07390.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr7g080680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7653.1.S1_a_at	A	A2TS	POPTR_0009s04410	POPTR_0187s00240 (11)//POPTR_0009s04410 (11)	scaffold_187:79324-79358(+) (11)//scaffold_9:4793883-4793917(-) (11)	NA	P05478	18.5 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7653.1.S1_s_at	A	A2TS	POPTR_0009s04410	POPTR_0187s00240 (11)//POPTR_0009s04410 (11)	scaffold_187:78917-78960(+) (11)//scaffold_9:4794281-4794324(-) (11)	NA	P05478	18.5 kDa class I heat shock protein	AT1G07400.1	HSP20-like chaperones superfamily protein 	LOC_Os03g16040.1	"hsp20/alpha crystallin family protein, putative"	Medtr4g124600.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7654.1.S1_at	A	A1TS	POPTR_0005s18320	POPTR_0005s18320 (11)	scaffold_5:16473223-16474383(+) (11)	NA	Q9FH99	F-box protein At5g67140	AT5G67140.1	F-box/RNI-like superfamily protein 	LOC_Os06g07000.1	"OsFBL28 - F-box domain and LRR containing protein, expressed"	Medtr5g016800.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7657.1.S1_at	A	A1TS	POPTR_0015s04710	POPTR_0015s04710 (9)	scaffold_15:4922090-4928997(+) (9)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g21940.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7658.1.S1_s_at	A	A1TS	POPTR_0009s15190	POPTR_0009s15190 (11)	scaffold_9:11778973-11779444(-) (11)	NA	Q9FNI7	Glucomannan 4-beta-mannosyltransferase 2	AT5G22740.1	cellulose synthase-like A02 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr4g073490.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7659.1.S1_s_at	A	A1TS	POPTR_0011s12230	POPTR_0011s12230 (11)	scaffold_11:14989143-14991795(+) (11)	NA	Q5ZLN0	Leucine-rich repeat-containing protein 40	AT3G15410.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g58030.1	"leucine-rich repeat-containing protein 40, putative, expressed"	Medtr7g117050.1	Protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.766.1.S1_s_at	A	A1TS	POPTR_0018s01710	POPTR_0018s01710 (11)	scaffold_18:1568684-1569066(+) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.7661.1.S1_at	A	A1TS	POPTR_0009s01900	POPTR_0009s01900 (10)	scaffold_9:2372518-2373607(+) (10)	NA	Q6MD85	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	AT5G60600.3	4-hydroxy-3-methylbut-2-enyl diphosphate synthase 	LOC_Os02g39160.1	"hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed"	Medtr2g110470.1	IspG protein; Dihydropteroate synthase-like 	GO:0055114|oxidation reduction||GO:0016114|terpenoid biosynthetic process	GO:0046429|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	NA
Ptp.7663.1.S1_at	A	A1TS	POPTR_0012s04460	POPTR_0012s04460 (10)	scaffold_12:3675344-3675851(+) (10)	NA	Q8L7A4	Probable ADP-ribosylation factor GTPase-activating protein AGD11	AT3G17980.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g22130.1	expressed protein	Medtr4g154840.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7664.1.S1_at	A	A1MS	POPTR_0017s11280	POPTR_0017s11280 (9)	scaffold_17:11020075-11020289(+) (9)	NA	A7Z050	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1	AT5G15070.1	Phosphoglycerate mutase-like family protein 	LOC_Os03g48300.1	"histidine acid phosphatase, putative, expressed"	Medtr7g008460.1	Histidine acid phosphatase; Ferritin/ribonucleotide reductase-like 	NA	GO:0003993|acid phosphatase activity	NA
Ptp.7668.1.S1_at	A	A1TS	POPTR_0016s09190	POPTR_0016s09190 (11)	scaffold_16:7179691-7179948(-) (11)	NA	Q9ZUU4	"Ribonucleoprotein At2g37220, chloroplastic"	AT2G37220.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g43810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr1g076830.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.7672.1.S1_at	A	A1TS	POPTR_0004s16590	POPTR_0004s16590 (9)	scaffold_4:17018467-17019115(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr3g162790.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
Ptp.7673.1.S1_at	A	A1TS	POPTR_0012s05600	POPTR_0012s05600 (11)	scaffold_12:5263682-5264178(+) (11)	NA	P29110	Oleosin Bn-III	AT3G18570.1	Oleosin family protein 	LOC_Os05g50110.1	"oleosin, putative, expressed"	Medtr3g133000.1	Oleosin 	NA	NA	GO:0043231|intracellular membrane-bounded organelle||GO:0016021|integral to membrane||GO:0012511|monolayer-surrounded lipid storage body
Ptp.7674.1.S1_at	A	A1TS	POPTR_0015s04120	POPTR_0015s04120 (9)	scaffold_15:4142881-4145190(+) (9)	NA	Q9LMT1	Probable protein phosphatase 2C 8	AT1G18030.1	Protein phosphatase 2C family protein 	LOC_Os09g14540.1	"protein phosphatase 2C, putative, expressed"	Medtr6g086250.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7677.1.S1_at	A	A1TS	POPTR_0006s28280	POPTR_0006s28280 (10)	scaffold_6:26018482-26019220(+) (10)	NA	Q3E6P4	F-box protein At2g02240	AT2G02240.1	F-box family protein 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr1g092880.1	"Cyclin-like F-box; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7679.1.S1_a_at	A	A1TS	POPTR_0007s07690	POPTR_0007s07690 (11)	scaffold_7:6063544-6063698(-) (11)	NA	Q9LEY1	Serine carboxypeptidase-like 35	AT5G08260.1	serine carboxypeptidase-like 35 	LOC_Os02g42310.1	"OsSCP8 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g100960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.7679.2.S1_s_at	A	A1TS	POPTR_0007s07690	POPTR_0007s07690 (11)	scaffold_7:6061623-6063220(-) (11)	NA	Q9LEY1	Serine carboxypeptidase-like 35	AT5G08260.1	serine carboxypeptidase-like 35 	LOC_Os02g42310.1	"OsSCP8 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g100960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.768.1.S1_s_at	A	A1TS	POPTR_0003s05230	POPTR_0003s05230 (11)	scaffold_3:6479595-6479733(+) (11)	NA	O24461	Ras-related protein Rab7	AT1G52280.1	RAB GTPase homolog G3D 	LOC_Os01g12730.1	"ras-related protein, putative, expressed"	Medtr4g009230.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.7681.1.A1_a_at	A	A1TS	POPTR_0014s15560	POPTR_0014s15560 (11)	scaffold_14:11586047-11586312(-) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G15410.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7682.1.A1_at	A	A1TS	POPTR_0003s15430	POPTR_0003s15430 (11)	scaffold_3:15205161-15205390(-) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g58630.1	"pentatricopeptide repeat, putative, expressed"	Medtr7g134520.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7687.1.S1_at	A	A1MS	POPTR_0006s19010	POPTR_0006s19010 (10)	scaffold_6:17849465-17849574(-) (10)	NA	NA	NA	AT4G28025.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g39730.2	expressed protein	Medtr8g127870.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7688.1.S1_s_at	A	A1TS	POPTR_0019s04710	POPTR_0019s04710 (11)	scaffold_19:4924440-4924734(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G18270.2	Arabidopsis NAC domain containing protein 87 	LOC_Os03g21030.1	"no apical meristem protein, putative, expressed"	Medtr7g100140.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.7689.1.S1_s_at	A	A1TS	POPTR_0014s03650	POPTR_0014s03650 (11)	scaffold_14:2914098-2914176(+) (11)	NA	Q700D9	Putative Myb family transcription factor At1g14600	AT5G42630.1	Homeodomain-like superfamily protein 	LOC_Os03g55760.1	"MYB family transcription factor, putative, expressed"	Medtr1g025490.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7690.1.S1_at	A	A1MA	POPTR_0016s13090	POPTR_0016s13090 (9)	scaffold_16:12386185-12386525(-) (9)	NA	Q9LYS2	ABC transporter C family member 10	AT3G59140.1	multidrug resistance-associated protein 14 	LOC_Os06g06440.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr1g125730.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7691.1.A1_s_at	A	A1TS	POPTR_0012s13180	POPTR_0012s13180 (11)	scaffold_12:13447460-13447787(-) (11)	NA	Q04980	Low-temperature-induced 65 kDa protein	AT5G52300.2	CAP160 protein 	LOC_Os10g36180.1	expressed protein	AC235674_13.1	hypothetical protein AC235674.1 71786-63477 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7692.1.A1_at	A	A1TS	POPTR_0001s02040	POPTR_0001s02040 (11)	scaffold_1:1539012-1539518(+) (11)	NA	Q94KU5	"Plastid lipid-associated protein 3, chloroplastic"	AT2G35490.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os10g42500.1	"PAP fibrillin family domain containing protein, expressed"	Medtr5g029500.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
Ptp.7694.1.S1_s_at	A	A1TS	POPTR_0003s06390	POPTR_0003s06390 (9)	scaffold_3:7873358-7873550(-) (9)	NA	NA	NA	AT1G54150.1	E3 Ubiquitin ligase family protein 	LOC_Os03g08000.1	expressed protein	Medtr8g025010.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7695.1.S1_s_at	A	A1TS	POPTR_0009s11510	POPTR_0009s11510 (11)	scaffold_580:1537-2147(-) (11)//scaffold_9:9548161-9548771(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os01g06520.1	"verticillium wilt disease resistance protein, putative, expressed"	Medtr5g093760.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.7696.2.S1_at	A	A1TS	POPTR_1677s00200	POPTR_1677s00200 (11)	scaffold_1677:1751-1941(+) (11)	NA	Q9FLN0	GDSL esterase/lipase 1	AT5G40990.1	GDSL lipase 1 	LOC_Os06g50950.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr8g026270.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.7697.1.S1_at	A	A1TS	POPTR_0010s10650	POPTR_0010s10650 (10)	scaffold_10:11119091-11119607(+) (10)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT1G60060.1	Serine/threonine-protein kinase WNK (With No Lysine)-related 	LOC_Os02g50900.1	expressed protein	Medtr5g036020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7698.1.S1_at	A	A1TS	POPTR_0009s06070	POPTR_0009s06070 (11)	scaffold_9:5978363-5978880(-) (11)	NA	NA	NA	AT1G01550.2	Protein of unknown function (DUF793) 	NA	NA	Medtr3g030380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.77.1.S1_at	A	A1TS	POPTR_0002s19340	POPTR_0002s19340 (11)	scaffold_2:15296385-15296861(-) (11)	NA	O22899	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G62310.1	RNA helicase family protein 	LOC_Os03g19960.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr1g106350.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.770.1.A1_s_at	A	A1TS	POPTR_0010s23620	POPTR_0010s23620 (11)	scaffold_10:20157879-20158561(-) (11)	NA	P36862	GTP-binding protein yptV3	AT5G03530.1	RAB GTPase homolog C2A 	LOC_Os03g05280.1	"ras-related protein, putative, expressed"	Medtr3g143270.1	"Ras GTPase; Sigma-54 factor, interaction region; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.7700.1.S1_at	A	A1TS	POPTR_0008s20990	POPTR_0008s20990 (11)	scaffold_8:15030118-15031178(-) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G18650.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os12g35320.1	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr2g025150.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.7705.1.S1_at	A	A1TS	POPTR_0016s08190	POPTR_0016s08190 (9)	scaffold_16:6035908-6036484(-) (9)	NA	Q92539	Phosphatidate phosphatase LPIN2	AT3G09560.3	Lipin family protein 	LOC_Os05g38710.1	"lipin, N-terminal conserved region family protein, expressed"	Medtr7g120540.1	"Lipin, N-terminal conserved region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7706.1.S1_at	A	A1TS	POPTR_0014s02800	POPTR_0014s02800 (9)	scaffold_14:2330805-2331161(+) (9)	NA	Q6NY52	THO complex subunit 5 homolog	AT5G42920.2	"THO complex,  subunit 5 "	LOC_Os02g52820.1	"cold-induced protein, putative, expressed"	Medtr3g147710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7706.2.A1_at	A	A1TS	POPTR_0014s02800	POPTR_0014s02800 (10)	scaffold_14:2329881-2330706(+) (10)	NA	Q6NY52	THO complex subunit 5 homolog	AT5G42920.2	"THO complex,  subunit 5 "	LOC_Os02g52820.1	"cold-induced protein, putative, expressed"	Medtr3g147710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7707.1.S1_s_at	A	A1TS	POPTR_0004s00470	POPTR_0004s00470 (11)	scaffold_4:165913-166033(-) (11)	NA	NA	NA	AT4G03965.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr8g147420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7710.1.S1_s_at	A	A1TS	POPTR_0005s11640	POPTR_0005s11640 (11)	scaffold_5:8434782-8434868(-) (11)	NA	Q9Y4A5	Transformation/transcription domain-associated protein	AT2G17930.1	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain 	LOC_Os07g45070.1	"FAT domain-containing protein, putative, expressed"	Medtr5g021910.1	"PIK-related kinase, FATC "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
Ptp.7711.2.A1_a_at	A	A1TS	POPTR_0009s04920	POPTR_0009s04920 (10)	scaffold_9:5158978-5159252(+) (10)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT2G29730.1	UDP-glucosyl transferase 71D1 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7712.2.A1_a_at	A	A1TS	POPTR_0008s16570	POPTR_0008s16570 (11)	scaffold_8:11120540-11123303(-) (11)	NA	Q9LSW8	"Electron transfer flavoprotein subunit beta, mitochondrial"	AT5G43430.1	electron transfer flavoprotein beta 	LOC_Os04g10400.1	"electron transfer flavoprotein subunit beta, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7713.1.A1_at	A	A1TS	POPTR_0001s10050	POPTR_0001s10050 (9)	scaffold_1:7773536-7774328(-) (9)	NA	Q9P7J5	Uncharacterized AAA domain-containing protein C24B10.10c	AT1G64110.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g12660.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g009960.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.7715.1.S1_a_at	A	A1TS	POPTR_0012s00640	POPTR_0012s00640 (10)	scaffold_12:318665-318859(+) (10)//scaffold_276:21939-22146(-) (11)	NA	Q9XGN1	Protein TRANSPARENT TESTA GLABRA 1	AT5G24520.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g45810.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g122570.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7718.1.S1_at	A	A1TS	POPTR_0005s04670	POPTR_0005s04670 (10)	scaffold_5:3143694-3143812(+) (10)	NA	P56287	Probable translation initiation factor eIF-2B subunit epsilon	AT2G34970.1	Trimeric LpxA-like enzyme 	LOC_Os02g56740.1	"translation initiation factor eIF-2B subunit epsilon, putative, expressed"	Medtr6g025610.1	eIF4-gamma/eIF5/eIF2-epsilon 	NA	GO:0016740|transferase activity	NA
Ptp.7718.1.S1_s_at	A	A1TS	POPTR_0005s04670	POPTR_0005s04670 (10)	scaffold_5:3141903-3143702(+) (10)	NA	P56287	Probable translation initiation factor eIF-2B subunit epsilon	AT2G34970.1	Trimeric LpxA-like enzyme 	LOC_Os02g56740.1	"translation initiation factor eIF-2B subunit epsilon, putative, expressed"	Medtr6g025610.1	eIF4-gamma/eIF5/eIF2-epsilon 	NA	GO:0016740|transferase activity	NA
Ptp.7719.1.A1_at	A	A1TS	POPTR_0007s00400	POPTR_0007s00400 (9)	scaffold_7:143205-143571(+) (9)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT2G31820.1	Ankyrin repeat family protein 	LOC_Os09g34280.4	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.772.1.A1_s_at	A	A1TS	POPTR_0007s13600	POPTR_0007s13600 (11)	scaffold_7:13630713-13631066(+) (11)	NA	NA	NA	AT3G51050.1	FG-GAP repeat-containing protein 	LOC_Os02g01070.1	"FG-GAP repeat-containing protein, putative, expressed"	Medtr5g021050.1	FG-GAP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7732.1.S1_at	A	A1TS	POPTR_0001s33550	POPTR_0001s33550 (11)	scaffold_1:31758806-31759208(+) (11)	NA	Q9LBG2	Levodione reductase	AT3G01980.4	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g63290.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g008910.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7733.1.S1_s_at	A	A1TS	POPTR_0019s09910	POPTR_0019s09910 (11)	scaffold_19:11534343-11534562(+) (11)	NA	Q9S7A3	Molybdopterin synthase sulfur carrier subunit	AT4G10100.3	"co-factor for nitrate, reductase and xanthine dehydrogenase 7 "	LOC_Os02g35200.1	"VP15, putative, expressed"	Medtr3g009960.1	ThiamineS; 2Fe-2S Ferredoxin-like fold 	GO:0006790|sulfur metabolic process	NA	NA
Ptp.7734.1.S1_s_at	A	A1TS	POPTR_0009s05400	POPTR_0009s05400 (11)	scaffold_9:5516670-5516870(+) (11)	NA	O24133	"Magnesium-chelatase subunit chlD, chloroplastic"	AT1G08520.1	ALBINA 1 	LOC_Os03g59640.1	"magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed"	Medtr5g009080.1	"von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7735.1.S1_at	A	A1TS	POPTR_0008s04260	POPTR_0008s04260 (9)	scaffold_8:2386116-2386312(+) (9)	NA	Q9FT54	Transcription factor GTE6	AT2G34900.1	Transcription factor GTE6 	LOC_Os06g04640.1	"bromodomain domain containing protein, expressed"	Medtr8g084150.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7736.1.S1_at	A	A1TS	POPTR_0006s08180	POPTR_0006s08180 (11)	scaffold_6:5955629-5955741(-) (11)//scaffold_871:8972-9084(+) (11)	NA	NA	NA	AT5G24710.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g46510.1	"peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed"	Medtr7g134460.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7737.1.S1_s_at	A	A1TS	POPTR_0004s01330	POPTR_0004s01330 (11)	scaffold_4:722417-722528(-) (11)	NA	Q9LFF1	"Pentatricopeptide repeat-containing protein At3g53700, chloroplastic"	AT3G53700.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g40020.1	"PPR repeat containing protein, expressed"	AC233662_58.1	Pentatricopeptide repeat AC233662.1 266570-264088 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7738.1.S1_at	A	A1TS	POPTR_0011s16010	POPTR_0011s16010 (10)	scaffold_11:17987406-17987610(+) (10)	NA	NA	NA	AT1G07090.1	Protein of unknown function (DUF640) 	LOC_Os02g56610.1	"DUF640 domain containing protein, putative, expressed"	Medtr5g080780.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7739.1.S1_at	A	A1TS	POPTR_0001s40730	POPTR_0001s40730 (9)	scaffold_1:40309283-40310294(-) (9)	NA	Q8LFP1	PRA1 family protein H	AT4G27540.1	prenylated RAB acceptor 1.H 	LOC_Os09g04880.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.774.1.A1_at	A	A1TS	POPTR_0005s12320	POPTR_0005s12320 (10)	scaffold_5:9097341-9097762(+) (10)	NA	Q9ZPV8	Phosphopantetheine adenylyltransferase	AT2G18250.1	4-phosphopantetheine adenylyltransferase 	LOC_Os02g04120.1	"cytidylyltransferase domain containing protein, expressed"	Medtr5g020570.1	Dephospho-CoA kinase; Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.7740.1.S1_at	A	A1TS	POPTR_0010s18100	POPTR_0010s18100 (10)	scaffold_10:16460050-16460500(+) (10)	NA	B4RRY8	Ribosomal RNA large subunit methyltransferase I	AT1G54310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g07740.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.7740.2.A1_a_at	A	A1TS	POPTR_0010s18100	POPTR_0010s18100 (11)	scaffold_10:16459949-16460940(+) (11)	NA	B4RRY8	Ribosomal RNA large subunit methyltransferase I	AT1G54310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g07740.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.7740.2.A1_at	A	A1TS	POPTR_0010s18100	POPTR_0010s18100 (10)	scaffold_10:16459578-16461091(+) (10)	NA	B4RRY8	Ribosomal RNA large subunit methyltransferase I	AT1G54310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g07740.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.7745.1.S1_s_at	A	A1MS	POPTR_0014s12970	POPTR_0014s12970 (11)	scaffold_14:9551027-9551309(-) (11)	NA	O82261	"Protease Do-like 2, chloroplastic"	AT2G47940.1	DEGP protease 2 	LOC_Os05g05480.1	"OsDegp6 - Putative Deg protease homologue, expressed"	Medtr8g125310.1	"Peptidase S1 and S6, chymotrypsin/Hap "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.7746.1.S1_at	A	A1TS	POPTR_0002s19190	POPTR_0002s19190 (11)	scaffold_2:15118238-15119976(-) (11)	NA	NA	NA	AT4G01897.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF952 (InterPro:IPR009297); Has 763 Blast hits to 763 proteins in 180 species: Archae - 0; Bacteria - 351; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 383 (source: NCBI BLink). 	LOC_Os03g36630.1	expressed protein	Medtr7g133460.1	Protein of unknown function DUF952 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7748.1.S1_at	A	A1TS	POPTR_0016s07800	POPTR_0016s07800 (9)	scaffold_16:5616879-5617168(+) (9)	NA	NA	NA	AT3G52570.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g64262.2	"hydrolase, alpha/beta fold family, putative, expressed"	Medtr5g008770.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7749.1.S1_at	A	A1TS	POPTR_0006s09820	POPTR_0006s09820 (11)	scaffold_6:7208733-7209227(-) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.775.1.S1_x_at	A	A1TS	POPTR_0009s13890	POPTR_0009s13890 (11)	scaffold_9:10978473-10979160(-) (11)	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.7754.1.S1_a_at	A	A1TS	POPTR_0009s11910	POPTR_0009s11910 (9)	scaffold_9:9798516-9798556(-) (9)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
Ptp.7754.1.S1_at	A	A1TS	POPTR_0009s11910	POPTR_0009s11910 (9)	scaffold_9:9798496-9798944(-) (9)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
Ptp.7758.1.S1_at	A	A1TS	POPTR_0005s21380	POPTR_0005s21380 (11)	scaffold_5:20483076-20483561(-) (11)	NA	P62311	U6 snRNA-associated Sm-like protein LSm3	AT1G76860.1	Small nuclear ribonucleoprotein family protein 	LOC_Os01g64690.1	"LSM domain containing protein, expressed"	Medtr4g115290.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7759.1.S1_at	A	A1TS	POPTR_0016s01530	POPTR_0016s01530 (11)	scaffold_16:697654-698758(+) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os02g48730.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr2g029800.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
Ptp.7764.1.S1_s_at	A	A1TS	POPTR_0010s16600	POPTR_0010s16600 (11)	scaffold_10:15513030-15513261(-) (11)	NA	NA	NA	AT1G10380.1	Putative membrane lipoprotein 	LOC_Os06g25950.1	expressed protein	Medtr5g038340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7766.1.S1_at	A	A1TS	POPTR_0006s16340	POPTR_0006s16340 (11)	scaffold_6:14261885-14262271(-) (11)	NA	Q95QD7	Protein lin-54	AT4G29000.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os01g55580.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	AC225507_24.1	"Tesmin/TSO1-like, CXC AC225507.11 107125-103243 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7769.1.S1_at	A	A1MS	POPTR_0003s12670	POPTR_0003s12670 (9)	scaffold_3:13182788-13183203(+) (9)	NA	P41230	Lysine-specific demethylase 5C	AT1G63490.1	transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	Medtr5g010400.1	"transcription factor jumonji, related "	NA	NA	GO:0005634|nucleus
Ptp.777.1.A1_at	A	A1TS	POPTR_0017s08060	POPTR_0017s08060 (11)	scaffold_17:6465535-6465962(+) (11)	NA	O04866	"Acetylornithine aminotransferase, mitochondrial"	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.7770.1.S1_a_at	A	A1TS	POPTR_0004s23770	POPTR_0004s23770 (11)	scaffold_4:22376415-22376605(-) (11)	NA	Q8L7G0	Auxin response factor 1	AT1G59750.4	auxin response factor 1 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr2g005100.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7770.2.S1_at	A	A1TS	POPTR_0004s23770	POPTR_0004s23770 (11)	scaffold_4:22375820-22376922(-) (11)	NA	Q8L7G0	Auxin response factor 1	AT1G59750.4	auxin response factor 1 	LOC_Os02g35140.1	"auxin response factor 7, putative, expressed"	Medtr2g005100.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.7771.1.S1_at	A	A1TS	POPTR_0010s17470	POPTR_0010s17470 (11)	scaffold_10:16062917-16063655(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G69560.1	myb domain protein 105 	LOC_Os08g33800.1	"MYB family transcription factor, putative"	Medtr4g111830.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7773.1.S1_s_at	A	A1TS	POPTR_0001s15210	POPTR_0001s15210 (10)	scaffold_1:12054619-12054740(-) (10)	NA	A4GYV4	Protein ycf2	ATCG01280.1	"Chloroplast Ycf2;ATPase, AAA type, core "	LOC_Os10g40140.1	"MSP domain containing protein, expressed"	Medtr5g013430.1	Major sperm protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7774.1.A1_at	A	A1TS	POPTR_0006s12040	POPTR_0006s12040 (9)	scaffold_6:9207743-9208268(-) (9)	POPTR_0016s10950 (7)	Q9DE27	RuvB-like 2	AT5G67630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g08770.1	"ruvB-like 2, putative, expressed"	Medtr3g080810.1	"AAA ATPase; TIP49, C-terminal "	NA	GO:0003678|DNA helicase activity||GO:0005524|ATP binding	NA
Ptp.7775.1.A1_at	A	A1TS	POPTR_0015s14370	POPTR_0015s14370 (9)	scaffold_15:13999646-13999780(-) (9)	NA	Q9LUJ5	Probable rRNA-processing protein EBP2 homolog	AT3G22660.1	rRNA processing protein-related 	LOC_Os07g29320.1	"rRNA-processing protein EBP2, putative, expressed"	Medtr5g028430.1	Eukaryotic rRNA processing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7776.1.S1_at	A	A1TS	POPTR_0018s12080	POPTR_0018s12080 (9)	scaffold_18:12667394-12668206(-) (9)	NA	P55862	DNA replication licensing factor mcm5-A	AT2G07690.1	Minichromosome maintenance (MCM2/3/5) family protein 	LOC_Os02g55410.1	"MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed"	Medtr4g165910.1	"MCM; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
Ptp.7782.1.A1_s_at	A	A1TS	POPTR_0010s10570	POPTR_0010s10570 (11)	scaffold_10:11073955-11074388(+) (11)	NA	NA	NA	AT1G70230.1	TRICHOME BIREFRINGENCE-LIKE 27 	LOC_Os06g12870.1	"leaf senescence related protein, putative, expressed"	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7784.1.S1_at	A	A1TS	POPTR_0008s10520	POPTR_0008s10520 (10)	scaffold_8:6593603-6595778(-) (10)	NA	P0AAT8	Uncharacterized protein ybeB	AT1G67620.1	Lojap-related protein 	LOC_Os12g13824.2	expressed protein	Medtr3g103350.1	Iojap-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7785.1.A1_s_at	A	A1TS	POPTR_0005s25360	POPTR_0005s25360 (11)	scaffold_5:23633824-23635366(+) (11)	NA	Q9FMM0	Probable ubiquitin-conjugating enzyme E2 18	AT5G42990.1	ubiquitin-conjugating enzyme 18 	LOC_Os03g47770.1	"ubiquitin-conjugating enzyme E2 W, putative, expressed"	Medtr5g021210.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.7787.1.S1_s_at	A	A1TS	POPTR_0013s13210	POPTR_0013s13210 (11)	scaffold_13:13772098-13773334(+) (11)	NA	Q7Z9H9	Uncharacterized protein C1093.03	AT3G59770.1	sacI homology domain-containing protein / WW domain-containing protein 	LOC_Os01g25330.3	"SAC9, putative, expressed"	Medtr4g128320.1	"WW/Rsp5/WWP; Synaptojanin, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.7790.1.S1_at	A	A1TS	POPTR_0002s25890	POPTR_0002s25890 (11)	scaffold_2:22898751-22899021(-) (11)	NA	Q4KLU2	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7795.1.S1_at	A	A1MS	POPTR_0008s12840	POPTR_0008s12840 (11)	scaffold_8:8343819-8344125(-) (11)	NA	Q0JKX1	Homeobox-leucine zipper protein HOX3	AT2G01430.1	homeobox-leucine zipper protein 17 	LOC_Os01g45570.1	"homeobox associated leucine zipper, putative, expressed"	Medtr2g071640.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.78.2.A1_a_at	A	A2TS	POPTR_0004s13480	POPTR_0004s13480 (11)//POPTR_0017s11290 (11)	scaffold_17:11044124-11044489(-) (11)//scaffold_4:13635276-13635641(+) (11)	NA	Q32RS0	Pyruvate dehydrogenase E1 component subunit beta	AT2G34590.1	Transketolase family protein 	LOC_Os12g42230.1	"transketolase, putative, expressed"	Medtr3g115120.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.78.2.A1_at	A	A1TS	POPTR_0004s13480	POPTR_0004s13480 (11)	scaffold_4:13635341-13635795(+) (11)	NA	Q32RS0	Pyruvate dehydrogenase E1 component subunit beta	AT2G34590.1	Transketolase family protein 	LOC_Os12g42230.1	"transketolase, putative, expressed"	Medtr3g115120.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.78.3.A1_a_at	A	A1TS	POPTR_0017s11290	POPTR_0017s11290 (11)	scaffold_17:11043901-11044359(-) (11)	NA	Q32RS0	Pyruvate dehydrogenase E1 component subunit beta	AT2G34590.1	Transketolase family protein 	LOC_Os12g42230.1	"transketolase, putative, expressed"	Medtr3g115120.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.7803.1.S1_at	A	A1MA	POPTR_0001s33920	POPTR_0001s33920 (9)	scaffold_1:32084222-32084641(-) (9)	NA	P92942	Chloride channel protein CLC-b	AT3G27170.1	chloride channel B 	LOC_Os12g25200.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr6g025600.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
Ptp.7804.1.S1_at	A	A1TS	POPTR_0005s21300	POPTR_0005s21300 (10)	scaffold_5:20407173-20407219(-) (10)	NA	Q04088	Probable transcription factor PosF21	AT1G43700.1	VIRE2-interacting protein 1 	LOC_Os12g06520.1	"bZIP transcription factor domain containing protein, expressed"	Medtr5g083200.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.7805.1.A1_at	A	A1TS	POPTR_0004s12760	POPTR_0004s12760 (11)	scaffold_4:12002216-12002734(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os03g52310.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
Ptp.7806.1.S1_at	A	A1MS	POPTR_0005s06190	POPTR_0005s06190 (11)	scaffold_5:4067028-4067125(+) (11)	NA	Q9LIQ7	"Pentatricopeptide repeat-containing protein At3g24000, mitochondrial"	AT3G24000.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os11g10740.1	"tetratricopeptide-like helical, putative"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7809.1.S1_at	A	A1MS	POPTR_0001s39220	POPTR_0001s39220 (9)	scaffold_1:38430982-38431168(-) (9)	NA	Q9SYM4	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1"	AT1G78580.1	trehalose-6-phosphate synthase 	LOC_Os05g44210.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g136450.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.7811.1.A1_at	A	A1TS	POPTR_0005s09800	POPTR_0005s09800 (11)	scaffold_5:6860941-6861854(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G79570.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os07g25680.1	"protein kinase domain containing protein, expressed"	Medtr1g111680.1	Octicosapeptide/Phox/Bem1p; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7815.1.A1_at	A	A1TS	POPTR_0019s02260	POPTR_0019s02260 (11)	scaffold_19:2101551-2102015(-) (11)	NA	Q8T4E1	Putative GPI-anchor transamidase	AT1G08750.3	Peptidase C13 family 	LOC_Os02g12740.1	"GPI-anchor transamidase precursor, putative, expressed"	Medtr2g073970.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
Ptp.7816.1.S1_at	A	A2TA	POPTR_0010s22080	POPTR_0010s22080 (10)//POPTR_0010s22090 (10)	scaffold_10:19142994-19143095(+) (10)//scaffold_10:19149148-19149249(+) (10)	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.7817.1.A1_at	A	A1TS	POPTR_0003s14940	POPTR_0003s14940 (11)	scaffold_3:14858632-14858838(+) (11)	NA	Q4PC17	Multiple RNA-binding domain-containing protein 1	AT4G19610.1	nucleotide binding;nucleic acid binding;RNA binding 	LOC_Os04g52200.1	"RNA recognition motif containing protein, putative, expressed"	Medtr2g021990.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.7818.2.S1_a_at	A	A1TS	POPTR_0013s00370	POPTR_0013s00370 (11)	scaffold_13:149344-150766(+) (11)	POPTR_0005s00450 (7)	A2A6A1	G patch domain-containing protein 8	AT5G26610.3	D111/G-patch domain-containing protein 	LOC_Os04g02500.2	"G-patch domain containing protein, expressed"	Medtr7g134900.2	"D111/G-patch; Zinc finger, C2H2-type "	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.782.1.S1_at	A	A1TS	POPTR_0008s00710	POPTR_0008s00710 (9)	scaffold_8:327706-327908(+) (9)	NA	Q5QQ57	Xylosyltransferase 1	AT1G71070.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g56570.1	"xylosyltransferase, putative, expressed"	Medtr1g137280.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.782.1.S1_s_at	A	A1TS	POPTR_0001s42950	POPTR_0001s42950 (11)	scaffold_1:43031314-43031625(-) (11)	NA	C0LGH2	Probable LRR receptor-like serine/threonine-protein kinase At1g56130	AT1G16670.1	Protein kinase superfamily protein 	LOC_Os02g06930.2	"protein kinase, putative, expressed"	Medtr2g077070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7823.1.A1_at	A	A1TS	POPTR_0017s07580	POPTR_0017s07580 (11)	scaffold_17:5898305-5898788(-) (11)	NA	Q94B59	"Pentatricopeptide repeat-containing protein At5g09450, mitochondrial"	AT5G09450.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g37720.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7827.1.S1_at	A	A1MS	POPTR_0010s19760	POPTR_0010s19760 (9)	scaffold_10:17592930-17593453(+) (9)	NA	NA	NA	AT2G40070.1	BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g04880.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g093370.1	"En/Spm-like transposon protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7828.1.S1_at	A	A1MS	POPTR_0001s37250	POPTR_0001s37250 (9)	scaffold_1:36190253-36190686(-) (9)	NA	P0C896	"Pentatricopeptide repeat-containing protein At3g02650, mitochondrial"	AT3G02650.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g67210.1	"PPR repeat domain containing protein, putative, expressed"	Medtr5g095990.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7831.1.S1_at	A	A1MS	POPTR_0008s04140	POPTR_0008s04140 (11)	scaffold_8:2302055-2302532(-) (11)	NA	Q9SFB5	Serine carboxypeptidase-like 27	AT3G07990.1	serine carboxypeptidase-like 27 	LOC_Os01g61690.1	"OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.7832.1.S1_at	A	A1MS	POPTR_0019s15040	POPTR_0019s15040 (9)	scaffold_19:15665254-15665487(-) (9)	NA	Q6S4P4	Transcription factor RF2b	AT2G40620.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g21800.2	"bZIP transcription factor family protein, putative, expressed"	Medtr5g083200.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.7834.1.S1_at	A	A1TS	POPTR_0006s11980	POPTR_0006s11980 (10)	scaffold_6:9144992-9145609(-) (10)	NA	Q9ZSS6	"Threonine dehydratase biosynthetic, chloroplastic"	AT3G10050.1	L-O-methylthreonine resistant 1 	LOC_Os03g50510.1	"threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed"	Medtr1g073850.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0044283|small molecule biosynthetic process||GO:0009097|isoleucine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0004794|L-threonine ammonia-lyase activity	NA
Ptp.7834.1.S1_s_at	A	A1TS	POPTR_0006s11980	POPTR_0006s11980 (11)	scaffold_6:9145048-9145406(-) (11)	NA	Q9ZSS6	"Threonine dehydratase biosynthetic, chloroplastic"	AT3G10050.1	L-O-methylthreonine resistant 1 	LOC_Os03g50510.1	"threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed"	Medtr1g073850.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0044283|small molecule biosynthetic process||GO:0009097|isoleucine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0004794|L-threonine ammonia-lyase activity	NA
Ptp.7835.1.A1_at	A	A1TS	POPTR_0011s05120	POPTR_0011s05120 (11)	scaffold_11:5028827-5029209(-) (11)	NA	Q84JR3	"Pentatricopeptide repeat-containing protein At4g21705, mitochondrial"	AT4G21705.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7838.1.S1_s_at	A	A1TS	POPTR_0008s11480	POPTR_0008s11480 (11)	scaffold_8:7290575-7291009(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G25700.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g48330.1	"aspartyl protease family protein, putative, expressed"	Medtr5g098350.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7839.1.S1_at	A	A1TS	POPTR_0004s08240	POPTR_0004s08240 (10)	scaffold_4:6762987-6763329(+) (10)	NA	Q39263	Zinc finger protein 4	AT1G66140.1	zinc finger protein 4 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr3g087170.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.7841.1.A1_at	A	A1TS	POPTR_0013s07370	POPTR_0013s07370 (11)	scaffold_13:6149599-6150376(-) (11)	NA	NA	NA	AT1G09815.1	polymerase delta 4 	LOC_Os09g34850.3	"POLD4A - Putative DNA polymerase delta complex subunit, expressed"	AC235662_16.1	"DNA polymerase delta, subunit 4 AC235662.1 72274-71456 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	NA	GO:0005634|nucleus
Ptp.7842.1.A1_at	A	A1TS	POPTR_0015s03960	POPTR_0015s03960 (10)	scaffold_15:3857705-3858657(-) (10)	NA	NA	NA	AT3G18240.2	"Ribosomal protein S24/S35, mitochondrial "	LOC_Os08g40230.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7843.1.S1_s_at	A	A1TS	POPTR_0004s16030	POPTR_0004s16030 (11)	scaffold_4:16491265-16491339(-) (11)	NA	Q9SAA2	"ATP-dependent Clp protease proteolytic subunit 6, chloroplastic"	AT1G11750.1	CLP protease proteolytic subunit 6 	LOC_Os03g29810.1	"OsClp6 - Putative Clp protease homologue, expressed"	Medtr4g095340.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.7844.1.S1_s_at	A	A1TS	POPTR_0002s17630	POPTR_0002s17630 (11)	scaffold_2:13472854-13472933(+) (11)	NA	Q9LM76	U-box domain-containing protein 44	AT1G20780.1	senescence-associated E3 ubiquitin ligase 1 	LOC_Os01g72000.1	"armadillo repeat-containing protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.7846.1.S1_at	A	A1TS	POPTR_0004s07120	POPTR_0004s07120 (11)	scaffold_4:5899884-5900396(+) (11)	NA	Q84K34	E3 ubiquitin-protein ligase SINA-like 10	AT5G37930.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os06g20610.1	"seven in absentia protein family domain containing protein, expressed"	AC235662_15.1	TRAF-like AC235662.1 70113-67206 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7847.1.S1_s_at	A	A1TS	POPTR_0008s15560	POPTR_0008s15560 (11)	scaffold_8:10340192-10341017(+) (11)	NA	Q9LUJ3	Protein RDM1	AT3G22680.1	RNA-DIRECTED DNA METHYLATION 1 	LOC_Os06g42430.3	expressed protein	Medtr5g006750.1	Protein of unknown function DUF1950 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7848.1.A1_s_at	A	A1TS	POPTR_0005s05790	POPTR_0005s05790 (11)	scaffold_5:3792068-3792429(+) (11)	NA	P57722	Poly(rC)-binding protein 3	AT3G04610.1	RNA-binding KH domain-containing protein 	LOC_Os03g42900.1	"KH domain containing protein, putative, expressed"	Medtr8g129730.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.7851.1.S1_at	A	A1TS	POPTR_0013s10570	POPTR_0013s10570 (10)	scaffold_13:10912553-10912999(+) (10)	NA	NA	NA	AT1G14060.1	GCK domain-containing protein 	LOC_Os03g44520.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7853.1.S1_at	A	A1TS	POPTR_0009s02540	POPTR_0009s02540 (9)	scaffold_9:3312165-3312855(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7854.1.S1_s_at	A	A1TS	POPTR_0001s40210	POPTR_0001s40210 (11)	scaffold_1:39572244-39572528(-) (11)	NA	O82768	"Histidine biosynthesis bifunctional protein hisIE, chloroplastic"	AT1G31860.1	histidine biosynthesis bifunctional protein (HISIE) 	LOC_Os01g16940.1	"MazG nucleotide pyrophosphohydrolase domain containing protein, expressed"	NA	NA	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004635|phosphoribosyl-AMP cyclohydrolase activity||GO:0004636|phosphoribosyl-ATP diphosphatase activity	NA
Ptp.7855.1.S1_s_at	A	A1TS	POPTR_0006s26190	POPTR_0006s26190 (11)	scaffold_6:24465008-24465405(+) (11)	NA	Q9T0K5	Leucine-rich repeat extensin-like protein 3	AT4G13340.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g41120.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr4g158630.1	"leucine-rich repeat family protein, putative "	NA	GO:0005515|protein binding	NA
Ptp.7856.1.S1_at	A	A1TS	POPTR_0018s03390	POPTR_0018s03390 (9)	scaffold_18:2990676-2990933(-) (9)	POPTR_0006s28720 (6)	P84104	Serine/arginine-rich splicing factor 3	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.8	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.7858.1.S1_s_at	A	A1TS	POPTR_0010s19530	POPTR_0010s19530 (11)	scaffold_10:17419404-17421321(+) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g03640.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g094020.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.786.1.S1_at	A	A1TS	POPTR_0007s07710	POPTR_0007s07710 (11)	scaffold_7:6100658-6103036(-) (11)	NA	P54168	Uncharacterized protein ypgQ	AT1G17330.1	Metal-dependent phosphohydrolase 	LOC_Os10g34470.1	"HD domain containing protein 2, putative, expressed"	Medtr4g024680.1	"Metal-dependent phosphohydrolase, HD region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7860.1.A1_at	A	A1TS	POPTR_0001s31150	POPTR_0001s31150 (11)	scaffold_1:29488072-29488941(-) (11)	NA	Q58821	Uncharacterized protein MJ1426	AT4G36910.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os08g22149.1	"CBS domain containing membrane protein, putative, expressed"	Medtr5g016660.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7862.1.S1_at	A	A1TS	POPTR_0012s10300	POPTR_0012s10300 (10)	scaffold_12:11097578-11099475(-) (10)	NA	Q8RU27	"Alpha-1,4-glucan-protein synthase [UDP-forming] 2"	AT3G02230.1	reversibly glycosylated polypeptide 1 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
Ptp.7863.1.S1_at	A	A1TS	POPTR_0010s10850	POPTR_0010s10850 (11)	scaffold_10:11255316-11255818(+) (11)	NA	Q9ZUM0	Zinc finger CCCH domain-containing protein 17	AT2G02160.1	CCCH-type zinc finger family protein 	LOC_Os04g57600.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119790.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.7864.1.S1_at	A	A1TS	POPTR_0005s15150	POPTR_0005s15150 (9)	scaffold_5:11941818-11943872(+) (9)	NA	B6IPJ8	50S ribosomal protein L20	AT1G16740.1	Ribosomal protein L20 	LOC_Os05g45220.1	"50S ribosomal protein L20, putative, expressed"	Medtr5g094460.1	"Ribosomal protein L20, bacterial and organelle form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7865.1.S1_at	A	A1TS	POPTR_0014s01360	POPTR_0014s01360 (9)	scaffold_14:1338399-1338862(+) (9)	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	LOC_Os01g34780.2	"protein binding protein, putative, expressed"	Medtr4g101290.1	FF 	NA	GO:0005515|protein binding	NA
Ptp.7865.2.A1_at	A	A1TS	POPTR_0014s01370	POPTR_0014s01370 (10)	scaffold_14:1337982-1338471(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7866.2.S1_a_at	A	A1TS	POPTR_0008s02720	POPTR_0008s02720 (11)	scaffold_8:1380451-1380808(+) (11)	NA	A6QLT2	Myotubularin-related protein 2	AT3G10550.1	Myotubularin-like phosphatases II superfamily 	LOC_Os08g44260.1	"inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed"	Medtr1g116840.1	Myotubularin-related 	GO:0016311|dephosphorylation	GO:0016791|phosphatase activity	NA
Ptp.7867.1.S1_s_at	A	A1TS	POPTR_0018s04250	POPTR_0018s04250 (11)	scaffold_18:3589273-3590948(+) (11)	NA	Q8GWT4	Protein arginine N-methyltransferase 5	AT4G31120.1	SHK1 binding protein 1 	LOC_Os02g04660.1	"arginine N-methyltransferase 5, putative, expressed"	Medtr3g133650.1	Skb1 methyltransferase 	NA	GO:0008168|methyltransferase activity	GO:0005737|cytoplasm
Ptp.7870.1.A1_s_at	A	A1TS	POPTR_0010s18800	POPTR_0010s18800 (11)	scaffold_10:16934282-16934448(+) (11)	NA	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.7870.2.S1_at	A	A1TS	POPTR_0010s18800	POPTR_0010s18800 (9)	scaffold_10:16931192-16933394(+) (9)	NA	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.7870.2.S1_s_at	A	A1TS	POPTR_0010s18800	POPTR_0010s18800 (11)	scaffold_10:16932086-16933718(+) (11)	POPTR_0008s07680 (6)	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.7872.1.A1_at	A	A1TS	POPTR_0014s03570	POPTR_0014s03570 (10)	scaffold_14:2846679-2846911(-) (10)	NA	O04348	"Thylakoidal processing peptidase 1, chloroplastic"	AT2G30440.1	thylakoid processing peptide 	LOC_Os09g28000.1	"OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr3g148730.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7872.1.A1_s_at	A	A1TS	POPTR_0014s03570	POPTR_0014s03570 (11)	scaffold_14:2847035-2847147(-) (11)	NA	O04348	"Thylakoidal processing peptidase 1, chloroplastic"	AT2G30440.1	thylakoid processing peptide 	LOC_Os09g28000.1	"OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr3g148730.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7877.1.A1_at	A	A2TS	POPTR_0014s06970	POPTR_0014s06970 (11)//POPTR_0002s15270 (10)	scaffold_14:5248454-5248586(-) (11)//scaffold_2:11413853-11413922(-) (10)	NA	Q9LE59	"Alpha-1,4-galacturonosyltransferase 1"	AT3G61130.1	galacturonosyltransferase 1 	LOC_Os09g36190.1	"glycosyl transferase family 8, putative, expressed"	Medtr7g083410.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.7877.1.A1_s_at	A	A1TS	POPTR_0014s06970	POPTR_0014s06970 (11)	scaffold_14:5248109-5248454(-) (11)	NA	Q9LE59	"Alpha-1,4-galacturonosyltransferase 1"	AT3G61130.1	galacturonosyltransferase 1 	LOC_Os09g36190.1	"glycosyl transferase family 8, putative, expressed"	Medtr7g083410.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.7878.1.S1_s_at	A	A1TS	POPTR_0008s19860	POPTR_0008s19860 (11)	scaffold_8:13711467-13711678(+) (11)	NA	Q9D832	DnaJ homolog subfamily B member 4	AT1G10350.1	DNAJ heat shock family protein 	LOC_Os05g48810.1	"dnaJ domain containing protein, expressed"	AC235756_5.1	Heat shock protein DnaJ AC235756.1 49207-45302 F EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.7881.1.S1_at	A	A1TS	POPTR_0002s14890	POPTR_0002s14890 (9)	scaffold_2:11023698-11024312(+) (9)	NA	P51102	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.7882.1.S1_at	A	A1TS	POPTR_0019s13440	POPTR_0019s13440 (10)	scaffold_19:14361193-14361698(+) (10)	NA	Q9LR67	"Pentatricopeptide repeat-containing protein At1g03560, mitochondrial"	AT1G03560.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os07g30930.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr5g102690.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7883.1.S1_at	A	A1TS	POPTR_0015s11330	POPTR_0015s11330 (11)	scaffold_15:11920711-11922429(-) (11)	NA	Q9SW27	Membrane-anchored ubiquitin-fold protein 3	AT4G24990.1	Ubiquitin family protein 	LOC_Os04g32270.1	"membrane-anchored ubiquitin-fold protein, putative, expressed"	Medtr7g148240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7884.1.A1_at	A	A1TS	POPTR_0012s04250	POPTR_0012s04250 (11)	scaffold_12:3486539-3486725(+) (11)	NA	Q15526	Surfeit locus protein 1	AT3G17910.1	Surfeit locus 1 cytochrome c oxidase biogenesis protein 	LOC_Os03g10360.1	"SURF1, putative, expressed"	Medtr6g083260.1	Surfeit locus 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7884.1.A1_s_at	A	A1TS	POPTR_0012s04250	POPTR_0012s04250 (11)	scaffold_12:3485618-3486439(+) (11)	NA	Q15526	Surfeit locus protein 1	AT3G17910.1	Surfeit locus 1 cytochrome c oxidase biogenesis protein 	LOC_Os03g10360.1	"SURF1, putative, expressed"	Medtr6g083260.1	Surfeit locus 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7885.1.S1_a_at	A	A1TS	POPTR_0019s03790	POPTR_0019s03790 (11)	scaffold_19:3869287-3869590(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT2G02540.1	homeobox protein 21 	LOC_Os08g37400.1	"ZF-HD homeobox protein, putative, expressed"	Medtr5g020380.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Zinc finger, C2H2-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7888.1.S1_s_at	A	A1TS	POPTR_0006s01160	POPTR_0006s01160 (11)	scaffold_6:641507-641678(-) (11)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7890.1.S1_at	A	A1TS	POPTR_0009s14620	POPTR_0009s14620 (9)	scaffold_9:11425160-11425268(-) (9)	NA	P54751	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1"	AT1G08280.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os01g63970.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g069790.1	"Glycosyl transferase, family 29; Immunoglobulin/major histocompatibility complex "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
Ptp.7891.3.S1_a_at	A	A1TS	POPTR_0016s14990	POPTR_0016s14990 (11)	scaffold_16:14049536-14050047(+) (11)	NA	NA	NA	AT5G01015.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65295.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g02800.2	"CRP11 - Cysteine-rich family protein precursor, expressed"	Medtr7g081040.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7892.1.A1_at	A	A1TS	POPTR_0001s01840	POPTR_0001s01840 (11)	scaffold_1:1346102-1346485(+) (11)	NA	P23922	Transcription factor HBP-1a	AT2G35530.1	basic region/leucine zipper transcription factor 16 	LOC_Os12g13170.2	"transcription factor, putative, expressed"	Medtr5g028830.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.7894.1.A1_at	A	A1TS	POPTR_0005s05900	POPTR_0005s05900 (10)	scaffold_5:3877222-3878285(+) (10)	NA	Q10Y48	Uridylate kinase	AT3G18680.1	Amino acid kinase family protein 	LOC_Os01g73450.1	"amino acid kinase, putative, expressed"	Medtr4g142340.1	Aspartate/glutamate/uridylate kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
Ptp.7895.1.A1_s_at	A	A1TS	POPTR_0014s10700	POPTR_0014s10700 (11)	scaffold_14:7986614-7987058(-) (11)	NA	Q8L5W8	Transcription factor PIL1	AT2G46970.1	phytochrome interacting factor 3-like 1 	LOC_Os01g18290.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g103000.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.7899.1.S1_at	A	A1TA	POPTR_0007s10770	POPTR_0007s10770 (10)	scaffold_7:10830161-10830572(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.79.1.S1_at	A	A1TS	POPTR_0017s01890	POPTR_0017s01890 (11)	scaffold_17:1385173-1386542(-) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g38260.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.79.1.S1_x_at	A	A1TS	POPTR_0017s01890	POPTR_0017s01890 (11)	scaffold_17:1385173-1386542(-) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g38260.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.7901.1.S1_at	A	A1TS	POPTR_0009s11780	POPTR_0009s11780 (11)	scaffold_9:9711340-9711427(+) (11)	NA	Q8VY05	SWI/SNF complex subunit SWI3D	AT4G34430.3	DNA-binding family protein 	LOC_Os03g51220.1	"SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed"	Medtr4g095380.1	"Zinc finger, ZZ-type; SWIRM; Homeodomain-related "	NA	GO:0008270|zinc ion binding	NA
Ptp.7903.1.S1_at	A	A1TS	POPTR_0001s34440	POPTR_0001s34440 (11)	scaffold_1:32581786-32582088(+) (11)	NA	NA	NA	AT1G29350.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os01g47430.2	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr4g136700.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7904.1.S1_at	A	A1TS	POPTR_0006s10920	POPTR_0006s10920 (9)	scaffold_6:8290766-8291581(+) (9)	NA	NA	NA	AT2G38550.1	Transmembrane proteins 14C 	LOC_Os01g60650.1	"non-green plastid inner envelope membrane protein, putative, expressed"	Medtr7g080440.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
Ptp.7905.1.S1_at	A	A1TS	POPTR_0003s14480	POPTR_0003s14480 (9)	scaffold_3:14567439-14567819(+) (9)	NA	Q7XJU0	Uncharacterized basic helix-loop-helix protein At1g64625	AT2G27230.2	transcription factor-related 	LOC_Os02g45170.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7906.1.S1_s_at	A	A1TS	POPTR_0011s16450	POPTR_0011s16450 (11)	scaffold_11:18364124-18364478(-) (11)	NA	NA	NA	AT2G34780.2	maternal effect embryo arrest 22 	LOC_Os01g56290.1	expressed protein	AC147501_20.1	hypothetical protein AC147501.9 80184-71093 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
Ptp.7907.1.A1_at	A	A1TS	POPTR_0013s02590	POPTR_0013s02590 (11)	scaffold_13:1532355-1532833(-) (11)	NA	Q6AXS0	Sodium/potassium/calcium exchanger 6	AT1G08960.1	cation exchanger 11 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr7g139480.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
Ptp.7909.2.A1_at	A	A1MS	POPTR_0017s04370	POPTR_0017s04370 (9)	NA	NA	P84786	Ribosome-inactivating protein charybdin	NA	NA	LOC_Os01g06740.1	"ribosome inactivating protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0017148|negative regulation of translation	GO:0030598|rRNA N-glycosylase activity	NA
Ptp.791.1.S1_s_at	A	A1TS	POPTR_0009s09870	POPTR_0009s09870 (11)	scaffold_9:8645619-8646036(+) (11)	NA	P31657	Probable cinnamyl alcohol dehydrogenase	AT3G19450.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os02g09490.1	"dehydrogenase, putative, expressed"	Medtr5g032800.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.7910.1.S1_at	A	A1TS	POPTR_0003s06390	POPTR_0003s06390 (10)	scaffold_3:7876688-7876978(-) (11)	NA	NA	NA	AT1G54150.1	E3 Ubiquitin ligase family protein 	LOC_Os03g08000.1	expressed protein	Medtr8g025010.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7912.1.S1_at	A	A1TS	POPTR_0018s09750	POPTR_0018s09750 (11)	scaffold_18:10784716-10785026(-) (11)	NA	Q03194	Plasma membrane ATPase 4	AT2G18960.1	H(+)-ATPase 1 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.7915.1.S1_at	A	A1TS	POPTR_0009s14890	POPTR_0009s14890 (10)	scaffold_9:11573418-11573834(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7918.1.S1_s_at	A	A1TS	POPTR_0007s02140	POPTR_0007s02140 (11)	scaffold_7:1265566-1266034(+) (11)	NA	Q8VZR6	Probable inositol transporter 1	AT2G43330.1	inositol transporter 1 	LOC_Os04g41460.1	"transporter family protein, putative, expressed"	Medtr7g005590.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.7919.1.S1_s_at	A	A1MA	POPTR_0009s10990	POPTR_0009s10990 (11)	scaffold_9:9284967-9285061(+) (11)	NA	O74503	Upstream activation factor subunit spp27	AT1G49520.1	SWIB complex BAF60b domain-containing protein 	LOC_Os03g55570.1	"upstream activation factor subunit spp27, putative, expressed"	Medtr5g017990.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.792.1.S1_at	A	A1TS	POPTR_0016s09010	POPTR_0016s09010 (11)	scaffold_16:6839473-6839509(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.792.1.S1_s_at	A	A1TS	POPTR_0016s09010	POPTR_0016s09010 (11)	scaffold_16:6839548-6839972(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7921.1.S1_a_at	A	A1TS	POPTR_0005s18890	POPTR_0005s18890 (11)	scaffold_5:17305527-17305736(-) (11)	NA	Q9URY7	Putative formamidase C869.04	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008152|metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	NA
Ptp.7921.1.S1_s_at	A	A1TS	POPTR_0005s18890	POPTR_0005s18890 (11)	scaffold_5:17304869-17305684(-) (11)	NA	Q9URY7	Putative formamidase C869.04	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008152|metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	NA
Ptp.7927.1.S1_s_at	A	A1TS	POPTR_0002s16770	POPTR_0002s16770 (9)	scaffold_2:12537242-12537359(+) (11)	NA	NA	NA	AT4G01210.1	glycosyl transferase family 1 protein 	LOC_Os01g43380.1	"glycosyltransferase family protein 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7929.1.S1_at	A	A1TS	POPTR_0013s00920	POPTR_0013s00920 (11)	scaffold_13:467770-468055(-) (11)	NA	O80482	Transcription factor bHLH149	AT1G09250.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g19780.1	expressed protein	Medtr8g137080.1	transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7930.1.S1_s_at	A	A1TA	POPTR_0005s13780	POPTR_0005s13780 (11)	scaffold_5:10774584-10774767(-) (11)	POPTR_0007s12170 (7)	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.1	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.7931.1.A1_s_at	A	A1TS	POPTR_0006s09410	POPTR_0006s09410 (9)	scaffold_6:6935059-6935102(+) (9)	NA	NA	NA	AT3G54000.1	CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr7g071270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7932.1.S1_at	A	A1TS	POPTR_0011s07250	POPTR_0011s07250 (11)	scaffold_11:8006977-8007412(-) (11)	NA	C0LGQ4	Probable LRR receptor-like serine/threonine-protein kinase MRH1	AT4G18640.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr4g134770.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.7934.1.S1_at	A	A1MS	POPTR_0014s04690	POPTR_0014s04690 (9)	scaffold_14:3595065-3595772(+) (9)	NA	NA	NA	AT1G02120.1	GRAM domain family protein 	LOC_Os07g30940.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7935.1.S1_a_at	A	A1TS	POPTR_0008s15050	POPTR_0008s15050 (11)	scaffold_8:10029317-10029499(-) (11)	NA	Q94AZ2	Sugar transport protein 13	AT5G26340.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.7937.1.S1_s_at	A	A1TS	POPTR_0019s05380	POPTR_0019s05380 (11)	scaffold_19:5722719-5722973(-) (11)	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
Ptp.794.1.S1_s_at	A	A2TS	POPTR_0006s25760	POPTR_0018s00610 (11)//POPTR_0006s25760 (11)	scaffold_18:541496-542760(-) (11)//scaffold_6:24141315-24142641(-) (11)	NA	Q8LGF7	Probable ubiquitin-conjugating enzyme E2 21	AT5G25760.2	peroxin4 	LOC_Os02g42314.2	"ubiquitin-conjugating enzyme, putative, expressed"	AC225507_19.1	"Ubiquitin-conjugating enzyme, E2 AC225507.11 87281-91188 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.7940.1.S1_at	A	A1MS	POPTR_0007s13450	POPTR_0007s13450 (9)	scaffold_7:13536069-13536540(+) (10)	NA	Q8BMG8	Mitochondrial folate transporter/carrier	AT5G66380.1	folate transporter 1 	LOC_Os03g52430.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g092650.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7942.1.S1_at	A	A1TS	POPTR_0015s10750	POPTR_0015s10750 (10)	scaffold_15:11581898-11582654(-) (10)	NA	O75643	U5 small nuclear ribonucleoprotein 200 kDa helicase	AT1G20960.2	"U5 small nuclear ribonucleoprotein helicase, putative "	LOC_Os02g01740.1	"U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed"	Medtr2g076960.1	AAA ATPase; Sec63; ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.7944.1.S1_s_at	A	A1TS	POPTR_0014s09390	POPTR_0014s09390 (11)	scaffold_14:6966807-6967229(-) (11)	NA	Q9M365	Probable F-box protein At3g61730	AT5G36000.1	BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g11990.1	expressed protein	AC235758_10.1	Cyclin-like F-box AC235758.1 51077-54013 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7946.1.S1_at	A	A1MS	POPTR_0011s13250	POPTR_0011s13250 (10)	scaffold_11:15947563-15948120(-) (10)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr3g020920.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7947.1.S1_s_at	A	A1TS	POPTR_0004s04900	POPTR_0004s04900 (11)	scaffold_4:3666879-3667135(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.7949.1.S1_at	A	A1TS	POPTR_0008s08460	POPTR_0008s08460 (11)	scaffold_8:5241806-5242514(-) (11)	NA	Q03640	Tricalbin-3	AT3G19830.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os02g58230.1	"C2 domain containing protein, putative, expressed"	Medtr8g112680.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.795.3.S1_s_at	A	A1MS	POPTR_0007s12770	POPTR_0007s12770 (11)	scaffold_7:13032037-13032335(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7952.1.S1_at	A	A1TS	POPTR_0003s09330	POPTR_0003s09330 (9)	scaffold_3:10641856-10642095(-) (9)	NA	O23617	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5"	AT4G17770.1	trehalose phosphatase/synthase 5 	LOC_Os09g23350.1	"trehalose synthase, putative, expressed"	Medtr4g156760.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.7953.1.S1_at	A	A1TS	POPTR_0018s13050	POPTR_0018s13050 (10)	scaffold_18:13514837-13517266(+) (10)	NA	Q9LDI3	CBL-interacting serine/threonine-protein kinase 24	AT5G35410.1	Protein kinase superfamily protein 	LOC_Os06g40370.1	"CAMK_KIN1/SNF1/Nim1_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g120590.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.7954.1.S1_at	A	A1TS	POPTR_0009s11720	POPTR_0009s11720 (9)	scaffold_9:9675097-9675359(-) (9)	NA	Q942D4	BURP domain-containing protein 3	AT1G49320.1	unknown seed protein like 1 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr3g159620.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7955.1.S1_at	A	A1MS	POPTR_0010s04780	POPTR_0010s04780 (11)	scaffold_10:5928009-5928386(-) (11)	NA	O04536	Probable galacturonosyltransferase-like 9	AT1G70090.2	glucosyl transferase family 8 	LOC_Os02g50600.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr5g037690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.7956.2.S1_s_at	A	A2TS	POPTR_0003s02450	POPTR_0003s02450 (11)//POPTR_0003s02460 (11)	scaffold_3:2541350-2541511(+) (11)//scaffold_3:2553727-2553888(+) (11)	NA	D4N502	Codeine O-demethylase	AT1G49390.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08032.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr8g088440.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.7958.1.S1_at	A	A1TS	POPTR_0005s21390	POPTR_0005s21390 (9)	scaffold_5:20495752-20495987(+) (9)	NA	NA	NA	AT1G21200.1	sequence-specific DNA binding transcription factors 	LOC_Os12g06640.2	"homeodomain, putative, expressed"	Medtr1g125320.1	"Homeodomain-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.796.2.S1_at	A	A1TS	POPTR_0003s17010	POPTR_0003s17010 (11)	scaffold_3:16521088-16521124(+) (11)	NA	P10708	"Chlorophyll a-b binding protein 7, chloroplastic"	AT3G61470.1	photosystem I light harvesting complex gene 2 	LOC_Os07g38960.1	"chlorophyll A-B binding protein, putative, expressed"	AC233662_10.1	Chlorophyll A-B binding protein AC233662.1 39478-42517 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.7962.1.S1_a_at	A	A1TS	POPTR_0004s02870	POPTR_0004s02870 (11)	scaffold_4:1914976-1915430(-) (11)	POPTR_0011s03560 (6)	Q94JL3	Transcription factor bHLH112	AT1G61660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g42180.1	"ethylene-responsive protein related, putative"	Medtr2g011150.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.7965.1.S1_a_at	A	A1TS	POPTR_0005s21110	POPTR_0005s21110 (11)	scaffold_5:20246811-20247029(-) (11)	NA	C0LGV1	LRR receptor-like serine/threonine-protein kinase RCH1	AT5G48940.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os04g04330.2	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr3g124960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.7965.2.S1_s_at	A	A1TS	POPTR_0014s14620	POPTR_0014s14620 (11)	scaffold_14:10686126-10686450(-) (11)	NA	Q9Z321	DNA topoisomerase 3-beta-1	AT2G32000.1	"DNA topoisomerase, type IA, core "	LOC_Os09g32450.1	"DNA topoisomerase 3 protein, putative, expressed"	Medtr3g104340.1	DNA topoisomerase I; N-6 Adenine-specific DNA methylase; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003916|DNA topoisomerase activity	GO:0005694|chromosome
Ptp.7966.1.S1_s_at	A	A1TS	POPTR_0003s15190	POPTR_0003s15190 (11)	scaffold_3:15048990-15049042(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7971.1.S1_s_at	A	A1TS	POPTR_0005s22640	POPTR_0005s22640 (11)	scaffold_5:21560096-21561112(-) (11)	NA	Q9C8L4	"Hydroxyacylglutathione hydrolase 3, mitochondrial"	AT1G53580.1	glyoxalase II  3 	LOC_Os01g47690.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr5g077130.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7972.2.S1_at	A	A1TS	POPTR_0001s35480	POPTR_0001s35480 (11)	scaffold_1:33812976-33814394(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G50180.1	Protein kinase superfamily protein 	LOC_Os02g38080.2	"protein kinase domain containing protein, expressed"	Medtr3g114810.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7976.1.S1_at	A	A2TS	POPTR_0015s08660	POPTR_0015s08660 (11)//POPTR_0012s08160 (9)	scaffold_12:9210983-9211032(+) (9)//scaffold_15:9975452-9975506(+) (11)	NA	Q7Z494	Nephrocystin-3	AT1G27500.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7976.1.S1_s_at	A	A1TS	POPTR_0015s08660	POPTR_0015s08660 (11)	scaffold_15:9975897-9976299(+) (11)	NA	Q7Z494	Nephrocystin-3	AT1G27500.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7977.1.A1_at	A	A1TS	POPTR_0006s09300	POPTR_0006s09300 (10)	scaffold_6:6829938-6830467(-) (10)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT3G53940.1	Mitochondrial substrate carrier family protein 	LOC_Os03g16080.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g088430.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.798.1.A1_at	A	A1TS	POPTR_0005s08430	POPTR_0005s08430 (11)	scaffold_5:5818988-5819368(+) (11)	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.798.1.A1_x_at	A	A1TS	POPTR_0005s08430	POPTR_0005s08430 (11)	scaffold_5:5818847-5819377(+) (11)	NA	P51414	60S ribosomal protein L26-1	AT3G49910.1	Translation protein SH3-like family protein 	LOC_Os12g05430.1	"ribosomal protein L24, putative, expressed"	Medtr2g014180.1	Ribosomal protein L24/L26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7980.1.S1_at	A	A1TS	POPTR_0006s24060	POPTR_0006s24060 (9)	scaffold_6:22747110-22747988(-) (9)	NA	NA	NA	AT5G26160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G20610.1); Has 197 Blast hits to 158 proteins in 44 species: Archae - 0; Bacteria - 14; Metazoa - 28; Fungi - 15; Plants - 117; Viruses - 2; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os01g51640.1	expressed protein	Medtr1g019330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7982.1.S1_s_at	A	A1TS	POPTR_0006s08180	POPTR_0006s08180 (11)	scaffold_6:5943770-5945880(-) (11)	NA	NA	NA	AT5G24710.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g46510.1	"peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed"	Medtr7g134460.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7983.1.S1_s_at	A	A1TS	POPTR_0015s08020	POPTR_0015s08020 (11)	scaffold_15:9301189-9301629(-) (11)	NA	Q869R9	Myb-like protein J	AT1G19000.2	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr5g038100.1	"Zinc finger, CCHC-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7984.1.S1_s_at	A	A1TS	POPTR_0002s10970	POPTR_0002s10970 (11)	scaffold_2:8003251-8003334(+) (11)	NA	Q9STV4	CBL-interacting serine/threonine-protein kinase 8	AT4G24400.1	CBL-interacting protein kinase 8 	LOC_Os01g35184.2	"CAMK_KIN1/SNF1/Nim1_like.10 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g076080.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.7985.1.S1_at	A	A1TS	POPTR_0019s08340	POPTR_0019s08340 (10)	scaffold_19:9847679-9847867(-) (10)	NA	Q8VZR7	Probable peptide/nitrate transporter At2g40460	AT2G40460.1	Major facilitator superfamily protein 	LOC_Os10g33210.1	"peptide transporter PTR3-A, putative, expressed"	Medtr3g097370.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.7988.1.S1_at	A	A1MS	POPTR_0003s07420	POPTR_0003s07420 (11)	scaffold_3:8982584-8982984(-) (11)	NA	Q39079	Chaperone protein dnaJ 13	AT2G35720.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g36370.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g012600.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.799.1.S1_s_at	A	A1TS	POPTR_0015s06060	POPTR_0015s06060 (11)	scaffold_15:6352642-6354622(+) (11)	NA	P35133	Ubiquitin-conjugating enzyme E2 10	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.7990.1.A1_s_at	A	A1TS	POPTR_0005s27320	POPTR_0005s27320 (11)	scaffold_5:25020917-25021345(-) (11)	NA	P56941	Niemann-Pick C1 protein	AT4G38350.1	Patched family protein 	LOC_Os04g47590.1	"niemann-Pick C1 protein precursor, putative, expressed"	Medtr5g106700.1	Sterol-sensing 5TM box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7991.1.A1_at	A	A1TS	POPTR_0014s05510	POPTR_0014s05510 (11)	scaffold_14:4128059-4128468(-) (11)	NA	Q8RXD6	E3 ubiquitin-protein ligase BRE1-like 1	AT2G44950.1	histone mono-ubiquitination 1 	LOC_Os04g46450.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g040330.1	"Zinc finger, DksA/TraR C4-type; Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7993.1.S1_at	A	A1TS	POPTR_0014s07060	POPTR_0014s07060 (9)	scaffold_14:5334588-5335032(+) (9)	NA	O65351	Subtilisin-like protease	AT1G01900.1	subtilase family protein 	LOC_Os04g48416.1	"OsSub45 - Putative Subtilisin homologue, expressed"	Medtr7g083510.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.7995.1.S1_at	A	A1MS	POPTR_0009s10140	POPTR_0009s10140 (9)	scaffold_9:8796290-8796799(+) (9)	NA	Q8W3M4	Uncharacterized protein At4g06744	AT4G06744.1	Leucine-rich repeat (LRR) family protein 	LOC_Os04g57430.1	"uncharacterized protein At4g06744 precursor, putative"	Medtr4g130400.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
Ptp.7996.1.S1_at	A	A1TS	POPTR_0011s05280	POPTR_0011s05280 (9)	scaffold_11:5160166-5160318(-) (9)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7998.1.A1_at	A	A1TS	POPTR_0005s28070	POPTR_0005s28070 (11)	scaffold_5:25461035-25461481(+) (11)	NA	NA	NA	AT1G21050.1	"Protein of unknown function, DUF617 "	LOC_Os02g47980.1	"DUF617 domain containing protein, expressed"	Medtr3g102280.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.7999.1.S1_at	A	A1MA	POPTR_0003s14370	POPTR_0003s14370 (9)	scaffold_3:14453522-14454015(+) (9)	NA	Q54ML1	Glutamine-dependent NAD(+) synthetase	AT1G55090.1	carbon-nitrogen hydrolase family protein 	LOC_Os07g07260.1	"glutamine-dependent NAD, putative, expressed"	NA	NA	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
Ptp.8.1.A1_at	A	A1MS	POPTR_0001s43610	POPTR_0001s43610 (11)	scaffold_1:43816627-43816679(+) (11)//scaffold_1:45322594-45322646(+) (11)	NA	NA	NA	AT5G54900.1	RNA-binding protein 45A 	LOC_Os03g37270.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.80.1.S1_s_at	A	A1TS	POPTR_0009s11580	POPTR_0009s11580 (11)	scaffold_9:9600976-9601396(-) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.800.1.S1_s_at	A	A1TS	POPTR_0009s12790	POPTR_0009s12790 (11)	scaffold_9:10376783-10377641(-) (11)	NA	P59227	V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5	AT4G34720.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os02g34510.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.8005.1.S1_at	A	A1TS	POPTR_0018s12110	POPTR_0018s12110 (9)	scaffold_18:12684568-12685207(-) (9)	NA	NA	NA	AT5G35180.2	Protein of unknown function (DUF1336) 	LOC_Os08g34060.2	"DUF1336 domain containing protein, expressed"	Medtr1g120740.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8006.1.S1_s_at	A	A1TS	POPTR_0018s07360	POPTR_0018s07360 (11)	scaffold_18:7571931-7572117(+) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G43220.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.1	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8010.1.A1_s_at	A	A1TS	POPTR_0013s08170	POPTR_0013s08170 (10)	scaffold_13:7193741-7195785(-) (11)	NA	Q9Y394	Dehydrogenase/reductase SDR family member 7	AT3G03330.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os11g16410.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g090010.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8014.1.S1_at	A	A1TS	POPTR_0008s11870	POPTR_0008s11870 (10)	scaffold_8:7616532-7616945(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8015.1.S1_at	A	A1TS	POPTR_0011s04490	POPTR_0011s04490 (11)	scaffold_11:4454538-4455645(-) (11)	NA	Q8H5X5	Secretory carrier-associated membrane protein 1	AT1G61250.1	secretory carrier 3 	LOC_Os07g37740.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
Ptp.8017.2.A1_a_at	A	A1MS	POPTR_0003s08150	POPTR_0003s08150 (9)	scaffold_3:9568341-9570471(-) (11)	NA	Q8LB10	"ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic"	AT4G17040.1	CLP protease R subunit 4 	LOC_Os01g16530.1	"OsClp1 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.8018.1.S1_at	A	A1TS	POPTR_0016s07250	POPTR_0016s07250 (10)	scaffold_16:5087745-5088296(-) (10)	NA	P42730	Heat shock protein 101	AT3G52490.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g33980.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr1g112350.1	"Immunoglobulin/major histocompatibility complex; Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.802.1.S1_s_at	A	A1TS	POPTR_0006s09410	POPTR_0006s09410 (11)	scaffold_6:6936657-6936913(+) (11)	NA	NA	NA	AT3G54000.1	CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr7g071270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8020.1.A1_at	A	A2TA	POPTR_0001s05470	POPTR_0001s05470 (11)//POPTR_0001s05450 (9)	scaffold_1:4188768-4189075(-) (9)//scaffold_1:4196712-4197109(+) (11)	NA	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.8020.2.A1_at	A	A1TS	POPTR_0001s05470	POPTR_0001s05470 (11)	scaffold_1:4196564-4196974(-) (11)	POPTR_0001s05450 (6)	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.8022.1.S1_s_at	A	A1TS	POPTR_0320s00210	POPTR_0320s00210 (11)	scaffold_320:8093-8599(-) (11)//scaffold_4:17798925-17799431(+) (11)	NA	Q9URY4	Putative amidase C869.01	AT4G34880.1	Amidase family protein 	LOC_Os04g10530.1	"amidase, putative, expressed"	Medtr4g147350.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
Ptp.8023.1.S1_s_at	A	A1TS	POPTR_0018s03710	POPTR_0018s03710 (11)	scaffold_18:3159003-3161740(-) (11)	NA	NA	NA	AT5G10710.1	"INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g21610.1	expressed protein	Medtr3g133360.1	hypothetical protein 	GO:0051301|cell division||GO:0007059|chromosome segregation	GO:0005515|protein binding	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
Ptp.8024.1.S1_at	A	A1MA	POPTR_0005s23010	POPTR_0005s23010 (9)	scaffold_5:21859236-21859729(-) (11)	NA	Q9FT81	Transcription factor TT8	AT4G09820.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g11020.1	rc - bHLH transcription factor regulating proanthocyanidin production in seeds	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8027.1.S1_at	A	A1TS	POPTR_0015s08410	POPTR_0015s08410 (10)	scaffold_15:9692851-9693398(+) (10)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50840.2	"BAH domain containing protein, putative, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
Ptp.803.2.S1_a_at	A	A1TS	POPTR_0010s25740	POPTR_0010s25740 (11)	scaffold_10:21279186-21280247(-) (11)	NA	Q9LHP1	60S ribosomal protein L7-4	AT3G13580.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.8030.1.S1_at	A	A1TS	POPTR_0014s01940	POPTR_0014s01940 (11)	scaffold_14:1746509-1746850(-) (11)	NA	P49098	Cytochrome b5	AT5G48810.1	cytochrome B5 isoform D 	LOC_Os10g37420.2	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	AC232874_19.1	"Cytochrome b5, related AC232874.1 63163-63766 E EGN_Mt090430 200"	NA	GO:0020037|heme binding	NA
Ptp.8030.1.S1_s_at	A	A1TS	POPTR_0014s01940	POPTR_0014s01940 (11)	scaffold_14:1746367-1746775(-) (11)	NA	P49098	Cytochrome b5	AT5G48810.1	cytochrome B5 isoform D 	LOC_Os10g37420.2	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	AC232874_19.1	"Cytochrome b5, related AC232874.1 63163-63766 E EGN_Mt090430 200"	NA	GO:0020037|heme binding	NA
Ptp.8031.1.A1_at	A	A1TS	POPTR_0009s12840	POPTR_0009s12840 (9)	scaffold_9:10408596-10409040(+) (9)	NA	Q9T0J6	tRNA-dihydrouridine synthase 3-like	AT4G38890.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os04g02730.1	"tRNA-dihydrouridine synthase 3-like, putative, expressed"	Medtr3g163110.1	"Zinc finger, CCCH-type; Dihydrouridine synthase, DuS "	GO:0044260|cellular macromolecule metabolic process||GO:0008033|tRNA processing||GO:0055114|oxidation reduction	GO:0003676|nucleic acid binding||GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity||GO:0008270|zinc ion binding	NA
Ptp.8034.1.S1_at	A	A1MS	POPTR_0007s05110	POPTR_0007s05110 (10)	scaffold_7:3306061-3306587(+) (10)	NA	Q5ZLV4	tRNA (cytosine-5-)-methyltransferase NSUN2	AT2G22400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g29630.1	"NOL1/NOP2/sun family protein, putative, expressed"	Medtr3g101990.1	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8036.1.S1_at	A	A1TS	POPTR_0014s06660	POPTR_0014s06660 (11)	scaffold_14:5055472-5056543(-) (11)	NA	Q9LPC6	Armadillo repeat-containing kinesin-like protein 2	AT1G01950.1	armadillo repeat kinesin 2 	LOC_Os06g04560.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.8038.1.A1_s_at	A	A1TS	POPTR_0009s10480	POPTR_0009s10480 (11)	scaffold_9:9003277-9003563(-) (11)	NA	P40781	Protein CYPRO4	AT3G19240.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g08190.1	"CYPRO4, putative, expressed"	Medtr4g129640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8039.1.S1_at	A	A1TS	POPTR_0003s11320	POPTR_0003s11320 (10)	scaffold_3:12166158-12166711(-) (10)//scaffold_3:19124117-19124670(-) (9)	POPTR_0003s20650 (8)	P17407	21 kDa protein	AT4G12390.1	pectin methylesterase inhibitor 1 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr5g012150.1	Pectinesterase inhibitor 	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.804.1.S1_at	A	A1TS	POPTR_0015s15690	POPTR_0015s15690 (11)	scaffold_15:14912247-14914007(+) (11)	NA	Q9MAS5	Putative vesicle-associated membrane protein 726	AT1G04760.1	vesicle-associated membrane protein 726 	LOC_Os03g06960.1	"vesicle-associated membrane protein, putative, expressed"	Medtr4g114750.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.8040.1.S1_at	A	A1TS	POPTR_0001s14410	POPTR_0001s14410 (9)	scaffold_1:11305027-11305418(-) (9)	NA	Q55680	Uncharacterized protein sll0005	AT3G24190.1	Protein kinase superfamily protein 	LOC_Os02g57160.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8041.1.A1_at	A	A1TS	POPTR_0017s07250	POPTR_0017s07250 (11)	scaffold_17:5627579-5627802(-) (11)	NA	Q54PY7	Probable mitochondrial 2-oxoglutarate/malate carrier protein	AT2G22500.1	uncoupling protein 5 	LOC_Os08g37370.2	"mitochondrial carrier protein, putative, expressed"	Medtr5g033920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8041.2.A1_s_at	A	A4TS	POPTR_0017s07250	POPTR_0017s07270 (11)//POPTR_0017s07510 (11)//POPTR_0017s07250 (11)//POPTR_0017s07260 (11)	scaffold_17:5627892-5628096(-) (11)//scaffold_17:5634920-5635124(-) (11)//scaffold_17:5640000-5640204(-) (11)//scaffold_17:5843876-5844080(+) (11)	POPTR_0017s07280 (7)	Q54PY7	Probable mitochondrial 2-oxoglutarate/malate carrier protein	AT2G22500.1	uncoupling protein 5 	LOC_Os08g37370.2	"mitochondrial carrier protein, putative, expressed"	Medtr5g033920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8042.1.S1_at	A	A1TS	POPTR_0017s12090	POPTR_0017s12090 (9)	scaffold_17:12249784-12250433(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8043.1.S1_at	A	A1MS	POPTR_0019s09110	POPTR_0019s09110 (9)	scaffold_19:10680540-10682737(+) (9)	NA	Q68F45	WD repeat domain phosphoinositide-interacting protein 3	AT2G40810.2	homolog of yeast autophagy 18C 	LOC_Os01g07400.2	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8043.1.S1_s_at	A	A1TS	POPTR_0019s09110	POPTR_0019s09110 (11)	scaffold_19:10680603-10682623(+) (11)	NA	Q68F45	WD repeat domain phosphoinositide-interacting protein 3	AT2G40810.2	homolog of yeast autophagy 18C 	LOC_Os01g07400.2	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8044.1.S1_at	A	A1TA	POPTR_0004s01880	POPTR_0004s01880 (9)	scaffold_4:1158334-1158739(+) (11)	NA	O80690	Beta-glucosidase 46	AT1G61820.1	beta glucosidase 46 	LOC_Os04g43360.1	"Os4bglu14 - monolignol beta-glucoside homologue without catalytic acid/base, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.8046.1.S1_s_at	A	A2TS	POPTR_0001s33290	POPTR_0001s33290 (9)//POPTR_0017s09590 (9)	scaffold_1:31477260-31477292(-) (9)//scaffold_17:8214950-8214982(-) (9)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os09g33450.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.8049.1.S1_s_at	A	A1TS	POPTR_0004s01650	POPTR_0004s01650 (11)	scaffold_4:1000755-1001068(-) (11)	NA	NA	NA	AT1G11655.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.805.1.S1_at	A	A1TS	POPTR_0005s04090	POPTR_0005s04090 (11)	scaffold_5:2706546-2706804(+) (11)	NA	Q9ZVL6	"UPF0603 protein At1g54780, chloroplastic"	AT1G54780.1	thylakoid lumen 18.3 kDa protein 	LOC_Os05g33280.1	"thylakoid lumen protein, putative, expressed"	Medtr1g099000.1	Protein of unknown function DUF477 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.805.2.S1_a_at	A	A1TS	POPTR_0005s04090	POPTR_0005s04090 (11)	scaffold_5:2705103-2705144(+) (11)	NA	Q9ZVL6	"UPF0603 protein At1g54780, chloroplastic"	AT1G54780.1	thylakoid lumen 18.3 kDa protein 	LOC_Os05g33280.1	"thylakoid lumen protein, putative, expressed"	Medtr1g099000.1	Protein of unknown function DUF477 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8052.1.S1_at	A	A1MS	POPTR_0005s28170	POPTR_0005s28170 (11)	scaffold_5:25520799-25521307(-) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT1G21080.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os08g41110.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.8053.1.S1_at	A	A1TS	POPTR_0004s06420	POPTR_0004s06420 (11)	scaffold_4:5170877-5171250(+) (11)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr4g165410.1	"LRR receptor-like serine/threonine-protein kinase FLS2 precursor, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.8054.1.S1_at	A	A1TS	POPTR_0009s10630	POPTR_0009s10630 (9)	scaffold_9:9092876-9093298(-) (9)	NA	NA	NA	AT2G15695.1	"Protein of unknown function DUF829, transmembrane 53 "	LOC_Os11g40070.1	expressed protein	Medtr4g129420.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8055.1.S1_at	A	A1TS	POPTR_0018s11310	POPTR_0018s11310 (11)	scaffold_18:12117227-12117609(+) (11)	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
Ptp.8056.1.S1_at	A	A1TS	POPTR_0001s31800	POPTR_0001s31800 (9)	scaffold_1:30164875-30165364(-) (9)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os02g36340.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr4g120840.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
Ptp.8056.1.S1_s_at	A	A1TS	POPTR_0001s31800	POPTR_0001s31800 (11)	scaffold_1:30164903-30165276(-) (11)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os02g36340.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr4g120840.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
Ptp.8059.1.S1_a_at	A	A1TS	POPTR_0001s07070	POPTR_0001s07070 (11)	scaffold_1:5387398-5389210(+) (11)	NA	P50846	KHG/KDPG aldolase	NA	NA	LOC_Os07g12160.1	"KHG/KDPG aldolase, putative, expressed"	Medtr7g009060.1	KDPG and KHG aldolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.8062.1.S1_s_at	A	A1TS	POPTR_0001s33340	POPTR_0001s33340 (11)	scaffold_1:31533996-31534404(+) (11)	NA	Q7G8Y5	Glutaredoxin-C1	AT3G02000.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g027340.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.8066.1.S1_s_at	A	A1TS	POPTR_0010s15280	POPTR_0010s15280 (11)	scaffold_10:14611887-14612330(+) (11)	NA	NA	NA	AT5G49450.1	basic leucine-zipper 1 	LOC_Os02g03960.1	"CPuORF1 - conserved peptide uORF-containing transcript, expressed"	Medtr4g096350.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.8067.1.S1_at	A	A1TS	POPTR_0006s25700	POPTR_0006s25700 (10)	scaffold_6:24078238-24079578(+) (10)	NA	Q5ZL00	Uncharacterized protein KIAA0090 homolog	AT5G11560.1	catalytics 	LOC_Os05g14170.1	expressed protein	AC225517_26.1	Quinonprotein alcohol dehydrogenase-like AC225517.6 112314-118182 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8069.1.S1_at	A	A1TS	POPTR_0005s19010	POPTR_0005s19010 (9)	scaffold_5:17582805-17583263(+) (9)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT2G14820.1	Phototropic-responsive NPH3 family protein 	LOC_Os12g39380.1	"BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr5g015880.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.807.1.S1_at	A	A1TS	POPTR_0013s14040	POPTR_0013s14040 (10)	scaffold_13:14365130-14365585(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8070.1.A1_at	A	A1TS	POPTR_0004s23170	POPTR_0004s23170 (11)	scaffold_4:21956928-21957479(+) (11)	NA	Q94CC0	Uncharacterized protein At5g49945	AT4G24330.1	Protein of unknown function (DUF1682) 	LOC_Os05g35710.2	"coiled-coil domain-containing protein 47 precursor, putative, expressed"	Medtr2g005700.1	Protein of unknown function DUF1682 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8073.1.A1_s_at	A	A1TS	POPTR_0004s21440	POPTR_0004s21440 (9)	scaffold_4:20570275-20570549(-) (9)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.8077.1.S1_at	A	A1TS	POPTR_0017s07210	POPTR_0017s07210 (11)	scaffold_17:5607452-5607703(-) (11)	NA	NA	NA	AT5G64360.4	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g31940.1	"dnaJ domain containing protein, expressed"	Medtr4g121050.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.8084.1.A1_s_at	A	A1TS	POPTR_0001s32030	POPTR_0001s32030 (11)	scaffold_1:30457627-30458127(-) (11)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.8086.1.S1_at	A	A1TS	POPTR_0001s00840	POPTR_0001s00840 (10)	scaffold_1:697770-698810(+) (10)	NA	NA	NA	AT4G25170.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os02g44010.2	expressed protein	Medtr7g040860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8089.1.S1_at	A	A1MS	POPTR_0012s14890	POPTR_0012s14890 (10)	scaffold_12:14589913-14590228(+) (11)	NA	Q5S2C4	Protein NAP1	AT2G35110.1	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.809.1.A1_at	A	A1MS	POPTR_0003s21680	POPTR_0003s21680 (9)	scaffold_3:19735102-19735276(-) (9)	NA	NA	NA	AT5G19900.1	"PRLI-interacting factor, putative "	LOC_Os02g58570.1	"PRLI-interacting factor A, putative, expressed"	Medtr1g146630.1	"PRLI-interacting factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8090.1.A1_s_at	A	A1TS	POPTR_0010s20070	POPTR_0010s20070 (11)	scaffold_10:17814825-17814984(-) (11)	NA	P44797	Adenylosuccinate lyase	AT1G36280.1	L-Aspartase-like family protein 	LOC_Os03g19930.1	"adenylosuccinate lyase, putative, expressed"	Medtr7g111520.1	Fumarate lyase; Adenylosuccinate lyase 	GO:0044281|small molecule metabolic process||GO:0006188|IMP biosynthetic process	"GO:0004018|""N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"""	NA
Ptp.8092.1.S1_at	A	A1MS	POPTR_0001s21780	POPTR_0001s21780 (10)	scaffold_1:20276161-20279940(+) (10)	NA	NA	NA	AT1G71240.2	Plant protein of unknown function (DUF639) 	LOC_Os01g64870.1	expressed protein	Medtr2g007450.1	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8096.1.S1_s_at	A	A1TS	POPTR_0014s08250	POPTR_0014s08250 (11)	scaffold_14:6130924-6130966(-) (11)	NA	NA	NA	AT2G46040.1	ARID/BRIGHT DNA-binding domain;ELM2 domain protein 	LOC_Os04g08410.1	"ELM2 domain containing protein, putative, expressed"	Medtr7g087830.1	ELM2; AT-rich interaction region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.81.1.S1_at	A	A1TS	POPTR_0005s17870	POPTR_0005s17870 (9)	scaffold_5:15686889-15687432(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8100.1.S1_a_at	A	A1TS	POPTR_0007s06990	POPTR_0007s06990 (11)	scaffold_7:5338461-5338949(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8105.1.S1_at	A	A1TS	POPTR_0010s24220	POPTR_0010s24220 (9)	scaffold_10:20532630-20533148(+) (9)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os11g37070.1	expressed protein	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8106.1.S1_at	A	A1TS	POPTR_0002s07930	POPTR_0002s07930 (11)	scaffold_2:5475490-5475887(+) (11)	NA	Q2LAE1	Histone-lysine N-methyltransferase ASHH2	AT1G77300.1	histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) 	LOC_Os02g34850.1	"histone-lysine N-methyltransferase ASHH2, putative, expressed"	Medtr1g124410.1	Nuclear protein SET; SET-related region; AWS 	NA	GO:0008270|zinc ion binding	NA
Ptp.8107.1.S1_at	A	A1TS	POPTR_0005s27830	POPTR_0005s27830 (10)	scaffold_5:25313683-25314405(+) (10)	NA	P29057	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g094670.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
Ptp.811.1.A1_at	A	A1TS	POPTR_0003s16950	POPTR_0003s16950 (9)	scaffold_3:16433644-16433936(-) (9)	NA	Q9C5U1	Histidine kinase 3	AT1G27320.1	histidine kinase 3 	LOC_Os01g69920.1	"histidine kinase, putative, expressed"	Medtr3g104030.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.8110.1.S1_at	A	A1TS	POPTR_0009s08290	POPTR_0009s08290 (11)	scaffold_9:7630706-7631219(-) (11)	NA	Q9FME8	Oligopeptide transporter 4	AT5G64410.1	oligopeptide transporter 4 	LOC_Os01g43940.1	"oligopeptide transporter, putative"	Medtr2g010070.1	"Peptidase aspartic, active site; Oligopeptide transporter OPT superfamily "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8111.1.S1_at	A	A1MS	POPTR_0006s10560	POPTR_0006s10560 (9)	scaffold_6:7905372-7905635(-) (9)	NA	Q6T486	Probable E3 ubiquitin-protein ligase rbrA	AT5G60250.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os11g01240.1	IBR domain containing protein	Medtr4g080390.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.8113.2.S1_a_at	A	A2TS	POPTR_0005s03550	POPTR_0005s03550 (11)//POPTR_0005s03560 (11)	scaffold_5:2382797-2383041(+) (11)//scaffold_5:2399346-2399590(+) (11)	POPTR_0013s02300 (8)	P38415	Lipoxygenase A	AT1G55020.1	lipoxygenase 1 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr7g139190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.8115.1.S1_s_at	A	A1TS	POPTR_0001s18750	POPTR_0001s18750 (11)	scaffold_1:15892255-15893228(+) (11)	NA	Q8HY87	Zinc phosphodiesterase ELAC protein 2	AT3G16260.1	tRNAse Z4 	LOC_Os01g13150.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr2g122460.1	"Hydrolase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8116.1.S1_at	A	A1TS	POPTR_0008s13910	POPTR_0008s13910 (10)	scaffold_8:9178212-9178652(+) (10)	NA	Q9SIS3	65-kDa microtubule-associated protein 6	AT2G01910.2	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os09g27700.2	"microtubule associated protein, putative, expressed"	Medtr1g046560.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8118.3.S1_at	A	A1TS	POPTR_0018s11530	POPTR_0018s11530 (11)	scaffold_18:12238501-12239968(-) (11)	NA	Q8RWS9	Probable cyclic nucleotide-gated ion channel 5	AT5G57940.2	cyclic nucleotide gated channel 5 	LOC_Os04g55080.1	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.812.1.S1_s_at	A	A1TS	POPTR_0004s18240	POPTR_0004s18240 (11)	scaffold_4:18205520-18205994(-) (11)	NA	P93004	Aquaporin PIP2-7	AT4G35100.2	plasma membrane intrinsic protein 3 	LOC_Os04g16450.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.8120.1.A1_at	A	A1MS	POPTR_0001s10060	POPTR_0001s10060 (11)	scaffold_1:7788678-7788835(-) (11)	NA	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
Ptp.8122.1.S1_at	A	A1TS	POPTR_0001s33500	POPTR_0001s33500 (10)	scaffold_1:31699913-31701056(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8124.1.S1_at	A	A1MS	POPTR_0017s05470	POPTR_0017s05470 (9)	scaffold_17:4330488-4331052(+) (9)	NA	Q9LTR2	"Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic"	AT3G20320.1	trigalactosyldiacylglycerol2 	LOC_Os01g74280.1	"TGD2, putative, expressed"	Medtr5g095460.1	Mammalian cell entry related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8126.1.S1_s_at	A	A1TS	POPTR_0007s00690	POPTR_0007s00690 (11)	scaffold_7:349920-350333(+) (11)	NA	Q39173	Probable NADP-dependent oxidoreductase P2	AT5G16990.1	Zinc-binding dehydrogenase family protein 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.8129.1.S1_at	A	A1TA	POPTR_0007s13780	POPTR_0007s13780 (9)	scaffold_7:13825005-13825240(+) (9)	NA	Q8VYZ3	Probable pectinesterase 53	AT5G19730.1	Pectin lyase-like superfamily protein 	LOC_Os01g53990.1	"pectinesterase, putative, expressed"	Medtr4g160050.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
Ptp.8131.1.S1_s_at	A	A1TS	POPTR_0010s08950	POPTR_0010s08950 (11)	scaffold_10:9739053-9739527(-) (11)	NA	Q9SUL7	CBL-interacting serine/threonine-protein kinase 4	AT4G14580.1	CBL-interacting protein kinase 4 	LOC_Os03g43440.1	"CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	AC233668_30.1	"NAF; Serine/threonine protein kinase, active site AC233668.2 124906-121950 E EGN_Mt090430 200"	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.8132.1.A1_at	A	A1TS	POPTR_0005s08370	POPTR_0005s08370 (10)	scaffold_5:5786547-5787383(+) (10)	NA	Q39237	Transcription factor TGA1	AT5G65210.5	bZIP transcription factor family protein 	LOC_Os04g54474.3	"transcription factor, putative, expressed"	Medtr3g100900.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.8133.1.S1_s_at	A	A1TS	POPTR_0002s02010	POPTR_0002s02010 (11)	scaffold_2:1077846-1078263(+) (11)	NA	O65351	Subtilisin-like protease	AT1G20160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30458.1	"subtilisin-like protease, putative, expressed"	Medtr3g139400.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.8134.2.S1_a_at	A	A1TS	POPTR_0018s11390	POPTR_0018s11390 (10)	scaffold_18:12156992-12157068(-) (10)	NA	Q9FDX1	F-box protein SKIP1	AT5G57900.1	SKP1 interacting partner 1 	LOC_Os08g16840.1	"OsFBL45 - F-box domain and LRR containing protein, expressed"	Medtr8g145080.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.8134.3.S1_a_at	A	A1TS	POPTR_0018s11390	POPTR_0018s11390 (11)	scaffold_18:12156504-12156990(-) (11)	NA	Q9FDX1	F-box protein SKIP1	AT5G57900.1	SKP1 interacting partner 1 	LOC_Os08g16840.1	"OsFBL45 - F-box domain and LRR containing protein, expressed"	Medtr8g145080.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.8135.1.A1_at	A	A1TS	POPTR_0013s13440	POPTR_0013s13440 (11)	scaffold_13:13922736-13923972(+) (11)	NA	Q8GY87	Probable ubiquitin-conjugating enzyme E2 26	AT1G53025.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.8135.2.S1_at	A	A1TS	POPTR_0013s13440	POPTR_0013s13440 (9)	scaffold_13:13921723-13922500(+) (9)	NA	Q8GY87	Probable ubiquitin-conjugating enzyme E2 26	AT1G53025.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.8137.1.A1_at	A	A1TS	POPTR_0009s01500	POPTR_0009s01500 (11)	scaffold_9:1895374-1895884(-) (11)	NA	O49840	"Protein kinase 2B, chloroplastic"	AT3G57120.1	Protein kinase superfamily protein 	LOC_Os02g57440.1	"LYK8, putative, expressed"	AC235487_29.1	Protein kinase-like AC235487.1 132912-131578 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.814.1.S1_at	A	A1TS	POPTR_0006s21590	POPTR_0006s21590 (9)	scaffold_6:20635641-20635922(-) (9)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G06470.1	Glutaredoxin family protein 	LOC_Os03g44650.1	"glutaredoxin, putative, expressed"	Medtr1g112130.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.8141.1.S1_at	A	A1TS	POPTR_0007s07660	POPTR_0007s07660 (11)	scaffold_7:6026693-6028663(+) (11)	NA	P83877	Thioredoxin-like protein 4A	AT5G08290.1	"mRNA splicing factor, thioredoxin-like U5 snRNP "	LOC_Os07g10256.1	"mitosis protein dim1, putative, expressed"	Medtr1g065930.1	Thioredoxin domain 2 	GO:0007067|mitosis	NA	GO:0005681|spliceosomal complex
Ptp.8141.1.S1_s_at	A	A1TS	POPTR_0007s07660	POPTR_0007s07660 (11)	scaffold_7:6028669-6028980(+) (11)	NA	P83877	Thioredoxin-like protein 4A	AT5G08290.1	"mRNA splicing factor, thioredoxin-like U5 snRNP "	LOC_Os07g10256.1	"mitosis protein dim1, putative, expressed"	Medtr1g065930.1	Thioredoxin domain 2 	GO:0007067|mitosis	NA	GO:0005681|spliceosomal complex
Ptp.8142.1.A1_at	A	A1TS	POPTR_0002s24600	POPTR_0002s24600 (9)	scaffold_2:21933288-21934607(+) (9)	NA	Q6GL77	UBX domain-containing protein 1	AT1G04850.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os02g30180.1	"ZOS2-07 - C2H2 zinc finger protein, expressed"	Medtr4g133680.1	"Ubiquitin-associated; PUG; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.8143.1.S1_s_at	A	A10TS	POPTR_0011s10120	POPTR_0011s10320 (11)//POPTR_0011s10260 (11)//POPTR_0011s10140 (11)//POPTR_0011s10120 (11)//POPTR_0011s10180 (11)//POPTR_0011s10280 (11)//POPTR_0011s10300 (11)//POPTR_0011s10220 (10)//POPTR_0011s10210 (10)//POPTR_0011s10150 (10)	scaffold_11:12628319-12628549(+) (11)//scaffold_11:12646872-12647102(+) (11)//scaffold_11:12657992-12658222(+) (10)//scaffold_11:12674517-12674747(+) (11)//scaffold_11:12681810-12686608(+) (11)//scaffold_11:12686378-12686602(+) (10)//scaffold_11:12721704-12721934(+) (11)//scaffold_11:12735951-12736181(+) (11)//scaffold_11:12742520-12742750(+) (11)//scaffold_11:12759020-12759250(+) (11)	NA	Q05047	Secologanin synthase	AT3G14690.1	"cytochrome P450, family 72, subfamily A, polypeptide 15 "	LOC_Os01g43774.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.815.1.A1_at	A	A1TS	POPTR_0015s13760	POPTR_0015s13760 (11)	scaffold_15:13558781-13559394(-) (11)	NA	Q9FNZ2	Zinc finger CCCH domain-containing protein 48	AT4G25440.1	zinc finger WD40 repeat protein 1 	LOC_Os02g45480.1	"nucleic acid binding protein, putative, expressed"	AC235567_67.1	"Zinc finger, CCCH-type AC235567.1 251711-249065 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.816.1.S1_s_at	A	A1TS	POPTR_0007s12280	POPTR_0007s12280 (11)	scaffold_7:12598238-12598730(-) (11)	NA	Q09463	RING finger protein 5	AT2G23780.1	RING/U-box superfamily protein 	LOC_Os12g43930.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.817.1.S1_a_at	A	A1TS	POPTR_0001s33950	POPTR_0001s33950 (11)	scaffold_1:32110469-32111743(-) (11)	NA	Q9FKS0	"Uridine kinase-like protein 1, chloroplastic"	AT5G40870.1	uridine kinase/uracil phosphoribosyltransferase 1 	LOC_Os09g32820.1	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.818.1.S1_at	A	A1TS	POPTR_0003s21240	POPTR_0003s21240 (11)	scaffold_3:19487042-19487170(+) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT3G13570.1	SC35-like splicing factor 30A 	LOC_Os07g43950.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.819.1.S1_s_at	A	A1TS	POPTR_0014s08960	POPTR_0014s08960 (11)	scaffold_14:6621925-6623952(-) (11)	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G01150.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os06g15400.1	expressed protein	Medtr7g143530.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.822.1.S1_at	A	A1TS	POPTR_0006s10040	POPTR_0006s10040 (11)	scaffold_6:7457335-7457610(-) (11)	NA	Q9XF88	"Chlorophyll a-b binding protein CP29.2, chloroplastic"	AT3G08940.2	light harvesting complex photosystem II 	LOC_Os07g37240.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr4g012910.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.822.1.S1_x_at	A	A1TS	POPTR_0006s10040	POPTR_0006s10040 (11)	scaffold_6:7457335-7457908(-) (11)	NA	Q9XF88	"Chlorophyll a-b binding protein CP29.2, chloroplastic"	AT3G08940.2	light harvesting complex photosystem II 	LOC_Os07g37240.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr4g012910.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.824.1.S1_x_at	A	A1TS	POPTR_0008s07450	POPTR_0008s07450 (11)	scaffold_8:4575109-4575654(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT4G14270.1	Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. 	LOC_Os03g23010.1	expressed protein	Medtr5g091120.1	"poly-binding protein C-terminal interacting protein 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.825.1.S1_at	A	A1TS	POPTR_0006s12060	POPTR_0006s12060 (11)	scaffold_6:9220463-9221274(+) (11)	NA	Q93ZG7	DEAD-box ATP-dependent RNA helicase 38	AT3G53110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g06220.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	CU179634_5.1	ATP-requiring DNA helicase RecQ; ; CU179634.6 19026-13362 H EGN_Mt090430 200	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.825.2.S1_at	A	A1TS	POPTR_0006s12060	POPTR_0006s12060 (9)	scaffold_6:9215802-9216643(+) (9)	NA	Q93ZG7	DEAD-box ATP-dependent RNA helicase 38	AT3G53110.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g06220.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	CU179634_5.1	ATP-requiring DNA helicase RecQ; ; CU179634.6 19026-13362 H EGN_Mt090430 200	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.827.1.A1_at	A	A1TS	POPTR_0005s11300	POPTR_0005s11300 (11)	scaffold_5:8184565-8184842(-) (11)	NA	B8GPV3	3-dehydroquinate synthase	AT5G66120.2	"3-dehydroquinate synthase, putative "	LOC_Os09g36800.1	"3-dehydroquinate synthase, putative, expressed"	Medtr5g022480.1	3-dehydroquinate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003856|3-dehydroquinate synthase activity	NA
Ptp.829.1.A1_at	A	A1TS	POPTR_0009s14090	POPTR_0009s14090 (11)	scaffold_9:11113365-11113466(+) (11)	NA	Q96MC6	Hippocampus abundant transcript 1 protein	AT2G16990.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr3g157380.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.83.2.S1_s_at	A	A1TS	POPTR_0005s21740	POPTR_0005s21740 (11)	scaffold_5:20845698-20845735(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.831.1.S1_s_at	A	A1TS	POPTR_0019s12110	POPTR_0019s12110 (11)	scaffold_19:13252504-13253097(+) (11)	NA	Q8LPR5	Transcription factor TCP4	AT3G15030.3	TCP family transcription factor 4 	LOC_Os01g11550.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.834.1.A1_at	A	A1TS	POPTR_0010s24640	POPTR_0010s24640 (11)	scaffold_10:20742813-20743313(-) (11)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.834.2.S1_at	A	A1MA	POPTR_0010s24640	POPTR_0010s24640 (9)	scaffold_10:20744125-20745190(+) (10)	POPTR_0008s02000 (6)//POPTR_0341s00210 (6)	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.834.3.A1_a_at	A	A1TS	POPTR_0010s24640	POPTR_0010s24640 (10)	scaffold_10:20745161-20745194(-) (10)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.834.3.A1_at	A	A1MS	POPTR_0010s24640	POPTR_0010s24640 (9)	scaffold_10:20744845-20745329(-) (9)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.835.1.S1_s_at	A	A1TS	POPTR_0001s18680	POPTR_0001s18680 (11)	scaffold_1:15820263-15820478(+) (11)	NA	Q9ZSY8	Auxin-responsive protein IAA27	AT4G29080.1	phytochrome-associated protein 2 	LOC_Os01g13030.2	"OsIAA3 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122570.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.836.1.S1_s_at	A	A1TS	POPTR_0004s22690	POPTR_0004s22690 (11)	scaffold_4:21548407-21549747(-) (11)	NA	NA	NA	AT5G22875.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os04g08330.1	hypothetical protein	Medtr4g076090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.838.1.A1_at	A	A1TS	POPTR_0006s27430	POPTR_0006s27430 (9)	scaffold_6:25340104-25340611(+) (9)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.841.1.A1_at	A	A1TS	POPTR_0009s03050	POPTR_0009s03050 (11)	scaffold_9:3760724-3761783(-) (11)	NA	Q499R4	"YrdC domain-containing protein, mitochondrial"	AT5G60590.2	DHBP synthase RibB-like alpha/beta domain 	LOC_Os03g10450.1	"Sua5/YciO/YrdC/YwlC family protein, putative, expressed"	Medtr4g081630.1	"SUA5/yciO/yrdC, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.846.1.A1_at	A	A1TS	POPTR_0001s40480	POPTR_0001s40480 (10)	scaffold_1:39922309-39922600(-) (10)	NA	P05414	Peroxisomal (S)-2-hydroxy-acid oxidase	AT3G14420.2	Aldolase-type TIM barrel family protein 	LOC_Os03g57220.2	"hydroxyacid oxidase 1, putative, expressed"	Medtr1g086560.1	FMN-dependent alpha-hydroxy acid dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.847.1.A1_at	A	A1TS	POPTR_0005s16450	POPTR_0005s16450 (10)	scaffold_5:13210542-13210937(+) (10)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os10g21940.1	expressed protein	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.848.1.S1_at	A	A1TS	POPTR_0017s02770	POPTR_0017s02770 (11)	scaffold_17:1975125-1975624(+) (11)	NA	P51118	Glutamine synthetase cytosolic isozyme 1	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.848.1.S1_x_at	A	A1TS	POPTR_0017s02770	POPTR_0017s02770 (10)	scaffold_17:1975125-1975659(+) (10)	NA	P51118	Glutamine synthetase cytosolic isozyme 1	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.849.1.S1_at	A	A2TS	POPTR_0014s00670	POPTR_0014s00670 (11)//POPTR_0014s01090 (11)	scaffold_14:624810-625897(+) (11)//scaffold_14:1011388-1012483(-) (11)	NA	Q9LHE5	Mitochondrial import receptor subunit TOM40 homolog 1	AT3G20000.1	translocase of the outer mitochondrial membrane 40 	LOC_Os03g20750.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr4g156410.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
Ptp.85.1.A1_s_at	A	A1TS	POPTR_0001s06590	POPTR_0001s06590 (10)	scaffold_1:5070317-5072601(+) (10)	NA	Q9M7X9	"Thioredoxin-like protein CITRX, chloroplastic"	AT3G06730.1	Thioredoxin z 	LOC_Os08g29110.1	"thioredoxin, putative, expressed"	Medtr3g005810.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.850.1.S1_at	A	A1MS	POPTR_0006s06110	POPTR_0006s06110 (9)	scaffold_6:4347711-4348164(-) (9)	NA	Q3E9A0	"Probable anion transporter 6, chloroplastic"	AT5G20380.1	phosphate transporter 4;5 	LOC_Os09g38410.1	"sialin, putative, expressed"	Medtr8g122090.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.853.1.S1_at	A	A1TS	POPTR_0022s00530	POPTR_0022s00530 (10)	scaffold_22:207944-208352(-) (10)	NA	Q02028	"Stromal 70 kDa heat shock-related protein, chloroplastic"	AT5G49910.1	chloroplast heat shock protein 70-2 	LOC_Os12g14070.1	"DnaK family protein, putative, expressed"	Medtr2g005480.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.858.1.S1_at	A	A1TS	POPTR_0005s08050	POPTR_0005s08050 (11)	scaffold_5:5540311-5541254(-) (11)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
Ptp.858.1.S1_x_at	A	A1TS	POPTR_0005s08050	POPTR_0005s08050 (11)	scaffold_5:5540311-5541254(-) (11)	NA	Q9LW96	Inositol-3-phosphate synthase	AT2G22240.1	myo-inositol-1-phosphate synthase 2 	LOC_Os03g09250.1	"inositol-3-phosphate synthase, putative, expressed"	Medtr3g101280.1	Myo-inositol-1-phosphate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0008654|phospholipid biosynthetic process||GO:0006021|inositol biosynthetic process	GO:0004512|inositol-3-phosphate synthase activity	NA
Ptp.860.1.S1_s_at	A	A1TS	POPTR_0018s02140	POPTR_0018s02140 (10)	scaffold_18:1902104-1902447(-) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr3g137750.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.863.1.S1_s_at	A	A1TS	POPTR_0010s20020	POPTR_0010s20020 (11)	scaffold_10:17769145-17769421(+) (11)	NA	NA	NA	AT2G39950.1	unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). 	LOC_Os07g01060.1	expressed protein	Medtr5g089220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.864.1.S1_s_at	A	A1TS	POPTR_0014s13430	POPTR_0014s13430 (11)	scaffold_14:9884731-9884797(-) (11)	NA	NA	NA	AT4G02920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g05140.2	expressed protein	Medtr1g111640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.864.2.S1_at	A	A1TA	POPTR_0004s03870	POPTR_0004s03870 (10)	scaffold_4:2752083-2752315(+) (10)	NA	P43311	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os01g58100.1	"polyphenol oxidase, putative"	Medtr4g042530.1	Di-copper centre-containing 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.864.3.S1_at	A	A1TS	POPTR_0014s13430	POPTR_0014s13430 (11)	scaffold_14:9884419-9884453(-) (11)	NA	NA	NA	AT4G02920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g05140.2	expressed protein	Medtr1g111640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.864.3.S1_s_at	A	A1TS	POPTR_0014s13430	POPTR_0014s13430 (11)	scaffold_14:9884275-9884316(-) (11)	NA	NA	NA	AT4G02920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g05140.2	expressed protein	Medtr1g111640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.866.1.S1_s_at	A	A1TS	POPTR_0007s01110	POPTR_0007s01110 (11)	scaffold_7:602631-602928(-) (11)	NA	Q9FE67	Ethylene-responsive transcription factor 9	AT5G44210.1	erf domain protein 9 	LOC_Os05g41760.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.868.1.S1_s_at	A	A1TS	POPTR_0008s05950	POPTR_0008s05950 (11)	scaffold_8:3509515-3509778(+) (11)	NA	P49598	Protein phosphatase 2C 37	AT3G11410.1	protein phosphatase 2CA 	LOC_Os01g62760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.869.2.S1_a_at	A	A1TS	POPTR_0015s11070	POPTR_0015s11070 (11)	scaffold_15:11745272-11745694(+) (11)	NA	Q9SMN1	"Uncharacterized protein At3g48680, mitochondrial"	AT3G48680.1	gamma carbonic anhydrase-like 2 	LOC_Os02g30460.1	"uncharacterized protein MJ0304, putative, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
Ptp.872.1.S1_at	A	A1TS	POPTR_0016s14310	POPTR_0016s14310 (11)	scaffold_16:13560216-13560980(-) (11)	NA	Q9ZUC1	"Quinone oxidoreductase-like protein At1g23740, chloroplastic"	AT1G23740.1	"Oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os08g29170.1	"dehydrogenase, putative, expressed"	Medtr6g012770.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.873.2.S1_a_at	A	A1TS	POPTR_0001s41780	POPTR_0001s41780 (11)	scaffold_1:41485686-41485941(-) (11)	NA	P27489	"Chlorophyll a-b binding protein 13, chloroplastic"	AT5G54270.1	light-harvesting chlorophyll B-binding protein 3 	LOC_Os07g37550.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g095410.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.873.2.S1_s_at	A	A2TS	POPTR_0001s41780	POPTR_0011s12680 (11)//POPTR_0001s41780 (11)	scaffold_1:41486009-41486112(-) (11)//scaffold_11:15393400-15393503(-) (11)	NA	P27489	"Chlorophyll a-b binding protein 13, chloroplastic"	AT5G54270.1	light-harvesting chlorophyll B-binding protein 3 	LOC_Os07g37550.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g095410.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.873.2.S1_x_at	A	A1TS	POPTR_0001s41780	POPTR_0001s41780 (11)	scaffold_1:41485617-41485945(-) (11)	NA	P27489	"Chlorophyll a-b binding protein 13, chloroplastic"	AT5G54270.1	light-harvesting chlorophyll B-binding protein 3 	LOC_Os07g37550.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr2g095410.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.874.1.S1_at	A	A1TS	POPTR_0008s13910	POPTR_0008s13910 (11)	scaffold_8:9183839-9184585(+) (11)	NA	Q9SIS3	65-kDa microtubule-associated protein 6	AT2G01910.2	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os09g27700.2	"microtubule associated protein, putative, expressed"	Medtr1g046560.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.875.1.A1_at	A	A1TS	POPTR_0016s11610	POPTR_0016s11610 (11)	scaffold_16:10842160-10842747(+) (11)	NA	P46275	"Fructose-1,6-bisphosphatase, chloroplastic"	AT3G54050.2	high cyclic electron flow 1 	LOC_Os03g16050.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
Ptp.878.1.S1_at	A	A1TS	POPTR_0002s17130	POPTR_0002s17130 (11)	scaffold_2:12922647-12923535(-) (11)	NA	Q9M367	Beclin-1-like protein	AT3G61710.1	AUTOPHAGY 6 	LOC_Os01g48920.1	"beclin-1, putative, expressed"	Medtr3g020350.2	Autophagy protein Apg6 	GO:0006914|autophagy	NA	NA
Ptp.879.1.A1_at	A	A1TS	POPTR_0010s22660	POPTR_0010s22660 (11)	scaffold_10:19485693-19485987(+) (11)	NA	NA	NA	AT4G25030.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g43060.1	expressed protein	Medtr1g121550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.880.1.A1_at	A	A1MS	POPTR_0005s12700	POPTR_0005s12700 (11)	scaffold_5:9444234-9444897(-) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT4G36690.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.880.2.A1_a_at	A	A1TS	POPTR_0005s12700	POPTR_0005s12700 (11)	scaffold_5:9444689-9445446(-) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT4G36690.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.881.1.A1_s_at	A	A1TS	POPTR_0005s11500	POPTR_0005s11500 (11)	scaffold_5:8310747-8311078(-) (11)	NA	P10933	"Ferredoxin--NADP reductase, leaf isozyme, chloroplastic"	AT5G66190.1	ferredoxin-NADP(+)-oxidoreductase 1 	LOC_Os02g01340.2	"ferredoxin--NADP reductase, chloroplast precursor, putative, expressed"	Medtr5g022240.1	Oxidoreductase FAD/NAD(P)-binding 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.885.1.S1_s_at	A	A1TS	POPTR_0005s12510	POPTR_0005s12510 (11)	scaffold_5:9278291-9278524(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.886.1.S1_s_at	A	A1TS	POPTR_0001s37200	POPTR_0001s37200 (11)	scaffold_1:36163685-36163960(+) (11)	NA	NA	NA	AT5G55530.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os03g09840.2	"C2 domain containing protein, putative, expressed"	Medtr3g076960.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.89.1.S1_at	A	A1TS	POPTR_0004s23900	POPTR_0004s23900 (10)	scaffold_4:22535756-22535975(-) (10)	NA	NA	NA	AT1G14450.1	NADH dehydrogenase (ubiquinone)s 	LOC_Os02g35610.1	expressed protein	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity	GO:0005739|mitochondrion
Ptp.890.1.S1_at	A	A1TS	POPTR_0014s09220	POPTR_0014s09220 (11)	scaffold_14:6856739-6857366(-) (11)	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT4G01050.1	thylakoid rhodanese-like 	LOC_Os02g15750.1	expressed protein	AC233680_8.1	"coded for by A. thaliana cDNA T22670; coded for by A. thaliana cDNA T44720; coded for by A. thaliana cDNA T41991; coded for by A. thaliana cDNA AA042110, putative AC233680.1 46729-45900 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.893.1.S1_s_at	A	A1TS	POPTR_0009s02440	POPTR_0009s02440 (11)	scaffold_9:3195549-3196019(-) (11)	NA	NA	NA	AT5G22430.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr2g107610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.894.1.S1_at	A	A1MS	POPTR_0022s00450	POPTR_0022s00450 (9)	scaffold_22:154722-154987(-) (9)	NA	Q8GWR3	KH domain-containing protein At1g09660	AT1G09660.1	RNA-binding KH domain-containing protein 	LOC_Os01g66300.1	"KH domain containing protein, putative, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding	NA
Ptp.894.2.S1_s_at	A	A1TS	POPTR_0022s00450	POPTR_0022s00450 (11)	scaffold_22:151337-151870(-) (11)	NA	Q8GWR3	KH domain-containing protein At1g09660	AT1G09660.1	RNA-binding KH domain-containing protein 	LOC_Os01g66300.1	"KH domain containing protein, putative, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding	NA
Ptp.896.1.A1_at	A	A1TS	POPTR_0014s04540	POPTR_0014s04540 (9)	scaffold_14:3504031-3504265(+) (9)	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	Medtr5g006070.1	BTB/POZ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.897.1.S1_at	A	A1MS	POPTR_0005s02730	POPTR_0005s02730 (11)	scaffold_5:1740320-1740744(-) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT3G50700.1	indeterminate(ID)-domain 2 	LOC_Os02g31890.1	ZOS2-08 - C2H2 zinc finger protein	Medtr7g130150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.9.1.S1_at	A	A1TS	POPTR_0003s06830	POPTR_0003s06830 (11)	scaffold_3:8367255-8367653(-) (11)	NA	O35723	DnaJ homolog subfamily B member 3	AT3G14200.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g54130.2	"heat shock protein DnaJ, putative, expressed"	Medtr8g025850.2	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.90.1.S1_s_at	A	A1TS	POPTR_0001s34770	POPTR_0001s34770 (11)	scaffold_1:33014483-33014829(+) (11)	NA	Q16706	Alpha-mannosidase 2	AT5G14950.1	golgi alpha-mannosidase II 	LOC_Os06g13650.2	"alpha-mannosidase 2, putative, expressed"	Medtr6g009490.1	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0005975|carbohydrate metabolic process	GO:0004559|alpha-mannosidase activity||GO:0008270|zinc ion binding	NA
Ptp.900.1.A1_s_at	A	A1TS	POPTR_0018s11300	POPTR_0018s11300 (11)	scaffold_18:12103519-12104482(-) (11)	NA	Q8YNE3	Translation initiation factor IF-3	AT2G24060.1	Translation initiation factor 3 protein 	LOC_Os02g55120.1	"translation initiation factor IF-3, putative, expressed"	Medtr8g145010.1	Initiation factor 3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.904.1.A1_s_at	A	A1TS	POPTR_0014s01470	POPTR_0014s01470 (11)	scaffold_14:1409110-1409608(-) (11)	NA	Q9FZI8	Lecithin-cholesterol acyltransferase-like 1	AT1G27480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g52010.1	"lecithin cholesterol acyltransferase, putative, expressed"	Medtr2g091450.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
Ptp.908.1.S1_at	A	A1TS	POPTR_0008s07680	POPTR_0008s07680 (9)	scaffold_8:4700513-4700902(-) (9)	NA	Q8W468	Probable E3 ubiquitin-protein ligase ARI8	AT1G65430.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.909.1.A1_s_at	A	A1TS	POPTR_0012s08100	POPTR_0012s08100 (11)	scaffold_12:9149168-9149425(+) (11)	NA	Q8GYT9	E3 ubiquitin-protein ligase SIS3	AT3G47990.1	SUGAR-INSENSITIVE 3 	LOC_Os05g05280.1	"zinc finger family protein, putative, expressed"	Medtr8g125420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.91.1.S1_at	A	A2TS	POPTR_0001s16250	POPTR_0001s16250 (11)//POPTR_0214s00200 (11)	scaffold_1:13070565-13070862(+) (11)//scaffold_214:10252-10549(+) (11)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os07g47830.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.911.1.S1_at	A	A1TS	POPTR_0001s43020	POPTR_0001s43020 (11)	scaffold_1:43077475-43077987(-) (11)	NA	NA	NA	AT3G12920.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os03g46570.1	"protein binding protein, putative, expressed"	Medtr2g088530.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.912.3.A1_a_at	A	A1TS	POPTR_0013s10250	POPTR_0013s10250 (11)	scaffold_13:10266246-10266431(-) (11)	NA	Q949U7	"Peroxiredoxin-2E, chloroplastic"	AT3G52960.1	Thioredoxin superfamily protein 	LOC_Os02g09940.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.913.1.S1_a_at	A	A1TS	POPTR_0004s12380	POPTR_0004s12380 (9)	scaffold_4:11483121-11483444(-) (9)	NA	Q9FLZ8	EID1-like F-box protein 2	AT5G39360.1	EID1-like 2 	LOC_Os07g40710.2	"circadian clock coupling factor-related, putative, expressed"	Medtr6g013970.1	"EDL1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.914.1.A1_at	A	A1TS	POPTR_0014s14510	POPTR_0014s14510 (11)	scaffold_14:10636726-10636959(+) (11)	NA	Q6ZY51	"Phosphoglucan, water dikinase, chloroplastic"	AT5G26570.1	"catalytics;carbohydrate kinases;phosphoglucan, water dikinases "	LOC_Os12g20150.1	"phosphoglucan, water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation||GO:0005975|carbohydrate metabolic process	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.915.1.A1_at	A	A1TS	POPTR_0005s26150	POPTR_0005s26150 (11)	scaffold_5:24227935-24229196(-) (11)	NA	Q6DJ78	BRCA1-A complex subunit BRE	AT5G42470.1	CONTAINS InterPro DOMAIN/s: Brain/reproductive organ-expressed protein (InterPro:IPR010358); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g50170.1	"BRE, putative, expressed"	Medtr2g034610.1	Brain and reproductive organ-expressed 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.916.1.S1_at	A	A1TS	POPTR_0002s14500	POPTR_0002s14500 (11)	scaffold_2:10781716-10782266(-) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44360.1	"scarecrow transcription factor family protein, putative, expressed"	Medtr4g029350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.917.1.A1_at	A	A1TS	POPTR_0007s05210	POPTR_0007s05210 (11)	scaffold_7:3361142-3362724(+) (11)	NA	O33513	Protein CbbY	AT4G39970.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g37940.1	"HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed"	AC235753_15.1	"HAD-superfamily hydrolase subfamily IA, variant 3 AC235753.1 88087-84841 F EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.92.1.S1_at	A	A1TS	POPTR_0012s02870	POPTR_0012s02870 (11)	scaffold_12:2317833-2317967(-) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT3G49430.2	SER/ARG-rich protein 34A 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr3g122850.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.920.1.A1_at	A	A1TS	POPTR_0010s22980	POPTR_0010s22980 (11)	scaffold_10:19674773-19675422(-) (11)	NA	Q88C93	Phosphomannomutase/phosphoglucomutase	AT5G17530.2	phosphoglucosamine mutase family protein 	LOC_Os07g26610.1	"phosphoglucomutase, putative, expressed"	Medtr1g120920.1	Phosphoglucosamine mutase 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
Ptp.921.1.A1_at	A	A1TS	POPTR_0003s19750	POPTR_0003s19750 (10)	scaffold_3:18402524-18403640(-) (10)	NA	Q6NLV4	Flowering time control protein FY	AT5G13480.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g72220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g039570.1	"WD repeat-containing protein 33, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.923.1.A1_at	A	A1TS	POPTR_0002s24750	POPTR_0002s24750 (9)	scaffold_2:22023836-22024087(-) (9)	NA	Q56XP9	Ethylene-responsive transcription factor-like protein At4g13040	AT4G13040.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g29550.2	"AP2 domain containing protein, expressed"	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.924.1.S1_s_at	A	A1TS	POPTR_0002s06390	POPTR_0002s06390 (11)	scaffold_2:4249259-4249480(-) (11)	NA	P29344	"30S ribosomal protein S1, chloroplastic"	AT1G71720.1	Nucleic acid-binding proteins superfamily 	LOC_Os01g40640.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
Ptp.925.1.A1_at	A	A2TS	POPTR_0015s12390	POPTR_0015s12390 (11)//POPTR_0296s00220 (11)	scaffold_15:12654262-12655965(-) (11)//scaffold_296:17173-19246(-) (11)	NA	P54150	"Peptide methionine sulfoxide reductase A4, chloroplastic"	AT4G25130.1	peptide met sulfoxide reductase 4 	LOC_Os10g41400.1	"peptide methionine sulfoxide reductase, putative, expressed"	Medtr5g099990.1	Methionine sulfoxide reductase A 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0055114|oxidation reduction	"GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor"""	NA
Ptp.927.1.A1_at	A	A1TS	POPTR_0014s05680	POPTR_0014s05680 (11)	scaffold_14:4223494-4224900(+) (11)	NA	Q8GXL3	Squamosa promoter-binding-like protein 8	AT1G02065.1	squamosa promoter binding protein-like 8 	LOC_Os06g44860.1	"OsSPL10 - SBP-box gene family member, expressed"	Medtr8g005760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.928.1.A1_s_at	A	A1TS	POPTR_0009s06080	POPTR_0009s06080 (11)	scaffold_9:5990303-5991436(+) (11)	POPTR_0001s26850 (6)	Q0WRX3	Serine carboxypeptidase-like 40	AT3G63470.1	serine carboxypeptidase-like 40 	LOC_Os07g46350.1	"OsSCP40 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr3g040960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.929.2.A1_s_at	A	A1TS	POPTR_0008s20250	POPTR_0008s20250 (11)	scaffold_8:14032063-14032578(+) (11)	NA	NA	NA	AT4G02040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.93.1.S1_at	A	A1TS	POPTR_0006s03390	POPTR_0006s03390 (10)	scaffold_6:2163298-2163720(+) (10)	NA	Q43697	Tubulin beta-5 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.930.1.A1_at	A	A1TS	POPTR_0013s07620	POPTR_0013s07620 (11)	scaffold_13:6449079-6449509(-) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT4G27600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os10g42240.1	"kinase, pfkB family, putative, expressed"	Medtr4g107860.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.932.1.S1_at	A	A1TS	POPTR_0012s05360	POPTR_0012s05360 (9)	scaffold_12:4990973-4991876(-) (11)	NA	Q0WKY2	Carbon catabolite repressor protein 4 homolog 5	AT1G73875.1	DNAse I-like superfamily protein 	LOC_Os01g42490.3	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr4g158510.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.933.1.A1_s_at	A	A1TS	POPTR_0019s04990	POPTR_0019s04990 (11)	scaffold_19:5193356-5193818(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g53670.1	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.937.1.A1_at	A	A1TS	POPTR_0005s26180	POPTR_0005s26180 (9)	scaffold_5:24257010-24257442(+) (9)	NA	NA	NA	AT1G30755.1	Protein of unknown function (DUF668) 	LOC_Os01g65330.1	expressed protein	Medtr3g156480.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.938.1.A1_s_at	A	A1TS	POPTR_0006s23760	POPTR_0006s23760 (11)	scaffold_6:22472535-22474702(-) (11)	NA	Q9FUJ1	Cytokinin dehydrogenase 7	AT5G21482.1	cytokinin oxidase 7 	LOC_Os08g35860.1	"cytokinin dehydrogenase precursor, putative, expressed"	Medtr1g019530.1	"FAD linked oxidase, N-terminal "	GO:0009690|cytokinin metabolic process||GO:0055114|oxidation reduction	GO:0019139|cytokinin dehydrogenase activity||GO:0050660|FAD binding	NA
Ptp.939.1.A1_a_at	A	A1TS	POPTR_0005s15770	POPTR_0005s15770 (10)	scaffold_5:12376710-12378510(+) (10)	NA	Q86IB5	General transcription factor IIH subunit 3	AT1G18340.1	basal transcription factor complex subunit-related 	LOC_Os02g03340.4	"RNA polymerase II transcription factor B subunit 4, putative, expressed"	Medtr3g097520.1	Transcription factor Tfb4 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0016251|general RNA polymerase II transcription factor activity	GO:0000439|core TFIIH complex
Ptp.94.1.S1_at	A	A1TS	POPTR_0003s18130	POPTR_0003s18130 (10)	scaffold_3:17327055-17327549(+) (10)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT1G80870.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	AC233655_16.1	"Serine/threonine protein kinase, active site AC233655.2 115300-112819 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.940.2.A1_a_at	A	A1TS	POPTR_0008s14840	POPTR_0008s14840 (11)	scaffold_8:9861378-9863433(+) (11)	NA	NA	NA	AT1G14410.1	ssDNA-binding transcriptional regulator 	LOC_Os06g05350.1	"whirly transcription factor domain containing protein, expressed"	Medtr5g039580.1	ssDNA-binding transcriptional regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.941.1.S1_s_at	A	A1MS	POPTR_0006s16300	POPTR_0006s16300 (9)	scaffold_6:14222562-14222773(+) (9)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.942.1.S1_s_at	A	A1TS	POPTR_0010s12280	POPTR_0010s12280 (11)	scaffold_10:12320519-12323079(+) (11)	NA	Q55681	ATP-dependent DNA helicase recG	AT2G01440.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os02g48100.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g034620.1	ATP-requiring DNA helicase RecQ 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.943.1.A1_at	A	A1TS	POPTR_0015s09010	POPTR_0015s09010 (10)	scaffold_15:10334095-10334618(-) (10)	NA	NA	NA	AT3G48200.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 210 Blast hits to 148 proteins in 42 species: Archae - 0; Bacteria - 118; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). 	LOC_Os05g51620.2	expressed protein	Medtr3g114240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.95.1.A1_s_at	A	A1TS	POPTR_0010s25900	POPTR_0010s25900 (11)	scaffold_10:21350509-21350758(-) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.951.1.A1_at	A	A1TS	POPTR_0001s07240	POPTR_0001s07240 (11)	scaffold_1:5470259-5470777(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.952.1.S1_at	A	A1TS	POPTR_0015s04580	POPTR_0015s04580 (11)	scaffold_15:4786223-4786352(-) (11)	NA	Q5X4H5	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT3G17970.1	translocon at the outer membrane of chloroplasts 64-III 	LOC_Os03g50010.1	"toc64, putative, expressed"	Medtr4g154900.1	Amidase; 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
Ptp.953.1.A1_x_at	A	A1TS	POPTR_0008s19370	POPTR_0008s19370 (11)	scaffold_8:13322779-13323476(+) (11)	NA	O15488	Glycogenin-2	AT1G60470.1	galactinol synthase 4 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.955.1.A1_s_at	A	A1TS	POPTR_0001s02140	POPTR_0001s02140 (11)	scaffold_1:1587095-1587574(-) (11)	NA	Q9LQM7	Heat stress transcription factor A-1d	AT1G32330.1	heat shock transcription factor A1D 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.956.1.A1_at	A	A1TS	POPTR_0017s03590	POPTR_0017s03590 (11)	scaffold_17:2612084-2612466(+) (11)	POPTR_0018s14960 (7)	Q8RXN0	ABC transporter G family member 11	AT1G17840.1	white-brown complex homolog protein 11 	LOC_Os10g35180.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g104580.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.958.1.S1_at	A	A1TS	POPTR_0006s23660	POPTR_0006s23660 (9)	scaffold_6:22366718-22367867(-) (9)	NA	P54697	Myosin-J heavy chain	AT4G33200.1	"myosin, putative "	LOC_Os06g29350.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
Ptp.96.1.S1_at	A	A1MS	POPTR_0003s15410	POPTR_0003s15410 (11)	scaffold_3:15200540-15201072(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.961.1.A1_at	A	A1TS	POPTR_0016s10710	POPTR_0016s10710 (11)	scaffold_16:9004660-9005247(+) (11)	NA	NA	NA	AT2G36885.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 58 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). 	LOC_Os03g04470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.962.1.S1_s_at	A	A1TS	POPTR_0008s02570	POPTR_0008s02570 (11)	scaffold_8:1263809-1264223(-) (11)	NA	O48928	Cytochrome P450 77A3	AT5G04660.1	"cytochrome P450, family 77, subfamily A, polypeptide 4 "	LOC_Os04g33370.1	"cytochrome P450, putative, expressed"	Medtr1g116900.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.963.1.A1_s_at	A	A1TS	POPTR_0013s12490	POPTR_0013s12490 (11)	scaffold_13:13142449-13142947(-) (11)	NA	Q9SIL7	Fasciclin-like arabinogalactan protein 6	AT2G20520.1	FASCICLIN-like arabinogalactan 6 	LOC_Os01g47780.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.965.1.S1_at	A	A1TS	POPTR_0014s10140	POPTR_0014s10140 (11)	scaffold_14:7607948-7608529(+) (11)	NA	P19684	"33 kDa ribonucleoprotein, chloroplastic"	AT1G01080.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g02390.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g146100.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.966.1.A1_s_at	A	A1MS	POPTR_0014s02950	POPTR_0014s02950 (11)	scaffold_14:2426717-2426887(+) (11)	NA	P40781	Protein CYPRO4	AT4G33400.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g54780.1	"CYPRO4, putative, expressed"	Medtr3g147800.1	AMP-dependent synthetase and ligase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.968.1.A1_at	A	A1MS	POPTR_0018s14060	POPTR_0018s14060 (10)	scaffold_18:14314133-14314394(+) (10)	NA	Q9LVD3	"Pentatricopeptide repeat-containing protein At5g57250, mitochondrial"	AT5G57250.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g15840.1	PPR repeat containing protein	Medtr2g042470.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.969.1.A1_a_at	A	A1TS	POPTR_0011s04150	POPTR_0011s04150 (11)	scaffold_11:4202145-4202298(+) (11)	NA	Q8VYN2	Vesicle-associated protein 4-2	AT4G21450.1	PapD-like superfamily protein 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
Ptp.969.3.A1_at	A	A1TA	POPTR_0006s03390	POPTR_0006s03390 (11)	scaffold_6:2163262-2163335(-) (11)	NA	Q43697	Tubulin beta-5 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.971.1.S1_at	A	A1TS	POPTR_0003s08900	POPTR_0003s08900 (11)	scaffold_3:10216958-10217422(-) (11)	NA	P08451	Ferredoxin-2	AT1G32550.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os03g48040.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr8g102770.1	Ferredoxin 	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.977.1.A1_at	A	A1TS	POPTR_0009s15260	POPTR_0009s15260 (11)	scaffold_9:11848736-11849572(-) (11)	NA	NA	NA	AT5G22790.1	reticulata-related 1 	LOC_Os04g44290.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.978.1.A1_at	A	A1TS	POPTR_0002s26310	POPTR_0002s26310 (11)	scaffold_2:23314695-23314849(+) (11)	NA	NA	NA	AT5G42950.1	GYF domain-containing protein 	LOC_Os07g04530.1	"GYF domain containing protein, putative, expressed"	Medtr7g017760.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.979.1.S1_s_at	A	A1MA	POPTR_0010s09970	POPTR_0010s09970 (11)	scaffold_10:10560707-10561239(+) (11)	NA	Q9LUW0	"Lipoxygenase 5, chloroplastic"	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr1g132610.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.98.1.S1_at	A	A1TS	POPTR_0006s10540	POPTR_0006s10540 (11)	scaffold_6:7895436-7897223(-) (11)	NA	P81748	Macrophage migration inhibitory factor homolog	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os12g01680.1	"macrophage migration inhibitory factor, putative"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.980.1.A1_s_at	A	A1TS	POPTR_0002s22090	POPTR_0002s22090 (9)	scaffold_2:18791548-18792690(-) (9)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr2g030170.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.981.1.S1_at	A	A1TS	POPTR_0009s04570	POPTR_0009s04570 (11)	scaffold_9:4886798-4887341(-) (11)	NA	NA	NA	AT5G58960.1	Plant protein of unknown function (DUF641) 	LOC_Os03g61040.1	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.982.1.A1_s_at	A	A1TS	POPTR_0007s00570	POPTR_0007s00570 (11)	scaffold_7:227672-228142(+) (11)	NA	Q39172	Probable NADP-dependent oxidoreductase P1	AT5G16970.1	alkenal reductase 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.984.1.S1_at	A	A1TS	POPTR_0010s10050	POPTR_0010s10050 (11)	scaffold_10:10642911-10643379(-) (11)	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.987.1.S1_at	A	A1TS	POPTR_0013s12870	POPTR_0013s12870 (11)	scaffold_13:13494712-13495317(-) (11)	NA	P27054	Endochitinase PR4	AT3G54420.1	homolog of carrot EP3-3 chitinase 	LOC_Os02g39330.1	"CHIT1 - Chitinase family protein precursor, expressed"	Medtr2g120640.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
Ptp.99.1.S1_a_at	A	A1TS	POPTR_0010s23850	POPTR_0010s23850 (11)	scaffold_10:20314300-20314382(-) (11)	NA	NA	NA	AT3G52180.1	dual specificity protein phosphatase (DsPTP1) family protein 	LOC_Os03g01750.2	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.99.1.S1_at	A	A1MS	POPTR_0010s23850	POPTR_0010s23850 (9)	scaffold_10:20315826-20315942(-) (9)	NA	NA	NA	AT3G52180.1	dual specificity protein phosphatase (DsPTP1) family protein 	LOC_Os03g01750.2	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.992.1.A1_at	A	A1TA	POPTR_0015s12000	POPTR_0015s12000 (11)	scaffold_15:12442480-12448974(-) (11)	NA	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129920.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.993.1.S1_a_at	A	A1TS	POPTR_0001s34620	POPTR_0001s34620 (11)	scaffold_1:32860091-32860495(+) (11)	NA	Q9SSA5	"Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic"	AT3G01480.1	cyclophilin 38 	LOC_Os08g29370.1	"peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.997.1.A1_at	A	A1TS	POPTR_0010s02700	POPTR_0010s02700 (11)	scaffold_10:3149528-3150552(-) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT5G18810.1	SC35-like splicing factor 28 	LOC_Os03g24890.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g139830.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.100.1.S1_at	A	A1TS	POPTR_0014s04320	POPTR_0014s04320 (9)	scaffold_14:3367437-3368440(-) (9)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.1000.1.A1_at	A	A1TS	POPTR_0017s07570	POPTR_0017s07570 (11)	scaffold_17:5891142-5891419(-) (11)	NA	Q8W490	Serine/threonine-protein kinase PEPKR2	AT1G12680.1	phosphoenolpyruvate carboxylase-related kinase 2 	LOC_Os09g29170.2	"CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g144630.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.100024.1.A1_at	A	A1MS	POPTR_0018s14670	POPTR_0018s14670 (9)	scaffold_18:14799563-14799724(-) (9)	NA	Q9BYJ9	YTH domain family protein 1	AT5G58190.1	evolutionarily conserved C-terminal region 10 	LOC_Os08g44200.1	"ECT5, putative, expressed"	Medtr4g163280.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100032.1.A1_at	A	A1TS	POPTR_0458s00200	POPTR_0458s00200 (9)	scaffold_458:3706-4133(-) (9)	NA	Q9FG65	Cytochrome P450 81D1	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55260.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.100048.1.A1_at	A	A1TS	POPTR_0001s30980	POPTR_0001s30980 (11)	scaffold_1:29396439-29396937(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100051.1.A1_at	A	A1TS	POPTR_0010s05280	POPTR_0010s05280 (9)	scaffold_10:6746750-6747211(+) (9)	NA	Q9LDE3	F-box/kelch-repeat protein At1g23390	AT1G23390.1	Kelch repeat-containing F-box family protein 	LOC_Os01g50840.1	expressed protein	Medtr5g046610.1	Kelch repeat type 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10008.1.A1_at	A	A1TS	POPTR_0002s15360	POPTR_0002s15360 (11)	scaffold_2:11501256-11501709(-) (11)	NA	O64647	Transcription factor TCP9	AT2G45680.1	TCP family transcription factor  	LOC_Os08g43160.1	"TCP family transcription factor, putative, expressed"	Medtr1g129720.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100080.1.A1_at	A	A1TS	POPTR_0007s12260	POPTR_0007s12260 (11)	scaffold_7:12581435-12582417(+) (11)	NA	Q12010	Uncharacterized membrane protein YOL092W	AT4G36850.1	PQ-loop repeat family protein / transmembrane family protein 	LOC_Os01g16170.5	"PQ loop repeat domain containing protein, expressed"	Medtr5g019090.1	Cystinosin/ERS1p repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100081.1.A1_at	A	A1TS	POPTR_0006s12700	POPTR_0006s12700 (9)	scaffold_6:9858758-9858998(+) (9)	NA	Q7ZYA2	Transcription initiation factor TFIID subunit 8	AT4G34340.1	TBP-associated factor 8 	LOC_Os12g38620.3	"bromodomain associated family protein, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100112.1.A1_at	A	A1TS	POPTR_0010s05910	POPTR_0010s05910 (9)	scaffold_10:7342120-7342475(+) (9)	NA	Q9LIP4	Cytochrome P450 71B36	AT3G26320.1	"cytochrome P450, family 71, subfamily B, polypeptide 36 "	LOC_Os03g63310.1	"cytochrome P450 71E1, putative, expressed"	Medtr1g028100.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.100128.1.A1_at	A	A2TS	POPTR_0019s06120	POPTR_0019s06120 (11)//POPTR_0013s06750 (9)	scaffold_13:5464780-5468931(-) (11)//scaffold_19:6662542-6667032(+) (11)	NA	Q946J8	Chromo domain-containing protein LHP1	AT5G17690.1	like heterochromatin protein (LHP1) 	LOC_Os10g17770.1	"chromo domain-containing protein LHP1, putative, expressed"	Medtr3g163840.1	Chromo; Chromo shadow 	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.100134.1.A1_s_at	A	A1MS	POPTR_0002s08940	POPTR_0002s08940 (11)	scaffold_2:6318856-6318974(-) (11)	NA	NA	NA	AT4G08460.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.1	expressed protein	Medtr3g098400.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10018.1.S1_a_at	A	A1TS	POPTR_0005s27630	POPTR_0005s27630 (11)	scaffold_5:25201169-25201475(+) (11)	NA	Q9LM71	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplastic"	AT1G20810.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os02g02550.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr3g160000.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.100195.1.S1_a_at	A	A2TS	POPTR_0001s25630	POPTR_0001s25630 (11)//POPTR_0009s04780 (9)	scaffold_1:24700802-24701770(+) (11)//scaffold_9:5047435-5048449(+) (9)	NA	Q04VF1	Phosphomethylpyrimidine synthase	AT2G29630.3	thiaminC 	LOC_Os03g47610.8	"thiamine biosynthesis protein thiC, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.100195.2.S1_s_at	A	A2TS	POPTR_0001s25630	POPTR_0001s25630 (11)//POPTR_0009s04780 (10)	scaffold_1:24701885-24702403(+) (11)//scaffold_9:5048619-5049082(+) (10)	NA	Q04VF1	Phosphomethylpyrimidine synthase	AT2G29630.3	thiaminC 	LOC_Os03g47610.8	"thiamine biosynthesis protein thiC, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.1002.2.A1_a_at	A	A1TS	POPTR_0008s08590	POPTR_0008s08590 (11)	scaffold_8:5322910-5324418(-) (11)	NA	NA	NA	AT2G02960.3	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os08g33860.2	"zinc finger, C3HC4 type, putative, expressed"	Medtr5g044040.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10021.1.A1_at	A	A1TS	POPTR_0003s11100	POPTR_0003s11100 (11)	scaffold_3:11965601-11967429(-) (11)	NA	NA	NA	AT4G22550.1	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os02g44290.1	"phosphatase, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.100235.1.S1_s_at	A	A2TS	POPTR_0002s08750	POPTR_0002s08750 (11)//POPTR_0005s16020 (11)	scaffold_2:6144796-6145337(-) (11)//scaffold_5:12674442-12674923(-) (11)	NA	Q9FEL6	Auxin transporter-like protein 3	AT1G77690.1	like AUX1 3 	LOC_Os03g14080.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g097960.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10026.1.S1_at	A	A1TS	POPTR_0016s06360	POPTR_0016s06360 (9)	scaffold_16:4265056-4266722(-) (9)	NA	Q8WVE0	N(6)-adenine-specific DNA methyltransferase 2	AT3G58470.1	nucleic acid binding;methyltransferases 	LOC_Os03g53890.1	"N2, N2-dimethylguanosine tRNA methyltransferase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100295.1.S1_at	A	A1TS	POPTR_0002s09920	POPTR_0002s09920 (11)	scaffold_2:7109819-7110146(+) (11)	NA	Q28717	Serine/threonine-protein phosphatase 2A activator	AT4G08960.1	phosphotyrosyl phosphatase activator (PTPA) family protein 	LOC_Os06g11640.1	"serine/threonine-protein phosphatase 2A activator 2, putative, expressed"	Medtr4g069930.1	"Phosphotyrosyl phosphatase activator, PTPA "	NA	GO:0019211|phosphatase activator activity	NA
PtpAffx.1003.1.A1_at	A	A1TS	POPTR_0001s46440	POPTR_0001s46440 (11)	scaffold_1:46823356-46824099(+) (11)	NA	A4FV84	mRNA turnover protein 4 homolog	AT1G25260.1	Ribosomal protein L10 family protein 	LOC_Os11g01420.1	"ribosomal protein L10, putative, expressed"	Medtr2g007880.1	Ribosomal protein L10 	GO:0042254|ribosome biogenesis	NA	GO:0005622|intracellular
PtpAffx.10032.1.S1_a_at	A	A1TS	POPTR_0005s01840	POPTR_0005s01840 (11)	scaffold_5:1227631-1227894(+) (11)	POPTR_0013s01080 (6)	P31414	Pyrophosphate-energized vacuolar membrane proton pump 1	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.100369.1.A1_at	A	A1TS	POPTR_0001s25950	POPTR_0001s25950 (11)	scaffold_1:25033005-25033548(+) (11)	NA	P42730	Heat shock protein 101	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100443.1.S1_at	A	A1TS	POPTR_0019s10280	POPTR_0019s10280 (11)	scaffold_19:11861725-11862390(-) (11)	NA	NA	NA	AT1G71500.1	Rieske (2Fe-2S) domain-containing protein 	LOC_Os11g13850.3	"rieske domain containing protein, expressed"	Medtr5g008800.1	Rieske [2Fe-2S] region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100451.1.S1_at	A	A1TS	POPTR_0012s10590	POPTR_0012s10590 (11)	scaffold_12:11317517-11317725(-) (11)	NA	Q9FI61	Ubiquitin-conjugating enzyme E2 27	AT5G50870.1	ubiquitin-conjugating enzyme 27 	LOC_Os01g70140.1	"ubiquitin-conjugating enzyme E2-22 kDa, putative, expressed"	Medtr3g151060.1	"Ubiquitin-associated; Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.10046.2.S1_at	A	A1TS	POPTR_0008s14830	POPTR_0008s14830 (9)	scaffold_8:9851430-9853314(-) (9)	NA	NA	NA	AT1G27000.1	Protein of unknown function (DUF1664) 	LOC_Os05g08980.3	expressed protein	Medtr5g039570.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100467.1.S1_at	A	A1TS	POPTR_0010s15100	POPTR_0010s15100 (11)	scaffold_10:14462680-14464458(-) (11)	NA	Q5PNU3	AMSH-like ubiquitin thiolesterase 3	AT4G16144.1	associated molecule with the SH3 domain of STAM 3 	LOC_Os01g31470.1	"mov34/MPN/PAD-1 family protein, expressed"	Medtr8g138240.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100482.1.A1_s_at	A	A1TS	POPTR_0003s05170	POPTR_0003s05170 (11)	scaffold_3:6379137-6379182(+) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os06g06780.1	"harpin-induced protein, putative, expressed"	Medtr2g122860.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.10049.1.S1_at	A	A1TS	POPTR_0013s06930	POPTR_0013s06930 (11)	scaffold_13:5618431-5619701(-) (11)	NA	NA	NA	AT3G54680.1	proteophosphoglycan-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100515.1.S1_at	A	A1TS	POPTR_0009s12840	POPTR_0009s12840 (11)	scaffold_9:10405647-10406330(+) (11)	NA	Q9T0J6	tRNA-dihydrouridine synthase 3-like	AT4G38890.1	FMN-linked oxidoreductases superfamily protein 	LOC_Os04g02730.1	"tRNA-dihydrouridine synthase 3-like, putative, expressed"	Medtr3g163110.1	"Zinc finger, CCCH-type; Dihydrouridine synthase, DuS "	GO:0044260|cellular macromolecule metabolic process||GO:0008033|tRNA processing||GO:0055114|oxidation reduction	GO:0003676|nucleic acid binding||GO:0050660|FAD binding||GO:0017150|tRNA dihydrouridine synthase activity||GO:0008270|zinc ion binding	NA
PtpAffx.100540.1.S1_at	A	A1TS	POPTR_0009s05170	POPTR_0009s05170 (11)	scaffold_9:5328073-5329048(+) (11)	NA	Q9STZ2	SelT-like protein	AT3G47300.1	SELT-like protein precursor 	LOC_Os01g61580.1	"selT-like protein precursor, putative, expressed"	Medtr4g013030.1	SelT/selW/selH selenoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100618.1.S1_at	A	A1TS	POPTR_0007s09440	POPTR_0007s09440 (10)	scaffold_7:8853454-8855039(+) (10)	NA	P32361	Serine/threonine-protein kinase/endoribonuclease IRE1	AT2G17520.1	Endoribonuclease/protein kinase IRE1-like 	LOC_Os07g28820.1	"ribonuclease 2-5A family protein, expressed"	Medtr5g024470.1	Protein kinase; PUG 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006397|mRNA processing	"GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0016891|""endoribonuclease activity, producing 5'-phosphomonoesters"""	NA
PtpAffx.100620.1.S1_at	A	A1TS	POPTR_0005s26910	POPTR_0005s26910 (9)	scaffold_5:24760428-24761493(-) (10)	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G42220.1	Ubiquitin-like superfamily protein 	LOC_Os07g31540.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.2	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100628.1.S1_s_at	A	A1TS	POPTR_0005s26500	POPTR_0005s26500 (11)	scaffold_5:24498810-24499394(-) (11)	NA	Q9P6K0	Uncharacterized HTH La-type RNA-binding protein C1527.03	AT4G35890.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g06070.1	"la domain containing protein, putative, expressed"	Medtr1g031850.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100638.1.A1_at	A	A1TS	POPTR_0006s14820	POPTR_0006s14820 (10)	scaffold_6:12252370-12253283(+) (10)	NA	Q09464	Uncharacterized protein C16C10.8	AT2G19385.1	zinc ion binding 	LOC_Os01g40110.1	"ZOS1-11 - C2H2 zinc finger protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100692.1.S1_at	A	A1TS	POPTR_0007s07880	POPTR_0007s07880 (11)	scaffold_7:6333586-6333714(-) (11)	NA	NA	NA	AT3G19780.1	"LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF179 (InterPro:IPR003774), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF179) (TAIR:AT1G33780.1); Has 74 Blast hits to 72 proteins in 32 species: Archae - 0; Bacteria - 24; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os10g34390.1	expressed protein	Medtr4g101420.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10070.1.A1_at	A	A1TS	POPTR_0013s02670	POPTR_0013s02670 (9)	scaffold_13:1585365-1585453(-) (9)	NA	Q8RXX9	E3 ubiquitin-protein ligase ATL6	AT3G05200.1	RING/U-box superfamily protein 	LOC_Os09g29310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100713.1.S1_a_at	A	A1TS	POPTR_0002s04450	POPTR_0002s04450 (11)	scaffold_2:2793991-2795215(-) (11)//scaffold_5:22732692-22734869(+) (11)	NA	Q9SMU7	Signal recognition particle 9 kDa protein	AT3G49100.1	"Signal recognition particle, SRP9/SRP14 subunit "	LOC_Os06g14550.1	"signal recognition particle 9 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane||GO:0045900|negative regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0005515|protein binding||GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
PtpAffx.100713.2.S1_at	A	A1TS	POPTR_0002s04450	POPTR_0002s04450 (11)	scaffold_2:2793542-2795725(-) (11)	NA	Q9SMU7	Signal recognition particle 9 kDa protein	AT3G49100.1	"Signal recognition particle, SRP9/SRP14 subunit "	LOC_Os06g14550.1	"signal recognition particle 9 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane||GO:0045900|negative regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0005515|protein binding||GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
PtpAffx.100720.1.S1_at	A	A1TS	POPTR_0001s10980	POPTR_0001s10980 (11)	scaffold_1:8515737-8516239(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01960.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100744.1.S1_s_at	A	A1TS	POPTR_0004s00560	POPTR_0004s00560 (11)	scaffold_4:212559-212979(+) (11)	NA	NA	NA	AT4G22190.1	unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). 	LOC_Os11g30430.1	expressed protein	Medtr2g029070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100746.1.S1_at	A	A1TS	POPTR_0010s00520	POPTR_0010s00520 (9)	scaffold_10:269310-269820(-) (9)	NA	NA	NA	AT3G06960.1	pigment defective 320 	LOC_Os01g14820.1	expressed protein	Medtr4g089750.1	"Fgenesh protein 89, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100749.1.S1_at	A	A1TS	POPTR_0019s14460	POPTR_0019s14460 (11)	scaffold_19:15242546-15243061(+) (11)	NA	Q8S8P5	Probable WRKY transcription factor 33	AT2G38470.1	WRKY DNA-binding protein 33 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g082420.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.10075.1.S1_at	A	A1TS	POPTR_0001s41460	POPTR_0001s41460 (10)	scaffold_1:41084162-41084660(+) (10)	NA	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.10075.2.S1_at	A	A1TS	POPTR_0001s41460	POPTR_0001s41460 (9)	scaffold_1:41083132-41083838(+) (10)//scaffold_1659:3032-3622(+) (9)	POPTR_1659s00200 (8)	Q93VY3	NAC domain-containing protein 72	AT4G27410.2	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.100773.1.S1_at	A	A1MS	POPTR_0003s11770	POPTR_0003s11770 (9)	scaffold_3:12544003-12544882(+) (10)	NA	NA	NA	AT4G22860.1	Cell cycle regulated microtubule associated protein 	LOC_Os06g03980.1	expressed protein	Medtr5g011520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100788.1.S1_a_at	A	A1TS	POPTR_0016s00700	POPTR_0016s00700 (11)	scaffold_16:246652-248111(-) (11)	NA	Q8LFN9	Probable ADP-ribosylation factor GTPase-activating protein AGD13	AT5G47710.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os09g07800.1	expressed protein	Medtr2g032750.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1008.1.S1_s_at	A	A1TS	POPTR_0001s09060	POPTR_0001s09060 (11)	scaffold_1:6932866-6933851(-) (11)	NA	Q9C8S9	Probable DEAD-box ATP-dependent RNA helicase 48	AT1G63250.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os02g57980.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.100809.1.S1_at	A	A1TS	POPTR_0010s12010	POPTR_0010s12010 (11)	scaffold_10:12119288-12119751(-) (11)	NA	NA	NA	AT1G70750.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10083.2.S1_at	A	A1TA	POPTR_0017s09870	POPTR_0017s09870 (9)	scaffold_17:8590035-8590430(-) (9)	NA	Q9LI89	F-box/kelch-repeat protein At3g27150	AT3G27150.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g52830.2	"OsFBK15 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g110510.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100845.1.S1_at	A	A1TS	POPTR_0004s05250	POPTR_0004s05250 (11)	scaffold_4:3996703-3996961(+) (11)	NA	Q8GYB1	"Nudix hydrolase 15, mitochondrial"	AT1G28960.2	nudix hydrolase homolog 15 	LOC_Os08g28860.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr2g018810.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.10087.1.A1_at	A	A1TS	POPTR_0006s08350	POPTR_0006s08350 (11)	scaffold_6:6074131-6074782(-) (11)	NA	Q9SJM7	Uridine nucleosidase 1	AT2G36310.1	uridine-ribohydrolase 1 	LOC_Os08g44370.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr7g127040.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100886.1.S1_s_at	A	A2TS	POPTR_0098s00220	POPTR_0098s00290 (11)//POPTR_0098s00220 (11)	scaffold_98:6465-7250(-) (11)//scaffold_98:42961-44213(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22380.1	UDP-glucosyl transferase 85A3 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100887.1.S1_at	A	A1TS	POPTR_0011s00840	POPTR_0011s00840 (9)	scaffold_11:425534-427642(-) (10)	NA	Q9H223	EH domain-containing protein 4	AT4G05520.1	EPS15 homology domain 2 	LOC_Os06g47330.1	"dynamin family protein, putative, expressed"	Medtr2g029240.1	"EPS15 homology (EH); Dynamin; Actin-binding, actinin-type "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10090.1.S1_at	A	A1TS	POPTR_0010s20190	POPTR_0010s20190 (11)	scaffold_10:17876119-17876664(-) (11)	NA	NA	NA	AT5G01090.1	Concanavalin A-like lectin family protein 	LOC_Os06g14260.1	"lectin-like receptor kinase, putative"	Medtr3g092880.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005488|binding	NA
PtpAffx.100900.1.S1_at	A	A1TS	POPTR_0001s40870	POPTR_0001s40870 (9)	scaffold_1:40464248-40465767(-) (9)	NA	Q9S758	Squamosa promoter-binding-like protein 5	AT3G15270.1	squamosa promoter binding protein-like 5 	LOC_Os07g32170.1	"OsSPL13 - SBP-box gene family member, expressed"	Medtr2g017680.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.100957.1.S1_s_at	A	A2TS	POPTR_0004s04780	POPTR_0004s04780 (11)//POPTR_0335s00200 (11)	scaffold_335:15573-16223(+) (11)//scaffold_4:3545898-3546551(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g017900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100964.1.A1_s_at	A	A1TS	POPTR_0007s14880	POPTR_0007s14880 (11)	scaffold_7:14583135-14584178(+) (11)	NA	NA	NA	AT5G67610.1	Uncharacterized conserved protein (DUF2215) 	LOC_Os03g31570.1	"proline-rich family protein, putative, expressed"	Medtr5g015430.1	"protein F1K23.6 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100968.1.S1_at	A	A1TS	POPTR_0003s05520	POPTR_0003s05520 (10)	scaffold_3:6823689-6824249(-) (10)	NA	NA	NA	AT1G80000.2	CASC3/Barentsz eIF4AIII binding 	LOC_Os01g41190.2	"glycine-rich protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100975.1.S1_s_at	A	A1TS	POPTR_0015s03960	POPTR_0015s03960 (11)	scaffold_15:3858768-3862027(-) (11)	NA	NA	NA	AT3G18240.2	"Ribosomal protein S24/S35, mitochondrial "	LOC_Os08g40230.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.100994.2.S1_a_at	A	A1TS	POPTR_0006s21520	POPTR_0006s21520 (11)	scaffold_6:20569967-20572784(-) (11)	NA	Q8IWL3	"Iron-sulfur cluster co-chaperone protein HscB, mitochondrial"	AT5G06410.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os12g27070.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding	NA
PtpAffx.1010.1.S1_at	A	A1TS	POPTR_0017s04650	POPTR_0017s04650 (9)	scaffold_17:3548135-3548915(-) (9)	NA	Q5ZLK1	DDB1- and CUL4-associated factor 13	AT4G28450.1	nucleotide binding;protein binding 	LOC_Os01g13730.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g028840.1	Sof1-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10101.1.A1_at	A	A1TS	POPTR_0010s21480	POPTR_0010s21480 (11)	scaffold_10:18738359-18738942(+) (11)	NA	NA	NA	AT2G39570.1	ACT domain-containing protein 	LOC_Os05g02220.3	"ACT domain containing protein, expressed"	Medtr7g025660.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.101017.1.A1_at	A	A1TS	POPTR_0011s03490	POPTR_0011s03490 (11)	scaffold_11:3589589-3589702(+) (11)	NA	Q84UV0	"Linalool synthase, chloroplastic"	AT1G61680.1	terpene synthase 14 	LOC_Os02g02930.1	"terpene synthase, putative, expressed"	Medtr3g068760.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.101017.1.A1_s_at	A	A1TS	POPTR_0011s03490	POPTR_0011s03490 (11)	scaffold_11:3589435-3589603(+) (11)	NA	Q84UV0	"Linalool synthase, chloroplastic"	AT1G61680.1	terpene synthase 14 	LOC_Os02g02930.1	"terpene synthase, putative, expressed"	Medtr3g068760.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.10102.1.A1_at	A	A1TS	POPTR_0002s19230	POPTR_0002s19230 (11)	scaffold_2:15155541-15155973(-) (11)	NA	O15488	Glycogenin-2	AT2G47180.1	galactinol synthase 1 	LOC_Os03g20120.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g133390.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.10103.3.S1_at	A	A1MS	POPTR_0014s10380	POPTR_0014s10380 (10)	scaffold_14:7774332-7774741(-) (10)	NA	O81916	Uncharacterized calcium-binding protein At1g02270	AT5G54130.2	Calcium-binding endonuclease/exonuclease/phosphatase family 	LOC_Os10g13550.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC233657_18.1	Calcium-binding EF-hand; Endonuclease/exonuclease/phosphatase AC233657.1 101749-97143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101048.1.A1_at	A	A1TS	POPTR_0010s13580	POPTR_0010s13580 (9)	scaffold_10:13388086-13388536(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101053.1.A1_at	A	A1TS	POPTR_0009s04180	POPTR_0009s04180 (11)	scaffold_9:4678142-4678605(+) (11)	NA	NA	NA	AT3G46780.1	plastid transcriptionally active 16 	LOC_Os05g22614.1	"PTAC16, putative, expressed"	Medtr4g084290.1	"PTAC16 ; binding {Arab, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10106.1.S1_at	A	A1TS	POPTR_0003s19190	POPTR_0003s19190 (11)	scaffold_3:17986367-17986903(+) (11)//scaffold_3:17997300-17997906(+) (11)	POPTR_0003s19180 (8)	Q940G6	Probable gibberellin receptor GID1L3	AT5G16080.1	carboxyesterase 17 	LOC_Os05g33940.1	"alpha/beta hydrolase fold, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.10107.1.A1_s_at	A	A1TS	POPTR_0008s06960	POPTR_0008s06960 (11)	scaffold_8:4205055-4205542(-) (11)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.10107.2.A1_at	A	A1MS	POPTR_0008s06960	POPTR_0008s06960 (11)	scaffold_8:4205923-4206470(-) (11)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.101087.1.S1_a_at	A	A1TS	POPTR_0019s12320	POPTR_0019s12320 (11)	scaffold_19:13379240-13379399(-) (11)//scaffold_5:4701317-4701476(-) (11)	NA	O49675	"Probable carotenoid cleavage dioxygenase 4, chloroplastic"	AT4G19170.1	nine-cis-epoxycarotenoid dioxygenase 4 	LOC_Os02g47510.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101087.1.S1_at	A	A1TS	POPTR_0019s12320	POPTR_0019s12320 (10)	scaffold_19:13379047-13379502(-) (10)	NA	O49675	"Probable carotenoid cleavage dioxygenase 4, chloroplastic"	AT4G19170.1	nine-cis-epoxycarotenoid dioxygenase 4 	LOC_Os02g47510.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101087.2.S1_at	A	A1TA	POPTR_0005s07010	POPTR_0005s07010 (11)	scaffold_5:4701003-4701317(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101103.1.A1_at	A	A1TS	POPTR_0005s05080	POPTR_0005s05080 (11)	scaffold_5:3378844-3379102(-) (11)	NA	P73068	Rubredoxin	AT1G54500.1	Rubredoxin-like superfamily protein 	LOC_Os08g23410.1	"rubredoxin family protein, putative, expressed"	Medtr7g140460.1	Rubredoxin 	NA	GO:0046872|metal ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.10111.1.S1_at	A	A1TS	POPTR_0015s11320	POPTR_0015s11320 (11)	scaffold_15:11919919-11920459(+) (11)	NA	Q42522	"Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic"	AT3G48730.1	"glutamate-1-semialdehyde 2,1-aminomutase 2 "	LOC_Os08g41990.1	"aminotransferase, putative, expressed"	Medtr3g163620.1	"Glutamate-1-semialdehyde-2,1-aminomutase; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.101117.1.A1_at	A	A1TS	POPTR_0006s23810	POPTR_0006s23810 (11)	scaffold_6:22535111-22535668(-) (11)	NA	Q9FJA2	Transcription factor TT2	AT5G35550.1	Duplicated homeodomain-like superfamily protein 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101137.1.A1_at	A	A1TS	POPTR_0002s20100	POPTR_0002s20100 (11)	scaffold_2:16032112-16032644(+) (11)	NA	NA	NA	AT2G47485.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g132640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101145.1.A1_at	A	A1TS	POPTR_0001s17280	POPTR_0001s17280 (10)	scaffold_1:14100197-14100690(-) (11)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.2	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.101182.1.A1_at	A	A1TS	POPTR_0018s03670	POPTR_0018s03670 (11)	scaffold_18:3128859-3129385(-) (11)	NA	O59811	Zinc finger protein C550.15c	AT4G31420.1	Zinc finger protein 622 	LOC_Os06g47840.1	"ZOS6-08 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.101189.1.A1_at	A	A1TS	POPTR_0015s00600	POPTR_0015s00600 (9)	scaffold_15:361789-361964(-) (9)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10120.3.S1_at	A	A1MS	POPTR_0012s01620	POPTR_0012s01620 (11)	scaffold_12:1237286-1237453(+) (11)	NA	Q39219	"Alternative oxidase 1a, mitochondrial"	AT3G22370.1	alternative oxidase 1A 	LOC_Os04g51150.1	"transposon protein, putative, unclassified, expressed"	Medtr5g026770.1	Alternative oxidase 	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
PtpAffx.101216.1.A1_at	A	A1TS	POPTR_0006s04950	POPTR_0006s04950 (11)	scaffold_6:3454743-3455116(+) (11)	NA	NA	NA	AT2G41770.1	Protein of unknown function (DUF288) 	LOC_Os05g32500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101219.1.A1_a_at	A	A1TS	POPTR_0010s23520	POPTR_0010s23520 (11)	scaffold_10:20075612-20076099(+) (11)	NA	NA	NA	AT2G36840.1	ACT-like superfamily protein 	LOC_Os09g39740.1	"ACT domain containing protein, expressed"	Medtr7g124000.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.101228.1.A1_at	A	A2TS	POPTR_0015s05660	POPTR_0015s05660 (11)//POPTR_0015s05670 (11)	scaffold_15:5993317-5993655(+) (11)//scaffold_15:6003824-6004162(+) (11)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101268.1.A1_at	A	A1TS	POPTR_0007s06000	POPTR_0007s06000 (11)	scaffold_7:4138496-4139054(-) (11)	NA	NA	NA	AT4G39700.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g26650.2	"heavy metal-associated domain containing protein, expressed"	Medtr4g140470.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.101270.1.S1_at	A	A1TS	POPTR_0005s27840	POPTR_0005s27840 (11)	scaffold_5:25318883-25319354(+) (11)	NA	NA	NA	AT2G33585.1	unknown protein; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g40190.1	expressed protein	CU179634_6.1	hypothetical protein CU179634.6 21470-21926 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101285.1.A1_at	A	A1TS	POPTR_0015s13610	POPTR_0015s13610 (10)	scaffold_15:13485024-13485542(+) (10)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT5G52140.1	RING/U-box superfamily protein 	LOC_Os03g07790.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g087360.1	"Zinc finger, RING-type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101307.1.A1_at	A	A1TS	POPTR_0005s03520	POPTR_0005s03520 (11)	scaffold_5:2363296-2364284(-) (11)	NA	Q6NYY9	Transmembrane protein 49	AT4G14950.1	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101313.1.A1_at	A	A1TS	POPTR_0002s20250	POPTR_0002s20250 (9)	scaffold_2:16207110-16207606(+) (9)	NA	O46072	Probable ATP-dependent RNA helicase kurz	AT1G33390.1	RNA helicase family protein 	LOC_Os02g50370.1	"helicase domain-containing protein, putative, expressed"	Medtr4g024790.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.101335.1.A1_at	A	A1TS	POPTR_0003s16200	POPTR_0003s16200 (11)	scaffold_3:15795625-15796400(-) (11)	NA	NA	NA	AT3G23255.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os10g32860.2	expressed protein	Medtr4g107920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101338.1.A1_at	A	A1TS	POPTR_0010s20880	POPTR_0010s20880 (11)	scaffold_10:18314185-18314596(+) (11)	NA	Q9CAY3	Glycerol-3-phosphate acyltransferase 5	AT3G11430.1	glycerol-3-phosphate acyltransferase 5 	LOC_Os05g38350.1	"glycerol-3-phosphate acyltransferase 8, putative, expressed"	Medtr5g087710.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.101360.1.A1_at	A	A1TS	POPTR_0013s08380	POPTR_0013s08380 (11)	scaffold_13:7462700-7463073(+) (11)	NA	Q9C5T3	Probable WRKY transcription factor 26	AT5G07100.1	WRKY DNA-binding protein 26 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.101361.1.S1_at	A	A1TS	POPTR_0004s12830	POPTR_0004s12830 (10)	scaffold_4:12164612-12165031(+) (10)	NA	NA	NA	AT5G39785.1	Protein of unknown function (DUF1666) 	LOC_Os09g24700.1	expressed protein	Medtr7g009560.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10139.1.A1_at	A	A1TS	POPTR_0014s14400	POPTR_0014s14400 (11)	scaffold_14:10562354-10563421(-) (11)	NA	NA	NA	AT1G10830.1	15-cis-zeta-carotene isomerase 	LOC_Os12g21710.1	"nnrU, putative, expressed"	Medtr4g147320.1	NnrU 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101393.1.A1_at	A	A1TS	POPTR_0009s14140	POPTR_0009s14140 (11)	scaffold_9:11147377-11147590(-) (11)	NA	Q9SDA8	F-box/LRR-repeat protein 10	AT2G17020.1	F-box/RNI-like superfamily protein 	LOC_Os03g04270.1	"OsFBL10 - F-box domain and LRR containing protein, expressed"	Medtr1g143330.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.101397.1.A1_at	A	A1TS	POPTR_0013s06540	POPTR_0013s06540 (10)	scaffold_13:5141191-5141679(-) (10)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT3G03620.1	MATE efflux family protein 	LOC_Os12g03260.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.1014.1.A1_at	A	A1TS	POPTR_0004s09010	POPTR_0004s09010 (11)	scaffold_4:7568922-7569270(+) (11)	NA	Q9FIZ7	5-oxoprolinase	AT5G37830.1	oxoprolinase 1 	LOC_Os01g73514.1	"5-oxoprolinase, putative, expressed"	Medtr4g121000.1	"Hydantoinase/oxoprolinase; Hydantoinase B/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.101405.1.A1_at	A	A1TS	POPTR_0008s09550	POPTR_0008s09550 (11)	scaffold_8:5911177-5911306(+) (11)	NA	Q9LMX4	Probable inactive purple acid phosphatase 1	AT1G13750.1	Purple acid phosphatases superfamily protein 	LOC_Os12g38760.2	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g073720.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.101413.1.S1_a_at	A	A1TS	POPTR_0003s13830	POPTR_0003s13830 (11)	scaffold_3:14094738-14095001(+) (11)	NA	NA	NA	AT1G64355.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3593 (InterPro:IPR021995); Has 301 Blast hits to 301 proteins in 96 species: Archae - 0; Bacteria - 143; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). 	LOC_Os05g49650.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101418.1.A1_at	A	A1TS	POPTR_0004s10520	POPTR_0004s10520 (9)	scaffold_4:9058562-9058956(-) (9)	NA	NA	NA	AT5G15900.1	TRICHOME BIREFRINGENCE-LIKE 19 	LOC_Os01g46400.1	expressed protein	Medtr5g036370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101423.1.A1_at	A	A1TS	POPTR_0001s29460	POPTR_0001s29460 (11)	scaffold_1:28133535-28133833(+) (11)	NA	P93732	Proline iminopeptidase	AT2G14260.1	proline iminopeptidase 	LOC_Os05g43830.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr2g010520.1	"Peptidase S33, prolyl aminopeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101439.1.A1_at	A	A1TS	POPTR_0011s10380	POPTR_0011s10380 (10)	scaffold_11:12816926-12817497(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101461.1.A1_at	A	A1MS	POPTR_0015s09450	POPTR_0015s09450 (9)	scaffold_15:10664878-10665094(-) (9)	NA	Q07123	Copper methylamine oxidase	AT2G42490.1	Copper amine oxidase family protein 	LOC_Os04g40040.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr3g114690.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.101467.1.S1_at	A	A1TS	POPTR_0014s18730	POPTR_0014s18730 (10)	scaffold_14:16103647-16104955(-) (10)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.101476.1.A1_s_at	A	A1TS	POPTR_0337s00210	POPTR_0337s00210 (11)	scaffold_337:10460-10655(+) (11)	NA	Q2HJ56	Periodic tryptophan protein 1 homolog	AT4G18905.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g69970.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g105580.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101485.1.A1_at	A	A1TS	POPTR_0015s07350	POPTR_0015s07350 (10)	scaffold_15:8520144-8520366(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1015.1.A1_at	A	A1TS	POPTR_0003s21380	POPTR_0003s21380 (11)	scaffold_3:19562818-19563999(-) (11)	NA	NA	NA	AT5G19860.1	"Protein of unknown function, DUF538 "	LOC_Os03g48710.1	expressed protein	Medtr4g133910.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101515.1.A1_at	A	A1MS	POPTR_0014s15600	POPTR_0014s15600 (11)	scaffold_14:11628517-11628689(+) (11)	NA	NA	NA	AT2G05755.1	Nodulin MtN21 /EamA-like transporter family protein 	NA	NA	Medtr3g110060.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.101522.1.A1_at	A	A1MS	POPTR_0004s13640	POPTR_0004s13640 (11)	scaffold_4:13996911-13997456(+) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101549.1.A1_at	A	A1TS	POPTR_0003s06300	POPTR_0003s06300 (11)	scaffold_3:7765417-7765781(-) (11)	NA	NA	NA	AT5G45540.1	Protein of unknown function (DUF594) 	LOC_Os11g42080.1	expressed protein	Medtr8g024960.1	Protein of unknown function DUF594 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101550.1.A1_at	A	A1TS	POPTR_0015s09980	POPTR_0015s09980 (11)	scaffold_15:11046433-11046829(+) (11)	NA	NA	NA	AT1G24480.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g02600.1	"methyltransferase domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.101555.1.A1_at	A	A1TS	POPTR_0018s07340	POPTR_0018s07340 (11)	scaffold_18:7523822-7524008(+) (11)	NA	Q9LJP1	GDSL esterase/lipase 4	AT3G14225.1	GDSL-motif lipase 4 	LOC_Os09g04710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.10157.1.A1_a_at	A	A1TS	POPTR_0003s08240	POPTR_0003s08240 (11)	scaffold_3:9644786-9645195(-) (11)	NA	P0C5D6	Serine/threonine-protein kinase SAPK3	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os10g41490.1	"CAMK_CAMK_like.41 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10157.2.S1_at	A	A1TS	POPTR_0003s08240	POPTR_0003s08240 (11)	scaffold_3:9646885-9648141(-) (11)	NA	P0C5D6	Serine/threonine-protein kinase SAPK3	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os10g41490.1	"CAMK_CAMK_like.41 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.101592.1.S1_at	A	A1TS	POPTR_0015s13990	POPTR_0015s13990 (9)	scaffold_15:13741969-13742972(-) (9)	NA	NA	NA	AT5G51840.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g11060.1	"ACI13, putative, expressed"	Medtr1g129850.1	"ACI13, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101597.1.A1_at	A	A1MS	POPTR_0015s00980	POPTR_0015s00980 (11)	scaffold_15:572682-573765(+) (11)	NA	P09379	GTPase-activating protein GYP7	AT3G49350.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.101605.1.A1_at	A	A1TS	POPTR_0011s16830	POPTR_0011s16830 (11)	scaffold_11:18583576-18584078(-) (11)	POPTR_0001s47240 (7)	NA	NA	AT4G26490.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os08g38580.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g104320.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.101607.1.A1_at	A	A1TS	POPTR_0006s07090	POPTR_0006s07090 (11)	scaffold_6:5100426-5101211(+) (11)	NA	NA	NA	AT5G20590.1	TRICHOME BIREFRINGENCE-LIKE 5 	LOC_Os06g44900.1	"leaf senescence related protein, putative, expressed"	Medtr8g130160.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101617.1.A1_s_at	A	A1TS	POPTR_0009s07520	POPTR_0009s07520 (11)	scaffold_9:7022022-7024794(-) (11)	NA	Q38859	DNA-directed RNA polymerase II subunit RPB11	AT3G52090.1	"DNA-directed RNA polymerase, RBP11-like "	LOC_Os07g07610.1	"RNA polymerase subunit, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.101625.1.A1_at	A	A1TS	POPTR_0001s37150	POPTR_0001s37150 (11)	scaffold_1:35980615-35980932(-) (11)	NA	Q9LDH0	"Beta-(1,2)-xylosyltransferase"	AT5G55500.1	"beta-1,2-xylosyltransferase "	LOC_Os08g39380.1	"beta 1,2-xylosyltransferase, putative, expressed"	Medtr3g076770.1	"beta 1,2 xylosyltransferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101629.1.A1_at	A	A1TA	POPTR_0004s15370	POPTR_0004s15370 (11)	scaffold_4:16028074-16028312(-) (11)	NA	NA	NA	AT2G15900.1	"Phox-associated domain;Phox-like;Sorting nexin, C-terminal "	LOC_Os11g06040.1	"PX domain containing protein, putative, expressed"	Medtr4g128670.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.101631.1.A1_at	A	A1TS	POPTR_0002s10310	POPTR_0002s10310 (11)	scaffold_2:7404261-7404455(-) (11)	NA	Q9LTX2	Transport inhibitor response 1-like protein	AT5G49980.1	auxin F-box protein 5 	LOC_Os02g52230.1	"coronatine-insensitive protein 1, putative, expressed"	Medtr5g074580.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101636.1.A1_at	A	A1TS	POPTR_0006s15660	POPTR_0006s15660 (11)	scaffold_6:13125215-13125678(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101637.1.A1_at	A	A1TS	POPTR_0008s05890	POPTR_0008s05890 (11)	scaffold_8:3469773-3470268(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT3G55560.1	AT-hook protein of GA feedback 2 	LOC_Os02g25020.1	"DNA binding protein, putative, expressed"	Medtr5g098890.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101639.1.A1_at	A	A1TS	POPTR_0004s08010	POPTR_0004s08010 (11)	scaffold_4:6551972-6552198(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101644.1.A1_at	A	A1TS	POPTR_0015s05290	POPTR_0015s05290 (11)	scaffold_15:5652932-5653473(-) (11)	NA	Q99685	Monoglyceride lipase	AT1G73480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g23150.1	"monoglyceride lipase, putative, expressed"	Medtr3g130390.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101646.1.A1_s_at	A	A2TS	POPTR_0001s27700	POPTR_0001s27700 (11)//POPTR_0001s27710 (11)	scaffold_1:26550439-26551129(-) (11)//scaffold_1:26569038-26569729(-) (11)	NA	Q7XU38	Cytochrome P450 87A3	AT1G12740.1	"cytochrome P450, family 87, subfamily A, polypeptide 2 "	LOC_Os04g48170.1	"cytochrome P450, putative, expressed"	Medtr5g010940.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.101648.1.A1_at	A	A1TS	POPTR_0005s08470	POPTR_0005s08470 (11)	scaffold_5:5863761-5863803(-) (11)	NA	Q0WR59	Probable inactive receptor kinase At5g10020	AT5G10020.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os07g43350.1	expressed protein	Medtr3g145010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.101651.1.S1_at	A	A1TS	POPTR_0013s12140	POPTR_0013s12140 (11)	scaffold_13:12779298-12780166(+) (11)	NA	Q54I39	IST1-like protein	AT1G34220.2	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os08g07830.1	"DUF292 domain containing protein, expressed"	Medtr8g088790.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101652.1.A1_at	A	A1TS	POPTR_0007s12640	POPTR_0007s12640 (11)	scaffold_7:12901745-12902247(+) (11)	NA	P29054	Transcription initiation factor IIB	AT4G36650.1	plant-specific TFIIB-related protein 	LOC_Os03g10070.1	"transcription initiation factor IIB, putative, expressed"	Medtr5g019800.1	Cyclin-like; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.101664.1.A1_at	A	A1TS	POPTR_0018s12650	POPTR_0018s12650 (11)	scaffold_18:13172166-13172221(-) (11)	POPTR_0004s12810 (7)//POPTR_0004s12760 (7)	Q9H9A5	CCR4-NOT transcription complex subunit 10	AT5G35430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g03600.1	"immunoglobulin/major histocompatibility complex, putative, expressed"	Medtr8g121410.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101664.1.A1_s_at	A	A1TS	POPTR_0018s12650	POPTR_0018s12650 (11)	scaffold_18:13172043-13172180(-) (11)//scaffold_6:4605946-4606051(-) (9)	POPTR_0004s12810 (6)//POPTR_0004s12760 (6)	Q9H9A5	CCR4-NOT transcription complex subunit 10	AT5G35430.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os09g03600.1	"immunoglobulin/major histocompatibility complex, putative, expressed"	Medtr8g121410.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101665.1.A1_at	A	A1MS	POPTR_0015s04260	POPTR_0015s04260 (11)	scaffold_15:4316942-4317468(-) (11)	NA	Q54NA6	Myb-like protein L	AT3G18100.1	myb domain protein 4r1 	LOC_Os07g04700.1	"MYB family transcription factor, putative, expressed"	AC233685_2.1	Homeodomain-related; AC233685.2 1460-8854 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101668.1.A1_at	A	A1MS	POPTR_0008s20160	POPTR_0008s20160 (10)	scaffold_8:13951048-13951273(+) (10)	NA	Q8S9G8	Squamosa promoter-binding-like protein 7	AT5G18830.1	squamosa promoter binding protein-like 7 	LOC_Os05g33810.1	"OsSPL9 - SBP-box gene family member, expressed"	Medtr2g025690.1	SBP 	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0046872|metal ion binding	GO:0005634|nucleus
PtpAffx.101676.1.A1_at	A	A1TS	POPTR_0008s07920	POPTR_0008s07920 (11)	scaffold_8:4880536-4880781(+) (11)	NA	Q9Z160	Conserved oligomeric Golgi complex subunit 1	AT5G16300.1	Vps51/Vps67 family (components of vesicular transport) protein 	LOC_Os01g56910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101679.1.A1_at	A	A1TS	POPTR_0009s14260	POPTR_0009s14260 (10)	scaffold_9:11216019-11216259(+) (10)	NA	O22265	"Signal recognition particle 43 kDa protein, chloroplastic"	AT2G47450.1	chloroplast signal recognition particle component (CAO) 	LOC_Os03g03990.1	"signal recognition particle 43 kDa protein, chloroplast precursor, putative, expressed"	NA	NA	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.101685.1.A1_s_at	A	A2TS	POPTR_0002s19540	POPTR_0002s19540 (11)//POPTR_0184s00210 (11)	scaffold_184:43297-43569(+) (11)//scaffold_2:15510725-15510997(-) (11)	NA	O22907	DEAD-box ATP-dependent RNA helicase 24	AT2G47330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g19530.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g133130.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.101690.1.A1_at	A	A1TA	POPTR_0002s01140	POPTR_0002s01140 (11)	scaffold_2:609207-609262(+) (11)	NA	NA	NA	AT5G42330.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101699.1.A1_a_at	A	A1TS	POPTR_0005s15640	POPTR_0005s15640 (11)	scaffold_5:12238137-12238936(-) (11)	NA	O35678	Monoglyceride lipase	AT5G16120.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g04620.1	"OsPOP20 - Putative Prolyl Oligopeptidase homologue, expressed"	AC233109_20.1	Alpha/beta hydrolase fold AC233109.4 76219-82338 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101700.1.A1_at	A	A1MS	POPTR_0005s01990	POPTR_0005s01990 (11)	scaffold_5:1290384-1290907(-) (11)	NA	Q8N9H8	Probable exonuclease mut-7 homolog	AT1G56310.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os05g28860.1	"3'-5' exonuclease, putative, expressed"	Medtr1g100330.1	"Polynucleotidyl transferase, Ribonuclease H fold "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.101712.1.A1_at	A	A1TS	POPTR_0010s06920	POPTR_0010s06920 (11)	scaffold_10:8154927-8155046(-) (11)	NA	Q944J0	Probable signal peptidase complex subunit 1	AT4G40042.1	Microsomal signal peptidase 12 kDa subunit (SPC12) 	LOC_Os12g25210.1	"signal peptidase complex subunit 1, putative"	Medtr3g103650.1	"Microsomal signal peptidase 12 kDa subunit; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0044260|cellular macromolecule metabolic process||GO:0006508|proteolysis||GO:0006465|signal peptide processing	GO:0008233|peptidase activity	GO:0005787|signal peptidase complex||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
PtpAffx.101717.1.A1_at	A	A1TS	POPTR_0006s24500	POPTR_0006s24500 (11)	scaffold_6:23086829-23087100(-) (11)	NA	NA	NA	AT5G11890.1	FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g39290.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr3g139940.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.101723.1.A1_s_at	A	A1TS	POPTR_0001s06740	POPTR_0001s06740 (11)	scaffold_1:5171598-5173599(-) (11)	NA	NA	NA	AT5G06970.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101735.1.A1_at	A	A1MS	POPTR_0010s23230	POPTR_0010s23230 (10)	scaffold_10:19853481-19854013(+) (10)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT5G04250.2	Cysteine proteinases superfamily protein 	LOC_Os03g64219.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g120470.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101757.1.A1_s_at	A	A1TS	POPTR_0007s13210	POPTR_0007s13210 (11)	scaffold_7:13331997-13333507(+) (11)	NA	Q9SW44	DEAD-box ATP-dependent RNA helicase 16	AT4G34910.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g51900.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g099680.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.101759.1.A1_at	A	A1MS	POPTR_0002s11870	POPTR_0002s11870 (11)	scaffold_2:8807943-8808127(+) (11)	NA	Q84WW1	F-box protein At3g12350	AT3G12350.1	F-box family protein 	LOC_Os12g32630.1	"OsFBX448 - F-box domain containing protein, expressed"	Medtr1g023010.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101781.1.A1_at	A	A1TS	POPTR_0019s13560	POPTR_0019s13560 (11)	scaffold_19:14468103-14468532(+) (11)	NA	Q5QQ56	Xylosyltransferase 1	AT4G03340.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os08g04790.1	"xylosyltransferase, putative, expressed"	AC229695_3.1	"Glycosyl transferase, family 14 AC229695.5 13205-18395 E EGN_Mt090430 200"	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.101784.1.A1_at	A	A1TS	POPTR_0017s10650	POPTR_0017s10650 (11)	scaffold_17:10124029-10125000(-) (11)	NA	P57758	Cystinosin homolog	AT5G40670.1	PQ-loop repeat family protein / transmembrane family protein 	LOC_Os12g18110.1	"PQ loop repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101791.1.A1_at	A	A1TS	POPTR_0014s11520	POPTR_0014s11520 (10)	scaffold_14:8555130-8555657(+) (11)	NA	Q9ZSM8	Histone-lysine N-methyltransferase EZA1	AT4G02020.1	SET domain-containing protein 	LOC_Os03g19480.1	"SET domain containing protein, expressed"	Medtr1g106640.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101806.1.A1_at	A	A1TS	POPTR_0006s28040	POPTR_0006s28040 (11)	scaffold_6:25893130-25893677(+) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT4G31840.1	early nodulin-like protein 15 	LOC_Os02g06670.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g138410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.101846.1.A1_at	A	A1TS	POPTR_0009s16090	POPTR_0009s16090 (11)	scaffold_9:12314150-12314969(-) (11)	NA	Q5R4J1	"Tryptophanyl-tRNA synthetase, cytoplasmic"	AT3G04600.3	Nucleotidylyl transferase superfamily protein 	LOC_Os12g35570.1	"tRNA synthetase, putative, expressed"	AC202489_14.1	"Aminoacyl-tRNA synthetase, class Ib AC202489.10 90501-83889 E EGN_Mt090430 200"	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.101875.1.A1_s_at	A	A1TS	POPTR_0008s04170	POPTR_0008s04170 (11)	scaffold_8:2335746-2335895(-) (11)	NA	NA	NA	AT4G25030.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g43060.1	expressed protein	Medtr1g121550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101899.1.A1_at	A	A1TS	POPTR_0014s06190	POPTR_0014s06190 (11)	scaffold_14:4707659-4708203(-) (11)	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os10g40740.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.101914.1.A1_at	A	A1TS	POPTR_0005s08640	POPTR_0005s08640 (11)	scaffold_5:6011838-6012193(-) (11)	NA	O65012	Cytochrome P450 78A4	AT5G09970.1	"cytochrome P450, family 78, subfamily A, polypeptide 7 "	LOC_Os10g26340.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.101918.1.A1_at	A	A1MS	POPTR_0009s04740	POPTR_0009s04740 (11)	scaffold_9:5016417-5016688(-) (11)	NA	Q56078	Periplasmic beta-glucosidase	AT3G47000.1	Glycosyl hydrolase family protein 	LOC_Os05g37700.1	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr5g078320.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.101921.1.A1_at	A	A1TS	POPTR_0008s14610	POPTR_0008s14610 (11)	scaffold_8:9703552-9704043(+) (11)	NA	NA	NA	AT1G70200.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g22070.1	expressed protein	Medtr5g036560.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.101921.1.A1_s_at	A	A1TS	POPTR_0008s14610	POPTR_0008s14610 (11)	scaffold_8:9703612-9704186(+) (11)	NA	NA	NA	AT1G70200.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g22070.1	expressed protein	Medtr5g036560.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.101922.1.A1_at	A	A1TS	POPTR_0017s01380	POPTR_0017s01380 (10)	scaffold_17:956280-957876(-) (10)	NA	Q6R0H1	Protein LHY	AT5G17300.1	Homeodomain-like superfamily protein 	LOC_Os04g49450.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101934.1.A1_at	A	A1TS	POPTR_0019s08240	POPTR_0019s08240 (11)	scaffold_19:9703404-9703523(-) (11)	NA	Q9XFH9	"Thioredoxin F2, chloroplastic"	AT5G16400.1	thioredoxin F2 	LOC_Os01g68480.1	"thioredoxin, putative, expressed"	Medtr7g089880.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.101940.1.A1_at	A	A1TS	POPTR_0016s14110	POPTR_0016s14110 (10)	scaffold_16:13342555-13343042(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101944.1.A1_at	A	A1MS	POPTR_0006s24130	POPTR_0006s24130 (11)	scaffold_6:22809226-22809447(+) (11)	NA	NA	NA	AT1G76940.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g05530.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g139670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.101954.1.A1_a_at	A	A1TS	POPTR_0017s13960	POPTR_0017s13960 (11)	scaffold_17:14114127-14114234(-) (11)	NA	NA	NA	AT1G18700.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os07g43870.3	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.101954.2.A1_at	A	A1TS	POPTR_0017s13960	POPTR_0017s13960 (11)	scaffold_17:14114336-14118268(-) (11)	NA	NA	NA	AT1G18700.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os07g43870.3	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.101954.2.A1_s_at	A	A1TS	POPTR_0017s13960	POPTR_0017s13960 (11)	scaffold_17:14114245-14118376(-) (11)	NA	NA	NA	AT1G18700.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os07g43870.3	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.10196.3.A1_a_at	A	A1TS	POPTR_0006s08410	POPTR_0006s08410 (10)	scaffold_6:6120376-6120884(-) (10)	NA	Q8BYK4	Retinol dehydrogenase 12	AT2G37540.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g05840.2	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.101967.1.A1_at	A	A1TS	POPTR_0014s10010	POPTR_0014s10010 (11)	scaffold_14:7502485-7502919(+) (11)	NA	Q9MAM3	3-ketoacyl-CoA synthase 1	AT1G01120.1	3-ketoacyl-CoA synthase 1 	LOC_Os05g49900.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr7g146040.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.101977.1.A1_s_at	A	A1TS	POPTR_0012s01170	POPTR_0012s01170 (11)	scaffold_12:804572-805588(-) (11)	NA	NA	NA	AT5G52950.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g12250.1	expressed protein	Medtr8g068100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101979.1.A1_at	A	A1MS	POPTR_0006s23600	POPTR_0006s23600 (10)	scaffold_6:22313402-22313828(+) (10)	NA	B2JQW2	2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	AT4G33180.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g42140.1	"hydrolase protein, putative, expressed"	Medtr3g139140.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101988.1.A1_at	A	A1TS	POPTR_0010s24240	POPTR_0010s24240 (11)	scaffold_10:20548606-20549076(-) (11)	NA	NA	NA	AT5G04670.1	Enhancer of polycomb-like transcription factor protein 	LOC_Os02g01020.1	expressed protein	Medtr1g117100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.101999.1.S1_s_at	A	A1TS	POPTR_0005s10940	POPTR_0005s10940 (11)	scaffold_5:7867339-7872876(-) (11)	NA	P18616	DNA-directed RNA polymerase II subunit RPB1	AT4G35800.1	RNA polymerase II large subunit 	LOC_Os05g05860.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g023000.1	"Protein kinase; RNA polymerase Rpb1, domain 6 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006366|transcription from RNA polymerase II promoter	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	"GO:0005665|""DNA-directed RNA polymerase II, core complex"""
PtpAffx.102.1.A1_at	A	A1MS	POPTR_0004s00430	POPTR_0004s00430 (10)	scaffold_4:144198-144991(+) (11)	NA	P43254	E3 ubiquitin-protein ligase COP1	AT2G32950.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g53140.1	"COP1, putative, expressed"	Medtr5g092630.1	"Zinc finger, RING-type; WD40-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102005.1.A1_at	A	A1TS	POPTR_0001s05500	POPTR_0001s05500 (10)	scaffold_1:4220309-4220386(-) (10)	NA	Q9C690	Transcription factor bHLH122	AT1G51140.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr2g117830.2	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102012.1.A1_at	A	A1TS	POPTR_0012s10640	POPTR_0012s10640 (11)	scaffold_12:11354815-11355292(-) (11)	NA	P29136	Metalloendoproteinase 1	AT1G24140.1	Matrixin family protein 	LOC_Os02g50730.1	"metalloendoproteinase 1 precursor, putative, expressed"	Medtr5g037460.1	"Peptidase M10A and M12B, matrixin and adamalysin "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0005578|proteinaceous extracellular matrix
PtpAffx.102022.1.A1_at	A	A1TS	POPTR_0002s10540	POPTR_0002s10540 (11)	scaffold_2:7629932-7630301(-) (11)	NA	O80674	Transcription factor bHLH106	AT2G41130.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr5g075080.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102029.1.A1_at	A	A1TA	POPTR_0014s12930	POPTR_0014s12930 (11)	scaffold_14:9521376-9521921(+) (11)	NA	Q570C0	Protein TRANSPORT INHIBITOR RESPONSE 1	AT3G62980.1	F-box/RNI-like superfamily protein 	LOC_Os04g32460.2	"OsFBL16 - F-box domain and LRR containing protein, expressed"	Medtr7g096650.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102031.1.A1_a_at	A	A1TS	POPTR_0010s24520	POPTR_0010s24520 (11)	scaffold_10:20704340-20704714(+) (11)	NA	P76093	Uncharacterized protein ynbD	NA	NA	LOC_Os01g64010.2	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.102032.1.A1_s_at	A	A1TS	POPTR_0007s02800	POPTR_0007s02800 (11)	scaffold_7:1623793-1624229(+) (11)	NA	NA	NA	AT1G61730.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os09g27850.1	"transcription regulator, putative, expressed"	Medtr7g140470.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102036.1.A1_at	A	A1MS	POPTR_0025s00610	POPTR_0025s00610 (11)	scaffold_25:297992-298772(+) (11)	NA	Q9LEW0	Ubiquitin carboxyl-terminal hydrolase 22	AT5G10790.1	ubiquitin-specific protease 22 	LOC_Os04g55360.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g121930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.102038.1.A1_at	A	A1TS	POPTR_0011s12300	POPTR_0011s12300 (11)	scaffold_11:15041120-15041645(-) (11)	NA	Q41249	"Protochlorophyllide reductase, chloroplastic"	AT5G54190.1	protochlorophyllide oxidoreductase A 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	Medtr7g118280.1	"Retinol dehydrogenase 12, related "	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.102068.1.A1_at	A	A1TS	POPTR_0010s10090	POPTR_0010s10090 (11)	scaffold_10:10671781-10672240(+) (11)	NA	NA	NA	AT5G26230.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g32440.1	expressed protein	Medtr5g006090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102073.1.A1_s_at	A	A1TS	POPTR_0009s16570	POPTR_0009s16570 (11)	scaffold_9:12547693-12548181(-) (11)	NA	P73456	Cell division protein ftsZ	AT2G36250.2	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.102078.1.A1_at	A	A1TS	POPTR_0001s17900	POPTR_0001s17900 (11)	scaffold_1:14815394-14815743(-) (11)	NA	P61817	Sirohydrochlorin ferrochelatase	AT1G50170.1	sirohydrochlorin ferrochelatase B 	LOC_Os02g19440.1	"sirohydrochlorin ferrochelatase, putative, expressed"	Medtr6g005330.2	Cobalamin (vitamin B12) biosynthesis CbiX protein 	GO:0009236|cobalamin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity||GO:0046872|metal ion binding	NA
PtpAffx.102081.1.A1_at	A	A1MS	POPTR_0004s05420	POPTR_0004s05420 (10)	scaffold_4:4175810-4176173(-) (10)	NA	NA	NA	AT2G34070.1	TRICHOME BIREFRINGENCE-LIKE 37 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr2g019150.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1021.1.A1_at	A	A1TS	POPTR_0001s08210	POPTR_0001s08210 (11)	scaffold_1:6272689-6273007(-) (11)	NA	Q9SZ69	Zinc finger A20 and AN1 domain-containing stress-associated protein 7	AT4G12040.2	A20/AN1-like zinc finger family protein 	LOC_Os02g10200.2	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g127110.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.10210.1.S1_at	A	A1TS	POPTR_0003s12160	POPTR_0003s12160 (11)	scaffold_3:12831960-12832376(-) (11)	NA	P46280	"Elongation factor Tu, chloroplastic"	AT4G20360.1	RAB GTPase homolog E1B 	LOC_Os02g38210.1	"elongation factor Tu, putative, expressed"	Medtr3g115100.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.102124.1.A1_at	A	A1TS	POPTR_0009s02210	POPTR_0009s02210 (11)	scaffold_9:2930146-2933623(-) (11)	NA	P53145	Large subunit GTPase 1	AT1G08410.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g42370.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g067030.1	Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.102128.1.A1_at	A	A1TS	POPTR_0008s01780	POPTR_0008s01780 (11)	scaffold_8:840317-840646(-) (11)	NA	Q9LZR8	PAN domain-containing protein At5g03700	AT5G03700.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os02g32620.1	"PAN domain-containing protein At5g03700 precursor, putative, expressed"	Medtr7g126630.1	Curculin-like (mannose-binding) lectin; N/apple PAN 	NA	GO:0005529|sugar binding	NA
PtpAffx.102133.1.A1_s_at	A	A1TS	POPTR_0005s10470	POPTR_0005s10470 (11)	scaffold_5:7519081-7520645(+) (11)	NA	NA	NA	AT2G17550.1	unknown protein; Has 264 Blast hits to 258 proteins in 65 species: Archae - 5; Bacteria - 5; Metazoa - 66; Fungi - 16; Plants - 107; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os03g03860.3	expressed protein	Medtr5g024230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102136.1.A1_at	A	A1TS	POPTR_0008s01480	POPTR_0008s01480 (11)	scaffold_8:720085-720293(+) (11)	NA	Q8LEU3	"Chlorophyll(ide) b reductase NOL, chloroplastic"	AT5G04900.1	NYC1-like 	LOC_Os03g45194.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g099660.2	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.102136.1.A1_s_at	A	A1TS	POPTR_0008s01480	POPTR_0008s01480 (11)	scaffold_8:718479-719956(+) (11)	NA	Q8LEU3	"Chlorophyll(ide) b reductase NOL, chloroplastic"	AT5G04900.1	NYC1-like 	LOC_Os03g45194.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g099660.2	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.102140.1.A1_at	A	A1TS	POPTR_0014s15590	POPTR_0014s15590 (11)	scaffold_14:11604711-11605195(-) (11)	NA	O48766	Endoglucanase 11	AT2G32990.1	glycosyl hydrolase 9B8 	LOC_Os02g50490.1	"endoglucanase, putative, expressed"	Medtr5g093090.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.102143.1.A1_s_at	A	A1TS	POPTR_0001s11780	POPTR_0001s11780 (10)	scaffold_1:9141735-9142185(+) (10)	NA	Q8VY90	Ethylene-responsive transcription factor ERF105	AT5G51190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.102162.1.A1_at	A	A1TS	POPTR_0014s08290	POPTR_0014s08290 (11)	scaffold_14:6160860-6161221(-) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT4G00335.2	RING-H2 finger B1A 	LOC_Os11g18947.2	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_12.1	"Zinc finger, RING-type AC235567.1 46372-52293 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102169.1.A1_at	A	A1TS	POPTR_0005s07140	POPTR_0005s07140 (11)	scaffold_5:4792127-4792393(-) (11)	NA	Q9MA92	Filament-like plant protein 3	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os07g32340.3	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102170.1.A1_at	A	A1TS	POPTR_0012s07420	POPTR_0012s07420 (10)	scaffold_12:8350933-8351393(+) (10)	NA	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os07g09580.1	"aminoacyl-tRNA synthetase, putative, expressed"	AC233677_23.1	"aminoacyl-tRNA synthetase, putative AC233677.2 135287-140524 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102182.1.A1_at	A	A2TS	POPTR_0013s13990	POPTR_0013s13990 (11)//POPTR_0013s14000 (11)	scaffold_13:14295556-14295591(+) (11)//scaffold_13:14296372-14296407(+) (11)//scaffold_13:14304848-14304883(+) (11)	NA	Q9LEL6	(RS)-norcoclaurine 6-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os05g43930.1	"O-methyltransferase, putative, expressed"	Medtr4g047310.1	"Blue (type 1) copper domain; O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.102186.1.A1_s_at	A	A2TS	POPTR_0017s03350	POPTR_0017s03350 (11)//POPTR_0017s00760 (9)	scaffold_17:546693-546789(-) (11)//scaffold_17:2462181-2462277(+) (11)	NA	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570	AT3G47570.1	Leucine-rich repeat protein kinase family protein 	LOC_Os11g29790.1	"receptor kinase, putative"	Medtr5g026330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.102205.1.A1_at	A	A1TS	POPTR_0019s04860	POPTR_0019s04860 (10)	scaffold_19:5103843-5103972(-) (10)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr7g100310.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.102211.1.A1_s_at	A	A1TS	POPTR_0014s18540	POPTR_0014s18540 (11)	scaffold_14:15852338-15852700(+) (11)	NA	NA	NA	AT4G28760.2	Protein of unknown function (DUF3741) 	LOC_Os03g04990.1	expressed protein	Medtr7g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102216.1.A1_s_at	A	A1TS	POPTR_0001s16640	POPTR_0001s16640 (11)	scaffold_1:13418879-13419524(-) (11)	NA	Q9LMA8	Protein TIFY 10A	AT1G19180.1	jasmonate-zim-domain protein 1 	LOC_Os03g28940.1	"ZIM domain containing protein, putative, expressed"	Medtr2g049880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102231.1.A1_at	A	A1TS	POPTR_0003s19320	POPTR_0003s19320 (11)	scaffold_3:18085214-18085700(-) (11)	NA	NA	NA	AT3G12320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06980.4); Has 102 Blast hits to 102 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	NA	NA	Medtr8g044020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102238.1.A1_s_at	A	A1TS	POPTR_0002s20920	POPTR_0002s20920 (11)	scaffold_2:17149583-17149675(-) (11)	NA	NA	NA	AT1G02960.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02965.1); Has 100 Blast hits to 99 proteins in 48 species: Archae - 0; Bacteria - 4; Metazoa - 26; Fungi - 13; Plants - 29; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). 	LOC_Os02g48116.1	expressed protein	Medtr3g106950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102252.1.S1_at	A	A1TS	POPTR_0006s27440	POPTR_0006s27440 (11)	scaffold_6:25343392-25344417(-) (11)	NA	Q6DJ03	Protein MEMO1	AT2G25280.1	"CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). "	LOC_Os08g20270.2	"MEMO1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102270.1.A1_at	A	A1TS	POPTR_0003s13510	POPTR_0003s13510 (11)	scaffold_3:13894160-13894652(+) (11)	NA	NA	NA	AT3G61600.1	POZ/BTB containin G-protein 1 	LOC_Os02g16000.1	"E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.102281.1.A1_at	A	A1TA	POPTR_0017s07100	POPTR_0017s07100 (11)	scaffold_17:5501514-5506131(+) (11)	NA	NA	NA	AT5G27780.1	SAUR-like auxin-responsive protein family  	LOC_Os09g37430.1	OsSAUR48 - Auxin-responsive SAUR gene family member	Medtr4g098320.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102298.1.S1_at	A	A1TS	POPTR_0002s23450	POPTR_0002s23450 (11)	scaffold_2:20971978-20973014(+) (11)	NA	NA	NA	AT5G16490.1	ROP-interactive CRIB motif-containing protein 4 	LOC_Os03g63060.1	"P21-Rho-binding domain containing protein, putative, expressed"	Medtr7g021460.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1023.1.S1_at	A	A1TS	POPTR_0018s13980	POPTR_0018s13980 (11)	scaffold_18:14240728-14241564(+) (11)	NA	NA	NA	AT2G19180.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.1); Has 64 Blast hits to 64 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g13320.1	expressed protein	Medtr2g042680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102306.1.A1_at	A	A1TA	POPTR_0003s21080	POPTR_0003s21080 (11)	scaffold_3:19378832-19379254(-) (11)	NA	P28752	Tubulin alpha-1 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.102308.1.A1_at	A	A1MS	POPTR_0005s01720	POPTR_0005s01720 (10)	scaffold_5:1151355-1152754(+) (10)	NA	Q9FP29	Homeobox protein knotted-1-like 1	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os01g19694.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.102308.2.A1_at	A	A1TS	POPTR_0013s01000	POPTR_0013s01000 (9)	scaffold_13:545920-546128(+) (9)	NA	Q9FP29	Homeobox protein knotted-1-like 1	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os01g19694.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.102311.1.A1_at	A	A1TS	POPTR_0014s14320	POPTR_0014s14320 (11)	scaffold_14:10486688-10487178(+) (11)	NA	NA	NA	AT4G14200.1	Pentatricopeptide repeat (PPR) superfamily protein 	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.102316.1.S1_a_at	A	A2TS	POPTR_0006s00740	POPTR_0006s00740 (11)//POPTR_0016s00790 (11)	scaffold_16:294652-294827(+) (11)//scaffold_6:390728-390903(+) (11)	NA	NA	NA	AT5G47635.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g14194.1	"POEI28 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102316.1.S1_at	A	A1TS	POPTR_0006s00740	POPTR_0006s00740 (11)	scaffold_6:388884-390782(+) (11)	NA	NA	NA	AT5G47635.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g14194.1	"POEI28 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102317.1.A1_at	A	A1TS	POPTR_0006s12930	POPTR_0006s12930 (11)	scaffold_6:10191401-10192049(+) (11)	NA	Q653H7	Auxin response factor 18	AT4G30080.1	auxin response factor 16 	LOC_Os06g47150.3	"auxin response factor 18, putative, expressed"	Medtr2g110140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.102322.1.A1_at	A	A1TS	POPTR_0005s23730	POPTR_0005s23730 (10)	scaffold_5:22491705-22492147(+) (10)	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT3G63400.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.102330.1.A1_s_at	A	A1TS	POPTR_0008s02650	POPTR_0008s02650 (11)	scaffold_8:1340964-1341316(-) (11)	NA	Q9LZR3	Glucomannan 4-beta-mannosyltransferase 9	AT5G03760.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr1g073500.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102341.1.A1_at	A	A1TS	POPTR_0010s25890	POPTR_0010s25890 (11)	scaffold_10:21344563-21345230(-) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102341.2.A1_at	A	A1TS	POPTR_0010s25900	POPTR_0010s25900 (11)	scaffold_10:21350554-21350592(-) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102341.3.A1_x_at	A	A1TS	POPTR_0008s00660	POPTR_0008s00660 (11)	scaffold_8:301742-302468(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102342.1.A1_at	A	A1TS	POPTR_0011s16910	POPTR_0011s16910 (10)	scaffold_11:18632566-18633015(+) (10)	NA	Q1LUT1	Enhancer of mRNA-decapping protein 4	AT3G13300.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g080420.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102351.1.A1_at	A	A1TS	POPTR_0015s10610	POPTR_0015s10610 (11)	scaffold_15:11474393-11474647(-) (11)	NA	Q14746	Conserved oligomeric Golgi complex subunit 2	AT4G24840.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g63250.1	"brefeldin A-sensitive Golgi protein-like, putative, expressed"	Medtr8g109320.1	"COG complex component, COG2 "	GO:0007030|Golgi organization||GO:0015031|protein transport	NA	GO:0016020|membrane
PtpAffx.102352.1.A1_at	A	A1TS	POPTR_0012s14780	POPTR_0012s14780 (11)	scaffold_12:14533249-14533284(+) (11)	NA	Q93Y22	Coatomer subunit delta	AT5G05010.2	clathrin adaptor complexes medium subunit family protein 	LOC_Os05g24601.1	"coatomer subunit delta, putative, expressed"	Medtr2g122280.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.102352.1.A1_s_at	A	A1TS	POPTR_0012s14780	POPTR_0012s14780 (11)	scaffold_12:14533196-14533252(+) (11)	NA	Q93Y22	Coatomer subunit delta	AT5G05010.2	clathrin adaptor complexes medium subunit family protein 	LOC_Os05g24601.1	"coatomer subunit delta, putative, expressed"	Medtr2g122280.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.102356.1.A1_at	A	A1TS	POPTR_0019s08910	POPTR_0019s08910 (11)	scaffold_19:10339539-10339629(-) (9)//scaffold_19:10477449-10477597(-) (11)//scaffold_780:6903-6993(-) (9)	NA	Q149N8	E3 ubiquitin-protein ligase SHPRH	AT2G40770.1	zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding 	LOC_Os07g48270.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g076800.1	"SNF2-related; Zinc finger, RING-type; Claudin tight junction protein; Zinc finger, FYVE/PHD-type; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.102357.1.A1_s_at	A	A1TS	POPTR_0001s08000	POPTR_0001s08000 (11)	scaffold_1:6053652-6055057(-) (11)	NA	Q8VYP5	Probable S-acyltransferase At3g60800	AT3G60800.1	DHHC-type zinc finger family protein 	LOC_Os03g58960.1	"DHHC zinc finger domain containing protein, expressed"	Medtr4g024940.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.102357.2.A1_at	A	A1TS	POPTR_0003s11520	POPTR_0003s11520 (11)	scaffold_3:12283378-12283595(-) (11)	NA	Q8VYP5	Probable S-acyltransferase At3g60800	AT3G60800.1	DHHC-type zinc finger family protein 	LOC_Os03g58960.1	"DHHC zinc finger domain containing protein, expressed"	Medtr4g024940.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.102365.1.A1_s_at	A	A1TS	POPTR_0008s04330	POPTR_0008s04330 (11)	scaffold_8:2424830-2425212(+) (11)	NA	Q4V9P0	S-adenosylmethionine mitochondrial carrier protein	AT2G35800.1	mitochondrial substrate carrier family protein 	LOC_Os11g01270.1	"mitochondrial substrate carrier family protein, putative, expressed"	Medtr1g122080.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102386.1.A1_at	A	A1TS	POPTR_0004s22050	POPTR_0004s22050 (9)	scaffold_4:20985676-20985708(-) (9)	NA	NA	NA	AT2G28410.1	unknown protein; Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g110400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102389.2.S1_a_at	A	A1TS	POPTR_0003s13190	POPTR_0003s13190 (11)	scaffold_3:13582943-13583480(-) (11)	NA	Q8LPH6	Transcription factor MYB86	AT1G63910.1	myb domain protein 103 	LOC_Os08g05520.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g010100.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102390.1.A1_at	A	A1TA	POPTR_0011s14520	POPTR_0011s14520 (10)	scaffold_11:16883654-16883840(-) (10)	NA	Q6Y2X3	DnaJ homolog subfamily C member 14	AT1G79030.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g41820.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g077040.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.102402.1.A1_at	A	A1TS	POPTR_0003s09740	POPTR_0003s09740 (11)	scaffold_3:10979526-10979955(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g028080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102402.2.A1_a_at	A	A1MS	POPTR_0003s09740	POPTR_0003s09740 (11)	scaffold_3:10980345-10981239(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g028080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102412.1.A1_at	A	A1TA	POPTR_0002s14360	POPTR_0002s14360 (9)	scaffold_2:10637174-10637474(-) (9)	NA	P28769	T-complex protein 1 subunit alpha	AT3G20050.1	T-complex protein 1 alpha subunit 	LOC_Os04g46620.1	"T-complex protein, putative, expressed"	Medtr4g136760.1	"T-complex protein 1, alpha subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.102425.1.A1_at	A	A1TS	POPTR_0006s22430	POPTR_0006s22430 (11)	scaffold_6:21439435-21439869(-) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT3G11590.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G22310.1); Has 22320 Blast hits to 15179 proteins in 1213 species: Archae - 372; Bacteria - 2307; Metazoa - 10906; Fungi - 1700; Plants - 1146; Viruses - 65; Other Eukaryotes - 5824 (source: NCBI BLink). 	LOC_Os04g31400.1	expressed protein	Medtr2g107440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102427.1.A1_at	A	A1TS	POPTR_0013s00710	POPTR_0013s00710 (10)	scaffold_13:348097-348493(+) (10)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.102427.1.A1_s_at	A	A1TS	POPTR_0013s00710	POPTR_0013s00710 (11)	scaffold_13:348161-348396(+) (11)	NA	Q38910	Probable xyloglucan endotransglucosylase/hydrolase protein 23	AT4G25810.1	xyloglucan endotransglycosylase 6 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.102441.1.S1_s_at	A	A1TS	POPTR_0001s37470	POPTR_0001s37470 (11)	scaffold_1:36449503-36449780(+) (11)	NA	NA	NA	AT5G55610.1	"unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os12g31490.1	expressed protein	Medtr4g129710.1	"receptor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102451.1.S1_s_at	A	A1TS	POPTR_0017s06600	POPTR_0017s06600 (11)	scaffold_17:5009383-5012097(-) (11)	NA	Q58DF3	TraB domain-containing protein	AT1G05270.1	TraB family protein 	LOC_Os05g42010.1	"TraB family protein, putative, expressed"	Medtr6g059350.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102452.1.S1_s_at	A	A1TS	POPTR_0002s00330	POPTR_0002s00330 (11)	scaffold_2:82923-83137(+) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT1G76660.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). 	LOC_Os01g01390.4	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10247.1.A1_a_at	A	A2TS	POPTR_0006s11320	POPTR_0016s14870 (11)//POPTR_0006s11320 (11)	scaffold_16:13978345-13978391(-) (11)//scaffold_6:8590013-8590059(-) (11)	NA	Q9SVG9	Calcium-binding protein CML42	AT4G20780.1	calmodulin like 42 	LOC_Os03g21380.2	"OsCML27 - Calmodulin-related calcium sensor protein, expressed"	Medtr7g080780.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10247.1.A1_at	A	A1TS	POPTR_0006s11320	POPTR_0006s11320 (11)	scaffold_6:8589655-8590103(-) (11)	NA	Q9SVG9	Calcium-binding protein CML42	AT4G20780.1	calmodulin like 42 	LOC_Os03g21380.2	"OsCML27 - Calmodulin-related calcium sensor protein, expressed"	Medtr7g080780.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10247.2.S1_at	A	A1TS	POPTR_0016s14870	POPTR_0016s14870 (11)	scaffold_16:13977952-13978462(-) (11)	NA	Q9SVG9	Calcium-binding protein CML42	AT4G20780.1	calmodulin like 42 	LOC_Os03g21380.2	"OsCML27 - Calmodulin-related calcium sensor protein, expressed"	Medtr7g080780.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102470.1.S1_at	A	A1TS	POPTR_0019s03170	POPTR_0019s03170 (11)	scaffold_19:3188480-3188844(+) (11)	NA	Q8LDC8	Ethylene-responsive transcription factor 1B	AT3G23240.1	ethylene response factor 1 	LOC_Os03g64260.1	"AP2 domain containing protein, expressed"	Medtr1g042600.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.102478.1.A1_at	A	A1TS	POPTR_0005s16180	POPTR_0005s16180 (11)	scaffold_5:12858088-12859019(+) (11)	NA	P36859	Nitrate reductase [NADH]	AT1G37130.1	nitrate reductase 2 	LOC_Os08g36480.1	"nitrate reductase, putative, expressed"	Medtr3g098350.1	Mo-co oxidoreductase dimerisation domain 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0030151|molybdenum ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.102489.1.S1_a_at	A	A1MS	POPTR_0005s10270	POPTR_0005s10270 (9)	scaffold_11:7948343-7948421(-) (11)//scaffold_5:7357690-7357759(+) (9)	NA	Q8W2B8	Serine acetyltransferase 4	AT4G35640.1	serine acetyltransferase 3;2 	LOC_Os03g04140.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g023630.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
PtpAffx.1025.1.A1_x_at	A	A1TS	POPTR_0012s03490	POPTR_0012s03490 (11)	scaffold_12:2746331-2747299(-) (10)	NA	P20290	Transcription factor BTF3	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1025.10.S1_a_at	A	A1TS	POPTR_0009s15490	POPTR_0009s15490 (11)	scaffold_9:11969988-11970653(+) (11)	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1025.10.S1_at	A	A1TS	POPTR_0009s15490	POPTR_0009s15490 (11)	scaffold_9:11969813-11970729(+) (11)	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1025.12.S1_at	A	A1TS	POPTR_0017s10630	POPTR_0017s10630 (11)	scaffold_17:10111885-10113666(+) (11)	NA	Q9FJI5	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
PtpAffx.1025.17.S1_at	A	A1TS	POPTR_0006s28550	POPTR_0006s28550 (10)	scaffold_6:26224161-26224428(+) (10)	NA	Q54YK1	Putative UDP-sugar transporter DDB_G0278631	AT4G31600.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os06g08860.1	"transporter family protein, putative, expressed"	Medtr3g133130.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1025.2.A1_x_at	A	A1TS	POPTR_0004s20220	POPTR_0004s20220 (10)	scaffold_4:19843970-19844305(+) (11)	NA	Q42699	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1025.23.A1_at	A	A1MS	POPTR_0012s03490	POPTR_0012s03490 (10)	scaffold_12:2746769-2746961(-) (10)	NA	P20290	Transcription factor BTF3	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1025.4.A1_a_at	A	A1TS	POPTR_0015s05470	POPTR_0015s05470 (11)	scaffold_15:5818868-5819069(+) (11)	NA	P20290	Transcription factor BTF3	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1025.4.A1_at	A	A1TS	POPTR_0015s05470	POPTR_0015s05470 (11)	scaffold_15:5818434-5819313(+) (11)	NA	P20290	Transcription factor BTF3	AT1G17880.1	basic transcription factor 3 	LOC_Os03g01910.1	"transcription factor BTF3, putative, expressed"	Medtr3g021570.1	Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102575.1.S1_at	A	A1TS	POPTR_0010s12060	POPTR_0010s12060 (11)	scaffold_10:12155388-12155977(-) (11)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102588.1.A1_at	A	A1TS	POPTR_0001s01960	POPTR_0001s01960 (11)	scaffold_1:1432880-1433329(+) (11)	NA	Q9FVR6	"Uncharacterized protein At1g32220, chloroplastic"	AT1G32220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g33060.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g029140.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1026.1.S1_a_at	A	A5TS	POPTR_0014s06020	POPTR_0176s00240 (11)//POPTR_0176s00220 (11)//POPTR_0014s06020 (11)//POPTR_1353s00200 (11)//POPTR_0366s00210 (11)	scaffold_1353:2285-2504(+) (11)//scaffold_1353:3742-3962(+) (11)//scaffold_14:4501638-4501857(-) (11)//scaffold_176:22673-22892(-) (11)//scaffold_176:33974-34193(-) (11)//scaffold_366:5484-5703(-) (11)	NA	Q5PP62	SPX domain-containing protein 3	AT2G45130.1	SPX domain gene 3 	LOC_Os03g29250.1	"SPX domain-containing protein, putative, expressed"	Medtr8g120400.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1026.2.A1_at	A	A1TS	POPTR_0176s00220	POPTR_0176s00220 (11)	scaffold_176:22255-22666(-) (11)	NA	Q5PP62	SPX domain-containing protein 3	AT2G45130.1	SPX domain gene 3 	LOC_Os03g29250.1	"SPX domain-containing protein, putative, expressed"	Medtr8g120400.1	"SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10261.1.S1_a_at	A	A2TS	POPTR_0006s00810	POPTR_0016s01940 (11)//POPTR_0006s00810 (11)	scaffold_16:887581-887696(-) (11)//scaffold_6:451885-452000(+) (11)	NA	NA	NA	AT4G39720.1	VQ motif-containing protein 	LOC_Os09g20460.1	"VQ domain containing protein, putative, expressed"	Medtr4g089730.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10261.1.S1_at	A	A1TS	POPTR_0016s01940	POPTR_0016s01940 (11)	scaffold_16:887408-887857(-) (11)	NA	NA	NA	AT4G39720.1	VQ motif-containing protein 	LOC_Os08g31660.1	"VQ domain containing protein, putative, expressed"	Medtr4g089730.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10261.2.A1_at	A	A1TS	POPTR_0006s00810	POPTR_0006s00810 (9)	scaffold_6:451693-452119(+) (9)	NA	NA	NA	AT4G39720.1	VQ motif-containing protein 	LOC_Os09g20460.1	"VQ domain containing protein, putative, expressed"	Medtr4g089730.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102614.1.S1_at	A	A1TS	POPTR_0001s32490	POPTR_0001s32490 (10)	scaffold_1:30810015-30810858(-) (10)	NA	Q9ZTS1	Probable methionyl-tRNA synthetase	AT4G13780.1	"methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative "	LOC_Os06g31210.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.102643.1.S1_s_at	A	A1TS	POPTR_0003s11080	POPTR_0003s11080 (11)	scaffold_3:11940612-11941059(+) (11)	NA	Q05085	Nitrate transporter 1.1	AT1G12110.1	nitrate transporter 1.1 	LOC_Os08g05910.1	"peptide transporter PTR2, putative, expressed"	Medtr5g012420.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.102670.1.S1_at	A	A1TS	POPTR_0010s21030	POPTR_0010s21030 (10)	scaffold_10:18465570-18467749(+) (10)	NA	Q9M2T1	AP3-complex subunit beta-A	AT3G55480.2	protein affected trafficking 2 	LOC_Os01g74180.1	"adaptin, putative, expressed"	Medtr5g087340.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.102687.3.A1_s_at	A	A1TA	POPTR_0001s45090	POPTR_0001s45090 (10)	scaffold_1:42158375-42158424(+) (11)//scaffold_1:42267723-42267772(+) (10)//scaffold_1:42451940-42451989(+) (11)//scaffold_1:42509935-42509984(+) (11)//scaffold_1:42526742-42526791(+) (11)//scaffold_1:43972479-43972526(-) (9)//scaffold_1:45400797-45400843(-) (10)//scaffold_1:47991244-47991293(+) (11)//scaffold_1:48188054-48188103(+) (11)//scaffold_13:5259754-5259800(+) (10)//scaffold_2990:329-378(+) (11)//scaffold_49:78735-78781(+) (10)//scaffold_49:111564-111613(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1027.1.A1_a_at	A	A2TS	POPTR_0001s08640	POPTR_0001s08640 (11)//POPTR_0003s12060 (11)	scaffold_1:6575270-6576252(-) (11)//scaffold_3:12744623-12745568(-) (11)	NA	Q93ZQ5	SPX domain-containing membrane protein At4g22990	AT4G22990.1	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os04g48390.1	"uncharacterized membrane protein, putative, expressed"	Medtr1g126330.1	"SPX, N-terminal; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1027.1.A1_at	A	A1TS	POPTR_0003s12060	POPTR_0003s12060 (11)	scaffold_3:12744473-12745342(-) (11)	NA	Q93ZQ5	SPX domain-containing membrane protein At4g22990	AT4G22990.1	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os04g48390.1	"uncharacterized membrane protein, putative, expressed"	Medtr1g126330.1	"SPX, N-terminal; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1027.2.A1_at	A	A1TS	POPTR_0001s08640	POPTR_0001s08640 (11)	scaffold_1:6575092-6576030(-) (11)	NA	Q93ZQ5	SPX domain-containing membrane protein At4g22990	AT4G22990.1	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os04g48390.1	"uncharacterized membrane protein, putative, expressed"	Medtr1g126330.1	"SPX, N-terminal; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10270.2.A1_a_at	A	A1TS	POPTR_0003s21320	POPTR_0003s21320 (11)	scaffold_3:19526603-19527378(-) (11)	NA	Q07100	Serine/threonine-protein phosphatase PP2A-4 catalytic subunit	AT2G42500.1	protein phosphatase 2A-3 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	Medtr4g133950.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.102710.1.A1_a_at	A	A1TS	POPTR_0018s08330	POPTR_0018s08330 (11)	scaffold_18:9272023-9272114(-) (11)	NA	NA	NA	AT1G74530.3	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os08g07430.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102710.1.A1_at	A	A1MS	POPTR_0018s08330	POPTR_0018s08330 (11)	scaffold_18:9271745-9272270(-) (11)	NA	NA	NA	AT1G74530.3	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os08g07430.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102710.2.A1_at	A	A1TS	POPTR_0018s08330	POPTR_0018s08330 (10)	scaffold_18:9270061-9270996(-) (10)	NA	NA	NA	AT1G74530.3	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os08g07430.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102749.1.S1_at	A	A1TS	POPTR_0003s15010	POPTR_0003s15010 (11)	scaffold_3:14910358-14911291(+) (11)	NA	Q8L6Y4	Polycomb group protein EMBRYONIC FLOWER 2	AT5G51230.1	VEFS-Box of polycomb protein 	LOC_Os09g13630.1	"ZOS9-03 - C2H2 zinc finger protein, expressed"	Medtr5g013280.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102758.1.S1_at	A	A1TS	POPTR_0002s21510	POPTR_0002s21510 (9)	scaffold_2:17996667-17998260(-) (9)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT3G21630.1	chitin elicitor receptor kinase 1 	LOC_Os08g42580.1	"protein kinase domain containing protein, expressed"	Medtr5g093450.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.102795.1.A1_s_at	A	A1TS	POPTR_0001s44690	POPTR_0001s44690 (11)	scaffold_1:45129019-45130548(-) (11)	NA	NA	NA	AT1G50900.1	Ankyrin repeat family protein 	LOC_Os07g33660.1	expressed protein	Medtr3g020820.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102817.1.S1_s_at	A	A1TS	POPTR_0001s25670	POPTR_0001s25670 (11)	scaffold_1:24726920-24726956(-) (11)	NA	NA	NA	AT3G47070.1	"LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr5g078450.1	"thylakoid soluble phosphoprotein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102843.1.S1_at	A	A1TS	POPTR_0001s38040	POPTR_0001s38040 (11)	scaffold_1:37081648-37083467(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102862.1.S1_s_at	A	A1TS	POPTR_0001s23510	POPTR_0001s23510 (11)	scaffold_1:22906569-22908036(-) (11)	NA	Q5RF97	Box C/D snoRNA protein 1	AT1G04945.2	HIT-type Zinc finger family protein 	LOC_Os01g73150.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10288.1.A1_a_at	A	A1MA	POPTR_0014s06110	POPTR_0014s06110 (11)	scaffold_14:4586704-4586925(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10288.2.A1_at	A	A1MA	POPTR_0014s06110	POPTR_0014s06110 (9)	scaffold_14:4586593-4587157(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1029.1.S1_at	A	A1TS	POPTR_0008s14170	POPTR_0008s14170 (11)	scaffold_8:9352631-9354503(-) (11)	NA	NA	NA	AT1G75010.1	GTP binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102951.1.S1_at	A	A1TS	POPTR_0018s06410	POPTR_0018s06410 (11)	scaffold_18:6306542-6306944(+) (11)	NA	NA	NA	AT2G03500.1	Homeodomain-like superfamily protein 	LOC_Os01g08160.1	"MYB family transcription factor, putative, expressed"	Medtr8g118880.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102960.1.S1_at	A	A1TS	POPTR_0006s21470	POPTR_0006s21470 (11)	scaffold_6:20538518-20538683(-) (11)	NA	NA	NA	AT2G35880.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os11g36340.1	"lymphoid organ expressed yellow head virus receptor protein, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10297.1.S1_at	A	A1TS	POPTR_0004s23310	POPTR_0004s23310 (11)	scaffold_4:22092224-22092550(+) (11)	NA	Q02028	"Stromal 70 kDa heat shock-related protein, chloroplastic"	AT5G49910.1	chloroplast heat shock protein 70-2 	LOC_Os12g14070.1	"DnaK family protein, putative, expressed"	Medtr2g005480.1	Chaperone DnaK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.102970.1.A1_at	A	A1TS	POPTR_0006s19320	POPTR_0006s19320 (10)	scaffold_6:18363339-18363688(+) (10)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT2G23950.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g34380.1	"receptor-like kinase, putative, expressed"	Medtr8g144660.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.102976.1.S1_at	A	A1TS	POPTR_0004s12340	POPTR_0004s12340 (10)	scaffold_4:11451969-11453248(+) (11)	NA	Q8GWT1	Probable galacturonosyltransferase 14	AT5G15470.1	galacturonosyltransferase 14 	LOC_Os12g38930.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g011880.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.102987.1.S1_s_at	A	A1TS	POPTR_0019s14860	POPTR_0019s14860 (11)	scaffold_19:15513984-15514348(-) (11)	NA	O22932	CBL-interacting serine/threonine-protein kinase 11	AT2G30360.1	SOS3-interacting protein 4 	LOC_Os05g43840.1	"CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g082950.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1030.1.S1_s_at	A	A1TS	POPTR_0016s14270	POPTR_0016s14270 (11)	scaffold_16:13523085-13523394(+) (11)	NA	Q9M5X8	Non-specific lipid-transfer protein	AT2G38540.1	lipid transfer protein 1 	LOC_Os11g02369.1	"LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1030.1.S1_x_at	A	A1TS	POPTR_0016s14270	POPTR_0016s14270 (11)	scaffold_16:13523072-13523625(+) (11)	NA	Q9M5X8	Non-specific lipid-transfer protein	AT2G38540.1	lipid transfer protein 1 	LOC_Os11g02369.1	"LTPL7 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g036880.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103015.1.S1_at	A	A1TS	POPTR_0001s17000	POPTR_0001s17000 (11)	scaffold_1:13809914-13810338(-) (11)	NA	Q8VE65	Transcription initiation factor TFIID subunit 12	AT1G17440.2	Transcription initiation factor TFIID subunit A 	LOC_Os01g62820.3	"Transcription initiation factor TFIID subunit A containing protein, expressed"	Medtr8g024640.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006352|transcription initiation||GO:0006461|protein complex assembly	GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
PtpAffx.103022.1.S1_at	A	A1TS	POPTR_0018s10000	POPTR_0018s10000 (11)	scaffold_18:11055855-11056816(+) (11)	NA	Q9FKM7	Putative auxin-responsive protein IAA33	AT5G57420.1	indole-3-acetic acid inducible 33 	LOC_Os04g55950.1	expressed protein	Medtr8g129010.1	Aux/IAA_ARF_dimerisation 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103103.1.S1_s_at	A	A1TS	POPTR_0004s09350	POPTR_0004s09350 (11)	scaffold_4:7898032-7898463(+) (11)	NA	Q9LF46	2-hydroxyacyl-CoA lyase	AT5G17380.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os01g32080.1	"thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed"	Medtr3g150570.1	"Thiamine pyrophosphate enzyme, central region "	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.103104.1.A1_at	A	A1TS	POPTR_0012s02480	POPTR_0012s02480 (11)	scaffold_12:2037418-2037856(-) (11)	NA	Q9STP8	Acyl-CoA-binding domain-containing protein 2	AT4G27780.1	acyl-CoA binding protein 2 	LOC_Os04g58550.1	"acyl-CoA-binding domain-containing protein 6, putative, expressed"	Medtr5g046490.1	Ankyrin 	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.103104.2.A1_s_at	A	A1TS	POPTR_0015s01250	POPTR_0015s01250 (11)	scaffold_15:789435-789793(+) (11)	NA	Q9STP8	Acyl-CoA-binding domain-containing protein 2	AT4G27780.1	acyl-CoA binding protein 2 	LOC_Os04g58550.1	"acyl-CoA-binding domain-containing protein 6, putative, expressed"	Medtr5g046490.1	Ankyrin 	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.103131.1.S1_at	A	A1TS	POPTR_0007s04700	POPTR_0007s04700 (9)	scaffold_7:2908729-2910151(+) (9)	NA	Q5PQN1	Probable E3 ubiquitin-protein ligase HERC4	AT5G63860.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g35570.1	"Regulator of chromosome condensation domain containing protein, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103190.1.S1_at	A	A1TS	POPTR_0003s06460	POPTR_0003s06460 (11)	scaffold_3:7943086-7943378(-) (11)	POPTR_0001s16800 (6)	P24465	Cytochrome P450 71A1	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.103209.1.S1_at	A	A1TS	POPTR_0018s06640	POPTR_0018s06640 (11)	scaffold_18:6683591-6685762(+) (11)	NA	Q9SGE9	Probable phenylalanyl-tRNA synthetase beta chain	AT1G72550.1	tRNA synthetase beta subunit family protein 	LOC_Os05g48510.1	"phenylalanyl-tRNA synthetase beta chain, putative, expressed"	Medtr8g115440.1	"Phenylalanyl-tRNA synthetase, beta subunit archae/euk cytosolic "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0003723|RNA binding	NA
PtpAffx.103261.1.S1_a_at	A	A1TS	POPTR_0018s06630	POPTR_0018s06630 (11)	scaffold_18:6669030-6670055(+) (11)	NA	Q9C5D7	Probable caffeoyl-CoA O-methyltransferase At4g26220	AT4G26220.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g160600.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.103262.1.S1_at	A	A1TS	POPTR_0006s19790	POPTR_0006s19790 (11)	scaffold_6:18811018-18811166(-) (11)	NA	NA	NA	AT4G30900.2	DNAse I-like superfamily protein 	LOC_Os05g19974.1	"endonuclease/exonuclease/phosphatase family protein, putative, expressed"	Medtr8g145310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10330.2.S1_a_at	A	A1TS	POPTR_0001s41970	POPTR_0001s41970 (10)	scaffold_1:41731555-41732106(-) (10)	NA	NA	NA	AT5G54470.1	B-box type zinc finger family protein 	LOC_Os08g08120.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g103200.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.10337.1.A1_at	A	A1TS	POPTR_0005s25590	POPTR_0005s25590 (11)	scaffold_5:23832986-23833410(+) (11)	NA	Q9LQZ7	Probable salt tolerance-like protein At1g75540	AT1G75540.1	salt tolerance homolog2 	LOC_Os04g45690.1	"B-box zinc finger family protein, putative, expressed"	Medtr1g028510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.103387.1.S1_at	A	A1TS	POPTR_0019s09010	POPTR_0019s09010 (11)	scaffold_19:10605791-10606278(-) (11)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os05g40200.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr5g083430.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.103401.2.S1_s_at	A	A2TS	POPTR_0005s23590	POPTR_0005s23590 (11)//POPTR_0284s00200 (11)	scaffold_284:17276-17501(+) (11)//scaffold_5:22304665-22312665(+) (11)	POPTR_0005s23580 (8)	Q94LX1	"Chlorophyllase-1, chloroplastic"	AT1G19670.1	chlorophyllase 1 	LOC_Os10g28370.1	"chlorophyllase-2, chloroplast precursor, putative, expressed"	Medtr8g096370.1	Chlorophyllase 	GO:0015996|chlorophyll catabolic process	GO:0047746|chlorophyllase activity	NA
PtpAffx.103430.1.A1_at	A	A1TS	POPTR_0001s11880	POPTR_0001s11880 (10)	scaffold_1:9212829-9213709(+) (10)	NA	Q94KB2	MLO-like protein 13	AT4G24250.1	Seven transmembrane MLO family protein 	LOC_Os05g34550.1	"MLO domain containing protein, putative, expressed"	Medtr2g034050.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.103457.1.S1_at	A	A1TS	POPTR_0001s46070	POPTR_0001s46070 (10)	scaffold_1:46557888-46558131(+) (10)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.103471.2.A1_at	A	A1MS	POPTR_0008s03990	POPTR_0008s03990 (11)	scaffold_8:2201092-2201198(+) (11)	NA	Q8VX13	Protein disulfide isomerase-like 1-3	AT3G54960.1	PDI-like 1-3 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.1035.1.A1_at	A	A1TS	POPTR_0003s20320	POPTR_0003s20320 (11)	scaffold_3:18833773-18834209(-) (11)	NA	NA	NA	AT2G16770.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os06g50310.1	"E2F-related protein, putative, expressed"	Medtr4g098490.1	Basic-leucine zipper (bZIP) transcription factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.103505.1.S1_at	A	A1TS	POPTR_0006s14610	POPTR_0006s14610 (11)	scaffold_6:11954383-11954912(+) (11)	NA	NA	NA	AT1G17455.2	ELF4-like 4 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr8g024260.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103505.2.S1_at	A	A1MS	POPTR_0006s14610	POPTR_0006s14610 (9)	scaffold_6:11953501-11954045(+) (9)	NA	NA	NA	AT1G17455.2	ELF4-like 4 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr8g024260.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103510.1.S1_at	A	A1TS	POPTR_0007s07100	POPTR_0007s07100 (10)	scaffold_7:5423862-5424192(-) (10)	NA	Q9SJ20	Ribonucleoside-diphosphate reductase large subunit	AT2G21790.1	ribonucleotide reductase 1 	LOC_Os06g07210.1	"ribonucleoside-diphosphate reductase large subunit, putative, expressed"	Medtr4g141590.1	"Ribonucleotide reductase R1 subunit, N-terminal; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0055114|oxidation reduction	GO:0005524|ATP binding||GO:0004748|ribonucleoside-diphosphate reductase activity	GO:0005971|ribonucleoside-diphosphate reductase complex
PtpAffx.103517.1.S1_at	A	A1TS	POPTR_0013s05040	POPTR_0013s05040 (10)	scaffold_13:3557548-3558753(+) (10)	NA	P52914	Nucleoside-triphosphatase	AT5G18280.1	apyrase 2 	LOC_Os03g21120.1	"nucleoside-triphosphatase, putative, expressed"	Medtr7g099940.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.103526.1.S1_at	A	A1TS	POPTR_0016s02100	POPTR_0016s02100 (11)	scaffold_16:1010630-1012008(+) (11)	NA	Q7ZUW2	Hypoxia up-regulated protein 1	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g48110.1	"DnaK family protein, putative, expressed"	Medtr3g068340.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10355.1.S1_at	A	A1TS	POPTR_0006s10720	POPTR_0006s10720 (10)	scaffold_6:8053179-8053491(-) (10)	NA	Q8K4Q0	Regulatory-associated protein of mTOR	AT3G08850.1	"HEAT repeat ;WD domain, G-beta repeat protein protein "	LOC_Os12g01922.1	"WD domain and HEAT domain containing protein, putative, expressed"	Medtr7g077750.1	WD40-like; Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10356.1.S1_at	A	A1TS	POPTR_0009s10860	POPTR_0009s10860 (11)	scaffold_9:9207953-9208480(+) (11)	NA	Q96MB7	Putative nuclease HARBI1	AT3G19120.1	PIF / Ping-Pong family of plant transposases 	LOC_Os05g51520.1	expressed protein	Medtr4g129210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103568.1.S1_s_at	A	A1TS	POPTR_0005s25630	POPTR_0005s25630 (11)	scaffold_5:23856216-23856738(-) (11)	NA	NA	NA	AT5G42480.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g03000.2	"division protein, putative, expressed"	Medtr1g028480.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103577.1.S1_at	A	A1TS	POPTR_0006s06320	POPTR_0006s06320 (11)	scaffold_6:4508302-4508725(+) (11)	NA	Q8BQS5	Adiponectin receptor protein 2	AT5G20270.1	heptahelical transmembrane protein1 	LOC_Os06g43620.1	"haemolysin-III, putative, expressed"	Medtr8g121650.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
PtpAffx.10359.1.S1_at	A	A1TS	POPTR_0015s11300	POPTR_0015s11300 (10)	scaffold_15:11901871-11902267(+) (10)	NA	Q8BMD7	MORC family CW-type zinc finger protein 4	AT5G50780.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os02g27000.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103594.1.S1_s_at	A	A1TS	POPTR_0016s02520	POPTR_0016s02520 (11)	scaffold_16:1244413-1244826(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g20350.1	conserved hypothetical protein	Medtr7g104760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103607.1.S1_at	A	A1TS	POPTR_0006s29060	POPTR_0006s29060 (10)	scaffold_6:26544988-26546328(+) (10)	POPTR_0006s28690 (7)	Q63528	Replication protein A 32 kDa subunit	AT2G24490.2	replicon protein A2 	LOC_Os02g58220.1	"RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed"	Medtr8g129120.1	"nucleic acid binding, OB-fold, tRNA/helicase-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.103616.1.S1_at	A	A1TS	POPTR_0013s11510	POPTR_0013s11510 (11)	scaffold_13:12121561-12122011(-) (11)	NA	Q9C7G4	Transcription factor TCP22	AT1G72010.1	TCP family transcription factor  	LOC_Os12g07480.1	"TCP family transcription factor, putative, expressed"	Medtr2g006520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103621.1.S1_at	A	A1TS	POPTR_0006s03080	POPTR_0006s03080 (11)	scaffold_6:1944252-1945281(-) (11)	NA	Q2HJC9	Polyglutamine-binding protein 1	AT2G41020.1	WW domain-containing protein 	LOC_Os01g68760.1	"WW domain containing protein, expressed"	Medtr6g012950.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase); WW/Rsp5/WWP "	NA	GO:0005515|protein binding	NA
PtpAffx.10363.1.S1_at	A	A1TS	POPTR_0001s08400	POPTR_0001s08400 (11)	scaffold_1:6408447-6408761(+) (11)	NA	B6YWH0	Glyoxylate reductase	AT1G12550.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os04g01674.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009260.1	"D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding "	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0048037|cofactor binding"	NA
PtpAffx.103645.1.A1_at	A	A1TS	POPTR_0013s12370	POPTR_0013s12370 (11)	scaffold_13:13000178-13000613(+) (11)	NA	Q8LPR5	Transcription factor TCP4	AT3G15030.3	TCP family transcription factor 4 	LOC_Os01g11550.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10365.1.A1_a_at	A	A2TS	POPTR_0008s16860	POPTR_0010s08030 (11)//POPTR_0008s16860 (11)	scaffold_10:8994203-8994913(-) (11)//scaffold_8:11336184-11336911(+) (11)	NA	Q5U3N0	Pleckstrin homology domain-containing family A member 8	AT2G33470.2	glycolipid transfer protein 1 	LOC_Os02g40890.2	"GLTP domain containing protein, putative, expressed"	Medtr1g090290.1	"Pleckstrin homology domain-containing family A member 8, related "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.10365.1.A1_at	A	A1TS	POPTR_0010s08030	POPTR_0010s08030 (11)	scaffold_10:8993682-8995576(-) (11)	NA	Q5U3N0	Pleckstrin homology domain-containing family A member 8	AT2G33470.2	glycolipid transfer protein 1 	LOC_Os02g40890.2	"GLTP domain containing protein, putative, expressed"	Medtr1g090290.1	"Pleckstrin homology domain-containing family A member 8, related "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.10365.2.S1_at	A	A1TS	POPTR_0008s16860	POPTR_0008s16860 (11)	scaffold_8:11335537-11337469(+) (11)	NA	Q5U3N0	Pleckstrin homology domain-containing family A member 8	AT2G33470.2	glycolipid transfer protein 1 	LOC_Os02g40890.2	"GLTP domain containing protein, putative, expressed"	Medtr1g090290.1	"Pleckstrin homology domain-containing family A member 8, related "	GO:0046836|glycolipid transport||GO:0010876|lipid localization	GO:0051861|glycolipid binding||GO:0017089|glycolipid transporter activity	GO:0005737|cytoplasm
PtpAffx.10366.1.A1_at	A	A1TS	POPTR_0015s10130	POPTR_0015s10130 (11)	scaffold_15:11151893-11161603(+) (11)	NA	Q9SWE5	Phosphopantothenoylcysteine decarboxylase	AT3G18030.1	HAL3-like protein A 	LOC_Os06g09910.2	"phosphopantothenoylcysteine decarboxylase, putative, expressed"	Medtr8g150970.1	Flavoprotein 	NA	GO:0003824|catalytic activity	NA
PtpAffx.103664.1.A1_at	A	A1TS	POPTR_0018s02280	POPTR_0018s02280 (11)	scaffold_18:2028286-2028656(+) (11)	NA	Q94AW5	Ethylene-responsive transcription factor ERF003	AT5G25190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g55380.1	"AP2 domain containing protein, expressed"	Medtr3g137990.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.103665.1.A1_s_at	A	A1TS	POPTR_0014s14050	POPTR_0014s14050 (11)	scaffold_14:10283732-10284242(-) (11)	NA	Q60HE9	Lysosomal alpha-mannosidase	AT5G13980.2	Glycosyl hydrolase family 38 protein 	LOC_Os11g32260.1	"lysosomal alpha-mannosidase precursor, putative, expressed"	Medtr3g151240.2	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0044262|cellular carbohydrate metabolic process||GO:0006013|mannose metabolic process||GO:0044281|small molecule metabolic process	GO:0008270|zinc ion binding||GO:0004559|alpha-mannosidase activity	NA
PtpAffx.103669.1.S1_at	A	A1TS	POPTR_0007s07260	POPTR_0007s07260 (10)	scaffold_7:5567712-5568341(-) (10)	NA	NA	NA	AT5G08340.1	Nucleotidylyl transferase superfamily protein 	LOC_Os03g58710.2	"riboflavin biosynthesis protein-related, putative, expressed"	Medtr1g143840.1	"riboflavin biosynthesis protein-related, putative "	GO:0009231|riboflavin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0003919|FMN adenylyltransferase activity	NA
PtpAffx.103673.1.A1_at	A	A1TS	POPTR_0006s11280	POPTR_0006s11280 (11)	scaffold_6:8568546-8569088(+) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G01980.1	RING/U-box superfamily protein 	LOC_Os12g02620.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g080710.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103704.1.A1_at	A	A1TS	POPTR_0007s03880	POPTR_0007s03880 (10)	scaffold_7:2308674-2310018(+) (10)	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.10371.2.S1_a_at	A	A2TS	POPTR_0004s20210	POPTR_0004s20210 (11)//POPTR_0009s15470 (11)	scaffold_4:19828550-19828954(-) (11)//scaffold_9:11959259-11959663(-) (11)	NA	Q8N8F6	Protein YIPF7	AT2G36300.1	Integral membrane Yip1 family protein 	LOC_Os03g17990.1	"Yip1 domain containing protein, expressed"	Medtr7g127220.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10376.1.S1_a_at	A	A2TS	POPTR_0002s23800	POPTR_0014s14270 (11)//POPTR_0002s23800 (11)	scaffold_14:10434011-10434943(-) (11)//scaffold_2:21294478-21295390(+) (11)	NA	Q9S702	"Aspartokinase 3, chloroplastic"	AT3G02020.1	aspartate kinase 3 	LOC_Os07g20544.1	"aspartokinase, chloroplast precursor, putative, expressed"	Medtr7g096930.1	Aspartate kinase region 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0016597|amino acid binding	NA
PtpAffx.10376.3.A1_at	A	A1TS	POPTR_0002s23800	POPTR_0002s23800 (10)	scaffold_2:21294444-21295860(+) (10)	NA	Q9S702	"Aspartokinase 3, chloroplastic"	AT3G02020.1	aspartate kinase 3 	LOC_Os07g20544.1	"aspartokinase, chloroplast precursor, putative, expressed"	Medtr7g096930.1	Aspartate kinase region 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0016597|amino acid binding	NA
PtpAffx.103764.1.S1_at	A	A1MS	POPTR_0005s05860	POPTR_0005s05860 (11)	scaffold_5:3825534-3826028(+) (11)	NA	Q8LST2	Probable serine/threonine-protein kinase WNK7	AT1G49160.2	Protein kinase superfamily protein 	LOC_Os02g45130.1	"protein kinase, putative, expressed"	Medtr4g142270.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.103794.1.A1_s_at	A	A1TS	POPTR_0012s03550	POPTR_0012s03550 (11)	scaffold_12:2787055-2787723(-) (11)	NA	Q9FX31	Homeobox-leucine zipper protein HDG11	AT1G73360.1	homeodomain GLABROUS 11 	LOC_Os06g10600.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.103796.1.S1_at	A	A1TS	POPTR_0004s04100	POPTR_0004s04100 (11)	scaffold_4:2943222-2945253(-) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT1G60900.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.103853.1.A1_at	A	A1TS	POPTR_0014s07310	POPTR_0014s07310 (10)	scaffold_14:5512920-5513378(-) (10)	NA	Q6ME80	Ribosomal RNA small subunit methyltransferase A	AT1G01860.1	Ribosomal RNA adenine dimethylase family protein 	LOC_Os02g03050.1	"dimethyladenosine transferase, putative, expressed"	Medtr7g083900.1	Ribosomal RNA adenine methylase transferase 	GO:0044260|cellular macromolecule metabolic process||GO:0000154|rRNA modification	"GO:0000179|""rRNA (adenine-N6,N6-)-dimethyltransferase activity"""	NA
PtpAffx.10386.1.S1_at	A	A1TS	POPTR_0018s09970	POPTR_0018s09970 (9)	scaffold_18:11018422-11020435(-) (9)	NA	Q9Y2D8	Afadin- and alpha-actinin-binding protein	AT5G57410.1	Afadin/alpha-actinin-binding protein 	LOC_Os08g14460.2	expressed protein	Medtr8g129100.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103863.1.S1_at	A	A1TS	POPTR_0004s03930	POPTR_0004s03930 (9)	scaffold_4:2792590-2792754(+) (9)	NA	Q0WUU6	Probable polyol transporter 4	AT2G20780.1	Major facilitator superfamily protein 	LOC_Os04g44750.1	"transporter family protein, putative, expressed"	Medtr2g014990.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.103875.1.S1_at	A	A2TS	POPTR_0012s11100	POPTR_0012s11150 (11)//POPTR_0012s11100 (11)	scaffold_12:11688321-11690432(-) (11)//scaffold_12:11711135-11713321(+) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G61840.1	Exostosin family protein 	LOC_Os01g70200.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.103877.1.S1_at	A	A1TS	POPTR_0003s07080	POPTR_0003s07080 (10)	scaffold_3:8686715-8687522(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g026820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103879.1.S1_at	A	A1TS	POPTR_0014s08510	POPTR_0014s08510 (10)	scaffold_14:6328745-6330006(+) (10)	NA	NA	NA	AT4G01290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 1797 Blast hits to 1352 proteins in 216 species: Archae - 0; Bacteria - 202; Metazoa - 850; Fungi - 267; Plants - 109; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink). 	LOC_Os06g01680.1	expressed protein	Medtr7g088510.1	ABC transporter related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10388.1.A1_at	A	A1TS	POPTR_0006s10220	POPTR_0006s10220 (10)	scaffold_6:7607330-7607951(-) (10)	NA	Q8W4I7	Calcium-dependent protein kinase 13	AT3G51850.1	calcium-dependent protein kinase 13 	LOC_Os01g61590.1	"CAMK_CAMK_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g006210.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103881.1.A1_at	A	A1TS	POPTR_0008s05360	POPTR_0008s05360 (11)	scaffold_8:3106846-3107664(-) (11)	NA	B9HMF8	UPF0497 membrane protein 12	AT3G55390.1	Uncharacterised protein family (UPF0497) 	LOC_Os12g38100.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g076970.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103892.1.S1_a_at	A	A1TS	POPTR_0002s24290	POPTR_0002s24290 (11)	scaffold_2:21690983-21691335(-) (11)	NA	Q8LG89	Basic blue protein	AT2G02850.1	plantacyanin 	LOC_Os03g50160.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g137630.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.103921.1.S1_at	A	A1TS	POPTR_0004s21650	POPTR_0004s21650 (10)	scaffold_4:20671831-20672396(-) (10)	NA	NA	NA	AT2G17230.1	EXORDIUM like 5 	LOC_Os06g04250.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10393.1.S1_a_at	A	A1TS	POPTR_0005s17120	POPTR_0005s17120 (11)	scaffold_5:14261372-14262163(-) (11)	NA	P93212	14-3-3 protein 7	AT1G34760.1	general regulatory factor 11 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.10393.2.S1_at	A	A1TS	POPTR_0005s17120	POPTR_0005s17120 (10)	scaffold_5:14261625-14261758(-) (10)	NA	P93212	14-3-3 protein 7	AT1G34760.1	general regulatory factor 11 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.103931.1.S1_at	A	A1TS	POPTR_0011s11640	POPTR_0011s11640 (11)	scaffold_11:14441205-14441241(+) (11)	NA	Q9FN32	Protein yippee-like At5g53940	AT5G53940.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g025460.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103932.1.S1_at	A	A1TS	POPTR_0001s23890	POPTR_0001s23890 (10)	scaffold_1:23263522-23264294(-) (10)	NA	Q9LKF9	Cleavage and polyadenylation specificity factor subunit 2	AT5G23880.1	cleavage and polyadenylation specificity factor 100 	LOC_Os09g39590.1	"metallo-beta-lactamase, putative, expressed"	Medtr1g068100.1	Beta-lactamase-like; TAP42-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.103942.1.S1_s_at	A	A1TS	POPTR_0003s16170	POPTR_0003s16170 (11)	scaffold_3:15787059-15787695(+) (11)	NA	Q5W7F2	ADP-ribosylation factor GTPase-activating protein AGD3	AT5G13300.1	ARF GTPase-activating protein 	LOC_Os09g33600.1	"ARF GTPase-activating domain-containing protein, putative, expressed"	Medtr7g020730.1	Arf GTPase activating protein; BAR; Pleckstrin homology-type 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.103958.1.S1_at	A	A1TS	POPTR_0001s35520	POPTR_0001s35520 (11)	scaffold_1:33890432-33890865(+) (11)	NA	B0F9L4	Golgin candidate 6	AT3G27530.1	golgin candidate 6 	LOC_Os12g35360.1	"vesicle tethering family protein, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0016020|membrane
PtpAffx.103965.1.S1_at	A	A1TS	POPTR_0015s01630	POPTR_0015s01630 (11)	scaffold_15:1032454-1033043(+) (11)	NA	O35685	Nuclear migration protein nudC	AT4G27890.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104019.1.A1_a_at	A	A2TS	POPTR_0006s09660	POPTR_0006s09660 (11)//POPTR_0016s11740 (11)	scaffold_16:10922889-10924194(+) (11)//scaffold_6:7101942-7103333(+) (11)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT3G54110.1	plant uncoupling mitochondrial protein 1 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104019.1.A1_at	A	A1TS	POPTR_0006s09660	POPTR_0006s09660 (11)	scaffold_6:7101913-7103477(+) (11)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT3G54110.1	plant uncoupling mitochondrial protein 1 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104019.2.A1_at	A	A1TS	POPTR_0016s11740	POPTR_0016s11740 (11)	scaffold_16:10923205-10924369(+) (11)//scaffold_588:315-634(+) (9)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT3G54110.1	plant uncoupling mitochondrial protein 1 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104039.1.S1_s_at	A	A1TS	POPTR_0006s05480	POPTR_0006s05480 (10)	scaffold_6:3877142-3877546(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10405.1.S1_x_at	A	A1TS	POPTR_0580s00210	POPTR_0580s00210 (11)	scaffold_580:8339-9094(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104058.1.S1_at	A	A1MA	POPTR_0009s17070	POPTR_0009s17070 (11)	scaffold_9:12848389-12848634(-) (11)	NA	Q9FEA2	"Glutamyl-tRNA synthetase, chloroplastic/mitochondrial"	AT5G64050.1	glutamate tRNA synthetase 	LOC_Os02g02860.1	"glutamyl-tRNA synthetase, putative, expressed"	Medtr1g103230.1	"Glutamyl-tRNA synthetase, class Ic; Glutaminyl-tRNA synthetase; Glutathione S-transferase, C-terminal-like "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.10406.1.A1_at	A	A1TS	POPTR_0018s09210	POPTR_0018s09210 (11)	scaffold_18:10085348-10085568(-) (11)	NA	Q53HY2	Ninja-family protein mc410	AT4G28910.3	novel interactor of JAZ 	LOC_Os05g48500.3	expressed protein	Medtr6g098770.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104072.1.S1_at	A	A1TS	POPTR_0001s06980	POPTR_0001s06980 (11)	scaffold_1:5335648-5336359(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G07050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr8g044450.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.104095.1.S1_at	A	A1TS	POPTR_0014s02510	POPTR_0014s02510 (10)	scaffold_14:2084161-2084443(-) (10)	NA	NA	NA	AT4G06536.1	SPla/RYanodine receptor (SPRY) domain-containing protein 	LOC_Os02g40110.1	expressed protein	Medtr3g147400.1	SPla/RYanodine receptor SPRY 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1041.1.S1_at	A	A1TS	POPTR_0013s14860	POPTR_0013s14860 (11)	scaffold_13:14957179-14957216(-) (11)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.1041.1.S1_s_at	A	A1TS	POPTR_0013s14860	POPTR_0013s14860 (11)	scaffold_13:14956847-14957077(-) (11)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.1041.2.A1_a_at	A	A1TS	POPTR_0009s11540	POPTR_0009s11540 (11)	scaffold_9:9568688-9569639(+) (11)	NA	Q9LHN4	Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5	AT3G18850.4	lysophosphatidyl acyltransferase 5 	LOC_Os01g57360.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.1041.4.S1_a_at	A	A1TS	POPTR_0010s25630	POPTR_0010s25630 (11)	scaffold_10:21217210-21217443(-) (11)	NA	Q54VZ8	Exocyst complex component 8	AT5G49830.1	exocyst complex component 84B 	LOC_Os07g10110.1	expressed protein	Medtr4g023160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104103.1.S1_at	A	A1TS	POPTR_0006s06240	POPTR_0006s06240 (11)	scaffold_6:4440658-4441094(-) (11)	NA	NA	NA	NA	NA	LOC_Os02g55920.1	expressed protein	Medtr8g121730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10412.1.A1_at	A	A1MS	POPTR_0001s24910	POPTR_0001s24910 (10)	scaffold_1:24179783-24180088(-) (10)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.104125.1.S1_at	A	A1TS	POPTR_0008s07210	POPTR_0008s07210 (9)	scaffold_8:4382672-4384034(-) (10)	NA	Q9LYN6	Probable inactive receptor-like protein kinase At3g56050	AT2G40270.2	Protein kinase family protein 	LOC_Os03g18370.1	"MRH1, putative, expressed"	Medtr1g102890.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.104155.2.S1_at	A	A1TS	POPTR_0009s09470	POPTR_0009s09470 (9)	scaffold_9:8370555-8371444(+) (9)	NA	O81760	Probable protein phosphatase 2C 63	AT4G33920.1	Protein phosphatase 2C family protein 	LOC_Os12g39120.1	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104157.1.S1_at	A	A1TS	POPTR_0008s13700	POPTR_0008s13700 (11)	scaffold_8:9013384-9013741(-) (11)	NA	Q5PNY6	U-box domain-containing protein 21	AT5G37490.1	ARM repeat superfamily protein 	LOC_Os02g50460.1	"immediate-early fungal elicitor protein CMPG1, putative, expressed"	Medtr5g085300.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.104176.1.S1_at	A	A1TS	POPTR_0009s10480	POPTR_0009s10480 (11)	scaffold_9:9005011-9005236(-) (11)	NA	P40781	Protein CYPRO4	AT3G19240.1	"Vacuolar import/degradation, Vid27-related protein "	LOC_Os02g08190.1	"CYPRO4, putative, expressed"	Medtr4g129640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104180.1.S1_at	A	A3TS	POPTR_0770s00220	POPTR_0770s00220 (11)//POPTR_0770s00200 (10)//POPTR_0010s08620 (9)	scaffold_10:9519150-9519577(-) (10)//scaffold_10:9532775-9533193(-) (10)//scaffold_770:682-6851(-) (11)//scaffold_770:6805-7227(-) (10)	NA	P19873	Inhibitor of trypsin and hageman factor	AT5G43580.1	"Serine protease inhibitor, potato inhibitor I-type family protein "	NA	NA	Medtr1g090000.1	"Proteinase inhibitor I13, potato inhibitor I "	GO:0009611|response to wounding	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.104195.1.S1_s_at	A	A1TS	POPTR_0007s10930	POPTR_0007s10930 (11)	scaffold_7:11122861-11123189(-) (11)	NA	Q01389	Serine/threonine-protein kinase BCK1/SLK1/SSP31	AT5G67080.1	mitogen-activated protein kinase kinase kinase 19 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.104205.1.A1_at	A	A1TS	POPTR_0010s22080	POPTR_0010s22080 (11)	scaffold_10:19143287-19143833(-) (11)	NA	P0CG89	Histone H4	AT5G59970.1	Histone superfamily protein 	LOC_Os10g39410.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr3g094110.1	Histone H4; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.104221.1.S1_at	A	A1TS	POPTR_0012s05560	POPTR_0012s05560 (11)	scaffold_12:5201264-5202154(+) (11)	NA	NA	NA	AT2G42780.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). "	LOC_Os08g07280.1	expressed protein	Medtr3g064530.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0016021|integral to membrane||GO:0005634|nucleus
PtpAffx.104221.2.S1_a_at	A	A1TS	POPTR_0012s05560	POPTR_0012s05560 (11)	scaffold_12:5198716-5202298(+) (11)	NA	NA	NA	AT2G42780.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). "	LOC_Os08g07280.1	expressed protein	Medtr3g064530.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0016021|integral to membrane||GO:0005634|nucleus
PtpAffx.104237.1.A1_at	A	A1TS	POPTR_0003s04490	POPTR_0003s04490 (10)	scaffold_3:5219312-5220146(+) (10)	NA	Q93Z24	Beta-galactosidase 17	AT1G72990.2	beta-galactosidase 17 	LOC_Os05g46200.2	"beta-galactosidase 8 precursor, putative, expressed"	Medtr2g121200.1	"Glycoside hydrolase, family 35 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.10425.1.S1_at	A	A1TS	POPTR_0010s13660	POPTR_0010s13660 (11)	scaffold_10:13463511-13464055(+) (11)	NA	NA	NA	AT1G68580.2	agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os08g33420.1	"agenet domain containing protein, expressed"	Medtr5g068170.1	Bromo adjacent region; Agenet 	NA	GO:0003723|RNA binding||GO:0003677|DNA binding	NA
PtpAffx.104250.1.S1_at	A	A1TS	POPTR_0010s06160	POPTR_0010s06160 (10)	scaffold_10:7584295-7585482(+) (10)	NA	O04450	T-complex protein 1 subunit epsilon	AT1G24510.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g36700.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.104298.1.S1_at	A	A3TS	POPTR_0003s01880	POPTR_0003s01880 (11)//POPTR_0003s01940 (10)//POPTR_0003s01950 (10)	scaffold_3:1754092-1754640(-) (11)//scaffold_3:1816649-1817183(-) (11)//scaffold_3:1836886-1837229(-) (10)	POPTR_0003s01920 (8)	Q4U4N4	Interferon-induced GTP-binding protein Mx2	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.104314.1.S1_s_at	A	A1TS	POPTR_0005s11110	POPTR_0005s11110 (11)	scaffold_5:8046838-8048890(-) (11)	NA	Q9ZVX8	Probable aquaporin PIP2-8	AT2G16850.1	plasma membrane intrinsic protein 2;8 	LOC_Os07g26690.1	"aquaporin protein, putative, expressed"	Medtr3g163530.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.104325.1.S1_at	A	A1TS	POPTR_0004s17740	POPTR_0004s17740 (11)	scaffold_4:17807915-17808372(-) (11)	NA	Q9LUS2	"Translocase of chloroplast 120, chloroplastic"	AT3G16620.1	translocon outer complex protein 120 	LOC_Os10g40110.1	"GTP binding protein, putative, expressed"	Medtr2g130100.1	AIG1 	NA	GO:0005525|GTP binding	NA
PtpAffx.104349.1.S1_s_at	A	A1TS	POPTR_0010s13140	POPTR_0010s13140 (11)	scaffold_10:13023376-13023703(+) (11)	NA	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400	AT1G68400.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os01g04230.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g140560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.104425.1.A1_at	A	A1TS	POPTR_0016s02870	POPTR_0016s02870 (10)	scaffold_16:1414141-1415066(-) (10)	NA	Q9Z8L2	4-alpha-glucanotransferase	AT2G40840.1	disproportionating enzyme 2 	LOC_Os07g46790.1	"4-alpha-glucanotransferase, putative, expressed"	Medtr7g105640.1	"Glycoside hydrolase, family 77 "	GO:0005975|carbohydrate metabolic process	GO:0004134|4-alpha-glucanotransferase activity	NA
PtpAffx.10445.1.S1_at	A	A1TS	POPTR_0001s04870	POPTR_0001s04870 (11)	scaffold_1:3735553-3736048(-) (11)	NA	Q9LEH3	Peroxidase 15	AT5G06720.1	peroxidase 2 	LOC_Os03g13200.1	"peroxidase precursor, putative, expressed"	Medtr7g112100.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.10446.1.S1_a_at	A	A2TS	POPTR_0001s11430	POPTR_0003s14740 (11)//POPTR_0001s11430 (11)	scaffold_1:8899077-8899344(+) (11)//scaffold_3:14743895-14744162(+) (11)	NA	P05522	Endoglucanase 1	AT1G02800.1	cellulase 2 	LOC_Os08g02220.1	"endoglucanase, putative, expressed"	Medtr3g163060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.104472.1.A1_at	A	A1TS	POPTR_0001s30890	POPTR_0001s30890 (10)	scaffold_1:29309153-29311378(+) (10)	NA	A9VHP8	Kynurenine formamidase	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104487.1.S1_at	A	A1TS	POPTR_0014s04510	POPTR_0014s04510 (11)	scaffold_14:3487226-3488648(+) (11)	NA	Q0WRJ7	"FKBP-type peptidyl-prolyl cis-trans isomerase 6, chloroplastic"	AT3G60370.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g30800.1	"immunophilin, putative, expressed"	Medtr4g092670.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.104500.1.A1_at	A	A1TS	POPTR_0009s13230	POPTR_0009s13230 (11)	scaffold_9:10578474-10579667(+) (11)	NA	Q8H110	Protein XAP5 CIRCADIAN TIMEKEEPER	AT2G21150.1	XAP5 family protein 	LOC_Os09g36480.1	"XAP5 family protein, putative, expressed"	Medtr4g157300.1	XAP5 protein 	NA	NA	GO:0005634|nucleus
PtpAffx.104502.1.S1_at	A	A1MS	POPTR_0007s05140	POPTR_0007s05140 (11)	scaffold_7:3324427-3324966(+) (11)	NA	O14327	Polyadenylate-binding protein 2	AT5G10350.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g52140.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g120660.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.104537.1.S1_at	A	A1TS	POPTR_0002s02080	POPTR_0002s02080 (9)	scaffold_2:1116815-1117646(-) (9)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT4G35030.3	Protein kinase superfamily protein 	LOC_Os03g13820.1	"protein kinase family protein, putative, expressed"	Medtr4g098500.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.104546.1.S1_at	A	A1TS	POPTR_0015s14250	POPTR_0015s14250 (10)	scaffold_15:13935270-13935503(+) (10)	NA	Q8VYR9	K(+) efflux antiporter 5	AT5G51710.2	K+ efflux antiporter 5 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr4g160810.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.104546.2.S1_s_at	A	A1TS	POPTR_0012s14240	POPTR_0012s14240 (11)	scaffold_12:14207728-14209062(+) (11)	NA	Q8VYR9	K(+) efflux antiporter 5	AT5G51710.2	K+ efflux antiporter 5 	LOC_Os06g36590.1	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr4g160810.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.104567.1.S1_at	A	A1TS	POPTR_0001s39520	POPTR_0001s39520 (11)	scaffold_1:38731960-38732432(-) (11)//scaffold_439:14670-15011(-) (10)	POPTR_0439s00200 (7)	Q9ZV88	BES1/BZR1 homolog protein 4	AT1G78700.1	BES1/BZR1 homolog 4 	LOC_Os06g35900.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr2g091180.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104568.1.S1_at	A	A1TS	POPTR_0009s14970	POPTR_0009s14970 (10)	scaffold_9:11618492-11619855(+) (10)	NA	NA	NA	AT2G27740.1	Family of unknown function (DUF662)  	LOC_Os04g33450.2	expressed protein	Medtr7g126780.1	Protein of unknown function DUF662 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104578.1.A1_at	A	A1TS	POPTR_0017s10490	POPTR_0017s10490 (10)	scaffold_17:9928795-9930913(-) (10)	POPTR_0018s09330 (7)	Q8LGU6	Cell division cycle protein 27 homolog B	AT2G20000.1	CDC27  family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104586.1.S1_at	A	A1TS	POPTR_0006s29550	POPTR_0006s29550 (11)	scaffold_6:26883556-26883988(+) (11)	NA	Q9ZQ34	Uncharacterized protein At2g24330	AT4G31080.1	Protein of unknown function (DUF2296) 	LOC_Os02g41990.2	expressed protein	Medtr3g133570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104634.1.S1_at	A	A1TS	POPTR_0015s06990	POPTR_0015s06990 (10)	scaffold_15:8052821-8052939(-) (10)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104643.1.S1_s_at	A	A1TS	POPTR_0001s11240	POPTR_0001s11240 (11)	scaffold_1:8713495-8713836(-) (11)	NA	Q9SK27	Early nodulin-like protein 1	AT1G64640.1	early nodulin-like protein 8 	LOC_Os03g02400.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr8g116560.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.104679.1.S1_at	A	A1TS	POPTR_0006s05500	POPTR_0006s05500 (9)	scaffold_6:3883115-3885088(-) (9)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10469.3.S1_a_at	A	A1TS	POPTR_0009s13700	POPTR_0009s13700 (11)	scaffold_9:10875943-10876275(+) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10469.5.A1_a_at	A	A1TS	POPTR_0004s18080	POPTR_0004s18080 (11)	scaffold_4:18101222-18101707(+) (11)	NA	Q6EP31	Rac-like GTP-binding protein 5	AT1G75840.1	RAC-like GTP binding protein 5 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr8g089410.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10469.5.A1_at	A	A1TS	POPTR_0004s18080	POPTR_0004s18080 (10)	scaffold_4:18101438-18101562(+) (10)	NA	Q6EP31	Rac-like GTP-binding protein 5	AT1G75840.1	RAC-like GTP binding protein 5 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr8g089410.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10469.7.A1_at	A	A1TS	POPTR_0001s24020	POPTR_0001s24020 (11)	scaffold_1:23424864-23425787(+) (11)	NA	O23826	125 kDa kinesin-related protein	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.10469.8.A1_a_at	A	A1TS	POPTR_0001s04140	POPTR_0001s04140 (11)	scaffold_1:3268435-3268902(-) (11)	NA	Q54S20	Mediator of RNA polymerase II transcription subunit 13	AT1G55325.2	RNA polymerase II transcription mediators 	LOC_Os05g37500.1	expressed protein	Medtr3g105710.1	Rhodopsin-like GPCR superfamily; TRAP240 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.104716.1.S1_a_at	A	A1TS	POPTR_0005s10430	POPTR_0005s10430 (11)	scaffold_5:7482965-7485640(-) (11)	NA	NA	NA	AT4G16444.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CHD5-like protein (InterPro:IPR007514); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g09840.1	expressed protein	Medtr8g088040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10474.1.S1_at	A	A1TS	POPTR_0013s02770	POPTR_0013s02770 (11)	scaffold_13:1669846-1671547(+) (11)	NA	NA	NA	AT5G27395.2	"Mitochondrial inner membrane translocase complex, subunit Tim44-related protein "	LOC_Os07g45300.1	tim44-like domain containing protein	Medtr1g098940.1	"Mitochondrial import inner membrane translocase, subunit Tim44 "	GO:0006886|intracellular protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0005744|mitochondrial inner membrane presequence translocase complex
PtpAffx.104760.1.S1_at	A	A1TS	POPTR_0002s25470	POPTR_0002s25470 (11)	scaffold_2:22539057-22540149(-) (11)	NA	Q9SVU5	GDSL esterase/lipase At4g28780	AT4G28780.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143160.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.104811.1.S1_at	A	A1TS	POPTR_0004s00750	POPTR_0004s00750 (10)	scaffold_4:326119-326409(+) (10)	POPTR_0796s00210 (6)	Q09809	Uncharacterized membrane protein C2G11.09	AT4G22120.6	ERD (early-responsive to dehydration stress) family protein 	LOC_Os01g35050.3	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g093810.1	hypothetical protein 	NA	NA	GO:0016020|membrane
PtpAffx.104839.1.S1_at	A	A1TS	POPTR_0004s15570	POPTR_0004s15570 (11)	scaffold_4:16179096-16180867(+) (11)	NA	A7SGU6	Proteasome assembly chaperone 2	AT3G18940.1	clast3-related 	LOC_Os03g55784.1	"tumor necrosis factor superfamily, member 5-induced protein 1, putative, expressed"	Medtr4g093120.1	"cell cycle-regulated protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10485.1.A1_s_at	A	A1TS	POPTR_0001s17030	POPTR_0001s17030 (11)	scaffold_1:13863206-13863925(+) (11)	NA	P55039	Developmentally-regulated GTP-binding protein 2	AT1G72660.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g28940.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10485.2.A1_a_at	A	A2TS	POPTR_0001s17030	POPTR_0001s17030 (11)//POPTR_0003s06220 (11)	scaffold_1:13859288-13860358(+) (11)//scaffold_3:7701440-7702746(-) (11)	NA	P55039	Developmentally-regulated GTP-binding protein 2	AT1G72660.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g28940.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.104857.1.S1_a_at	A	A2TS	POPTR_0006s07030	POPTR_0006s07030 (11)//POPTR_0018s13260 (11)	scaffold_18:13647834-13648089(-) (11)//scaffold_6:5069519-5069774(-) (11)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os08g12830.1	"cytidylyltransferase domain containing protein, expressed"	Medtr4g161000.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.104857.1.S1_at	A	A2TS	POPTR_0018s13260	POPTR_0018s13260 (11)//POPTR_0006s07030 (10)	scaffold_18:13647153-13647785(-) (11)//scaffold_6:5068909-5069470(-) (10)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os10g24810.1	"cytidylyltransferase domain containing protein, expressed"	Medtr4g161000.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.104857.2.S1_a_at	A	A2TS	POPTR_0006s07030	POPTR_0006s07030 (11)//POPTR_0018s13260 (11)	scaffold_18:13647877-13648089(-) (11)//scaffold_6:5069562-5069774(-) (11)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os08g12830.1	"cytidylyltransferase domain containing protein, expressed"	Medtr4g161000.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.104890.1.S1_at	A	A1TS	POPTR_0005s25130	POPTR_0005s25130 (11)	scaffold_5:23456668-23457321(-) (11)	NA	P55233	"Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic"	AT1G27680.1	ADPGLC-PPase large subunit 	LOC_Os05g50380.2	"glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed"	Medtr4g095980.1	Protein kinase; ADP-glucose pyrophosphorylase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.1049.1.A1_at	A	A1TS	POPTR_0001s22680	POPTR_0001s22680 (11)	scaffold_1:21567766-21568382(-) (11)	NA	Q40588	L-ascorbate oxidase	AT5G21105.1	Plant L-ascorbate oxidase 	LOC_Os06g37080.1	"L-ascorbate oxidase precursor, putative, expressed"	AC235679_7.1	Cupredoxin AC235679.1 17434-22822 E EGN_Mt090430 200	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.104950.1.S1_at	A	A1MS	POPTR_0002s22380	POPTR_0002s22380 (9)	scaffold_2:19088172-19088674(-) (9)	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105014.1.S1_at	A	A1TS	POPTR_0001s33460	POPTR_0001s33460 (9)	scaffold_1:31654337-31654866(-) (9)	NA	NA	NA	AT3G01990.1	ACT domain repeat 6 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr7g018130.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.105019.1.S1_at	A	A1TS	POPTR_0002s04800	POPTR_0002s04800 (10)	scaffold_2:3028221-3031601(-) (10)	NA	P26882	Peptidyl-prolyl cis-trans isomerase D	AT3G63400.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr3g136570.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.105026.1.S1_at	A	A1MS	POPTR_0014s06920	POPTR_0014s06920 (11)	scaffold_14:5215746-5217223(+) (11)	NA	Q9UT49	Poly(A) RNA polymerase cid13	AT2G45620.1	Nucleotidyltransferase family protein 	LOC_Os02g02970.1	expressed protein	Medtr2g134890.1	PAP/25A-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105037.1.A1_at	A	A1MS	POPTR_0009s12660	POPTR_0009s12660 (11)	scaffold_9:10288298-10288761(-) (11)	NA	Q9SIV5	Zinc finger CCCH domain-containing protein 19	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr3g163050.1	GYF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105045.1.S1_at	A	A1TS	POPTR_0006s29340	POPTR_0006s29340 (11)	scaffold_6:26741078-26741356(+) (11)	NA	NA	NA	AT4G31270.1	sequence-specific DNA binding transcription factors 	LOC_Os02g07800.1	"transcription factor, putative, expressed"	Medtr1g010230.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10505.1.S1_at	A	A1TS	POPTR_0013s14440	POPTR_0013s14440 (11)	scaffold_13:14624484-14624918(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10507.1.A1_at	A	A1TS	POPTR_0002s24070	POPTR_0002s24070 (11)	scaffold_2:21524516-21524874(-) (11)	NA	Q9SUI4	"Photosystem I reaction center subunit XI, chloroplastic"	AT4G12800.1	photosystem I subunit l 	LOC_Os12g23200.2	"photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed"	Medtr7g089570.1	"Photosystem I reaction centre, subunit XI PsaL "	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
PtpAffx.10507.2.S1_s_at	A	A1TS	POPTR_0014s17400	POPTR_0014s17400 (11)	scaffold_14:13538604-13539270(+) (11)	NA	Q9SUI4	"Photosystem I reaction center subunit XI, chloroplastic"	AT4G12800.1	photosystem I subunit l 	LOC_Os12g23200.2	"photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed"	Medtr7g089570.1	"Photosystem I reaction centre, subunit XI PsaL "	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
PtpAffx.105080.1.S1_s_at	A	A2TS	POPTR_0001s47580	POPTR_0011s17160 (11)//POPTR_0001s47580 (11)	scaffold_1:47714480-47716031(+) (11)//scaffold_11:18755784-18757310(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr3g016950.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105084.1.S1_at	A	A1TS	POPTR_0012s01740	POPTR_0012s01740 (11)	scaffold_12:1324079-1324487(-) (11)	NA	Q5SN75	Probable protein phosphatase 2C 8	AT1G07430.1	highly ABA-induced PP2C gene 2 	LOC_Os01g46760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g009410.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105086.1.S1_s_at	A	A1TS	POPTR_0001s11390	POPTR_0001s11390 (11)	scaffold_1:8849369-8849924(+) (11)	NA	NA	NA	AT1G14430.1	glyoxal oxidase-related protein 	LOC_Os03g15320.1	"glyoxal oxidase-related, putative, expressed"	Medtr1g028280.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105087.1.S1_at	A	A1MS	POPTR_0001s40880	POPTR_0001s40880 (11)	scaffold_1:40470148-40470629(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105099.1.A1_at	A	A1TS	POPTR_0009s02750	POPTR_0009s02750 (9)	scaffold_9:3515032-3515130(+) (9)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.105119.1.S1_at	A	A1TS	POPTR_0002s19900	POPTR_0002s19900 (11)	scaffold_2:15836119-15836937(-) (11)	NA	NA	NA	AT1G02660.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g15000.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.105133.1.S1_at	A	A1TS	POPTR_0006s13750	POPTR_0006s13750 (11)	scaffold_6:10974493-10975277(+) (11)	NA	Q40134	DNA repair protein RAD51 homolog	AT5G20850.1	RAS associated with diabetes protein 51 	LOC_Os11g40150.1	"DNA repair protein Rad51, putative, expressed"	Medtr8g133290.1	"AAA ATPase; Rad51, N-terminal "	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.105150.1.S1_at	A	A1TS	POPTR_0014s09570	POPTR_0014s09570 (10)	scaffold_14:7142671-7143592(+) (10)	NA	Q9M160	Uncharacterized protein At4g00950	AT4G00950.1	Protein of unknown function (DUF688) 	NA	NA	Medtr1g009040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105151.1.S1_s_at	A	A1TS	POPTR_0014s15610	POPTR_0014s15610 (11)	scaffold_14:11631356-11633462(+) (11)	NA	Q9SHZ3	Nucleobase-ascorbate transporter 1	AT2G05760.1	Xanthine/uracil permease family protein 	LOC_Os09g15170.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr3g109940.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.105165.1.S1_at	A	A1TS	POPTR_0013s13080	POPTR_0013s13080 (10)	scaffold_13:13660496-13660691(+) (10)	NA	NA	NA	AT3G59670.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37440.2); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os05g30340.2	expressed protein	Medtr4g128490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105170.1.S1_s_at	A	A1TS	POPTR_0014s12220	POPTR_0014s12220 (11)	scaffold_14:9031956-9032329(+) (11)	NA	Q9LXX6	Probable exocyst complex component 6	AT4G02350.1	exocyst complex component sec15B 	LOC_Os01g24950.2	"exocyst complex component 6, putative, expressed"	Medtr1g107350.1	Exocyst complex subunit Sec15-like 	GO:0006904|vesicle docking during exocytosis	NA	GO:0000145|exocyst
PtpAffx.105178.1.S1_at	A	A1TS	POPTR_0001s34160	POPTR_0001s34160 (11)	scaffold_1:32303707-32303916(+) (11)	NA	C1A3Z5	50S ribosomal protein L13	AT3G01790.2	Ribosomal protein L13 family protein 	LOC_Os08g06474.1	"ribosomal protein L13, putative"	Medtr3g106560.1	Ribosomal protein L13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.105190.1.S1_at	A	A1TS	POPTR_0009s11230	POPTR_0009s11230 (10)	scaffold_9:9395640-9396042(+) (10)	NA	Q6CMG4	Diphthamide biosynthesis protein 3	AT2G15910.2	CSL zinc finger domain-containing protein 	LOC_Os06g45070.2	"diphthamide biosynthesis protein 3, putative, expressed"	Medtr4g092880.1	"Zinc finger, DHP-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105198.1.S1_at	A	A1TS	POPTR_0005s06680	POPTR_0005s06680 (11)	scaffold_5:4482545-4484463(+) (11)	NA	Q9SS90	E3 ubiquitin-protein ligase RGLG1	AT5G63970.2	Copine (Calcium-dependent phospholipid-binding protein) family 	LOC_Os01g73000.2	"copine, putative, expressed"	Medtr3g143100.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105201.1.S1_at	A	A1TS	POPTR_0016s07150	POPTR_0016s07150 (11)	scaffold_16:4990345-4991219(+) (11)	NA	Q8CIB9	N-acetyltransferase ESCO2	AT4G31400.1	damaged DNA binding;DNA-directed DNA polymerases 	LOC_Os04g42120.1	"N-acetyltransferase ESCO2, putative, expressed"	Medtr2g123380.1	UMUC-like DNA-repair protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105210.1.S1_s_at	A	A1TS	POPTR_0006s01700	POPTR_0006s01700 (11)	scaffold_6:1043502-1043906(+) (11)	NA	Q9FMF6	"Pentatricopeptide repeat-containing protein At5g64320, mitochondrial"	AT5G64320.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g22370.1	"retrotransposon protein, putative, unclassified"	Medtr5g097270.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105212.1.S1_at	A	A1TS	POPTR_0010s05760	POPTR_0010s05760 (9)	scaffold_10:7239181-7239724(+) (9)	NA	Q9FXE4	Probable protein phosphatase 2C 14	AT1G67820.1	Protein phosphatase 2C family protein 	LOC_Os03g18150.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105219.1.S1_at	A	A1TS	POPTR_0009s09970	POPTR_0009s09970 (11)	scaffold_9:8700241-8702073(+) (11)	NA	NA	NA	AT4G34190.1	stress enhanced protein 1 	LOC_Os10g25570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105226.2.S1_s_at	A	A1TS	POPTR_0005s09520	POPTR_0005s09520 (11)	scaffold_5:6641985-6642097(+) (11)	NA	Q96499	60S ribosomal protein L44	AT4G14320.1	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.105226.3.S1_at	A	A1MS	POPTR_0005s09520	POPTR_0005s09520 (11)	scaffold_5:6641787-6641905(+) (11)	NA	Q96499	60S ribosomal protein L44	AT4G14320.1	Zinc-binding ribosomal protein family protein 	LOC_Os07g33997.1	"60S ribosomal protein L44, putative, expressed"	AC235022_14.1	Ribosomal protein L44E AC235022.1 92547-93040 F EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10525.1.S1_at	A	A1TS	POPTR_0019s03550	POPTR_0019s03550 (10)	scaffold_19:3640252-3640717(-) (10)	NA	Q80Y84	Lysine-specific demethylase 5B	AT1G08620.2	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os05g10770.1	"transcription factor jumonji, putative, expressed"	Medtr4g137840.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; Zinc finger, C5HC2-type "	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.105271.1.S1_at	A	A1TS	POPTR_0006s03080	POPTR_0006s03080 (11)	scaffold_6:1948393-1949743(-) (11)	NA	Q2HJC9	Polyglutamine-binding protein 1	AT2G41020.1	WW domain-containing protein 	LOC_Os01g68760.1	"WW domain containing protein, expressed"	Medtr6g012950.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase); WW/Rsp5/WWP "	NA	GO:0005515|protein binding	NA
PtpAffx.105282.1.S1_s_at	A	A1TS	POPTR_0002s24780	POPTR_0002s24780 (11)	scaffold_2:22047062-22047433(+) (11)	NA	NA	NA	AT3G25130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 3885 Blast hits to 2658 proteins in 280 species: Archae - 12; Bacteria - 208; Metazoa - 970; Fungi - 222; Plants - 148; Viruses - 11; Other Eukaryotes - 2314 (source: NCBI BLink). 	LOC_Os11g26990.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105300.1.S1_at	A	A1TS	POPTR_0008s05670	POPTR_0008s05670 (11)	scaffold_8:3296855-3297810(+) (11)	NA	Q8WXF0	Serine/arginine-rich splicing factor 12	AT3G13570.1	SC35-like splicing factor 30A 	LOC_Os02g15310.1	"RNA recognition motif containing protein, expressed"	Medtr5g087290.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.105317.1.S1_at	A	A1TS	POPTR_0006s29190	POPTR_0006s29190 (11)	scaffold_6:26642269-26642790(+) (11)	NA	Q8GXB7	tRNA (guanine-N(7)-)-methyltransferase	AT5G24840.1	tRNA (guanine-N-7) methyltransferase 	LOC_Os06g12990.1	"tRNA methyltransferase, putative, expressed"	Medtr3g132800.1	Putative methyltransferase 	GO:0044260|cellular macromolecule metabolic process||GO:0006400|tRNA modification	GO:0008176|tRNA (guanine-N7-)-methyltransferase activity	NA
PtpAffx.10532.1.S1_a_at	A	A1TS	POPTR_0018s11930	POPTR_0018s11930 (11)	scaffold_18:12571566-12572222(+) (11)	NA	Q2TA14	Lysosomal Pro-X carboxypeptidase	AT2G24280.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g43930.1	"OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.105331.1.S1_s_at	A	A1TS	POPTR_0003s12480	POPTR_0003s12480 (11)	scaffold_3:13042972-13043134(+) (11)	NA	Q5RBB3	RNA-binding protein NOB1	AT5G41190.1	"CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g02360.1	expressed protein	Medtr4g149620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105332.1.S1_at	A	A1TS	POPTR_0006s25380	POPTR_0006s25380 (11)	scaffold_6:23769099-23769521(+) (11)	NA	O82318	Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790	AT2G25790.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os02g02140.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr3g130450.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.105333.1.S1_at	A	A1TS	POPTR_0010s08110	POPTR_0010s08110 (9)	scaffold_10:9047740-9047891(-) (9)	NA	P42158	Casein kinase I isoform delta-like	AT3G23340.1	casein kinase I-like 10 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.105366.1.S1_s_at	A	A1TS	POPTR_0004s16530	POPTR_0004s16530 (11)	scaffold_4:16974667-16975066(+) (11)	NA	Q7FGZ2	DEAD-box ATP-dependent RNA helicase 1	AT4G15850.1	RNA helicase 1 	LOC_Os02g55260.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g085470.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.105368.1.S1_at	A	A1TS	POPTR_0004s11020	POPTR_0004s11020 (9)	scaffold_4:9626201-9626682(+) (9)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT3G30390.2	Transmembrane amino acid transporter family protein 	LOC_Os06g42720.1	"amino acid transporter, putative, expressed"	Medtr7g015680.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105370.1.S1_s_at	A	A1TS	POPTR_0005s08530	POPTR_0005s08530 (11)	scaffold_5:5935255-5937526(+) (11)	NA	Q9LV85	Protein CPR-5	AT5G64930.1	"CPR5 protein, putative "	LOC_Os02g53070.1	"HYS1, putative, expressed"	Medtr3g144950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105402.1.S1_at	A	A1TS	POPTR_0001s47440	POPTR_0001s47440 (11)	scaffold_1:47636287-47636884(-) (11)	NA	Q5SSW2	Proteasome activator complex subunit 4	AT3G13330.1	proteasome activating protein 200 	LOC_Os06g19730.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105423.1.S1_s_at	A	A1TS	POPTR_0014s11370	POPTR_0014s11370 (11)	scaffold_14:8466683-8466919(-) (11)	NA	Q93XK2	Stachyose synthase	AT4G01970.1	stachyose synthase 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr4g136550.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105443.1.S1_at	A	A1TS	POPTR_0017s02950	POPTR_0017s02950 (11)	scaffold_17:2125142-2125625(+) (11)	NA	Q9GKX6	Aldose 1-epimerase	AT3G17940.1	Galactose mutarotase-like superfamily protein 	LOC_Os10g06720.1	"aldose 1-epimerase, putative, expressed"	Medtr6g083370.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.10545.1.S1_at	A	A1TS	POPTR_0004s10360	POPTR_0004s10360 (10)	scaffold_4:8901737-8902004(-) (10)	NA	Q95245	Cytochrome b561	AT5G38630.1	cytochrome B561-1 	LOC_Os08g29520.1	"cytochrome b561, putative, expressed"	AC235674_2.2	Cytochrome b561 / ferric reductase transmembrane AC235674.1 14925-10160 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.10545.2.S1_a_at	A	A1TS	POPTR_0004s10360	POPTR_0004s10360 (11)	scaffold_4:8903577-8903623(-) (11)	NA	Q95245	Cytochrome b561	AT5G38630.1	cytochrome B561-1 	LOC_Os08g29520.1	"cytochrome b561, putative, expressed"	AC235674_2.2	Cytochrome b561 / ferric reductase transmembrane AC235674.1 14925-10160 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.105524.1.S1_at	A	A1TS	POPTR_0013s11730	POPTR_0013s11730 (11)	scaffold_13:12384927-12385411(-) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G09580.1	SNARE associated Golgi protein family 	LOC_Os03g49700.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105555.2.S1_s_at	A	A1TS	POPTR_0002s11970	POPTR_0002s11970 (11)	scaffold_2:8870381-8870851(-) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT3G03990.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g10620.3	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g023380.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105561.1.S1_s_at	A	A1TS	POPTR_0010s07230	POPTR_0010s07230 (11)	scaffold_10:8360689-8361074(+) (11)	NA	NA	NA	AT3G23980.1	BLISTER 	LOC_Os01g68380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1056.1.S1_at	A	A1TS	POPTR_0004s15270	POPTR_0004s15270 (11)	scaffold_4:15937341-15937573(+) (11)	NA	Q940H6	Serine/threonine-protein kinase SRK2E	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os03g41460.1	"CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g096830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.105618.1.S1_at	A	A1TS	POPTR_0005s23080	POPTR_0005s23080 (11)	scaffold_5:21921280-21922596(-) (11)	NA	P40983	Uncharacterized protein in xynA 3'region (Fragment)	AT1G03160.1	FZO-like 	LOC_Os05g32390.1	"FZL, putative, expressed"	Medtr1g086430.1	Dynamin; Thiamine monophosphate synthase 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.105621.1.S1_at	A	A1TS	POPTR_0006s18340	POPTR_0006s18340 (11)	scaffold_6:16729063-16729866(+) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os02g05840.1	"VIL2 protein, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105648.1.S1_at	A	A1TS	POPTR_0018s03560	POPTR_0018s03560 (11)	scaffold_18:3087756-3087793(-) (11)	NA	Q9SV21	Coatomer subunit beta-1	AT4G31480.2	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138720.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
PtpAffx.105648.1.S1_s_at	A	A1TS	POPTR_0018s03560	POPTR_0018s03560 (10)	scaffold_18:3086872-3087810(-) (10)	NA	Q9SV21	Coatomer subunit beta-1	AT4G31480.2	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138720.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
PtpAffx.105665.1.S1_at	A	A1TS	POPTR_0001s38700	POPTR_0001s38700 (9)	scaffold_1:37878552-37879040(+) (9)	NA	Q54WR5	Coiled-coil domain-containing protein 94 homolog	AT1G17130.1	Family of unknown function (DUF572)  	LOC_Os01g40610.1	"coiled-coil domain-containing protein, putative, expressed"	Medtr8g008480.1	Protein of unknown function DUF572 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105684.1.S1_at	A	A1TS	POPTR_0015s14650	POPTR_0015s14650 (11)	scaffold_15:14171420-14171946(-) (11)	NA	Q6GLP4	Protein RMD5 homolog A	AT4G37880.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os06g38940.2	"RMD5 homolog A, putative, expressed"	Medtr8g078780.1	"Zinc finger, RING-type; Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105685.1.S1_at	A	A1MS	POPTR_0014s02990	POPTR_0014s02990 (9)	scaffold_14:2452191-2452685(-) (9)	NA	NA	NA	AT4G33350.1	Tic22-like family protein 	LOC_Os06g11020.1	"tic22-like family domain containing protein, expressed"	Medtr3g147870.1	Tic22-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105744.2.S1_at	A	A1TS	POPTR_0003s06890	POPTR_0003s06890 (9)	scaffold_3:8430481-8431792(-) (9)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105744.3.A1_at	A	A1MS	POPTR_0001s16420	POPTR_0001s16420 (11)	scaffold_1:13218426-13218538(+) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105756.1.S1_at	A	A1TS	POPTR_0001s25590	POPTR_0001s25590 (10)	scaffold_1:24667129-24667654(+) (10)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105772.1.S1_at	A	A1TS	POPTR_0018s13160	POPTR_0018s13160 (9)	scaffold_18:13602672-13602793(+) (9)	NA	NA	NA	AT2G26670.1	Plant haem oxygenase (decyclizing) family protein 	LOC_Os06g40080.1	"heme oxygenase 1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1058.1.S1_a_at	A	A1TS	POPTR_0014s15650	POPTR_0014s15650 (11)	scaffold_14:11663771-11663909(-) (11)	NA	Q9FLP6	Small ubiquitin-related modifier 2	AT5G55160.1	small ubiquitin-like modifier 2 	LOC_Os01g68950.1	"ubiquitin family domain containing protein, expressed"	AC225519_6.1	Ubiquitin; Inorganic pyrophosphatase AC225519.5 35386-39197 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1058.3.S1_a_at	A	A1TS	POPTR_0018s13700	POPTR_0018s13700 (11)	scaffold_18:13986578-13986741(+) (11)	NA	Q9LHP1	60S ribosomal protein L7-4	AT3G13580.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.1058.3.S1_s_at	A	A1TS	POPTR_0018s13700	POPTR_0018s13700 (11)	scaffold_18:13986148-13986495(+) (11)	NA	Q9LHP1	60S ribosomal protein L7-4	AT3G13580.1	Ribosomal protein L30/L7 family protein 	LOC_Os04g51630.2	"60S ribosomal protein L7, putative, expressed"	Medtr2g043000.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.1058.4.S1_s_at	A	A3TS	POPTR_0002s21680	POPTR_0014s15650 (11)//POPTR_0002s21680 (11)//POPTR_0002s21690 (10)	scaffold_14:11663994-11665206(-) (11)//scaffold_2:18230898-18232061(-) (11)//scaffold_2:18241782-18242891(-) (10)	NA	Q9FLP6	Small ubiquitin-related modifier 2	AT5G55160.1	small ubiquitin-like modifier 2 	LOC_Os01g68950.1	"ubiquitin family domain containing protein, expressed"	AC225519_6.1	Ubiquitin; Inorganic pyrophosphatase AC225519.5 35386-39197 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105803.1.A1_at	A	A1TA	POPTR_0012s14890	POPTR_0012s14890 (11)	scaffold_12:14606584-14607119(-) (11)	NA	Q5S2C4	Protein NAP1	AT2G35110.1	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105803.2.S1_a_at	A	A1TS	POPTR_0012s14890	POPTR_0012s14890 (11)	scaffold_12:14606805-14607265(+) (11)	NA	Q5S2C4	Protein NAP1	AT2G35110.1	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105803.4.A1_at	A	A2TA	POPTR_0015s15040	POPTR_0015s15040 (11)//POPTR_0015s15090 (11)	scaffold_15:14408148-14408681(-) (11)//scaffold_15:14461616-14462149(-) (11)	POPTR_0012s14890 (6)	Q5S2C4	Protein NAP1	AT2G35110.2	transcription activators 	LOC_Os08g43130.1	"NAP1, putative, expressed"	Medtr4g114430.1	"Probable protein NAP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10586.1.S1_at	A	A1TS	POPTR_0001s03620	POPTR_0001s03620 (9)	scaffold_1:2880247-2880720(-) (9)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os02g08440.1	"OsWRKY71 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g022070.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.10586.2.S1_at	A	A1TS	POPTR_0003s18060	POPTR_0003s18060 (11)	scaffold_3:17276758-17277275(+) (11)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os09g25060.1	"OsWRKY76 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g022070.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.105861.1.A1_at	A	A1TS	POPTR_0011s12020	POPTR_0011s12020 (11)	scaffold_11:14805722-14807190(+) (11)	NA	Q9LJR3	Protein SPA1-RELATED 3	AT3G15354.1	SPA1-related 3 	LOC_Os01g52640.3	"suppressor of phythchrome A, putative, expressed"	Medtr2g100630.1	Protein kinase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105870.1.S1_at	A	A1TS	POPTR_0004s23930	POPTR_0004s23930 (11)	scaffold_4:22548836-22549096(+) (11)	NA	P69834	"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic"	AT2G02500.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os01g66360.1	"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed"	NA	NA	GO:0008299|isoprenoid biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.105870.1.S1_s_at	A	A1TS	POPTR_0004s23930	POPTR_0004s23930 (11)	scaffold_4:22549222-22551855(+) (11)	NA	P69834	"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic"	AT2G02500.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os01g66360.1	"2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, putative, expressed"	NA	NA	GO:0008299|isoprenoid biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.105916.1.S1_at	A	A1TS	POPTR_0001s34770	POPTR_0001s34770 (11)	scaffold_1:33014544-33014934(+) (11)	NA	Q16706	Alpha-mannosidase 2	AT5G14950.1	golgi alpha-mannosidase II 	LOC_Os06g13650.2	"alpha-mannosidase 2, putative, expressed"	Medtr6g009490.1	"Glycoside hydrolase, family 38; Galactose mutarotase-like; "	GO:0005975|carbohydrate metabolic process	GO:0004559|alpha-mannosidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.105922.1.A1_at	A	A1TS	POPTR_0003s10840	POPTR_0003s10840 (10)	scaffold_3:11701404-11701962(-) (10)	NA	Q5R8W6	Luc7-like protein 3	AT5G51410.3	LUC7 N_terminus domain-containing protein 	LOC_Os07g27300.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105933.1.S1_at	A	A1TS	POPTR_0001s17020	POPTR_0001s17020 (10)	scaffold_1:13856628-13857424(+) (10)	NA	NA	NA	AT1G72650.2	TRF-like 6 	LOC_Os02g53670.1	"MYB family transcription factor, putative, expressed"	Medtr8g024240.1	Small GTP-binding protein domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105957.1.S1_s_at	A	A3TS	POPTR_0018s13570	POPTR_0018s13580 (11)//POPTR_0018s13570 (11)//POPTR_0006s07150 (10)	scaffold_18:13853143-13854197(-) (11)//scaffold_18:13858256-13859305(-) (11)//scaffold_6:5135217-5136150(-) (10)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10597.1.A1_at	A	A1MS	POPTR_0018s05160	POPTR_0018s05160 (10)	scaffold_18:4661053-4661666(-) (11)	NA	Q9SZI6	Putative GATA transcription factor 22	AT4G26150.1	cytokinin-responsive gata factor 1 	LOC_Os06g37450.1	"GATA zinc finger domain containing protein, expressed"	Medtr2g045320.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.10597.2.S1_at	A	A1TS	POPTR_0006s24560	POPTR_0006s24560 (10)	scaffold_6:23149526-23149829(+) (10)	NA	Q9SZI6	Putative GATA transcription factor 22	AT4G26150.1	cytokinin-responsive gata factor 1 	LOC_Os06g37450.1	"GATA zinc finger domain containing protein, expressed"	Medtr2g045320.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.105974.1.A1_at	A	A1TA	POPTR_0010s14030	POPTR_0010s14030 (11)	scaffold_10:13737108-13737586(-) (11)	NA	A0AQW4	Transcription factor TCP12	AT1G68800.1	TCP domain protein 12 	LOC_Os03g49880.1	"TCP family transcription factor, putative, expressed"	AC233675_3.1	TCP transcription factor AC233675.1 11574-12645 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105974.1.S1_s_at	A	A1TS	POPTR_0010s14030	POPTR_0010s14030 (11)	scaffold_10:13737573-13738025(+) (11)	NA	A0AQW4	Transcription factor TCP12	AT1G68800.1	TCP domain protein 12 	LOC_Os03g49880.1	"TCP family transcription factor, putative, expressed"	AC233675_3.1	TCP transcription factor AC233675.1 11574-12645 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.105995.1.S1_s_at	A	A2TS	POPTR_0002s01050	POPTR_0005s27320 (11)//POPTR_0002s01050 (11)	scaffold_2:550306-551945(+) (11)//scaffold_5:25023916-25025532(-) (11)	NA	P56941	Niemann-Pick C1 protein	AT1G42470.1	Patched family protein 	LOC_Os04g47590.1	"niemann-Pick C1 protein precursor, putative, expressed"	Medtr5g106700.1	Sterol-sensing 5TM box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1060.1.A1_at	A	A1TS	POPTR_0001s24900	POPTR_0001s24900 (11)	scaffold_1:24178474-24179163(+) (11)	NA	Q9ES53	Ubiquitin fusion degradation protein 1 homolog	AT2G29070.2	Ubiquitin fusion degradation UFD1 family protein 	LOC_Os02g08480.1	"ubiquitin fusion degradation protein, putative, expressed"	Medtr4g157140.1	Ubiquitin fusion degradation protein UFD1 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.106009.1.S1_at	A	A1TS	POPTR_0001s40530	POPTR_0001s40530 (10)	scaffold_1:39984651-39987159(-) (11)	NA	Q8L7H1	F-box/LRR-repeat protein At4g14103	AT4G14103.1	F-box/RNI-like superfamily protein 	LOC_Os01g52980.1	"OsFBX23 - F-box domain containing protein, expressed"	Medtr8g021310.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10601.1.A1_at	A	A1MS	POPTR_0011s02610	POPTR_0011s02610 (11)	scaffold_11:2514753-2515153(-) (11)	NA	P51373	Uncharacterized protein ycf23	NA	NA	LOC_Os05g49060.1	"uncharacterized protein ycf23, putative, expressed"	Medtr4g165580.1	Ribulose-phosphate binding barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106020.1.S1_s_at	A	A1TS	POPTR_0011s05260	POPTR_0011s05260 (11)	scaffold_11:5140177-5142215(+) (11)	NA	Q9M0Y8	Vesicle-fusing ATPase	AT4G04910.1	AAA-type ATPase family protein 	LOC_Os05g44310.1	"vesicle-fusing ATPase, putative, expressed"	AC233659_3.1	AAA ATPase AC233659.1 11110-14927 E EGN_Mt090430 200	NA	GO:0005524|ATP binding	NA
PtpAffx.10604.1.A1_s_at	A	A2TS	POPTR_0001s12930	POPTR_0003s16030 (11)//POPTR_0001s12930 (11)	scaffold_1:10023898-10024411(-) (11)//scaffold_3:15654309-15654807(-) (11)	NA	A0LTY8	Transaldolase	AT5G13420.1	Aldolase-type TIM barrel family protein 	LOC_Os01g70170.1	"transaldolase, putative, expressed"	Medtr7g006100.1	Transaldolase subfamily; 	GO:0005975|carbohydrate metabolic process	NA	NA
PtpAffx.10604.2.S1_at	A	A1TS	POPTR_0007s13920	POPTR_0007s13920 (11)	scaffold_7:13920631-13920727(-) (11)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.10604.2.S1_s_at	A	A1TS	POPTR_0007s13920	POPTR_0007s13920 (11)	scaffold_7:13920761-13921723(-) (11)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.10604.4.A1_at	A	A1TA	POPTR_0001s05740	POPTR_0001s05740 (11)	scaffold_1:4420606-4420687(-) (11)//scaffold_1:4434848-4434929(-) (11)//scaffold_1:4470701-4470782(-) (11)	POPTR_0003s20330 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.10604.5.A1_at	A	A1MS	POPTR_0003s16030	POPTR_0003s16030 (11)	scaffold_3:15654505-15654684(-) (11)	NA	A9WT40	Transaldolase	AT5G13420.1	Aldolase-type TIM barrel family protein 	LOC_Os01g70170.1	"transaldolase, putative, expressed"	Medtr7g006100.1	Transaldolase subfamily; 	GO:0005975|carbohydrate metabolic process	NA	NA
PtpAffx.10604.6.A1_at	A	A1TS	POPTR_0001s12930	POPTR_0001s12930 (11)	scaffold_1:10023690-10024024(-) (11)	NA	A0LTY8	Transaldolase	AT5G13420.1	Aldolase-type TIM barrel family protein 	LOC_Os01g70170.1	"transaldolase, putative, expressed"	Medtr7g006100.1	Transaldolase subfamily; 	GO:0005975|carbohydrate metabolic process	NA	NA
PtpAffx.106060.2.A1_a_at	A	A1MS	POPTR_0013s06470	POPTR_0013s06470 (11)	scaffold_13:5054576-5054742(-) (11)	NA	O14981	TATA-binding protein-associated factor 172	AT3G54280.1	DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases 	LOC_Os02g06592.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr4g041710.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.1061.1.A1_s_at	A	A1TS	POPTR_0019s08640	POPTR_0019s08640 (11)	scaffold_19:10176812-10177781(+) (11)	NA	NA	NA	AT5G05240.1	Uncharacterised conserved protein (UCP030365) 	LOC_Os02g03940.1	expressed protein	Medtr1g008510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106123.1.A1_at	A	A1TS	POPTR_0018s00280	POPTR_0018s00280 (10)	scaffold_18:186492-188425(-) (10)	NA	NA	NA	AT5G11600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g51754.1	expressed protein	Medtr1g007400.1	"Contains a weak similarity to Rap8, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106123.2.A1_at	A	A1MS	POPTR_0018s00280	POPTR_0018s00280 (9)	scaffold_18:186064-186609(-) (11)	NA	NA	NA	AT5G11600.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g51754.1	expressed protein	Medtr1g007400.1	"Contains a weak similarity to Rap8, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106132.1.S1_at	A	A1TS	POPTR_0003s04060	POPTR_0003s04060 (10)	scaffold_3:4695894-4696074(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106133.1.S1_s_at	A	A1TS	POPTR_0017s02820	POPTR_0017s02820 (11)	scaffold_17:2026196-2026627(+) (11)	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os03g12250.1	"atypical receptor-like kinase MARK, putative, expressed"	Medtr5g085840.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.106139.2.A1_s_at	A	A1TS	POPTR_0006s09260	POPTR_0006s09260 (11)	scaffold_6:6807480-6809098(-) (11)	NA	Q8LG95	Pentatricopeptide repeat-containing protein At4g21190	AT1G04590.1	BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G21190.1); Has 111 Blast hits to 111 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os12g02950.1	"EMB2748, putative, expressed"	Medtr5g012280.1	"pentatricopeptide repeat-containing protein {Ara, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10616.1.S1_a_at	A	A2TS	POPTR_0002s06060	POPTR_0002s06060 (11)//POPTR_0005s22380 (11)	scaffold_2:4042000-4042043(+) (11)//scaffold_5:21335561-21335604(-) (11)	NA	Q9XGA1	Ribose-phosphate pyrophosphokinase 4	AT2G42910.1	Phosphoribosyltransferase family protein 	LOC_Os02g48390.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g083370.1	Ribose-phosphate pyrophosphokinase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.10616.1.S1_at	A	A1MS	POPTR_0002s06060	POPTR_0002s06060 (9)	scaffold_2:4041829-4042372(+) (9)	NA	Q9XGA1	Ribose-phosphate pyrophosphokinase 4	AT2G42910.1	Phosphoribosyltransferase family protein 	LOC_Os02g48390.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g083370.1	Ribose-phosphate pyrophosphokinase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.10616.2.S1_a_at	A	A1TS	POPTR_0005s22380	POPTR_0005s22380 (11)	scaffold_5:21335359-21335571(-) (11)	NA	Q9XGA1	Ribose-phosphate pyrophosphokinase 4	AT2G42910.1	Phosphoribosyltransferase family protein 	LOC_Os02g48390.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g083370.1	Ribose-phosphate pyrophosphokinase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.10616.2.S1_at	A	A1TS	POPTR_0005s22380	POPTR_0005s22380 (11)	scaffold_5:21335195-21335767(-) (11)	NA	Q9XGA1	Ribose-phosphate pyrophosphokinase 4	AT2G42910.1	Phosphoribosyltransferase family protein 	LOC_Os02g48390.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g083370.1	Ribose-phosphate pyrophosphokinase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.106163.1.A1_at	A	A1TS	POPTR_0003s19550	POPTR_0003s19550 (9)	scaffold_3:18245470-18248303(-) (11)	NA	NA	NA	AT5G12330.4	Lateral root primordium (LRP) protein-related 	LOC_Os01g72490.2	"LRP1, putative, expressed"	Medtr8g042820.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106168.1.S1_at	A	A1TS	POPTR_0003s12670	POPTR_0003s12670 (10)	scaffold_3:13185121-13186167(+) (10)	NA	P41230	Lysine-specific demethylase 5C	AT1G63490.1	transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	Medtr5g010400.1	"transcription factor jumonji, related "	NA	NA	GO:0005634|nucleus
PtpAffx.106173.1.S1_s_at	A	A4TS	POPTR_0002s07480	POPTR_0487s00210 (11)//POPTR_0487s00230 (11)//POPTR_0002s07500 (11)//POPTR_0002s07480 (11)	scaffold_2:5110595-5110702(+) (11)//scaffold_2:5122742-5122849(+) (11)//scaffold_487:4983-5090(+) (11)//scaffold_487:13551-13658(+) (11)	NA	NA	NA	AT1G31130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 246 Blast hits to 244 proteins in 29 species: Archae - 2; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 222; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os08g01590.2	expressed protein	Medtr4g165710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106177.1.S1_at	A	A1MS	POPTR_0005s28130	POPTR_0005s28130 (10)	scaffold_5:25488239-25488974(-) (10)	NA	Q2UMH3	"Histone-lysine N-methyltransferase, H3 lysine-4 specific"	AT5G42400.1	SET domain protein 25 	LOC_Os12g41900.1	"SET domain containing protein, expressed"	Medtr4g089540.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106193.1.S1_s_at	A	A1TS	POPTR_0018s11150	POPTR_0018s11150 (11)	scaffold_18:11934772-11934999(-) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106193.2.S1_at	A	A1TS	POPTR_0006s19380	POPTR_0006s19380 (11)	scaffold_6:18426704-18426757(-) (11)	NA	O15818	Protein KIAA0664 homolog	AT4G28080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g55230.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	Medtr4g005750.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106200.1.S1_s_at	A	A1TS	POPTR_0017s12210	POPTR_0017s12210 (11)	scaffold_17:12392614-12392849(+) (11)	NA	O04017	Protein CUP-SHAPED COTYLEDON 2	AT5G61430.1	NAC domain containing protein 100 	LOC_Os04g38720.1	"no apical meristem protein, putative, expressed"	Medtr6g013180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.106214.1.A1_at	A	A1MS	POPTR_0006s08310	POPTR_0006s08310 (10)	scaffold_6:6046706-6047178(+) (10)	NA	P45482	Cell division protein ftsZ	AT3G52750.1	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.106228.1.A1_at	A	A1TS	POPTR_0004s11550	POPTR_0004s11550 (11)	scaffold_4:10343025-10343339(+) (11)	NA	Q9FVW3	Probable esterase At1g33990	AT3G29770.1	methyl esterase 11 	LOC_Os07g41230.1	"esterase, putative, expressed"	Medtr3g012890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106236.1.S1_s_at	A	A1TS	POPTR_0001s31270	POPTR_0001s31270 (11)	scaffold_1:29603790-29605833(+) (11)	NA	Q31R08	GTP-binding protein lepA	AT5G08650.1	Small GTP-binding protein 	LOC_Os02g06300.1	"GTP-binding protein lepA, putative, expressed"	Medtr7g009110.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.106238.1.A1_at	A	A1TS	POPTR_0012s07180	POPTR_0012s07180 (11)	scaffold_12:7963601-7964576(+) (11)	NA	Q9ZPC0	"Isochorismate synthase, chloroplastic"	AT1G18870.1	isochorismate synthase 2 	LOC_Os09g19734.1	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr4g104110.1	Anthranilate synthase component I and chorismate binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106245.1.A1_at	A	A1TS	POPTR_0016s05660	POPTR_0016s05660 (11)	scaffold_16:3588710-3589150(-) (11)	NA	NA	NA	AT3G57400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52500.1); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106267.1.A1_at	A	A1TS	POPTR_0001s04370	POPTR_0001s04370 (10)	scaffold_1:3473684-3474007(+) (10)	NA	Q8KBY0	Acetyl-coenzyme A synthetase	AT1G55320.1	acyl-activating enzyme 18 	LOC_Os03g59080.1	"AMP-binding enzyme, putative, expressed"	Medtr4g134030.1	"AMP-dependent synthetase and ligase; Legume lectin, alpha "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.106286.1.S1_at	A	A1TS	POPTR_0002s25280	POPTR_0002s25280 (11)	scaffold_2:22401531-22402426(+) (11)	NA	NA	NA	AT5G48470.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os11g23790.2	expressed protein	Medtr1g008560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106356.1.S1_s_at	A	A1TS	POPTR_0005s15830	POPTR_0005s15830 (11)	scaffold_5:12449815-12450340(+) (11)	NA	Q9SFE4	Ethylene-responsive transcription factor ERF012	AT1G21910.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g10780.1	"AP2 domain containing protein, expressed"	Medtr5g065700.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.106389.1.A1_at	A	A2TS	POPTR_0005s11980	POPTR_0007s13680 (11)//POPTR_0005s11980 (11)	scaffold_5:8761940-8762245(-) (11)//scaffold_7:13700899-13701204(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT5G66330.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g43250.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g021240.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.1064.1.A1_at	A	A1TS	POPTR_0003s07070	POPTR_0003s07070 (11)	scaffold_3:8684772-8685352(+) (11)	NA	Q9SHI7	Ubiquitin-conjugating enzyme E2 34	AT1G17280.2	ubiquitin-conjugating enzyme 34 	LOC_Os06g09330.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr8g026810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.106423.1.A1_s_at	A	A1TS	POPTR_0009s11860	POPTR_0009s11860 (11)	scaffold_9:9766574-9767040(-) (11)	NA	NA	NA	AT1G75180.3	Erythronate-4-phosphate dehydrogenase family protein 	LOC_Os03g56420.1	expressed protein	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106438.1.A1_at	A	A1TS	POPTR_0008s07210	POPTR_0008s07210 (11)	scaffold_8:4379608-4379973(-) (11)	NA	Q9LYN6	Probable inactive receptor-like protein kinase At3g56050	AT2G40270.2	Protein kinase family protein 	LOC_Os03g18370.1	"MRH1, putative, expressed"	Medtr1g102890.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.106448.1.A1_s_at	A	A1TS	POPTR_0014s12360	POPTR_0014s12360 (11)	scaffold_14:9127655-9127842(+) (11)	NA	Q99685	Monoglyceride lipase	AT3G62860.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g29974.1	"lipase, putative, expressed"	Medtr8g068300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106463.1.A1_at	A	A1TS	POPTR_0006s19810	POPTR_0006s19810 (11)	scaffold_6:18825500-18827118(-) (11)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
PtpAffx.10648.1.S1_s_at	A	A2TS	POPTR_0005s02390	POPTR_0013s01620 (11)//POPTR_0005s02390 (11)	scaffold_13:916492-917781(+) (11)//scaffold_5:1541276-1542527(+) (11)	NA	Q9M9W3	Serine/threonine-protein phosphatase PP1 isozyme 9	AT5G27840.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g24750.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g138660.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.10648.2.S1_a_at	A	A1TS	POPTR_0005s02390	POPTR_0005s02390 (11)	scaffold_5:1543598-1543960(+) (11)	NA	Q9M9W3	Serine/threonine-protein phosphatase PP1 isozyme 9	AT5G27840.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g24750.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g138660.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.106502.1.A1_s_at	A	A1TS	POPTR_0002s25030	POPTR_0002s25030 (9)	scaffold_2:22233870-22234095(-) (9)	NA	Q11066	Uncharacterized HIT-like protein Rv1262c/MT1300	AT5G48545.1	histidine triad nucleotide-binding 3 	LOC_Os11g18990.1	"histidine triad family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10652.1.S1_at	A	A1TS	POPTR_0009s11870	POPTR_0009s11870 (10)	scaffold_9:9776759-9779065(-) (10)	NA	NA	NA	AT4G39300.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g095570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106520.1.A1_at	A	A1TS	POPTR_0003s21820	POPTR_0003s21820 (11)	scaffold_3:19837986-19839208(+) (11)	NA	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10658.1.S1_at	A	A1TS	POPTR_0001s34900	POPTR_0001s34900 (10)	scaffold_1:33123780-33124854(-) (10)	NA	NA	NA	AT5G59710.1	VIRE2 interacting protein 2 	LOC_Os03g52594.3	"CCR4-NOT transcription factor, putative, expressed"	Medtr2g114150.1	NOT2/NOT3/NOT5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.1066.10.S1_a_at	A	A2TS	POPTR_0012s14780	POPTR_0012s14780 (11)//POPTR_0015s14960 (11)	scaffold_12:14529042-14529593(+) (11)//scaffold_15:14356491-14357048(+) (11)	NA	Q93Y22	Coatomer subunit delta	AT5G05010.2	clathrin adaptor complexes medium subunit family protein 	LOC_Os05g24601.1	"coatomer subunit delta, putative, expressed"	Medtr2g122280.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.1066.11.S1_at	A	A1TA	POPTR_0004s03160	POPTR_0004s03160 (11)	scaffold_4:2129790-2130266(+) (11)	NA	Q41932	"Oxygen-evolving enhancer protein 3-2, chloroplastic"	AT4G05180.1	photosystem II subunit Q-2 	LOC_Os07g36080.1	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.1066.2.S1_a_at	A	A1TS	POPTR_0016s10780	POPTR_0016s10780 (11)	scaffold_16:9145147-9145253(-) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.1066.5.A1_x_at	A	A1TS	POPTR_0017s14100	POPTR_0017s14100 (11)	scaffold_17:14276976-14277719(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106600.1.S1_at	A	A1TS	POPTR_0001s24130	POPTR_0001s24130 (9)	scaffold_1:23503654-23503863(-) (9)	NA	O54922	Exocyst complex component 7	AT3G09520.1	exocyst subunit exo70 family protein H4 	LOC_Os09g26820.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr4g079170.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.10663.1.A1_a_at	A	A1TS	POPTR_0009s09640	POPTR_0009s09640 (11)	scaffold_9:8482420-8482670(-) (11)	NA	NA	NA	AT2G15000.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 70 Blast hits to 70 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10663.2.S1_a_at	A	A1TS	POPTR_0001s30600	POPTR_0001s30600 (11)	scaffold_1:29081997-29083550(-) (11)	NA	NA	NA	AT2G15000.5	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34265.2); Has 80 Blast hits to 80 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106631.1.S1_at	A	A1MS	POPTR_0002s23140	POPTR_0002s23140 (9)	scaffold_2:20558378-20561523(-) (9)	NA	Q0WMN5	Uncharacterized protein At3g49135	AT3G59300.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g67370.1	expressed protein	Medtr5g097250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10664.1.S1_at	A	A1TS	POPTR_0017s04290	POPTR_0017s04290 (11)	scaffold_17:3311996-3313675(-) (11)	NA	Q40532	Mitogen-activated protein kinase homolog NTF4	AT2G43790.1	MAP kinase 6 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g128260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10664.1.S1_s_at	A	A2TS	POPTR_0007s00930	POPTR_0017s04290 (11)//POPTR_0007s00930 (11)	scaffold_17:3311922-3314211(-) (11)//scaffold_7:494842-497158(-) (11)	NA	Q40532	Mitogen-activated protein kinase homolog NTF4	AT2G43790.1	MAP kinase 6 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g128260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10664.2.S1_at	A	A1TS	POPTR_0006s24440	POPTR_0006s24440 (11)	scaffold_6:23050560-23051118(-) (11)	NA	Q84KI6	"UDP-sulfoquinovose synthase, chloroplastic"	AT4G33030.1	sulfoquinovosyldiacylglycerol 1 	LOC_Os05g32140.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr7g107550.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.106656.1.S1_at	A	A1TS	POPTR_0013s11820	POPTR_0013s11820 (11)	scaffold_13:12460841-12462386(-) (11)	NA	Q949X3	"Histidinol-phosphate aminotransferase, chloroplastic"	AT1G71920.1	HISTIDINE BIOSYNTHESIS 6B 	LOC_Os02g47940.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr3g097770.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.10666.1.S1_at	A	A1TS	POPTR_0009s13410	POPTR_0009s13410 (11)	scaffold_9:10669958-10670362(+) (11)	NA	Q9LSS3	tRNA-splicing endonuclease subunit Sen2-2	AT5G60230.2	splicing endonuclease 2 	LOC_Os11g38930.1	"tRNA-splicing endonuclease subunit Sen2, putative, expressed"	Medtr7g111160.1	"tRNA intron endonuclease, catalytic C-terminal "	"GO:0044260|cellular macromolecule metabolic process||GO:0006388|""tRNA splicing, via endonucleolytic cleavage and ligation"""	GO:0000213|tRNA-intron endonuclease activity	NA
PtpAffx.106733.1.A1_at	A	A1TS	POPTR_0002s05880	POPTR_0002s05880 (9)	scaffold_2:3860443-3861410(+) (11)	NA	Q9SHJ8	3-hydroxyisobutyryl-CoA hydrolase-like protein 5	AT1G06550.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os01g54860.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.106779.1.S1_at	A	A1TS	POPTR_0014s08440	POPTR_0014s08440 (11)	scaffold_14:6270854-6271312(-) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1068.1.A1_at	A	A1TS	POPTR_0015s11960	POPTR_0015s11960 (9)	scaffold_15:12428483-12429135(-) (11)	NA	Q67YC9	Uncharacterized protein At4g14100	AT3G23760.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). "	LOC_Os07g09150.1	expressed protein	Medtr3g151440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10684.1.S1_s_at	A	A1TS	POPTR_0008s01960	POPTR_0008s01960 (11)	scaffold_8:938766-938840(+) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr4g066990.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.106851.1.S1_at	A	A1TS	POPTR_0002s16630	POPTR_0002s16630 (10)	scaffold_2:12445518-12446784(+) (10)	NA	Q5RBU2	"39S ribosomal protein L46, mitochondrial"	AT1G14620.1	decoy 	LOC_Os06g19640.1	"39S ribosomal protein L46, mitochondrial precursor, putative, expressed"	Medtr4g135760.1	"39S ribosomal protein L46, mitochondrial precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10687.1.S1_at	A	A1TS	POPTR_0007s02630	POPTR_0007s02630 (11)	scaffold_7:1549464-1550825(+) (11)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106872.1.A1_at	A	A1TS	POPTR_0002s11300	POPTR_0002s11300 (9)	scaffold_2:8359191-8359838(+) (11)	NA	NA	NA	AT2G35510.1	similar to RCD one 1 	LOC_Os03g12820.2	"ATP8, putative, expressed"	Medtr7g010860.1	"WWE; PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1069.1.S1_at	A	A1TS	POPTR_0006s22110	POPTR_0006s22110 (11)	scaffold_6:21147437-21147903(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G52500.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58840.1	"Eukaryotic aspartyl protease domain containing protein, expressed"	Medtr8g105840.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10695.1.A1_at	A	A1TS	POPTR_0015s12020	POPTR_0015s12020 (11)	scaffold_15:12455998-12463140(+) (11)	NA	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129900.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106976.1.S1_s_at	A	A1TS	POPTR_0001s03460	POPTR_0001s03460 (11)	scaffold_1:2797759-2799728(+) (11)	NA	Q9SZ53	Probable protein phosphatase 2C 60	AT4G31860.1	Protein phosphatase 2C family protein 	LOC_Os06g44210.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.106982.1.A1_at	A	A1TS	POPTR_0018s12980	POPTR_0018s12980 (11)	scaffold_18:13435630-13436167(-) (11)	NA	NA	NA	AT3G15790.1	methyl-CPG-binding domain 11 	LOC_Os12g42550.1	"methyl-CpG binding domain containing protein, putative, expressed"	Medtr8g120840.1	Methyl-CpG binding 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.106983.1.S1_at	A	A2TS	POPTR_0003s06130	POPTR_0003s06170 (10)//POPTR_0003s06130 (10)	scaffold_3:7549665-7551029(-) (10)//scaffold_3:7587957-7589194(-) (10)	NA	Q55DE7	Ataxin-2 homolog	AT1G54170.1	CTC-interacting domain 3 	LOC_Os02g27950.1	"ataxin-2 related protein, putative, expressed"	Medtr2g120650.1	"Ataxin-2, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10704.1.S1_at	A	A1TS	POPTR_0005s16230	POPTR_0005s16230 (11)	scaffold_5:12951708-12951795(+) (11)	NA	NA	NA	AT1G36990.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08510.1); Has 5029 Blast hits to 1779 proteins in 339 species: Archae - 2; Bacteria - 1372; Metazoa - 990; Fungi - 933; Plants - 111; Viruses - 28; Other Eukaryotes - 1593 (source: NCBI BLink). 	NA	NA	Medtr3g098440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107075.1.S1_at	A	A1TS	POPTR_0004s14960	POPTR_0004s14960 (11)	scaffold_4:15614753-15615408(-) (11)	POPTR_0009s10650 (6)	Q8VY06	"Presequence protease 2, chloroplastic/mitochondrial"	AT3G19170.1	presequence protease 1 	LOC_Os02g52390.1	"M16 domain containing zinc peptidase, putative, expressed"	AC151525_23.1	"Small acid-soluble spore protein, alpha/beta type; ; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF AC151525.18 114168-104858 E EGN_Mt090430 200"	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.10708.1.S1_at	A	A1TS	POPTR_0012s08760	POPTR_0012s08760 (11)	scaffold_12:9839717-9839903(+) (11)	NA	O61967	Protein lap1	AT3G11330.1	plant intracellular ras group-related LRR 9 	LOC_Os04g40080.1	"leucine rich repeat containing protein, expressed"	Medtr3g114800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.107099.1.S1_s_at	A	A1TS	POPTR_0004s03730	POPTR_0004s03730 (11)	scaffold_4:2607646-2608111(+) (11)	NA	NA	NA	AT1G11125.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61170.1). 	NA	NA	Medtr2g014420.1	"CK25, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10711.1.S1_at	A	A1TS	POPTR_0010s13590	POPTR_0010s13590 (11)	scaffold_10:13411273-13411343(+) (11)	NA	NA	NA	AT1G13360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04010.1	expressed protein	Medtr4g158300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107115.1.S1_at	A	A1TS	POPTR_0013s12730	POPTR_0013s12730 (9)	scaffold_13:13404477-13406333(-) (9)	POPTR_0019s12240 (7)	Q9LLH9	"Acyl-coenzyme A oxidase 3, peroxisomal"	AT1G06290.1	acyl-CoA oxidase 3 	LOC_Os06g24704.1	"acyl-coenzyme A oxidase, putative, expressed"	Medtr4g109110.1	"Carbohydrate kinase, PfkB; Acyl-CoA dehydrogenase C-terminal-like; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.10713.1.S1_at	A	A1TS	POPTR_0013s06830	POPTR_0013s06830 (10)	scaffold_13:5512904-5514224(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107147.1.S1_at	A	A1TS	POPTR_0008s02540	POPTR_0008s02540 (11)	scaffold_8:1241444-1242356(+) (11)	NA	NA	NA	AT3G52240.1	unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). 	LOC_Os05g37340.1	expressed protein	Medtr1g116860.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107166.1.S1_s_at	A	A1TS	POPTR_0009s05670	POPTR_0009s05670 (11)	scaffold_9:5725727-5729909(+) (11)	NA	P51104	Dihydroflavonol-4-reductase	AT1G51410.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.107166.2.S1_at	A	A1TS	POPTR_0001s26360	POPTR_0001s26360 (11)	scaffold_1:25399835-25403696(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.10717.1.S1_a_at	A	A1TS	POPTR_0004s11780	POPTR_0004s11780 (11)	scaffold_4:10653055-10653339(+) (11)	NA	Q9FNP8	40S ribosomal protein S19-3	AT5G61170.1	Ribosomal protein S19e family protein 	LOC_Os03g31134.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g005130.1	Ribosomal protein S19e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10717.2.S1_at	A	A1TS	POPTR_0004s11780	POPTR_0004s11780 (11)	scaffold_4:10653161-10653283(+) (11)	NA	Q9FNP8	40S ribosomal protein S19-3	AT5G61170.1	Ribosomal protein S19e family protein 	LOC_Os03g31134.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr3g005130.1	Ribosomal protein S19e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10720.1.S1_at	A	A1TS	POPTR_0008s05620	POPTR_0008s05620 (11)	scaffold_8:3259622-3260053(-) (11)	NA	NA	NA	AT2G39650.1	Protein of unknown function (DUF506)  	LOC_Os01g74250.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr7g094290.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10720.2.S1_a_at	A	A2TS	POPTR_0008s05620	POPTR_0010s21120 (11)//POPTR_0008s05620 (11)	scaffold_10:18533322-18533448(+) (11)//scaffold_8:3262303-3262429(-) (11)	NA	NA	NA	AT2G39650.1	Protein of unknown function (DUF506)  	LOC_Os01g74250.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr7g094290.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107223.1.S1_s_at	A	A1TS	POPTR_0001s03950	POPTR_0001s03950 (11)	scaffold_1:3143433-3144110(-) (11)	NA	O65351	Subtilisin-like protease	AT4G26330.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os03g06290.1	"OsSub27 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.107240.1.S1_s_at	A	A1TS	POPTR_0009s15190	POPTR_0009s15190 (11)	scaffold_9:11783631-11784010(-) (11)	NA	Q9FNI7	Glucomannan 4-beta-mannosyltransferase 2	AT5G22740.1	cellulose synthase-like A02 	LOC_Os06g42020.1	"CSLA9 - cellulose synthase-like family A, expressed"	Medtr4g073490.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107249.1.S1_at	A	A1TS	POPTR_0005s13780	POPTR_0005s13780 (11)	scaffold_5:10780160-10780482(+) (11)	NA	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.1	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.107249.1.S1_s_at	A	A1TS	POPTR_0005s13780	POPTR_0005s13780 (11)	scaffold_5:10780233-10780456(+) (11)	NA	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.1	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.107256.1.S1_s_at	A	A1TS	POPTR_0009s13480	POPTR_0009s13480 (11)	scaffold_9:10717174-10717526(+) (11)	NA	Q9FSG7	Thaumatin-like protein 1a	AT4G38670.3	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr1g031340.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107257.1.S1_at	A	A1TS	POPTR_0002s07610	POPTR_0002s07610 (11)	scaffold_2:5202563-5204710(+) (11)	NA	Q68FJ8	TOM1-like protein 2	AT1G21380.1	Target of Myb protein 1 	LOC_Os11g09329.1	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.107280.1.S1_at	A	A1TS	POPTR_0018s13240	POPTR_0018s13240 (10)	scaffold_18:13639594-13640621(+) (10)	NA	O04196	"Isoamylase 1, chloroplastic"	AT2G39930.1	isoamylase 1 	LOC_Os08g40930.1	"Alpha amylase, catalytic domain containing protein, expressed"	Medtr4g160980.1	"Alpha amylase, catalytic region; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.10729.1.A1_at	A	A1TS	POPTR_0082s00230	POPTR_0082s00230 (11)	scaffold_8:16658432-16658759(+) (11)//scaffold_82:67704-68031(+) (11)	NA	Q94F30	Ubiquitin-like-specific protease ESD4	AT4G15880.1	Cysteine proteinases superfamily protein 	LOC_Os01g25370.1	"SUMO protease, putative, expressed"	Medtr8g138660.1	"Intermediate filament protein; Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.107313.1.S1_at	A	A1TS	POPTR_0005s20800	POPTR_0005s20800 (11)	scaffold_5:19952609-19953567(+) (11)	NA	O49286	F-box/LRR-repeat protein 5	AT1G77000.2	RNI-like superfamily protein 	LOC_Os05g35110.1	"OsFBL22 - F-box domain and LRR containing protein, expressed"	Medtr7g138390.2	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.10732.1.S1_a_at	A	A1TS	POPTR_0004s03180	POPTR_0004s03180 (11)	scaffold_4:2139150-2140607(+) (11)	NA	Q8LDI5	Thioredoxin-like protein CXXS1	AT1G11530.1	C-terminal cysteine residue is changed to a serine 1 	LOC_Os04g53740.1	"thioredoxin, putative, expressed"	Medtr2g010800.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.10732.1.S1_at	A	A1TS	POPTR_0004s03180	POPTR_0004s03180 (11)	scaffold_4:2138762-2139161(+) (11)	NA	Q8LDI5	Thioredoxin-like protein CXXS1	AT1G11530.1	C-terminal cysteine residue is changed to a serine 1 	LOC_Os04g53740.1	"thioredoxin, putative, expressed"	Medtr2g010800.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.107323.1.S1_s_at	A	A1TS	POPTR_0014s04080	POPTR_0014s04080 (11)	scaffold_14:3254342-3254958(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.107379.1.S1_s_at	A	A1TS	POPTR_0013s14960	POPTR_0013s14960 (11)	scaffold_13:15034874-15034995(-) (11)	NA	Q8S8P5	Probable WRKY transcription factor 33	AT2G38470.1	WRKY DNA-binding protein 33 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g082420.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.10738.1.S1_at	A	A1TS	POPTR_0001s08790	POPTR_0001s08790 (11)	scaffold_1:6715035-6715479(+) (11)	NA	A6QNR1	Ribosomal RNA processing protein 36 homolog	AT1G12650.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF947 (InterPro:IPR009292); Has 700 Blast hits to 631 proteins in 192 species: Archae - 0; Bacteria - 32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0; Other Eukaryotes - 302 (source: NCBI BLink). 	LOC_Os09g35670.1	expressed protein	Medtr5g066080.1	Protein of unknown function DUF947 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107388.2.A1_a_at	A	A2TS	POPTR_0008s11590	POPTR_0010s13950 (11)//POPTR_0008s11590 (11)	scaffold_10:13646626-13648124(-) (11)//scaffold_8:7383027-7384269(+) (11)	NA	NA	NA	AT1G25570.1	Di-glucose binding protein with Leucine-rich repeat domain 	LOC_Os01g04720.1	"leucine-rich repeat protein-related, putative, expressed"	Medtr5g069200.1	"Leucine-rich repeat, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107400.1.S1_at	A	A1TS	POPTR_0001s23420	POPTR_0001s23420 (11)	scaffold_1:22759463-22759921(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G44500.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr3g031560.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107409.1.S1_at	A	A1TS	POPTR_0008s06470	POPTR_0008s06470 (11)	scaffold_8:3847668-3848127(-) (11)	NA	NA	NA	AT2G39950.1	unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). 	LOC_Os07g01060.1	expressed protein	Medtr5g089220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10742.1.S1_at	A	A2TS	POPTR_0001s47040	POPTR_0001s47040 (10)//POPTR_0001s47050 (9)	scaffold_1:47367628-47368115(+) (10)//scaffold_1:47379437-47379905(-) (10)//scaffold_1:47386213-47386681(-) (9)	POPTR_0001s47060 (8)	Q6L545	Gibberellin receptor GID1	AT2G45600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g43430.1	"CXE carboxylesterase, putative, expressed"	Medtr8g150880.1	"Probable gibberellin receptor GID1L2, related "	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.107428.1.A1_at	A	A1TS	POPTR_0018s14850	POPTR_0018s14850 (11)	scaffold_18:14897697-14897951(+) (11)	NA	Q8N4V2	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os04g51970.2	"synaptic vesicle 2-related protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107428.2.A1_at	A	A1MS	POPTR_0018s14850	POPTR_0018s14850 (9)	scaffold_18:14896763-14896968(+) (9)	NA	Q8N4V2	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os04g51970.2	"synaptic vesicle 2-related protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107428.2.A1_s_at	A	A1TS	POPTR_0018s14850	POPTR_0018s14850 (10)	scaffold_18:14896143-14896594(+) (10)	NA	Q8N4V2	Synaptic vesicle 2-related protein	AT3G13050.1	Major facilitator superfamily protein 	LOC_Os04g51970.2	"synaptic vesicle 2-related protein, putative, expressed"	Medtr4g163270.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107440.1.A1_at	A	A3TS	POPTR_0010s14320	POPTR_0010s14320 (11)//POPTR_0010s14330 (11)//POPTR_0010s14370 (11)	scaffold_10:13976754-13976800(+) (11)//scaffold_10:13983209-13983255(+) (11)//scaffold_10:14004303-14004349(+) (11)	NA	NA	NA	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os01g16120.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g039970.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107444.1.A1_at	A	A2TS	POPTR_0003s05580	POPTR_0003s05590 (11)//POPTR_0003s05580 (11)	scaffold_3:6968999-6969043(+) (11)//scaffold_3:6976911-6976955(+) (11)	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT3G50280.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g01980.1	"transferase family protein, putative, expressed"	Medtr4g023990.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.107444.1.A1_s_at	A	A3TS	POPTR_0003s05570	POPTR_0003s05570 (11)//POPTR_0003s05590 (11)//POPTR_0003s05580 (11)	scaffold_3:6941763-6942049(+) (11)//scaffold_3:6968881-6969167(+) (11)//scaffold_3:6976793-6977079(+) (11)	NA	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G67150.1	HXXXD-type acyl-transferase family protein 	LOC_Os08g01980.1	"transferase family protein, putative, expressed"	Medtr4g023990.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.107448.1.A1_at	A	A1TS	POPTR_0011s09240	POPTR_0011s09240 (11)	scaffold_11:11437666-11438091(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT1G50660.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). 	LOC_Os04g53350.1	expressed protein	Medtr5g099930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10747.1.S1_at	A	A1TS	POPTR_0018s09870	POPTR_0018s09870 (11)	scaffold_18:10931274-10931316(+) (11)	NA	NA	NA	AT5G57370.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g26349.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g129240.1	"U4/U6.U5 tri-snRNP-associated protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10747.1.S1_s_at	A	A1TS	POPTR_0018s09870	POPTR_0018s09870 (11)	scaffold_18:10928855-10931190(+) (11)	NA	NA	NA	AT5G57370.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g26349.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g129240.1	"U4/U6.U5 tri-snRNP-associated protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10750.1.A1_s_at	A	A1TS	POPTR_0012s05140	POPTR_0012s05140 (11)	scaffold_12:4643545-4645128(+) (11)	NA	O14099	Uncharacterized RING finger protein C2F3.16	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.10751.1.A1_a_at	A	A2TS	POPTR_0004s01030	POPTR_0021s00380 (11)//POPTR_0004s01030 (11)	scaffold_21:115874-116028(-) (11)//scaffold_4:508422-508576(-) (11)	NA	P54260	"Aminomethyltransferase, mitochondrial"	AT1G11860.3	Glycine cleavage T-protein family 	LOC_Os04g53230.1	"aminomethyltransferase, putative, expressed"	Medtr8g147030.1	Glycine cleavage system T protein 	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
PtpAffx.10751.2.A1_at	A	A1TS	POPTR_0004s09210	POPTR_0004s09210 (10)	scaffold_4:7729538-7729681(+) (10)	NA	O14197	Uncharacterized transporter C5D6.04	AT1G71090.1	Auxin efflux carrier family protein 	LOC_Os08g09190.1	"auxin efflux carrier component, putative, expressed"	Medtr5g068420.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.10751.3.S1_at	A	A1TS	POPTR_0005s14850	POPTR_0005s14850 (10)	scaffold_5:11761522-11763441(+) (10)	NA	O14197	Uncharacterized transporter C5D6.04	AT1G71090.1	Auxin efflux carrier family protein 	LOC_Os08g09190.1	"auxin efflux carrier component, putative, expressed"	Medtr5g068420.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.10751.5.S1_a_at	A	A1TS	POPTR_0004s01030	POPTR_0004s01030 (11)	scaffold_4:508243-508392(-) (11)	NA	P54260	"Aminomethyltransferase, mitochondrial"	AT1G11860.3	Glycine cleavage T-protein family 	LOC_Os04g53230.1	"aminomethyltransferase, putative, expressed"	Medtr8g147030.1	Glycine cleavage system T protein 	GO:0006546|glycine catabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process	GO:0004047|aminomethyltransferase activity	GO:0005737|cytoplasm
PtpAffx.107566.1.A1_a_at	A	A1TS	POPTR_0001s12410	POPTR_0001s12410 (11)	scaffold_1:9619879-9620169(-) (11)	NA	Q9Y5N5	HemK methyltransferase family member 2	AT3G13440.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g60920.1	"Methyltransferase small domain containing protein, expressed"	Medtr4g025960.1	N-6 Adenine-specific DNA methylase; Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107571.1.A1_s_at	A	A2TS	POPTR_0001s16270	POPTR_0001s16270 (10)//POPTR_0018s12530 (10)	scaffold_1:13080310-13080422(-) (10)//scaffold_1:13088725-13088837(+) (10)//scaffold_18:13093265-13093377(+) (10)	NA	P83948	Pectinesterase 3	AT3G14310.1	pectin methylesterase 3 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr8g026730.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.107579.1.A1_at	A	A1TS	POPTR_0001s46600	POPTR_0001s46600 (11)	scaffold_1:46965441-46965915(+) (11)	POPTR_0001s46620 (8)	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.107587.1.A1_s_at	A	A1TS	POPTR_0014s02550	POPTR_0014s02550 (11)	scaffold_14:2130360-2130405(+) (11)	NA	P42731	Polyadenylate-binding protein 2	AT4G34110.1	poly(A) binding protein 2 	LOC_Os04g42600.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
PtpAffx.10759.1.S1_at	A	A1TS	POPTR_0005s08160	POPTR_0005s08160 (11)	scaffold_5:5609421-5609939(-) (11)	NA	NA	NA	AT4G39700.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os03g26650.2	"heavy metal-associated domain containing protein, expressed"	Medtr4g140470.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.107590.1.A1_at	A	A1TS	POPTR_0002s13780	POPTR_0002s13780 (10)	scaffold_2:10205930-10207269(-) (11)	NA	Q797A7	Uncharacterized amino acid permease YfnA	AT1G05940.1	cationic amino acid transporter 9 	LOC_Os02g43860.1	"amino acid permease, putative, expressed"	Medtr7g103380.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107592.1.A1_at	A	A1TS	POPTR_0004s13520	POPTR_0004s13520 (11)	scaffold_4:13792030-13792614(-) (11)	NA	NA	NA	AT1G27100.1	Actin cross-linking protein 	LOC_Os03g58740.1	expressed protein	Medtr5g038610.1	Cytosolic fatty-acid binding; Actin-crosslinking proteins 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107621.1.A1_at	A	A1TS	POPTR_0002s14680	POPTR_0002s14680 (11)	scaffold_2:10913326-10913820(-) (11)	NA	P17407	21 kDa protein	AT4G00080.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.107622.1.A1_a_at	A	A1TS	POPTR_0006s10950	POPTR_0006s10950 (11)	scaffold_6:8319953-8320059(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.107622.1.A1_at	A	A1TS	POPTR_0006s10950	POPTR_0006s10950 (11)	scaffold_6:8319974-8320455(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.10764.1.S1_at	A	A1TS	POPTR_0006s09370	POPTR_0006s09370 (11)	scaffold_6:6884432-6884646(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G02010.1	RHO guanyl-nucleotide exchange factor 7 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.107643.1.A1_at	A	A1TS	POPTR_0013s00510	POPTR_0013s00510 (11)	scaffold_13:217462-217793(-) (11)	NA	O65399	"Glucan endo-1,3-beta-glucosidase 1"	AT1G09460.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os03g61780.2	"glucan endo-1,3-beta-glucosidase-related, putative, expressed"	Medtr1g102900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107650.1.A1_at	A	A1TS	POPTR_0010s11610	POPTR_0010s11610 (9)	scaffold_10:11806574-11806874(+) (11)	NA	Q9C9W9	Adagio protein 3	AT1G68050.1	"flavin-binding, kelch repeat, f box 1 "	LOC_Os11g34460.1	"OsFBO10 - F-box and other domain containing protein, expressed"	Medtr4g156890.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107658.1.A1_at	A	A1TS	POPTR_0001s24600	POPTR_0001s24600 (10)	scaffold_1:23858551-23859381(+) (10)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g01060.1	"protein kinase family protein, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.10768.1.S1_at	A	A1TS	POPTR_0012s07530	POPTR_0012s07530 (11)	scaffold_12:8433263-8435108(-) (11)	NA	Q5SY16	Nucleolar protein 9	AT5G11010.3	Pre-mRNA cleavage complex II protein family 	LOC_Os01g08850.1	expressed protein	AC233656_20.1	Pre-mRNA cleavage complex II Clp1; NUC156 AC233656.1 75087-73221 E EGN_Mt090430 200	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	GO:0005525|GTP binding	NA
PtpAffx.107682.1.A1_a_at	A	A1TS	POPTR_0001s21260	POPTR_0001s21260 (11)	scaffold_1:19661287-19661840(+) (11)//scaffold_1942:42-548(+) (10)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.1	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr7g143650.1	"ATPase, E1-E2 type; Heavy metal transport/detoxification protein "	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.107686.1.A1_at	A	A1TS	POPTR_0002s10800	POPTR_0002s10800 (11)	scaffold_2:7839365-7839917(-) (11)	NA	NA	NA	AT1G27595.1	CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). 	LOC_Os01g49940.1	"ESP4, putative, expressed"	Medtr3g127800.1	"T17H3.9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107687.1.S1_s_at	A	A1TS	POPTR_0001s24360	POPTR_0001s24360 (11)	scaffold_1:23661449-23664333(-) (11)	NA	NA	NA	AT5G59960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g05830.1	expressed protein	Medtr4g078590.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107697.1.A1_at	A	A1TS	POPTR_0003s16150	POPTR_0003s16150 (10)	scaffold_3:15762961-15763346(+) (10)	NA	NA	NA	AT2G33550.1	Homeodomain-like superfamily protein 	LOC_Os02g31160.1	"transcription factor, putative"	Medtr7g020740.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.1.S1_a_at	A	A1TS	POPTR_0002s03390	POPTR_0002s03390 (11)	scaffold_2:2103758-2104936(+) (11)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.1.S1_at	A	A1TS	POPTR_0002s03390	POPTR_0002s03390 (10)	scaffold_2:2103789-2104823(+) (10)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.2.S1_at	A	A1TS	POPTR_0005s25220	POPTR_0005s25220 (11)	scaffold_5:23522144-23522184(-) (11)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.2.S1_s_at	A	A1TS	POPTR_0005s25220	POPTR_0005s25220 (11)	scaffold_5:23521907-23522152(-) (11)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.3.S1_at	A	A1MS	POPTR_0002s03390	POPTR_0002s03390 (11)	scaffold_2:2102192-2103245(+) (11)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.5.S1_at	A	A1MS	POPTR_0005s25220	POPTR_0005s25220 (11)	scaffold_5:23524378-23524720(-) (11)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10771.6.A1_at	A	A1TS	POPTR_0005s25220	POPTR_0005s25220 (9)	scaffold_5:23522971-23523179(-) (9)	NA	NA	NA	AT1G75380.3	bifunctional nuclease in basal defense response 1 	LOC_Os08g26870.3	"wound responsive protein, putative, expressed"	Medtr5g023090.1	Protein of unknown function DUF151 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107722.1.A1_at	A	A1TS	POPTR_0012s07780	POPTR_0012s07780 (11)	scaffold_12:8689789-8691211(-) (11)	NA	A6TXE3	Ribosomal RNA small subunit methyltransferase G	AT5G50110.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	Medtr8g125150.1	Glucose inhibited division protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008649|rRNA methyltransferase activity	GO:0005737|cytoplasm
PtpAffx.107728.2.A1_a_at	A	A1TS	POPTR_0018s12820	POPTR_0018s12820 (11)	scaffold_18:13343934-13344794(-) (11)	NA	Q99MP8	BRCA1-associated protein	AT2G42160.1	zinc finger (ubiquitin-hydrolase) domain-containing protein 	LOC_Os04g55480.2	"BRCA1-associated protein, putative, expressed"	Medtr8g121030.1	"Zinc finger, UBP-type; Zinc finger, RING-type; BRCA1-associated 2 "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.107729.1.A1_at	A	A1MA	POPTR_0007s14900	POPTR_0007s14900 (10)	scaffold_7:14597129-14597687(-) (10)	NA	A4XP61	Amino-acid acetyltransferase	AT4G37670.2	N-acetyl-l-glutamate synthase 2 	LOC_Os03g31690.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g015470.1	Amino-acid N-acetyltransferase (ArgA) 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.10774.1.S1_at	A	A1TS	POPTR_0002s16690	POPTR_0002s16690 (11)	scaffold_2:12475844-12476767(+) (11)	NA	O82352	Reticulon-like protein B5	AT2G46170.1	Reticulon family protein 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.107745.1.A1_at	A	A1TS	POPTR_0003s16080	POPTR_0003s16080 (10)	scaffold_3:15692426-15692736(+) (10)	NA	Q8VYZ0	E3 ubiquitin-protein ligase ORTHRUS 2	AT1G57820.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01230.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g159770.1	"Zinc finger, RING-type; SRA-YDG; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107746.1.A1_at	A	A1TS	POPTR_0004s09790	POPTR_0004s09790 (10)	scaffold_4:8289234-8289736(-) (10)	NA	NA	NA	AT1G67050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38320.1); Has 617 Blast hits to 318 proteins in 80 species: Archae - 0; Bacteria - 16; Metazoa - 141; Fungi - 62; Plants - 128; Viruses - 2; Other Eukaryotes - 268 (source: NCBI BLink). 	NA	NA	Medtr7g093370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107764.1.A1_at	A	A1TS	POPTR_0003s02620	POPTR_0003s02620 (10)	scaffold_3:2713720-2713913(-) (10)	NA	B7KEJ8	Chaperone protein dnaJ	AT1G80030.2	Molecular chaperone Hsp40/DnaJ family protein 	LOC_Os02g56040.1	"chaperone protein dnaJ, putative, expressed"	Medtr2g126720.1	Chaperone DnaJ 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.107781.1.A1_at	A	A1TS	POPTR_0002s11210	POPTR_0002s11210 (11)	scaffold_2:8279295-8279771(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107787.1.A1_at	A	A1TS	POPTR_0005s06050	POPTR_0005s06050 (9)	scaffold_5:3974573-3975020(-) (9)	NA	Q9FMJ0	Phosphatidylinositol 4-kinase beta 1	AT5G64070.1	phosphatidylinositol 4-OH kinase beta1 	LOC_Os11g10420.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g142660.1	"Phosphatidylinositol 3- and 4-kinase, catalytic "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.107803.1.A1_at	A	A1TS	POPTR_0002s21000	POPTR_0002s21000 (11)	scaffold_2:17318459-17319112(-) (11)	NA	NA	NA	AT3G62900.1	CW-type Zinc Finger 	LOC_Os03g22580.2	"CW-type Zinc Finger, putative, expressed"	Medtr7g130050.1	"Zinc finger, CW-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.107813.1.A1_at	A	A1TS	POPTR_0006s06980	POPTR_0006s06980 (11)	scaffold_6:5024558-5025680(-) (11)	NA	O58107	Probable galactokinase	AT3G10700.1	galacturonic acid kinase 	LOC_Os04g51880.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr4g160950.1	Mevalonate and galactokinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.107813.1.A1_s_at	A	A1TS	POPTR_0006s06980	POPTR_0006s06980 (11)	scaffold_6:5024831-5025543(-) (11)	NA	O58107	Probable galactokinase	AT3G10700.1	galacturonic acid kinase 	LOC_Os04g51880.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr4g160950.1	Mevalonate and galactokinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.107814.1.A1_at	A	A1TS	POPTR_0007s10460	POPTR_0007s10460 (11)	scaffold_7:10417446-10417721(+) (11)	NA	Q6C9M9	Chromatin modification-related protein EAF3	AT4G37280.1	MRG family protein 	LOC_Os04g01130.1	"chromatin modification-related protein EAF3, putative, expressed"	NA	NA	NA	NA	GO:0005634|nucleus
PtpAffx.107820.1.S1_at	A	A1TS	POPTR_0001s25340	POPTR_0001s25340 (11)	scaffold_1:24503359-24503854(+) (11)	NA	NA	NA	AT5G59020.1	Protein of unknown function (DUF3527) 	LOC_Os03g16070.3	expressed protein	Medtr2g117390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107845.1.A1_at	A	A1TS	POPTR_0003s21530	POPTR_0003s21530 (11)	scaffold_3:19657917-19657965(+) (11)	NA	Q6QNM1	Casein kinase I	AT3G13670.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g005760.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.107855.1.A1_a_at	A	A1TS	POPTR_0001s25530	POPTR_0001s25530 (11)	scaffold_1:24609294-24609360(-) (11)	NA	Q66GI9	"Probable anion transporter 4, chloroplastic"	AT3G46980.3	phosphate transporter 4;3 	LOC_Os01g63290.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107855.1.A1_at	A	A1TS	POPTR_0001s25530	POPTR_0001s25530 (11)	scaffold_1:24609015-24609858(-) (11)	NA	Q66GI9	"Probable anion transporter 4, chloroplastic"	AT3G46980.3	phosphate transporter 4;3 	LOC_Os01g63290.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107857.1.A1_s_at	A	A1TS	POPTR_0001s28440	POPTR_0001s28440 (11)	scaffold_1:27223134-27223223(-) (11)	NA	O80873	Uncharacterized protein At1g07170/At2g30000	AT2G30000.1	PHF5-like protein 	LOC_Os05g30410.1	"PHF5-like protein domain containing protein, expressed"	Medtr4g024080.1	Protein of unknown function UPF0123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107865.1.S1_at	A	A1TS	POPTR_0002s12500	POPTR_0002s12500 (9)	scaffold_2:9279400-9280732(-) (11)	NA	O95239	Chromosome-associated kinesin KIF4A	AT5G47820.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g02650.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g147320.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.107876.1.A1_at	A	A1TS	POPTR_0004s11910	POPTR_0004s11910 (11)	scaffold_4:10757595-10759077(-) (11)	NA	NA	NA	AT5G39220.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41080.1	"hydrolase, alpha/beta fold family domain containing protein"	Medtr5g047260.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107881.1.A1_at	A	A1TS	POPTR_0006s12960	POPTR_0006s12960 (10)	scaffold_6:10218508-10221227(-) (10)	NA	NA	NA	AT2G37195.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g56190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107905.1.S1_at	A	A1TS	POPTR_0004s21680	POPTR_0004s21680 (11)	scaffold_4:20734463-20734883(+) (11)	NA	A4SGN0	Homoserine kinase	AT2G17265.1	homoserine kinase 	LOC_Os02g58510.1	"GHMP kinases ATP-binding protein, putative"	Medtr5g106780.1	Homoserine kinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.107905.2.A1_at	A	A1TS	POPTR_0009s16960	POPTR_0009s16960 (11)	scaffold_9:12791295-12791818(-) (11)	NA	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os02g13560.4	"transporter family protein, putative, expressed"	Medtr3g164110.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.107925.1.A1_at	A	A1TS	POPTR_0002s04680	POPTR_0002s04680 (10)	scaffold_2:2921205-2921524(-) (10)	NA	Q96PP9	Guanylate-binding protein 4	AT2G38840.1	Guanylate-binding family protein 	LOC_Os03g58240.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.107951.1.A1_at	A	A1TS	POPTR_0015s02200	POPTR_0015s02200 (11)	scaffold_15:1524727-1525074(-) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.107951.1.A1_s_at	A	A1TS	POPTR_0015s02200	POPTR_0015s02200 (11)	scaffold_15:1524791-1525627(-) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.107976.1.A1_a_at	A	A1TS	POPTR_0016s08430	POPTR_0016s08430 (11)	scaffold_16:6243532-6244468(+) (11)	NA	Q8H8U5	Protein IN2-1 homolog B	AT5G02790.1	Glutathione S-transferase family protein 	LOC_Os03g17470.1	"IN2-1 protein, putative, expressed"	AC235022_17.1	Thioredoxin fold; Thioredoxin-like fold AC235022.1 105935-107691 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107979.1.A1_s_at	A	A1TS	POPTR_0016s12870	POPTR_0016s12870 (11)	scaffold_16:12220496-12221063(+) (11)	NA	Q08C72	Pre-mRNA-splicing factor CWC22 homolog	AT1G80930.1	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os12g15420.1	"nucampholin, putative, expressed"	Medtr7g112210.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.107983.1.A1_at	A	A1MS	POPTR_0016s03220	POPTR_0016s03220 (11)	scaffold_16:1641674-1642058(-) (11)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.107986.1.A1_at	A	A1TS	POPTR_0002s05580	POPTR_0002s05580 (10)	scaffold_2:3651205-3651439(-) (10)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107986.1.A1_s_at	A	A1TS	POPTR_0002s05580	POPTR_0002s05580 (11)	scaffold_2:3651448-3651757(-) (11)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10799.1.S1_at	A	A1TS	POPTR_0010s01860	POPTR_0010s01860 (10)	scaffold_10:2043187-2044504(+) (11)//scaffold_10:2061311-2062061(+) (9)	NA	Q767L8	Mediator of DNA damage checkpoint protein 1	AT3G21480.1	BRCT domain-containing DNA repair protein 	LOC_Os05g05440.1	expressed protein	Medtr2g025520.1	BRCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.107994.1.A1_at	A	A1MS	POPTR_0017s06170	POPTR_0017s06170 (11)	scaffold_17:4775828-4776129(+) (11)	NA	P41252	"Isoleucyl-tRNA synthetase, cytoplasmic"	AT4G10320.1	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os06g43760.1	"tRNA synthetase class I, putative, expressed"	Medtr4g104390.1	"Aminoacyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.108003.1.S1_at	A	A1TS	POPTR_0018s02330	POPTR_0018s02330 (11)	scaffold_18:2084175-2084253(+) (11)	NA	P62598	Two-component response regulator ARR12	AT2G25180.1	response regulator 12 	LOC_Os02g08500.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.108003.1.S1_s_at	A	A1TS	POPTR_0018s02330	POPTR_0018s02330 (11)	scaffold_18:2084360-2085857(+) (11)	POPTR_0006s27800 (6)	P62598	Two-component response regulator ARR12	AT2G25180.1	response regulator 12 	LOC_Os02g08500.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.108016.1.A1_at	A	A1TS	POPTR_0006s17740	POPTR_0006s17740 (11)	scaffold_6:15916921-15917278(+) (11)	NA	Q3ECB8	Pentatricopeptide repeat-containing protein At1g77170	AT1G77170.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g42610.1	"pentatricopeptide, putative, expressed"	Medtr4g159620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108018.1.A1_at	A	A1MS	POPTR_0008s16000	POPTR_0008s16000 (9)	scaffold_8:10679098-10679286(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108020.1.A1_at	A	A1MS	POPTR_0007s03970	POPTR_0007s03970 (10)	scaffold_7:2371503-2373244(-) (10)	NA	Q9LIH5	Zinc finger CCCH domain-containing protein 38	AT3G18640.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os08g04170.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr3g143650.2	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.10803.1.S1_at	A	A1TS	POPTR_0004s17810	POPTR_0004s17810 (11)	scaffold_4:17845507-17845700(+) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022110.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.108034.1.A1_at	A	A1TA	POPTR_0004s03010	POPTR_0004s03010 (11)	scaffold_4:2029853-2030231(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108043.1.A1_at	A	A1TS	POPTR_0006s02290	POPTR_0006s02290 (11)	scaffold_6:1508509-1508818(-) (11)	NA	Q7ZUW2	Hypoxia up-regulated protein 1	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g48110.1	"DnaK family protein, putative, expressed"	Medtr3g068340.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108048.1.A1_at	A	A1TS	POPTR_0005s25730	POPTR_0005s25730 (11)	scaffold_5:23933525-23933632(+) (11)	NA	Q52KW8	Protein RCC2 homolog	AT1G19880.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os04g56720.1	"RCC2, putative, expressed"	AC235665_41.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II AC235665.2 227564-234542 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108056.1.A1_at	A	A1TA	POPTR_0010s11350	POPTR_0010s11350 (11)	scaffold_10:11657042-11657363(-) (11)	NA	Q9C5U0	Histidine kinase 4	AT2G01830.1	CHASE domain containing histidine kinase protein 	LOC_Os03g50860.1	"histidine kinase, putative, expressed"	Medtr4g156220.1	Response regulator receiver; CHASE; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.108059.1.A1_at	A	A1TS	POPTR_0008s16920	POPTR_0008s16920 (11)	scaffold_8:11368487-11370635(+) (11)	NA	B5WWZ8	Long-chain-alcohol oxidase FAO1	AT3G23410.1	fatty alcohol oxidase 3 	LOC_Os02g40840.1	"alcohol oxidase, putative, expressed"	Medtr1g090220.1	Glucose-methanol-choline oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.108063.1.A1_at	A	A1TS	POPTR_0001s13180	POPTR_0001s13180 (11)	scaffold_1:10257574-10257909(-) (11)	NA	Q8LL04	RNA polymerase II C-terminal domain phosphatase-like 3	AT2G33540.1	C-terminal domain phosphatase-like 3 	LOC_Os11g31890.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr7g020970.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.108065.1.A1_at	A	A1MS	POPTR_0013s12680	POPTR_0013s12680 (11)	scaffold_13:13386951-13387123(+) (11)	NA	Q9P7W0	OPA3-like protein	AT1G28510.1	Optic atrophy 3 protein (OPA3) 	LOC_Os02g20844.1	expressed protein	Medtr2g018330.1	Optic atrophy 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108074.1.A1_at	A	A2TS	POPTR_0010s11720	POPTR_0010s11720 (11)//POPTR_0010s11730 (11)	scaffold_10:11896561-11897162(-) (11)//scaffold_10:11907772-11908749(-) (11)	NA	Q9FIZ3	LRR receptor-like serine/threonine-protein kinase GSO2	AT2G34930.1	disease resistance family protein / LRR family protein 	LOC_Os08g42840.1	"leucine rich repeat protein, putative, expressed"	Medtr2g021180.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.108080.1.A1_at	A	A1MS	POPTR_0019s10160	POPTR_0019s10160 (11)	scaffold_19:11741540-11742499(-) (11)	NA	Q69ZF3	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.108099.1.A1_at	A	A1TS	POPTR_0013s12360	POPTR_0013s12360 (11)	scaffold_13:12977492-12977788(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108104.1.A1_at	A	A1TS	POPTR_0001s46210	POPTR_0001s46210 (11)	scaffold_1:46644816-46646588(+) (11)	NA	P37518	GTP-dependent nucleic acid-binding protein engD	AT1G56050.1	GTP-binding protein-related 	LOC_Os03g56840.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.108105.1.A1_at	A	A1TS	POPTR_0015s04160	POPTR_0015s04160 (9)	scaffold_15:4190262-4190471(+) (9)	NA	Q8VHK9	Probable ATP-dependent RNA helicase DHX36	AT1G48650.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g53760.1	"ATP-dependent RNA helicase DHX36, putative, expressed"	Medtr4g155640.1	Double-stranded RNA binding; DEAD/DEAH box helicase; ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.108108.1.A1_at	A	A1MS	POPTR_0007s14800	POPTR_0007s14800 (9)	scaffold_7:14531898-14532376(+) (9)	NA	O81004	GTP-binding protein At2g22870	AT2G22870.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g13000.2	"GTP-binding protein, putative, expressed"	Medtr3g132650.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.108119.1.A1_at	A	A1MS	POPTR_0003s16860	POPTR_0003s16860 (11)	scaffold_3:16375526-16375765(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108132.1.A1_at	A	A1TS	POPTR_0006s16160	POPTR_0006s16160 (11)	scaffold_6:14089624-14090125(-) (11)	NA	NA	NA	AT1G69430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 216 Blast hits to 215 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g40470.1	expressed protein	Medtr4g115820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108153.1.A1_at	A	A1TS	POPTR_0002s13210	POPTR_0002s13210 (11)	scaffold_2:9840995-9841092(+) (11)	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1082.1.S1_at	A	A1TS	POPTR_0017s04870	POPTR_0017s04870 (11)	scaffold_17:3747668-3747834(-) (11)	NA	Q54Q31	Prohibitin-2	AT2G20530.2	prohibitin 6 	LOC_Os03g62490.1	"prohibitin-2, putative, expressed"	Medtr4g107930.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1082.2.S1_s_at	A	A1TS	POPTR_0001s41100	POPTR_0001s41100 (11)	scaffold_1:40758617-40758810(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10820.2.S1_a_at	A	A1TS	POPTR_0018s09190	POPTR_0018s09190 (11)	scaffold_18:10075756-10076200(+) (11)	NA	Q9SL76	Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein	AT2G20050.1	protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases 	LOC_Os02g17970.1	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g140110.1	Protein phosphatase 2C; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.108239.1.A1_s_at	A	A1TS	POPTR_0011s14860	POPTR_0011s14860 (11)	scaffold_11:17121076-17121681(+) (11)	NA	NA	NA	AT1G76520.2	Auxin efflux carrier family protein 	LOC_Os09g31478.1	"auxin efflux carrier component, putative, expressed"	CU179634_11.1	Auxin Efflux Carrier CU179634.6 45127-49222 H EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.108253.1.A1_s_at	A	A1TS	POPTR_0004s00350	POPTR_0004s00350 (11)	scaffold_4:99027-99475(+) (11)	NA	NA	NA	AT1G12020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G62422.1); Has 89 Blast hits to 88 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os11g29810.1	conserved hypothetical protein	Medtr2g029450.1	"protein F12F1.11 -, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108273.1.A1_at	A	A1TS	POPTR_0005s09920	POPTR_0005s09920 (11)	scaffold_5:7012104-7012413(+) (11)	NA	NA	NA	AT3G12830.1	SAUR-like auxin-responsive protein family  	LOC_Os03g45800.1	OsSAUR14 - Auxin-responsive SAUR gene family member	Medtr3g133040.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108288.1.A1_a_at	A	A1TS	POPTR_0016s02300	POPTR_0016s02300 (11)	scaffold_16:1115031-1115079(-) (11)//scaffold_16:1115080-1115128(-) (11)	NA	A2CES0	Neuferricin	AT4G14965.1	membrane-associated progesterone binding protein 4 	LOC_Os03g10790.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g138500.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.108288.1.A1_at	A	A1TS	POPTR_0016s02300	POPTR_0016s02300 (11)	scaffold_16:1114953-1116172(-) (11)	NA	A2CES0	Neuferricin	AT4G14965.1	membrane-associated progesterone binding protein 4 	LOC_Os03g10790.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr3g138500.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.108289.1.A1_s_at	A	A2TS	POPTR_0008s04670	POPTR_0008s04670 (11)//POPTR_0010s22180 (11)	scaffold_10:19179797-19180520(+) (11)//scaffold_8:2675234-2676140(-) (11)	NA	Q9LHJ9	Probable protein phosphatase 2C 38	AT3G12620.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr1g146560.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108293.1.A1_at	A	A1MS	POPTR_0004s10440	POPTR_0004s10440 (9)	scaffold_4:8993401-8993738(-) (9)	NA	Q8K4H1	Probable arylformamidase	AT5G15860.1	prenylcysteine methylesterase 	LOC_Os05g50170.2	"ATPCME, putative, expressed"	AC233657_30.1	"Carboxylesterase, type B AC233657.1 159050-155204 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108294.1.A1_at	A	A1TS	POPTR_0003s22090	POPTR_0003s22090 (11)	scaffold_3:20032081-20032653(+) (11)	NA	O23116	ETHYLENE INSENSITIVE 3-like 3 protein	AT1G73730.1	ETHYLENE-INSENSITIVE3-like 3 	LOC_Os09g31400.1	"ethylene-insensitive 3, putative, expressed"	Medtr2g118010.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.108296.1.A1_at	A	A1TS	POPTR_0009s02410	POPTR_0009s02410 (11)	scaffold_9:3165665-3166389(-) (11)	NA	Q9FMR5	Vesicle-associated membrane protein 714	AT5G22360.1	vesicle-associated membrane protein 714 	LOC_Os10g06540.1	"vesicle-associated membrane protein, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.108310.1.A1_at	A	A1TS	POPTR_0008s07600	POPTR_0008s07600 (11)	scaffold_8:4657664-4657799(+) (11)	NA	Q93V61	Phospholipase A(1) LCAT3	AT3G03310.1	lecithin:cholesterol acyltransferase 3 	LOC_Os09g33820.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr7g090070.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108310.1.A1_s_at	A	A1TS	POPTR_0008s07600	POPTR_0008s07600 (11)	scaffold_8:4656533-4657627(+) (11)	NA	Q93V61	Phospholipase A(1) LCAT3	AT3G03310.1	lecithin:cholesterol acyltransferase 3 	LOC_Os09g33820.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr7g090070.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108312.1.A1_s_at	A	A1TS	POPTR_0003s17840	POPTR_0003s17840 (11)	scaffold_3:17101661-17102422(-) (11)	NA	Q38942	Rae1-like protein At1g80670	AT1G80670.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g07960.2	"mitotic checkpoint protein, putative, expressed"	Medtr2g008550.1	"Peptidase, cysteine peptidase active site; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108315.1.A1_at	A	A1TS	POPTR_0003s11410	POPTR_0003s11410 (11)	scaffold_3:12228585-12229400(+) (11)	NA	O81312	UDP-glucuronate 4-epimerase 3	AT4G00110.1	UDP-D-glucuronate 4-epimerase 3 	LOC_Os02g54890.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr4g025510.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.108318.1.A1_at	A	A1MS	POPTR_0006s14520	POPTR_0006s14520 (11)	scaffold_6:11864376-11864925(-) (11)	NA	Q9FEW9	12-oxophytodienoate reductase 3	AT2G06050.3	oxophytodienoate-reductase 3 	LOC_Os08g35740.2	"12-oxophytodienoate reductase, putative, expressed"	Medtr5g006840.1	NADH:flavin oxidoreductase/NADH oxidase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.108328.1.A1_a_at	A	A1TS	POPTR_0016s10180	POPTR_0016s10180 (10)	scaffold_16:8331931-8332400(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g070900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10834.1.A1_at	A	A1TS	POPTR_0017s13090	POPTR_0017s13090 (9)	scaffold_17:13263040-13264035(+) (9)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os11g41150.1	"nitrilase-associated protein, putative, expressed"	Medtr7g025650.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108350.1.A1_at	A	A1TS	POPTR_0016s08010	POPTR_0016s08010 (11)	scaffold_16:5814411-5814694(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT3G52660.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g127590.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.108353.1.A1_at	A	A1TS	POPTR_0005s23880	POPTR_0005s23880 (11)	scaffold_5:22600009-22600366(+) (11)	NA	Q96PP9	Guanylate-binding protein 4	AT2G38840.1	Guanylate-binding family protein 	LOC_Os03g58240.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.108357.1.A1_at	A	A1TS	POPTR_0018s14680	POPTR_0018s14680 (11)	scaffold_18:14803521-14804767(-) (11)	NA	Q5Z818	Squamosa promoter-binding-like protein 12	AT5G43270.1	squamosa promoter binding protein-like 2 	LOC_Os06g49010.6	"OsSPL12 - SBP-box gene family member, expressed"	Medtr3g103970.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.108360.1.A1_at	A	A1TS	POPTR_0006s28380	POPTR_0006s28380 (11)	scaffold_6:26080547-26082054(+) (11)	NA	Q9FVR6	"Uncharacterized protein At1g32220, chloroplastic"	AT5G10730.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g35039.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138720.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.108366.1.A1_at	A	A1TS	POPTR_0004s15520	POPTR_0004s15520 (11)	scaffold_4:16134499-16136987(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108379.1.A1_at	A	A1TS	POPTR_0011s00840	POPTR_0011s00840 (11)	scaffold_11:423852-424630(-) (11)	NA	Q9H223	EH domain-containing protein 4	AT4G05520.1	EPS15 homology domain 2 	LOC_Os06g47330.1	"dynamin family protein, putative, expressed"	Medtr2g029240.1	"EPS15 homology (EH); Dynamin; Actin-binding, actinin-type "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.108380.2.A1_a_at	A	A1TS	POPTR_0001s39240	POPTR_0001s39240 (11)	scaffold_1:38453687-38453947(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g14940.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
PtpAffx.108387.1.A1_at	A	A1MS	POPTR_0002s03900	POPTR_0002s03900 (11)	scaffold_2:2447642-2448197(-) (11)	NA	NA	NA	AT1G06200.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os04g01240.1	"serine-type peptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10840.1.S1_at	A	A1TS	POPTR_0018s04240	POPTR_0018s04240 (11)	scaffold_18:3558536-3559088(+) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10840.1.S1_s_at	A	A1TS	POPTR_0018s04240	POPTR_0018s04240 (11)	scaffold_18:3559106-3559475(+) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10840.2.A1_a_at	A	A1TS	POPTR_0018s04240	POPTR_0018s04240 (11)	scaffold_18:3558234-3558427(+) (11)	NA	NA	NA	AT4G31130.1	Protein of unknown function (DUF1218) 	LOC_Os05g02990.2	expressed protein	Medtr3g133660.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10843.1.A1_at	A	A1MS	POPTR_0008s11930	POPTR_0008s11930 (11)	scaffold_8:7686264-7686752(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.10843.2.A1_s_at	A	A1TS	POPTR_0010s13490	POPTR_0010s13490 (11)	scaffold_10:13308196-13309204(-) (11)	NA	Q8RWD0	Zinc finger protein CONSTANS-LIKE 16	AT1G25440.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g15330.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr4g158260.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.108432.1.A1_at	A	A1TS	POPTR_0001s25830	POPTR_0001s25830 (11)	scaffold_1:24908852-24909683(-) (11)	NA	Q39253	Vacuolar cation/proton exchanger 1	AT2G38170.1	cation exchanger 1 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr5g078800.1	Calcium/proton exchanger superfamily 	NA	NA	GO:0016021|integral to membrane
PtpAffx.108442.1.A1_at	A	A1TS	POPTR_0005s26000	POPTR_0005s26000 (11)	scaffold_5:24159477-24159934(-) (11)	NA	NA	NA	AT1G75730.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages. 	NA	NA	Medtr3g156340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108447.1.A1_at	A	A1TS	POPTR_0010s16820	POPTR_0010s16820 (11)	scaffold_10:15667499-15667865(+) (11)	NA	Q8L608	Heparanase-like protein 2	AT5G61250.1	glucuronidase 1 	LOC_Os07g40740.1	"heparanase-like protein precursor, putative, expressed"	Medtr5g046570.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.108454.1.A1_a_at	A	A1TS	POPTR_0010s06330	POPTR_0010s06330 (11)	scaffold_10:7729405-7731562(+) (11)	NA	O64511	Protein TWIN LOV 1	AT2G02710.2	PAS/LOV protein B 	LOC_Os01g09120.1	"Twin LOV 1, putative, expressed"	Medtr5g039450.1	PAS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	NA
PtpAffx.108460.1.A1_at	A	A1TS	POPTR_0001s30520	POPTR_0001s30520 (11)	scaffold_1:28996753-28997378(+) (11)	NA	O64628	Thioredoxin domain-containing protein 9 homolog	AT2G18990.1	thioredoxin domain-containing protein 9 homolog 	LOC_Os08g15204.1	"thioredoxin domain-containing protein 9, putative, expressed"	Medtr8g092810.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108468.1.A1_at	A	A1TS	POPTR_0004s21510	POPTR_0004s21510 (11)	scaffold_4:20611531-20611826(+) (11)	NA	NA	NA	AT4G38280.1	BEST Arabidopsis thaliana protein match is: Integral membrane protein hemolysin-III homolog (TAIR:AT2G45250.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g37700.1	"proteophosphoglycan ppg4, putative, expressed"	Medtr3g164060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108488.1.A1_at	A	A1TS	POPTR_0018s09060	POPTR_0018s09060 (11)	scaffold_18:9940692-9940767(-) (11)	NA	Q8S3D1	Transcription factor bHLH68	AT4G29100.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g14010.1	"ethylene-responsive protein related, putative, expressed"	AC233783_18.2	Helix-loop-helix DNA-binding AC233783.1 82495-77637 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108493.1.A1_at	A	A1TS	POPTR_0001s47440	POPTR_0001s47440 (11)	scaffold_1:47639749-47640047(-) (11)	POPTR_0011s17070 (6)	Q5SSW2	Proteasome activator complex subunit 4	AT3G13330.1	proteasome activating protein 200 	LOC_Os06g19730.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108502.1.A1_a_at	A	A2TS	POPTR_0012s07940	POPTR_0015s08460 (11)//POPTR_0012s07940 (11)	scaffold_12:8934085-8934198(+) (11)//scaffold_15:9729992-9730135(+) (11)	NA	Q7X843	RING-H2 finger protein ATL48	AT3G48030.1	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os09g20900.1	"hypoxia-responsive family protein, putative, expressed"	Medtr8g125330.1	Hypoxia induced protein conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108502.2.S1_at	A	A1TS	POPTR_0015s08460	POPTR_0015s08460 (11)	scaffold_15:9729901-9730230(+) (11)	NA	Q7X843	RING-H2 finger protein ATL48	AT3G48030.1	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os09g20900.1	"hypoxia-responsive family protein, putative, expressed"	Medtr8g125330.1	Hypoxia induced protein conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108506.1.A1_at	A	A1TS	POPTR_0004s01070	POPTR_0004s01070 (11)	scaffold_4:535796-536538(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT4G22010.1	SKU5  similar 4 	LOC_Os06g46500.1	"monocopper oxidase, putative, expressed"	Medtr8g147000.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.108513.1.A1_s_at	A	A1TS	POPTR_0015s01510	POPTR_0015s01510 (11)	scaffold_15:933786-934296(+) (11)	NA	Q7LBC6	Lysine-specific demethylase 3B	AT4G00990.1	Transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os03g31594.1	"jmjC domain containing protein, expressed"	Medtr1g009190.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, RING-type; Transcription factor jumonji, jmjC; "	NA	GO:0003677|DNA binding	NA
PtpAffx.108514.1.A1_at	A	A1TS	POPTR_0018s00510	POPTR_0018s00510 (11)	scaffold_18:452618-452756(-) (11)	NA	Q94FY7	"Tocopherol cyclase, chloroplastic"	AT4G32770.1	"tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) "	LOC_Os02g17650.1	"tocopherol cyclase, chloroplast precursor, putative, expressed"	AC225517_3.1	"Tocopherol cyclase, chloroplast precursor, putative AC225517.6 12507-17093 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108517.1.A1_at	A	A1TS	POPTR_0018s05390	POPTR_0018s05390 (11)	scaffold_18:4931427-4931913(+) (11)	NA	O94673	Uncharacterized membrane protein C776.05	AT5G35460.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g40280.1	"integral membrane protein, putative, expressed"	Medtr2g046410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108518.1.A1_at	A	A1TS	POPTR_0001s21680	POPTR_0001s21680 (10)	scaffold_1:20227445-20228045(-) (10)	NA	Q8BJ56	Patatin-like phospholipase domain-containing protein 2	AT1G33270.1	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 	LOC_Os11g34370.1	"phospholipase, patatin family, putative, expressed"	Medtr2g007800.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.10854.1.S1_s_at	A	A1TS	POPTR_0001s33990	POPTR_0001s33990 (11)	scaffold_1:32138443-32138869(-) (11)	NA	Q9LK32	Uncharacterized protein At3g27210	AT3G01860.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g69100.1	expressed protein	Medtr6g025370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108545.1.S1_s_at	A	A2TS	POPTR_0001s32370	POPTR_0017s08380 (11)//POPTR_0001s32370 (11)	scaffold_1:30726695-30727733(+) (11)//scaffold_17:6894195-6894793(+) (11)	NA	Q6GL77	UBX domain-containing protein 1	AT1G04850.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os02g30180.1	"ZOS2-07 - C2H2 zinc finger protein, expressed"	Medtr4g133680.1	"Ubiquitin-associated; PUG; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108572.1.A1_s_at	A	A1TS	POPTR_0006s27060	POPTR_0006s27060 (11)	scaffold_6:25081583-25082973(-) (11)	NA	Q8GY91	Putative L-ascorbate peroxidase 6	AT4G32320.1	ascorbate peroxidase 6 	LOC_Os08g41090.1	"peroxidase precursor, putative, expressed"	Medtr3g137110.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.108576.1.A1_at	A	A1MS	POPTR_0003s07370	POPTR_0003s07370 (11)	scaffold_3:8925352-8925396(-) (11)	NA	Q9SHC8	Vesicle-associated protein 1-2	AT2G45140.1	plant VAP homolog 12 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr5g012520.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.108576.1.A1_s_at	A	A1TS	POPTR_0003s07370	POPTR_0003s07370 (11)	scaffold_3:8924974-8925310(-) (11)	NA	Q9SHC8	Vesicle-associated protein 1-2	AT2G45140.1	plant VAP homolog 12 	LOC_Os08g06020.1	"MSP domain containing protein, expressed"	Medtr5g012520.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.10859.1.A1_at	A	A1TS	POPTR_0004s10280	POPTR_0004s10280 (10)	scaffold_4:8819094-8819534(+) (11)	NA	NA	NA	AT1G67265.1	ROTUNDIFOLIA like 21 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108598.1.A1_at	A	A1TS	POPTR_0011s02470	POPTR_0011s02470 (11)	scaffold_11:2361737-2362136(-) (11)	NA	Q55B11	Vacuolar protein sorting-associated protein VTA1 homolog	AT4G26750.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os06g20390.1	expressed protein	Medtr5g101280.1	Protein of unknown function DUF605 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10860.1.S1_at	A	A1TS	POPTR_0006s08150	POPTR_0006s08150 (9)	scaffold_6:5920350-5921043(-) (9)	NA	Q0JAA0	Probable protein phosphatase 2C 44	AT4G28400.1	Protein phosphatase 2C family protein 	LOC_Os04g52000.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108603.1.A1_s_at	A	A1TS	POPTR_0006s08670	POPTR_0006s08670 (11)	scaffold_6:6352540-6352717(+) (11)	NA	Q9LZM1	Oxysterol-binding protein-related protein 3A	AT5G02100.1	Oxysterol-binding family protein 	LOC_Os03g16690.1	"oxysterol-binding protein, putative, expressed"	Medtr4g083830.1	Oxysterol-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108604.1.A1_at	A	A1TS	POPTR_0004s02170	POPTR_0004s02170 (11)	scaffold_4:1342980-1343930(-) (11)	NA	Q9NUW8	Tyrosyl-DNA phosphodiesterase 1	AT5G15170.1	tyrosyl-DNA phosphodiesterase-related 	LOC_Os07g34598.1	"tyrosyl-DNA phosphodiesterase 1, putative, expressed"	Medtr7g047060.1	Tyrosyl-DNA phosphodiesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008081|phosphoric diester hydrolase activity	GO:0005634|nucleus
PtpAffx.108613.1.A1_at	A	A1TS	POPTR_0002s19870	POPTR_0002s19870 (11)	scaffold_2:15811841-15812215(-) (11)	NA	Q9ZSZ8	FKBP12-interacting protein of 37 kDa	AT3G54170.1	FKBP12 interacting protein 37 	LOC_Os06g27970.1	"FKBP12-interacting protein of 37 kDa, putative, expressed"	Medtr3g114510.1	"FKBP12-interacting protein of 37 kDa, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108645.1.A1_at	A	A1TS	POPTR_0005s12700	POPTR_0005s12700 (11)	scaffold_5:9444319-9444410(-) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT4G36690.1	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.108650.1.A1_at	A	A1MA	POPTR_0002s17080	POPTR_0002s17080 (11)	scaffold_2:12857760-12858112(-) (11)	NA	NA	NA	AT3G61680.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g43140.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.108661.1.A1_at	A	A1TS	POPTR_0016s15020	POPTR_0016s15020 (11)	scaffold_16:14062431-14062770(-) (11)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os12g02820.1	"cytidylyltransferase domain containing protein, expressed"	Medtr7g081050.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.108686.1.A1_at	A	A1TS	POPTR_0014s01630	POPTR_0014s01630 (11)	scaffold_14:1519019-1519644(-) (11)	NA	Q86TV6	Tetratricopeptide repeat protein 7B	AT1G27460.1	no pollen germination related 1 	LOC_Os03g10350.2	"NPGR1, putative, expressed"	Medtr1g023320.1	"Peptidase, cysteine peptidase active site; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108688.1.A1_at	A	A1MA	POPTR_0001s16420	POPTR_0001s16420 (11)	scaffold_1:13224719-13225097(-) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10869.1.S1_at	A	A1TS	POPTR_0002s15520	POPTR_0002s15520 (11)	scaffold_2:11595328-11595750(-) (11)	NA	Q8LG03	F-box protein At4g00755	AT4G00755.2	F-box family protein 	LOC_Os03g02560.1	"cyclin-like F-box, putative, expressed"	Medtr7g083800.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10869.2.S1_a_at	A	A1TS	POPTR_0014s07240	POPTR_0014s07240 (11)	scaffold_14:5474935-5475232(+) (11)	NA	Q8LG03	F-box protein At4g00755	AT4G00755.2	F-box family protein 	LOC_Os03g02560.1	"cyclin-like F-box, putative, expressed"	Medtr7g083800.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10869.3.S1_a_at	A	A1TS	POPTR_0014s07240	POPTR_0014s07240 (11)	scaffold_14:5472043-5472224(+) (11)	NA	Q8LG03	F-box protein At4g00755	AT4G00755.2	F-box family protein 	LOC_Os03g02560.1	"cyclin-like F-box, putative, expressed"	Medtr7g083800.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108694.1.A1_at	A	A1TS	POPTR_0001s01580	POPTR_0001s01580 (11)	scaffold_1:1175702-1175825(-) (11)	NA	Q8IUF1	COBW domain-containing protein 2	AT1G80480.1	plastid transcriptionally active 17 	LOC_Os04g51100.1	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108694.1.A1_s_at	A	A1TS	POPTR_0001s01580	POPTR_0001s01580 (11)	scaffold_1:1175818-1177437(-) (11)	NA	Q8IUF1	COBW domain-containing protein 2	AT1G80480.1	plastid transcriptionally active 17 	LOC_Os04g51100.1	"COBW domain containing protein, putative, expressed"	Medtr5g046890.1	"Cobalamin synthesis protein, P47K; Cobalamin synthesis CobW, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108711.1.A1_at	A	A1TS	POPTR_0006s02720	POPTR_0006s02720 (11)	scaffold_6:1731385-1731528(+) (11)	NA	NA	NA	AT3G56820.1	unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os01g59520.3	"cupin, RmlC-type, putative, expressed"	Medtr7g104810.1	"Cupin, RmlC-type, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108714.1.A1_at	A	A1TS	POPTR_0010s15020	POPTR_0010s15020 (11)	scaffold_10:14425916-14426575(+) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G38895.3	RING/U-box superfamily protein 	LOC_Os11g41140.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108741.1.A1_at	A	A1TS	POPTR_0012s08300	POPTR_0012s08300 (11)	scaffold_12:9368183-9368699(-) (11)	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT3G48190.1	ataxia-telangiectasia mutated 	LOC_Os05g38810.1	"PWWP domain containing protein, expressed"	Medtr6g005730.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108748.1.A1_a_at	A	A1TS	POPTR_0002s00610	POPTR_0002s00610 (11)	scaffold_2:270311-270738(+) (11)	NA	Q9I8B3	RNA-binding protein 24-B	AT1G76460.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g48340.2	"RNA recognition motif containing protein, putative, expressed"	Medtr3g159840.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.108766.1.A1_at	A	A1MS	POPTR_0004s00790	POPTR_0004s00790 (10)	scaffold_4:359263-361242(-) (11)	NA	NA	NA	AT2G32580.1	Protein of unknown function (DUF1068) 	LOC_Os03g56610.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108774.1.A1_at	A	A1TA	POPTR_0002s01230	POPTR_0002s01230 (11)	scaffold_2:649703-650254(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G76270.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr5g106640.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10878.1.S1_at	A	A1TS	POPTR_0007s03020	POPTR_0007s03020 (11)	scaffold_7:1755674-1756000(+) (11)	NA	NA	NA	AT1G31817.1	Ribosomal L18p/L5e family protein 	LOC_Os03g26860.1	"ribosomal protein, putative, expressed"	Medtr2g125760.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10878.1.S1_s_at	A	A1TS	POPTR_0007s03020	POPTR_0007s03020 (11)	scaffold_7:1755552-1755873(+) (11)	NA	NA	NA	AT1G31817.1	Ribosomal L18p/L5e family protein 	LOC_Os03g26860.1	"ribosomal protein, putative, expressed"	Medtr2g125760.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10880.1.A1_at	A	A1TS	POPTR_0006s28320	POPTR_0006s28320 (11)	scaffold_6:26034344-26034799(-) (11)	NA	O81772	Peroxidase 46	AT2G24800.1	Peroxidase superfamily protein 	LOC_Os04g42100.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g138570.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.108855.1.S1_s_at	A	A1TS	POPTR_0004s09180	POPTR_0004s09180 (11)	scaffold_4:7690005-7691125(+) (11)	NA	Q8RX28	Histone deacetylase 5	AT5G61060.1	histone deacetylase 5 	LOC_Os07g41090.1	"histone deacetylase, putative, expressed"	Medtr2g105140.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108857.1.S1_at	A	A1TS	POPTR_0008s06090	POPTR_0008s06090 (9)	scaffold_8:3602772-3604165(+) (9)	NA	P48760	"Folylpolyglutamate synthase, mitochondrial"	AT5G05980.2	DHFS-FPGS homolog B 	LOC_Os03g02030.1	"folylpolyglutamate synthase, mitochondrial precursor, putative, expressed"	Medtr5g088540.1	Folylpolyglutamate synthetase 	NA	NA	GO:0016020|membrane
PtpAffx.108865.1.S1_at	A	A1TS	POPTR_0009s08580	POPTR_0009s08580 (9)	scaffold_9:7810174-7810779(+) (9)	NA	NA	NA	AT4G33690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 543 Blast hits to 512 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 54; Plants - 72; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). 	LOC_Os07g11290.1	expressed protein	Medtr2g010570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10889.1.S1_s_at	A	A1TS	POPTR_0003s06370	POPTR_0003s06370 (11)	scaffold_3:7862196-7862376(+) (11)	NA	Q9ZRA4	Auxin-binding protein ABP19a	AT1G72610.1	germin-like protein 1 	LOC_Os08g35760.1	"Cupin domain containing protein, expressed"	Medtr8g024770.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.108897.1.S1_at	A	A1TS	POPTR_0005s26810	POPTR_0005s26810 (10)	scaffold_5:24680668-24682622(+) (10)	NA	NA	NA	AT4G35750.1	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein 	LOC_Os04g47330.1	"rho-GTPase-activating protein-related, putative, expressed"	Medtr5g023170.1	"Rho-GTPase-activating protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.108918.1.S1_s_at	A	A1TS	POPTR_0013s06080	POPTR_0013s06080 (11)	scaffold_13:4492108-4493300(-) (11)	NA	Q9SRV2	Histone-lysine N-methyltransferase SUVR3	AT3G03750.2	SET domain protein 20 	LOC_Os01g56540.1	"histone-lysine N-methyltransferase SUVR3, putative, expressed"	Medtr8g147270.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.10892.2.S1_a_at	A	A2TS	POPTR_0001s27160	POPTR_0001s27160 (11)//POPTR_0009s06410 (11)	scaffold_1:26090799-26092548(-) (11)//scaffold_9:6196621-6198306(-) (11)	NA	Q9LDC0	42 kDa peptidyl-prolyl isomerase	AT3G21640.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os11g05090.1	"peptidyl-prolyl isomerase, putative, expressed"	Medtr4g049920.1	"Peptidylprolyl isomerase, FKBP-type; "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.10892.3.S1_a_at	A	A1TS	POPTR_0009s06410	POPTR_0009s06410 (11)	scaffold_9:6195294-6196101(-) (11)	NA	Q9LDC0	42 kDa peptidyl-prolyl isomerase	AT3G21640.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os11g05090.1	"peptidyl-prolyl isomerase, putative, expressed"	Medtr4g049920.1	"Peptidylprolyl isomerase, FKBP-type; "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.108942.1.S1_s_at	A	A1TS	POPTR_0014s15870	POPTR_0014s15870 (11)	scaffold_14:11957894-11959742(-) (11)	NA	Q84JU4	Protein-tyrosine-phosphatase IBR5	AT2G04550.1	indole-3-butyric acid response 5 	LOC_Os06g20340.1	"dual specificity protein phosphatase, putative, expressed"	Medtr5g092050.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.108947.1.S1_at	A	A1TS	POPTR_0017s04540	POPTR_0017s04540 (11)	scaffold_17:3499841-3500270(-) (11)	NA	Q9FE67	Ethylene-responsive transcription factor 9	AT5G44210.1	erf domain protein 9 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.108967.1.S1_at	A	A1TS	POPTR_0015s10750	POPTR_0015s10750 (11)	scaffold_15:11575196-11575744(-) (11)	NA	O75643	U5 small nuclear ribonucleoprotein 200 kDa helicase	AT1G20960.2	"U5 small nuclear ribonucleoprotein helicase, putative "	LOC_Os02g01740.1	"U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed"	Medtr2g076960.1	AAA ATPase; Sec63; ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.108979.1.S1_s_at	A	A1TS	POPTR_0030s00390	POPTR_0030s00390 (11)	scaffold_30:145338-146455(-) (11)//scaffold_5:3345659-3354655(-) (9)	POPTR_0005s05020 (8)//POPTR_0005s05040 (8)	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os12g42980.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.109009.1.S1_at	A	A1TS	POPTR_0002s02170	POPTR_0002s02170 (10)	scaffold_2:1202384-1202897(-) (11)	NA	NA	NA	AT1G75810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 13 Blast hits to 13 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g031430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109010.1.S1_s_at	A	A1TS	POPTR_0008s12580	POPTR_0008s12580 (11)	scaffold_8:8145098-8146020(+) (11)	NA	Q8T7K0	ALG-2 interacting protein X	AT1G15130.1	Endosomal targeting BRO1-like domain-containing protein 	LOC_Os10g35250.1	"vacuolar protein-sorting protein bro1, putative, expressed"	Medtr1g137820.1	"ALG2-interacting protein X, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109035.1.S1_s_at	A	A1TS	POPTR_0004s04350	POPTR_0004s04350 (11)	scaffold_4:3112630-3113460(-) (11)	POPTR_0011s05240 (8)	Q8VY10	Probable ubiquitin-conjugating enzyme E2 24	AT2G33770.1	phosphate 2 	LOC_Os05g48390.1	"ubiquitin conjugating enzyme protein, putative, expressed"	Medtr2g017250.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.109036.1.A1_at	A	A1TS	POPTR_0008s19450	POPTR_0008s19450 (11)	scaffold_8:13405272-13406317(+) (11)	NA	B0G107	Protein SAMHD1 homolog	AT5G40270.1	HD domain-containing metal-dependent phosphohydrolase family protein 	LOC_Os01g01920.2	"HD domain containing protein 2, putative, expressed"	Medtr5g035750.1	"Metal-dependent phosphohydrolase, HD region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109047.1.A1_a_at	A	A1TS	POPTR_0010s07300	POPTR_0010s07300 (11)	scaffold_10:8413779-8413817(+) (11)	NA	NA	NA	AT4G13540.1	unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23930.1); Has 4658 Blast hits to 3455 proteins in 431 species: Archae - 39; Bacteria - 387; Metazoa - 1842; Fungi - 436; Plants - 133; Viruses - 38; Other Eukaryotes - 1783 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109047.2.A1_at	A	A1MS	POPTR_0010s07300	POPTR_0010s07300 (11)	scaffold_10:8413825-8414046(+) (11)	NA	NA	NA	AT4G13540.1	unknown protein; INVOLVED IN: N-terminal protein myristoylation; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23930.1); Has 4658 Blast hits to 3455 proteins in 431 species: Archae - 39; Bacteria - 387; Metazoa - 1842; Fungi - 436; Plants - 133; Viruses - 38; Other Eukaryotes - 1783 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109063.1.A1_at	A	A1TS	POPTR_0003s13700	POPTR_0003s13700 (11)	scaffold_3:14011092-14012013(+) (11)	NA	Q9BZJ0	Crooked neck-like protein 1	AT5G41770.1	"crooked neck protein, putative / cell cycle protein, putative "	LOC_Os05g22260.1	"crooked neck, putative, expressed"	Medtr5g009540.1	"RNA-processing protein, HAT helix "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	GO:0005622|intracellular
PtpAffx.109064.1.S1_at	A	A1TS	POPTR_0006s04760	POPTR_0006s04760 (10)	scaffold_6:3294081-3295675(-) (10)	NA	O22229	NADPH-dependent thioredoxin reductase 3	AT2G41680.1	NADPH-dependent thioredoxin reductase C 	LOC_Os07g46410.1	"bifunctional thioredoxin reductase/thioredoxin, putative, expressed"	Medtr5g024830.1	"Pyridine nucleotide-disulphide oxidoreductase, class-II "	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.109082.1.S1_at	A	A1TS	POPTR_0016s14310	POPTR_0016s14310 (10)	scaffold_16:13561732-13562880(-) (10)	NA	Q9ZUC1	"Quinone oxidoreductase-like protein At1g23740, chloroplastic"	AT1G23740.1	"Oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os08g29170.1	"dehydrogenase, putative, expressed"	Medtr6g012770.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.10911.1.S1_at	A	A1TS	POPTR_0011s12270	POPTR_0011s12270 (11)	scaffold_11:15032971-15033693(+) (11)	NA	P24805	Stem-specific protein TSJT1	AT4G27450.1	Aluminium induced protein with YGL and LRDR motifs 	LOC_Os03g58170.1	"stem-specific protein TSJT1, putative, expressed"	Medtr2g014830.1	"Stem-specific protein TSJT1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109115.1.A1_at	A	A1MS	POPTR_0010s20490	POPTR_0010s20490 (10)	scaffold_10:18050096-18050603(+) (10)	NA	Q54MZ4	Mitochondrial substrate carrier family protein B	AT3G55640.1	Mitochondrial substrate carrier family protein 	LOC_Os03g16080.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g088430.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10912.1.S1_at	A	A1TS	POPTR_0001s28200	POPTR_0001s28200 (11)	scaffold_1:26964897-26964931(+) (11)	NA	Q8BL80	Rho GTPase-activating protein 22	AT5G19390.2	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g096580.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.10912.1.S1_s_at	A	A2TS	POPTR_0001s28200	POPTR_0009s07390 (11)//POPTR_0001s28200 (11)	scaffold_1:26963264-26964950(+) (11)//scaffold_9:6905490-6907633(+) (11)	NA	Q8BL80	Rho GTPase-activating protein 22	AT5G19390.2	Rho GTPase activation protein (RhoGAP) with PH domain 	LOC_Os07g46450.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g096580.1	RhoGAP; Pleckstrin homology-type 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.109125.1.A1_at	A	A1TS	POPTR_0011s14320	POPTR_0011s14320 (11)	scaffold_11:16767256-16767493(-) (11)	NA	A2YBX5	Protein kinase G11A	AT3G14370.1	Protein kinase superfamily protein 	LOC_Os03g14840.1	"AGC_PVPK_like_kin82y.8 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g119560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1092.1.A1_s_at	A	A1TS	POPTR_0019s13640	POPTR_0019s13640 (11)	scaffold_19:14500916-14500960(+) (11)	POPTR_0063s00200 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109285.1.S1_at	A	A1TS	POPTR_0006s24610	POPTR_0006s24610 (11)	scaffold_6:23204528-23205556(-) (11)	NA	NA	NA	AT5G11810.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os02g04260.1	expressed protein	Medtr1g020560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1093.1.S1_at	A	A1TS	POPTR_0004s23510	POPTR_0004s23510 (11)	scaffold_4:22213178-22213533(+) (11)	NA	O04486	Ras-related protein RABA2a	AT1G09630.1	RAB GTPase 11C 	LOC_Os05g01480.1	"ras-related protein, putative, expressed"	Medtr2g005340.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.10930.1.A1_at	A	A1TS	POPTR_0012s07240	POPTR_0012s07240 (11)	scaffold_12:8023001-8023328(+) (11)	NA	NA	NA	AT1G74730.1	Protein of unknown function (DUF1118) 	LOC_Os01g40310.1	expressed protein	Medtr3g036520.1	Protein of unknown function DUF1118 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10930.2.S1_at	A	A1TS	POPTR_0015s07630	POPTR_0015s07630 (10)	scaffold_15:8893047-8893546(+) (10)	NA	NA	NA	AT1G74730.1	Protein of unknown function (DUF1118) 	LOC_Os01g40310.1	expressed protein	Medtr3g036520.1	Protein of unknown function DUF1118 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109301.1.S1_at	A	A1TS	POPTR_0006s05230	POPTR_0006s05230 (10)	scaffold_6:3685041-3685428(-) (10)	NA	P93756	G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1	AT2G41890.1	curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein 	LOC_Os03g62180.3	"lectin protein kinase family protein, putative, expressed"	Medtr7g110670.1	"Apple; Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin "	NA	GO:0005529|sugar binding	NA
PtpAffx.10934.1.A1_a_at	A	A1TS	POPTR_0017s02890	POPTR_0017s02890 (11)	scaffold_17:2090893-2092034(-) (11)	NA	Q9JJW6	RNA and export factor-binding protein 2	AT5G37720.2	ALWAYS EARLY 4 	LOC_Os08g33120.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g087650.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.109349.1.S1_s_at	A	A1TS	POPTR_0018s06810	POPTR_0018s06810 (11)	scaffold_18:6860454-6861285(-) (11)	NA	Q9FJV0	Mitogen-activated protein kinase kinase 6	AT5G56580.1	MAP kinase kinase 6 	LOC_Os01g32660.1	"STE_MEK_ste7_MAP2K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr6g005140.1	Tyrosine protein kinase; Nuclear transport factor 2 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.10935.1.S1_at	A	A1TS	POPTR_0016s03370	POPTR_0016s03370 (11)	scaffold_16:1747675-1748915(-) (11)	NA	Q9M0N8	Mitotic-spindle organizing protein 1B	AT4G09550.1	AtGCP3 interacting protein 1 	LOC_Os03g60900.1	expressed protein	Medtr8g133830.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109370.1.S1_s_at	A	A1TS	POPTR_0015s05430	POPTR_0015s05430 (11)	scaffold_15:5785670-5786062(+) (11)	NA	P92973	Protein CCA1	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109379.1.S1_at	A	A1TS	POPTR_0006s23540	POPTR_0006s23540 (11)	scaffold_6:22254525-22256226(+) (11)	NA	NA	NA	AT2G26270.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g26870.1	"BRCA1 C Terminus domain containing protein, expressed"	Medtr3g139010.1	BRCT 	NA	NA	GO:0005622|intracellular
PtpAffx.109384.1.A1_at	A	A1TS	POPTR_0009s08480	POPTR_0009s08480 (10)	scaffold_9:7747059-7748733(-) (10)	NA	Q9LXC9	"Soluble inorganic pyrophosphatase 1, chloroplastic"	AT5G09650.1	pyrophosphorylase 6 	LOC_Os02g52940.2	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr2g010460.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
PtpAffx.109399.1.S1_at	A	A1MS	POPTR_0002s24510	POPTR_0002s24510 (11)	scaffold_2:21869481-21869894(-) (11)	NA	Q9FKC3	"Pentatricopeptide repeat-containing protein At5g48730, chloroplastic"	AT5G48730.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os06g07550.1	"PPR repeat domain containing protein, putative, expressed"	Medtr3g039890.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10942.1.S1_at	A	A1TS	POPTR_0018s13870	POPTR_0018s13870 (11)	scaffold_18:14161698-14161829(-) (11)	NA	Q9LL84	DNA ligase 4	AT5G57160.1	DNA ligase IV 	LOC_Os04g51700.1	"DNA ligase I, ATP-dependent family protein, expressed"	Medtr2g042770.1	"ATP-dependent DNA ligase; BRCT; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006310|DNA recombination||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003910|DNA ligase (ATP) activity||GO:0005524|ATP binding	GO:0005622|intracellular
PtpAffx.109438.1.S1_at	A	A1TS	POPTR_0008s09810	POPTR_0008s09810 (10)	scaffold_8:6090068-6090587(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.109438.2.S1_a_at	A	A1TS	POPTR_0008s09810	POPTR_0008s09810 (11)	scaffold_8:6089507-6089699(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.109440.1.S1_at	A	A2TS	POPTR_0004s15320	POPTR_0004s15320 (11)//POPTR_0004s15330 (10)	scaffold_4:15974979-15975599(-) (11)//scaffold_4:15978706-15979328(-) (10)	NA	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.10946.1.S1_s_at	A	A1TS	POPTR_0003s04180	POPTR_0003s04180 (11)	scaffold_3:4887353-4887828(-) (11)	NA	Q9SGG3	Putative phospholipid-transporting ATPase 5	AT1G72700.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os06g36990.1	"phospholipid-transporting ATPase 4, putative, expressed"	Medtr2g120840.1	"ATPase, E1-E2 type "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.10948.1.S1_a_at	A	A1TS	POPTR_0003s13650	POPTR_0003s13650 (11)	scaffold_3:13978669-13978944(-) (11)	NA	NA	NA	AT5G41761.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g33200.1	expressed protein	Medtr2g030430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109483.1.A1_s_at	A	A1TS	POPTR_0001s47450	POPTR_0001s47450 (11)	scaffold_1:47650542-47650772(-) (11)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.109536.1.S1_s_at	A	A1TS	POPTR_0002s02340	POPTR_0002s02340 (11)	scaffold_2:1323785-1324154(+) (11)	POPTR_0005s26140 (8)	P18025	Tubulin beta-1 chain	AT1G20010.1	tubulin beta-5 chain 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.10956.1.S1_a_at	A	A1TS	POPTR_0017s08410	POPTR_0017s08410 (11)	scaffold_17:6928429-6928662(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G04910.1	O-fucosyltransferase family protein 	LOC_Os11g29120.1	"growth regulator related protein, putative, expressed"	Medtr1g129940.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10956.1.S1_at	A	A1TS	POPTR_0017s08410	POPTR_0017s08410 (10)	scaffold_17:6928324-6928820(-) (11)	POPTR_0001s32420 (8)	Q8W486	DUF246 domain-containing protein At1g04910	AT1G04910.1	O-fucosyltransferase family protein 	LOC_Os11g29120.1	"growth regulator related protein, putative, expressed"	Medtr1g129940.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10956.2.S1_at	A	A1TS	POPTR_0017s08410	POPTR_0017s08410 (9)	scaffold_17:6927776-6928121(-) (9)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G04910.1	O-fucosyltransferase family protein 	LOC_Os11g29120.1	"growth regulator related protein, putative, expressed"	Medtr1g129940.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109560.1.S1_at	A	A1TS	POPTR_0018s12960	POPTR_0018s12960 (11)	scaffold_18:13422556-13423778(-) (11)	NA	Q9ZQG9	"Glucan endo-1,3-beta-glucosidase 14"	AT2G26600.1	Glycosyl hydrolase superfamily protein 	LOC_Os06g40490.1	"glycosyl hydrolases family 17, putative, expressed"	Medtr8g120870.1	"Glycoside hydrolase, family 17 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.10960.1.S1_at	A	A1TS	POPTR_0003s11910	POPTR_0003s11910 (11)	scaffold_3:12639878-12640709(+) (11)	POPTR_0001s08420 (7)	Q8H112	"PGR5-like protein 1A, chloroplastic"	AT4G22890.2	PGR5-LIKE A 	LOC_Os03g64020.2	expressed protein	Medtr5g011350.1	"PGR5-like protein 1A, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109609.1.S1_at	A	A1TS	POPTR_0006s00500	POPTR_0006s00500 (11)	scaffold_6:256176-256634(-) (11)	NA	Q8R3G1	Nuclear inhibitor of protein phosphatase 1	AT5G47790.1	SMAD/FHA domain-containing protein  	LOC_Os08g23680.3	"FHA domain containing protein, putative, expressed"	Medtr2g032980.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109739.1.S1_s_at	A	A1TS	POPTR_0014s18380	POPTR_0014s18380 (11)	scaffold_14:15483488-15483869(+) (11)	NA	Q9LN49	3-ketoacyl-CoA synthase 4	AT1G19440.1	3-ketoacyl-CoA synthase 4 	LOC_Os05g49290.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr4g095830.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.109764.1.S1_s_at	A	A1TS	POPTR_0005s23630	POPTR_0005s23630 (11)	scaffold_5:22343391-22344987(-) (11)	NA	Q8RXY0	Probable inactive protein kinase At3g63330	AT3G63340.1	Protein phosphatase 2C family protein 	LOC_Os11g37540.1	"protein phosphatase 2C, putative, expressed"	Medtr1g083790.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.109766.1.S1_at	A	A1TS	POPTR_0001s41400	POPTR_0001s41400 (9)	scaffold_1:41022664-41023493(-) (9)	NA	NA	NA	AT3G15480.1	Protein of unknown function (DUF1218) 	LOC_Os07g27810.1	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109774.1.S1_at	A	A1TS	POPTR_0014s10830	POPTR_0014s10830 (9)	scaffold_14:8096403-8098323(+) (9)	NA	P18549	Isopenicillin N epimerase	AT3G62130.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g18640.1	"aminotransferase, putative, expressed"	Medtr1g105840.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109790.1.S1_at	A	A1TS	POPTR_0010s00560	POPTR_0010s00560 (11)	scaffold_10:309466-309891(+) (11)	NA	NA	NA	AT1G48300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os05g04620.1	expressed protein	Medtr8g133810.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109790.2.S1_a_at	A	A1TS	POPTR_0010s00560	POPTR_0010s00560 (11)	scaffold_10:308163-308401(+) (11)	NA	NA	NA	AT1G48300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 96 Blast hits to 87 proteins in 37 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 2; Plants - 65; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os05g04620.1	expressed protein	Medtr8g133810.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10980.1.S1_at	A	A1TS	POPTR_0010s22880	POPTR_0010s22880 (11)	scaffold_10:19629176-19629302(-) (11)	NA	Q9SP55	V-type proton ATPase subunit G	AT3G01390.2	vacuolar membrane ATPase 10 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
PtpAffx.10980.1.S1_s_at	A	A1TS	POPTR_0010s22880	POPTR_0010s22880 (11)	scaffold_10:19629151-19630751(-) (11)	NA	Q9SP55	V-type proton ATPase subunit G	AT3G01390.2	vacuolar membrane ATPase 10 	LOC_Os04g51270.2	"vacuolar ATPase G subunit, putative, expressed"	Medtr7g121440.1	Vacuolar (H+)-ATPase G subunit 	GO:0015992|proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	GO:0016471|vacuolar proton-transporting V-type ATPase complex
PtpAffx.109833.1.S1_at	A	A1TS	POPTR_0002s24710	POPTR_0002s24710 (10)	scaffold_2:21999011-22001037(-) (10)	NA	NA	NA	AT3G07210.1	unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). 	LOC_Os01g68830.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109857.1.S1_at	A	A1TS	POPTR_0005s07710	POPTR_0005s07710 (11)	scaffold_5:5279900-5279946(-) (11)	NA	Q6YC49	UDP-N-acetylglucosamine transporter	AT5G65000.1	Nucleotide-sugar transporter family protein 	LOC_Os02g36390.4	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr5g106860.1	Nucleotide-sugar transporter 	NA	NA	GO:0016020|membrane
PtpAffx.109871.1.S1_at	A	A1TS	POPTR_0010s11640	POPTR_0010s11640 (10)	scaffold_10:11824652-11825151(-) (10)	NA	NA	NA	AT1G68060.1	microtubule-associated proteins 70-1 	LOC_Os02g50320.1	"ATMAP70 protein, putative, expressed"	Medtr4g157060.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1099.1.A1_s_at	A	A1TS	POPTR_0018s06680	POPTR_0018s06680 (11)	scaffold_18:6726805-6727266(+) (11)	NA	O82197	Vacuolar protein sorting-associated protein 32 homolog 1	AT2G19830.1	SNF7 family protein 	LOC_Os06g40620.2	"SNF7 domain containing protein, putative, expressed"	Medtr4g160490.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.1099.2.S1_s_at	A	A2TS	POPTR_0006s25990	POPTR_0006s25990 (11)//POPTR_0018s00830 (11)	scaffold_18:725431-726074(-) (11)//scaffold_6:24279162-24279812(-) (11)	NA	Q8LFH7	60S ribosomal protein L37-1	AT1G15250.1	Zinc-binding ribosomal protein family protein 	LOC_Os02g56990.1	"ribosomal protein L37, putative, expressed"	Medtr4g009180.1	Ribosomal protein L37e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.10990.1.S1_at	A	A1TS	POPTR_0018s09170	POPTR_0018s09170 (9)	scaffold_18:10051537-10052738(-) (9)	NA	Q8W593	"Probable lactoylglutathione lyase, chloroplast"	AT1G67280.1	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein 	LOC_Os05g14194.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10990.2.S1_a_at	A	A2TS	POPTR_0006s16370	POPTR_0006s16370 (11)//POPTR_0018s09170 (11)	scaffold_18:10054981-10055179(-) (11)//scaffold_6:14306003-14306224(+) (11)	NA	Q8W593	"Probable lactoylglutathione lyase, chloroplast"	AT1G67280.1	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein 	LOC_Os05g14194.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.10990.2.S1_at	A	A1TS	POPTR_0006s16370	POPTR_0006s16370 (11)	scaffold_6:14305921-14305994(+) (11)	NA	Q8W593	"Probable lactoylglutathione lyase, chloroplast"	AT1G67280.1	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein 	LOC_Os05g14194.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109909.1.S1_at	A	A1TS	POPTR_0018s06820	POPTR_0018s06820 (9)	scaffold_18:6871428-6872308(+) (10)	NA	Q8VYZ3	Probable pectinesterase 53	AT5G19730.1	Pectin lyase-like superfamily protein 	LOC_Os01g53990.1	"pectinesterase, putative, expressed"	Medtr4g160050.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.109914.1.S1_s_at	A	A1TS	POPTR_0014s11330	POPTR_0014s11330 (11)	scaffold_14:8430618-8431249(-) (11)	NA	NA	NA	AT1G02380.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01960.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr1g106390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109942.1.S1_s_at	A	A1TS	POPTR_0002s16160	POPTR_0002s16160 (11)	scaffold_2:12082054-12082714(+) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os09g39640.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.109943.1.A1_at	A	A1TS	POPTR_0008s06230	POPTR_0008s06230 (9)	scaffold_8:3665806-3666109(-) (9)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G05940.1	ROP guanine nucleotide exchange factor 5 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr3g092590.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.109947.1.A1_at	A	A1TS	POPTR_0002s25090	POPTR_0002s25090 (10)	scaffold_2:22300759-22301618(+) (10)	NA	NA	NA	AT3G07400.1	lipase class 3 family protein 	LOC_Os02g28040.1	"lipase, putative, expressed"	Medtr8g012090.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.109949.1.A1_at	A	A1TS	POPTR_0009s03090	POPTR_0009s03090 (10)	scaffold_9:3786098-3787068(+) (10)	NA	Q3SZ21	Ribonuclease P protein subunit p30	AT5G59980.2	Polymerase/histidinol phosphatase-like 	LOC_Os11g01074.3	"RNase P subunit p30, putative, expressed"	Medtr2g114050.1	RNase P subunit p30 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004540|ribonuclease activity	NA
PtpAffx.109950.1.A1_at	A	A1TS	POPTR_0014s17140	POPTR_0014s17140 (11)	scaffold_14:13291257-13291548(-) (11)	NA	NA	NA	AT4G12750.1	Homeodomain-like transcriptional regulator 	LOC_Os01g48180.1	"DDT domain containing protein, putative, expressed"	Medtr4g161050.1	DDT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.109957.1.A1_at	A	A1TS	POPTR_0006s25380	POPTR_0006s25380 (11)	scaffold_6:23770938-23772177(+) (11)	NA	O82318	Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790	AT2G25790.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os02g02140.1	"receptor protein kinase CLAVATA1 precursor, putative, expressed"	Medtr3g130450.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.11.1.A1_at	A	A1TS	POPTR_0010s19560	POPTR_0010s19560 (10)	scaffold_10:17434814-17435329(-) (10)	NA	O67588	Chaperone protein ClpB	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110.1.S1_at	A	A1TS	POPTR_0016s03110	POPTR_0016s03110 (11)	scaffold_16:1555989-1556468(-) (11)	NA	Q66GN2	Lectin-domain containing receptor kinase A4.3	AT5G65600.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os08g02996.1	"receptor-like kinase, putative, expressed"	Medtr5g037020.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.110040.1.S1_at	A	A1TS	POPTR_0015s01460	POPTR_0015s01460 (10)	scaffold_15:893437-893670(-) (10)	NA	Q84WF5	Probable VAMP-like protein At1g33475	AT5G52990.1	SNARE-like superfamily protein 	LOC_Os08g44430.2	"vesicle-associated membrane protein 727, putative, expressed"	Medtr3g123790.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110058.1.A1_at	A	A1TS	POPTR_0019s05970	POPTR_0019s05970 (11)	scaffold_19:6394266-6394786(-) (11)	NA	NA	NA	AT5G17510.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g27994.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11008.1.A1_at	A	A1TS	POPTR_0006s03430	POPTR_0006s03430 (11)	scaffold_6:2216387-2217710(-) (11)	NA	Q9M0N8	Mitotic-spindle organizing protein 1B	AT4G09550.1	AtGCP3 interacting protein 1 	LOC_Os03g60900.1	expressed protein	Medtr8g133830.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110084.1.A1_s_at	A	A1TS	POPTR_0003s18970	POPTR_0003s18970 (10)	scaffold_3:17843583-17850609(+) (10)//scaffold_393:16081-16393(+) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g025000.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11009.1.S1_a_at	A	A1TS	POPTR_0015s01650	POPTR_0015s01650 (11)	scaffold_15:1060632-1060980(+) (11)	NA	NA	NA	AT5G53420.1	CCT motif family protein 	LOC_Os05g51690.1	"CCT motif family protein, expressed"	Medtr1g009330.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11009.3.S1_at	A	A1MS	POPTR_0010s05840	POPTR_0010s05840 (10)	scaffold_10:7302754-7303087(-) (10)	NA	Q42656	Alpha-galactosidase	AT3G26380.1	Melibiase family protein 	LOC_Os01g33420.1	"glycosyl hydrolase family protein 27, putative, expressed"	Medtr3g102420.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1101.1.A1_at	A	A1TS	POPTR_0004s09060	POPTR_0004s09060 (11)	scaffold_4:7608930-7609427(+) (11)	NA	NA	NA	AT5G17460.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: mitochondrion; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g03500.1	expressed protein	Medtr5g094540.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110120.1.S1_at	A	A1TS	POPTR_0010s05300	POPTR_0010s05300 (10)	scaffold_10:6763033-6764044(+) (10)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.11013.1.A1_at	A	A1TS	POPTR_0012s04100	POPTR_0012s04100 (11)	scaffold_12:3319186-3319237(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g080810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110145.1.A1_at	A	A1TS	POPTR_0008s17460	POPTR_0008s17460 (9)	scaffold_8:11736811-11737152(+) (9)	NA	P54697	Myosin-J heavy chain	AT5G43900.3	myosin 2 	LOC_Os02g34080.1	"myosin, putative, expressed"	Medtr3g139210.1	"IQ calmodulin-binding region; Myosin head, motor region; Dilute; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.110147.1.A1_s_at	A	A1TS	POPTR_0025s00750	POPTR_0025s00750 (11)	scaffold_25:410088-410252(+) (11)	NA	Q3EAR7	Probable glycosyltransferase At3g42180	AT3G42180.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr8g121620.1	Exostosin-like 	NA	NA	GO:0016021|integral to membrane
PtpAffx.110158.2.A1_s_at	A	A1TS	POPTR_0003s15810	POPTR_0003s15810 (11)	scaffold_3:15516331-15516561(+) (11)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G47910.1	respiratory burst oxidase homologue D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.110159.1.A1_at	A	A1TS	POPTR_0015s12100	POPTR_0015s12100 (9)	scaffold_15:12514728-12514865(+) (9)	NA	Q9FLT2	Inositol polyphosphate multikinase beta	AT5G61760.1	inositol polyphosphate kinase 2 beta 	LOC_Os02g32370.1	"inositol hexaphosphate kinase, putative, expressed"	Medtr8g043170.1	Inositol polyphosphate kinase 	NA	GO:0008440|inositol trisphosphate 3-kinase activity	NA
PtpAffx.11018.2.A1_a_at	A	A2TS	POPTR_0001s26930	POPTR_0009s06160 (11)//POPTR_0001s26930 (11)	scaffold_1:25914258-25914492(-) (11)//scaffold_9:6028427-6028670(-) (11)	NA	Q869R1	CTL-like protein DDB_G0274487	AT5G13760.1	Plasma-membrane choline transporter family protein 	LOC_Os07g46240.1	"choline transporter-related, putative, expressed"	Medtr3g040220.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11018.2.A1_at	A	A1TS	POPTR_0001s26930	POPTR_0001s26930 (11)	scaffold_1:25913952-25914584(-) (11)	NA	Q869R1	CTL-like protein DDB_G0274487	AT5G13760.1	Plasma-membrane choline transporter family protein 	LOC_Os07g46240.1	"choline transporter-related, putative, expressed"	Medtr3g040220.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11018.3.A1_a_at	A	A1TS	POPTR_0009s06160	POPTR_0009s06160 (11)	scaffold_9:6028021-6028438(-) (11)	NA	Q4PIP8	Protein PNS1	AT5G13760.1	Plasma-membrane choline transporter family protein 	LOC_Os07g46240.1	"choline transporter-related, putative, expressed"	Medtr3g040220.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11019.1.S1_at	A	A1TS	POPTR_0014s17280	POPTR_0014s17280 (11)	scaffold_14:13397847-13401907(-) (11)	NA	P42814	Ribonuclease 2	AT2G39780.1	ribonuclease 2 	LOC_Os01g67180.1	"ribonuclease T2 family domain containing protein, expressed"	AC233651_10.1	Ribonuclease T2 AC233651.1 24866-22504 F EGN_Mt090430 200	NA	GO:0033897|ribonuclease T2 activity||GO:0003723|RNA binding	NA
PtpAffx.110191.1.S1_s_at	A	A1TS	POPTR_0006s25050	POPTR_0006s25050 (11)	scaffold_6:23493978-23495998(-) (11)	NA	Q8VY07	Clathrin interactor EPSIN 1	AT5G11710.1	ENTH/VHS family protein 	LOC_Os04g51120.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110213.1.S1_at	A	A1TS	POPTR_0005s06870	POPTR_0005s06870 (10)	scaffold_5:4610619-4610936(-) (10)	NA	Q9FY89	Vacuolar protein sorting-associated protein 20 homolog 2	AT5G09260.1	vacuolar protein sorting-associated protein 20.2 	LOC_Os02g38300.1	"SNF7 domain containing protein, putative, expressed"	Medtr3g142880.1	Snf7 	GO:0015031|protein transport	NA	NA
PtpAffx.110314.1.S1_at	A	A1TS	POPTR_0019s08700	POPTR_0019s08700 (9)	scaffold_19:10226296-10226431(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11032.1.S1_at	A	A1TS	POPTR_0008s05640	POPTR_0008s05640 (9)	scaffold_8:3277604-3278263(+) (9)	NA	P48491	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
PtpAffx.110326.1.S1_at	A	A1TS	POPTR_0005s06330	POPTR_0005s06330 (9)	scaffold_5:4200755-4200992(+) (9)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT1G53570.4	mitogen-activated protein kinase kinase kinase 3 	LOC_Os11g10100.1	"STE_MEKK_ste11_MAP3K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr3g143420.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11034.1.S1_a_at	A	A1TS	POPTR_0005s08740	POPTR_0005s08740 (11)	scaffold_5:6092178-6094493(+) (11)	NA	Q9XIK3	"Iron-sulfur assembly protein IscA, chloroplastic"	AT1G10500.1	chloroplast-localized ISCA-like protein 	LOC_Os06g05400.1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"	Medtr4g141040.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110344.1.S1_at	A	A1TS	POPTR_0007s11000	POPTR_0007s11000 (11)	scaffold_7:11250883-11252866(-) (11)	POPTR_0005s18140 (6)	Q8N2M8	"Splicing factor, arginine/serine-rich 16"	AT4G36980.4	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147). "	LOC_Os03g27840.1	"splicing factor, arginine/serine-rich 16, putative, expressed"	Medtr5g017370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110351.1.S1_at	A	A1TS	POPTR_0001s12210	POPTR_0001s12210 (11)	scaffold_1:9452530-9452880(-) (11)	NA	NA	NA	AT4G20090.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g43010.2	"transposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110351.2.S1_a_at	A	A1TS	POPTR_0001s12210	POPTR_0001s12210 (11)	scaffold_1:9454741-9455147(-) (11)	NA	NA	NA	AT4G20090.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g43010.2	"transposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110365.1.S1_s_at	A	A1TS	POPTR_0017s11950	POPTR_0017s11950 (11)	scaffold_17:12047169-12048347(+) (11)	NA	Q9FJL0	Structural maintenance of chromosomes protein 4	AT5G48600.2	structural maintenance of chromosome 3 	LOC_Os05g41750.1	"RecF/RecN/SMC N terminal domain containing protein, expressed"	Medtr8g087350.1	Prefoldin; SMCs flexible hinge 	GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0005694|chromosome
PtpAffx.11040.1.A1_a_at	A	A2TS	POPTR_0004s06300	POPTR_0011s03140 (11)//POPTR_0004s06300 (11)	scaffold_11:3200596-3201515(-) (11)//scaffold_4:4997444-4998894(-) (11)	NA	Q40872	Floral homeotic protein AGAMOUS	AT4G18960.1	K-box region and MADS-box transcription factor family protein  	LOC_Os01g10504.3	"OsMADS3 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g136380.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11040.1.A1_at	A	A1TS	POPTR_0004s06300	POPTR_0004s06300 (9)	scaffold_4:4997276-4999198(-) (11)	NA	Q40872	Floral homeotic protein AGAMOUS	AT4G18960.1	K-box region and MADS-box transcription factor family protein  	LOC_Os01g10504.3	"OsMADS3 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g136380.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.110427.1.S1_at	A	A1TS	POPTR_0010s16290	POPTR_0010s16290 (10)	scaffold_10:15261730-15262151(-) (10)	NA	Q9FY74	Calmodulin-binding transcription activator 1	AT5G09410.1	ethylene induced calmodulin binding protein 	LOC_Os03g09100.1	"calmodulin-binding transcription activator, putative, expressed"	Medtr2g008890.1	IQ calmodulin-binding region; CG-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110427.2.S1_a_at	A	A1TS	POPTR_0010s16290	POPTR_0010s16290 (11)	scaffold_10:15261815-15262676(-) (11)	NA	Q9FY74	Calmodulin-binding transcription activator 1	AT5G09410.1	ethylene induced calmodulin binding protein 	LOC_Os03g09100.1	"calmodulin-binding transcription activator, putative, expressed"	Medtr2g008890.1	IQ calmodulin-binding region; CG-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11051.1.A1_s_at	A	A1TS	POPTR_0007s08330	POPTR_0007s08330 (11)	scaffold_7:6996550-6997160(+) (11)	NA	Q8LGM7	Molybdenum cofactor sulfurase	AT1G16540.1	molybdenum cofactor sulfurase (LOS5) (ABA3) 	LOC_Os06g45860.1	"molybdenum cofactor sulfurase, putative, expressed"	Medtr4g032080.1	"Aminotransferase, class V; MOSC; MOSC, N-terminal beta barrel; "	NA	GO:0003824|catalytic activity||GO:0030151|molybdenum ion binding||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.110534.1.S1_at	A	A1TS	POPTR_0001s05810	POPTR_0001s05810 (11)	scaffold_1:4547626-4547709(-) (11)	NA	NA	NA	AT5G13470.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11054.1.S1_at	A	A1TS	POPTR_0006s07030	POPTR_0006s07030 (9)	scaffold_6:5065465-5067026(-) (9)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os08g12830.1	"cytidylyltransferase domain containing protein, expressed"	Medtr4g161000.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.11054.2.S1_at	A	A1TS	POPTR_0018s13260	POPTR_0018s13260 (11)	scaffold_18:13643416-13645290(-) (11)	NA	Q55BZ4	Ethanolamine-phosphate cytidylyltransferase	AT2G38670.1	phosphorylethanolamine cytidylyltransferase 1 	LOC_Os10g24810.1	"cytidylyltransferase domain containing protein, expressed"	Medtr4g161000.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.1106.1.A1_at	A	A1TS	POPTR_0001s14870	POPTR_0001s14870 (9)	scaffold_1:11680545-11680578(+) (9)	NA	Q9XHS0	40S ribosomal protein S12	AT2G32060.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g05580.1	"ribosomal protein L7Ae, putative, expressed"	Medtr5g012950.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1106.1.A1_s_at	A	A1TS	POPTR_0001s14870	POPTR_0001s14870 (11)	scaffold_1:11679636-11680420(+) (11)	NA	Q9XHS0	40S ribosomal protein S12	AT2G32060.2	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os07g05580.1	"ribosomal protein L7Ae, putative, expressed"	Medtr5g012950.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110616.1.A1_at	A	A1TS	POPTR_0018s06280	POPTR_0018s06280 (11)	scaffold_18:6032860-6033630(+) (11)	NA	O75165	DnaJ homolog subfamily C member 13	AT2G26890.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g42439.1	"heat shock protein DnaJ, putative, expressed"	Medtr8g118640.1	"GRV2 ; binding, putative "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.11064.1.A1_a_at	A	A1MS	POPTR_0005s17440	POPTR_0005s17440 (11)	scaffold_5:14816186-14816466(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11064.2.A1_at	A	A1TS	POPTR_0014s11640	POPTR_0014s11640 (11)	scaffold_14:8633348-8634508(-) (11)	NA	NA	NA	AT1G47820.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g50350.1	expressed protein	Medtr3g073610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11067.1.S1_at	A	A1MS	POPTR_0008s20630	POPTR_0008s20630 (11)	scaffold_8:14393001-14393321(-) (11)	NA	A7S4N4	Probable serine incorporator	AT3G06170.1	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os03g34300.1	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.110681.1.A1_s_at	A	A1TS	POPTR_0017s06360	POPTR_0017s06360 (11)	scaffold_17:4879251-4879884(+) (11)	NA	A4IHW3	Probable UDP-sugar transporter protein SLC35A4	AT3G59360.2	UDP-galactose transporter 6 	LOC_Os02g39200.1	"nucleotide-sugar transporter family protein, putative, expressed"	Medtr1g146890.1	Nucleotide-sugar transporter 	GO:0008643|carbohydrate transport	GO:0005351|sugar:hydrogen symporter activity	GO:0016021|integral to membrane||GO:0000139|Golgi membrane
PtpAffx.1107.1.A1_s_at	A	A1TS	POPTR_0010s22480	POPTR_0010s22480 (11)	scaffold_10:19393505-19393607(+) (11)	NA	Q9FT52	"ATP synthase subunit d, mitochondrial"	AT3G52300.1	"ATP synthase D chain, mitochondrial "	LOC_Os08g37320.1	expressed protein	Medtr1g122040.1	"ATP synthase D chain, mitochondrial, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1107.2.S1_at	A	A1TS	POPTR_0008s04340	POPTR_0008s04340 (10)	scaffold_8:2426696-2426985(-) (10)	NA	Q9FT52	"ATP synthase subunit d, mitochondrial"	AT3G52300.1	"ATP synthase D chain, mitochondrial "	LOC_Os08g37320.1	expressed protein	Medtr1g122040.1	"ATP synthase D chain, mitochondrial, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110701.1.A1_at	A	A1TS	POPTR_0001s23510	POPTR_0001s23510 (11)	scaffold_1:22905290-22905556(-) (11)	NA	Q5RF97	Box C/D snoRNA protein 1	AT1G04945.2	HIT-type Zinc finger family protein 	LOC_Os01g73150.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110715.1.A1_s_at	A	A3TS	POPTR_0016s02220	POPTR_0016s02230 (11)//POPTR_0016s02260 (11)//POPTR_0016s02220 (11)	scaffold_16:1073497-1073830(+) (11)//scaffold_16:1080362-1080695(+) (11)//scaffold_16:1097424-1097757(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22380.1	UDP-glucosyl transferase 85A3 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11077.1.A1_at	A	A1TS	POPTR_0002s19630	POPTR_0002s19630 (11)	scaffold_2:15574137-15574511(-) (11)	NA	Q93WV5	Probable WRKY transcription factor 69	AT3G58710.2	WRKY DNA-binding protein 69 	LOC_Os02g47060.1	"OsWRKY66 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g133050.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.11077.4.A1_s_at	A	A1TS	POPTR_0014s11490	POPTR_0014s11490 (11)	scaffold_14:8527604-8528124(-) (11)	NA	Q93WV5	Probable WRKY transcription factor 69	AT3G58710.2	WRKY DNA-binding protein 69 	LOC_Os01g54600.1	"OsWRKY13 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g133050.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.1108.2.A1_a_at	A	A2TS	POPTR_0005s14080	POPTR_0005s14080 (11)//POPTR_0007s11620 (11)	scaffold_5:11136614-11136836(+) (11)//scaffold_7:11992534-11992747(-) (11)	NA	Q84TE9	Dof zinc finger protein DOF5.3	AT5G60200.1	TARGET OF MONOPTEROS 6 	LOC_Os03g55610.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr7g025880.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.1108.2.A1_at	A	A1TS	POPTR_0007s11620	POPTR_0007s11620 (10)	scaffold_7:11992309-11992858(-) (11)	NA	Q9LSL6	Dof zinc finger protein DOF5.7	AT5G65590.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os03g55610.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr7g025880.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.1108.3.A1_a_at	A	A1TS	POPTR_0005s14080	POPTR_0005s14080 (10)	scaffold_5:11136202-11136867(+) (10)	NA	Q84TE9	Dof zinc finger protein DOF5.3	AT5G60200.1	TARGET OF MONOPTEROS 6 	LOC_Os03g55610.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr7g025880.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.110813.1.A1_at	A	A1TS	POPTR_0016s10280	POPTR_0016s10280 (10)	scaffold_16:8487770-8488649(-) (10)	NA	NA	NA	AT2G37860.3	Protein of unknown function (DUF3411) 	LOC_Os04g44290.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110819.1.S1_at	A	A1MS	POPTR_0018s14750	POPTR_0018s14750 (11)	scaffold_18:14844247-14844512(+) (11)	NA	NA	NA	AT5G58100.1	unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g26984.1	expressed protein	Medtr5g019420.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110825.1.S1_at	A	A1TS	POPTR_0006s21030	POPTR_0006s21030 (10)	scaffold_6:20150094-20150323(-) (10)	NA	Q9M2F8	Carbon catabolite repressor protein 4 homolog 2	AT3G58580.1	DNAse I-like superfamily protein 	LOC_Os10g27230.3	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	AC235488_23.1	Endonuclease/exonuclease/phosphatase AC235488.1 111535-108488 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110831.1.S1_at	A	A1TS	POPTR_0016s08760	POPTR_0016s08760 (10)	scaffold_16:6550206-6550856(-) (10)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110867.1.S1_s_at	A	A1TS	POPTR_0016s09280	POPTR_0016s09280 (11)	scaffold_16:7262706-7262756(-) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.110886.1.S1_at	A	A1TS	POPTR_0006s02800	POPTR_0006s02800 (10)	scaffold_6:1769443-1771095(+) (10)	NA	Q9M1K3	Probable aquaporin SIP2-1	AT3G56950.2	small and basic intrinsic protein 2;1 	LOC_Os03g20410.1	"aquaporin SIP2-1, putative, expressed"	Medtr7g105100.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110895.1.S1_at	A	A1TS	POPTR_0010s13620	POPTR_0010s13620 (11)	scaffold_10:13436868-13437688(+) (11)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	LOC_Os06g15370.1	"peptide transporter PTR2, putative, expressed"	Medtr5g068370.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.11092.1.S1_at	A	A1TS	POPTR_0018s02820	POPTR_0018s02820 (11)	scaffold_18:2494915-2496195(+) (11)	NA	NA	NA	AT2G24860.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os09g25590.1	"tsi1-interacting protein TSIP1, putative, expressed"	Medtr3g138530.1	"Tsi1-interacting protein TSIP1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.110923.1.S1_at	A	A1TS	POPTR_0013s01870	POPTR_0013s01870 (10)	scaffold_13:1083153-1083707(+) (10)	NA	Q03685	Luminal-binding protein 5	AT5G28540.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11095.1.S1_at	A	A1TS	POPTR_0001s42170	POPTR_0001s42170 (10)	scaffold_1:41922373-41922644(+) (10)	NA	NA	NA	AT2G36740.1	sequence-specific DNA binding transcription factors;DNA binding;DNA binding 	LOC_Os08g09320.1	"YL1 nuclear protein C-terminal domain containing protein, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.110954.1.S1_a_at	A	A1TS	POPTR_0018s01680	POPTR_0018s01680 (11)	scaffold_18:1541277-1541508(-) (11)	NA	Q3E958	Ethylene-responsive transcription factor SHINE 3	AT5G25390.2	Integrase-type DNA-binding superfamily protein 	LOC_Os02g10760.1	"AP2 domain containing protein, expressed"	Medtr8g120410.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.110954.1.S1_at	A	A1TS	POPTR_0018s01680	POPTR_0018s01680 (11)	scaffold_18:1541238-1541424(-) (11)	NA	Q3E958	Ethylene-responsive transcription factor SHINE 3	AT5G25390.2	Integrase-type DNA-binding superfamily protein 	LOC_Os02g10760.1	"AP2 domain containing protein, expressed"	Medtr8g120410.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.110996.1.S1_s_at	A	A1TS	POPTR_0001s13510	POPTR_0001s13510 (11)	scaffold_1:10589523-10590606(-) (11)	NA	Q43793	"Glucose-6-phosphate 1-dehydrogenase, chloroplastic"	AT5G13110.1	glucose-6-phosphate dehydrogenase 2 	LOC_Os07g22350.1	"glucose-6-phosphate 1-dehydrogenase, chloroplast precursor, putative, expressed"	Medtr7g022440.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
PtpAffx.111008.1.S1_at	A	A1TS	POPTR_0009s10350	POPTR_0009s10350 (9)	scaffold_9:8905826-8906204(-) (9)	NA	NA	NA	AT2G15560.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os08g13390.2	expressed protein	Medtr4g130000.1	Protein of unknown function DUF537 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111030.1.S1_at	A	A1TS	POPTR_0019s09690	POPTR_0019s09690 (11)	scaffold_19:11303981-11304502(-) (11)	NA	O59729	Uncharacterized protein slp1	AT1G71360.1	Galactose-binding protein 	LOC_Os01g65520.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr4g032100.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111048.1.S1_at	A	A1TS	POPTR_0007s14380	POPTR_0007s14380 (11)	scaffold_7:14181336-14182450(+) (11)	NA	Q8VYN6	"6-phosphofructokinase 5, chloroplastic"	AT2G22480.1	phosphofructokinase 5 	LOC_Os09g24910.2	"phosphofructokinase, putative, expressed"	Medtr5g034000.1	Phosphofructokinase 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0003872|6-phosphofructokinase activity	GO:0005945|6-phosphofructokinase complex
PtpAffx.111056.1.S1_s_at	A	A1TS	POPTR_0010s16630	POPTR_0010s16630 (11)	scaffold_10:15527580-15528818(+) (11)	NA	O05235	Uncharacterized hydrolase yugF	AT1G13820.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g41080.1	"hydrolase, alpha/beta fold family domain containing protein"	Medtr5g047260.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111076.1.S1_at	A	A1TS	POPTR_0005s20190	POPTR_0005s20190 (9)	scaffold_5:19235038-19235399(+) (11)	NA	Q6MEG4	Ribosomal RNA small subunit methyltransferase H	AT5G10910.1	mraW methylase family protein 	LOC_Os02g04500.2	"S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed"	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.111108.1.S1_at	A	A1TS	POPTR_0011s11100	POPTR_0011s11100 (11)	scaffold_11:13767723-13768127(+) (11)	NA	P81898	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	AT3G14920.1	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein 	LOC_Os01g10930.1	"peptide-N4-asparagine amidase A, putative, expressed"	Medtr1g028750.1	"Peptide-N4-asparagine amidase A, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111110.2.S1_at	A	A1TS	POPTR_0002s13670	POPTR_0002s13670 (10)	scaffold_2:10143397-10143702(-) (10)	NA	NA	NA	AT3G60210.1	GroES-like family protein 	LOC_Os10g41710.1	"chaperonin, putative, expressed"	Medtr8g009080.1	GroES-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.111125.1.S1_at	A	A1TS	POPTR_0004s09020	POPTR_0004s09020 (10)	scaffold_4:7582299-7582348(+) (10)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11113.1.A1_at	A	A1MS	POPTR_0003s18300	POPTR_0003s18300 (10)	scaffold_3:17440402-17440648(+) (10)	NA	NA	NA	AT1G80940.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g55080.1	"snf1-related kinase interactor 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11117.1.A1_at	A	A1TS	POPTR_0006s29490	POPTR_0006s29490 (11)	scaffold_6:26837932-26840195(-) (11)	POPTR_0006s29540 (6)	Q9M086	DDB1- and CUL4-associated factor homolog 1	AT4G20325.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g40050.1	"ribonuclease H2 subunit B, putative, expressed"	Medtr3g133060.1	"Ribonuclease H2 subunit B, related "	NA	NA	GO:0005634|nucleus
PtpAffx.111195.1.S1_at	A	A1TS	POPTR_0005s26790	POPTR_0005s26790 (11)	scaffold_5:24670012-24670215(+) (11)	NA	Q9SYM1	Uncharacterized mscS family protein At1g78610	AT1G53470.1	mechanosensitive channel of small conductance-like 4 	LOC_Os02g44770.1	"uncharacterized mscS family protein, putative, expressed"	Medtr1g143150.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.1112.1.A1_s_at	A	A1TS	POPTR_0003s12230	POPTR_0003s12230 (11)	scaffold_3:12883180-12883966(+) (11)	NA	NA	NA	AT4G11740.1	Ubiquitin-like superfamily protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111235.1.S1_at	A	A1TS	POPTR_0009s14720	POPTR_0009s14720 (11)	scaffold_9:11468712-11470950(+) (11)	NA	Q93ZB9	Fatty acyl-CoA reductase 3	AT4G33790.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111246.1.S1_at	A	A1MS	POPTR_0001s35390	POPTR_0001s35390 (9)	scaffold_1:33736594-33736913(+) (9)	NA	P15792	Protein kinase PVPK-1	AT3G27580.2	Protein kinase superfamily protein 	LOC_Os09g08420.1	"AGC_PVPK_like_kin82y.15 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.111296.1.S1_s_at	A	A1TS	POPTR_0005s12770	POPTR_0005s12770 (11)	scaffold_5:9584692-9586013(+) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.111323.1.S1_s_at	A	A1TS	POPTR_0006s20340	POPTR_0006s20340 (11)	scaffold_6:19397161-19398540(-) (11)	NA	Q10710	Sugar carrier protein A	AT4G02050.1	sugar transporter protein 7 	LOC_Os09g24924.1	"transporter family protein, putative, expressed"	Medtr8g122780.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.111335.1.S1_s_at	A	A1TS	POPTR_0001s24240	POPTR_0001s24240 (11)	scaffold_1:23587922-23588521(+) (11)	NA	NA	NA	AT5G59790.1	Domain of unknown function (DUF966) 	LOC_Os01g62200.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g078980.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111422.1.S1_s_at	A	A1TS	POPTR_0004s18390	POPTR_0004s18390 (11)	scaffold_4:18297887-18299109(+) (11)	NA	P80093	"Phytoene dehydrogenase, chloroplastic/chromoplastic"	AT4G14210.1	phytoene desaturase 3 	LOC_Os04g47290.2	"amine oxidase, putative, expressed"	Medtr1g096350.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.111453.1.S1_at	A	A1TS	POPTR_0009s05950	POPTR_0009s05950 (11)	scaffold_9:5903734-5904236(-) (11)	NA	Q9SPL4	Vicilin-like antimicrobial peptides 2-2	AT2G28490.1	RmlC-like cupins superfamily protein 	LOC_Os03g21790.1	"cupin domain containing protein, expressed"	Medtr2g111050.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.111467.1.S1_at	A	A1MS	POPTR_0011s06740	POPTR_0011s06740 (9)	scaffold_11:7400049-7400564(-) (9)	NA	Q9FXF2	Probable LRR receptor-like serine/threonine-protein kinase RFK1	AT1G29750.2	receptor-like kinase in flowers 1 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.111473.1.S1_at	A	A1TS	POPTR_0010s18610	POPTR_0010s18610 (10)	scaffold_10:16814353-16818152(-) (10)	NA	O43120	Splicing factor U2AF-associated protein 2	AT5G16260.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g41910.1	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.111490.2.S1_a_at	A	A1TS	POPTR_0014s07530	POPTR_0014s07530 (11)	scaffold_14:5660007-5660442(-) (11)	NA	Q6DW73	"Digalactosyldiacylglycerol synthase 2, chloroplastic"	AT4G00550.1	digalactosyl diacylglycerol deficient 2 	LOC_Os03g11560.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr6g093420.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.111508.1.S1_at	A	A1TS	POPTR_0006s25850	POPTR_0006s25850 (11)	scaffold_6:24198867-24200340(-) (11)	NA	P33399	La protein homolog	AT4G32720.2	La protein 1 	LOC_Os02g39700.1	"RNA binding protein, putative, expressed"	Medtr2g024800.1	RNA-binding region RNP-1 (RNA recognition motif); Winged helix repressor DNA-binding 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.111515.1.S1_at	A	A1TS	POPTR_0010s10340	POPTR_0010s10340 (11)	scaffold_10:10889289-10889653(-) (11)	NA	Q8LC03	Homeobox-leucine zipper protein ATHB-13	AT1G69780.1	Homeobox-leucine zipper protein family 	LOC_Os03g07450.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g040020.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.111525.1.S1_at	A	A1TS	POPTR_0002s06170	POPTR_0002s06170 (9)	scaffold_2:4135650-4135954(+) (9)	NA	Q7Y1V5	Cytochrome P450 78A11	AT5G09970.1	"cytochrome P450, family 78, subfamily A, polypeptide 7 "	LOC_Os10g26340.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.111536.1.S1_at	A	A1TS	POPTR_0018s10440	POPTR_0018s10440 (11)	scaffold_18:11368491-11368904(+) (11)	NA	P53118	Putative lipase ROG1	AT4G25770.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os08g34750.1	"serine esterase family protein, putative, expressed"	Medtr8g128330.2	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11154.1.S1_s_at	A	A1TS	POPTR_0008s11990	POPTR_0008s11990 (11)	scaffold_8:7730298-7730753(-) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11154.2.S1_at	A	A1TS	POPTR_0010s13420	POPTR_0010s13420 (11)	scaffold_10:13272065-13272444(+) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11154.3.S1_a_at	A	A1TS	POPTR_0010s13420	POPTR_0010s13420 (11)	scaffold_10:13271864-13272194(+) (11)	NA	NA	NA	AT1G68490.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13390.2); Has 125 Blast hits to 125 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111557.1.S1_at	A	A1MS	POPTR_0009s16370	POPTR_0009s16370 (9)	scaffold_9:12460694-12461348(-) (10)	NA	NA	NA	AT5G22210.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111558.1.S1_s_at	A	A1TS	POPTR_0001s09760	POPTR_0001s09760 (11)	scaffold_1:7501115-7502179(+) (11)	NA	NA	NA	AT1G28140.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2301, transmembrane (InterPro:IPR019275); Has 140 Blast hits to 140 proteins in 72 species: Archae - 0; Bacteria - 86; Metazoa - 10; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). "	LOC_Os03g63360.1	"glutathione S-transferase, putative, expressed"	Medtr1g126130.1	"Multicopper oxidase, type 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111567.1.S1_at	A	A1TS	POPTR_0011s12530	POPTR_0011s12530 (9)	scaffold_11:15274530-15274731(-) (9)	NA	Q38945	PAP-specific phosphatase HAL2-like	AT5G54390.1	HAL2-like 	LOC_Os02g56170.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.111579.1.S1_at	A	A1TS	POPTR_0004s17160	POPTR_0004s17160 (10)	scaffold_4:17494721-17496986(-) (10)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.2	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr4g097630.1	YEATS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.111584.1.S1_at	A	A1MS	POPTR_0002s23780	POPTR_0002s23780 (9)	scaffold_2:21276960-21277386(-) (9)	NA	NA	NA	AT3G26780.1	Phosphoglycerate mutase family protein 	LOC_Os11g31880.1	"phosphoglycerate mutase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11164.1.A1_a_at	A	A1TS	POPTR_0009s12870	POPTR_0009s12870 (11)	scaffold_9:10417152-10418224(+) (11)	NA	NA	NA	AT5G15320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g097560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11164.2.A1_at	A	A1MS	POPTR_0009s12870	POPTR_0009s12870 (11)	scaffold_9:10418028-10418224(+) (11)	NA	NA	NA	AT5G15320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g097560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11164.3.A1_at	A	A1MS	POPTR_0009s12870	POPTR_0009s12870 (11)	scaffold_9:10417211-10417332(+) (11)	NA	NA	NA	AT5G15320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g097560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11165.1.S1_s_at	A	A1TS	POPTR_0012s10770	POPTR_0012s10770 (9)	scaffold_12:11455727-11455964(-) (9)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
PtpAffx.111653.1.S1_s_at	A	A1TS	POPTR_0018s12020	POPTR_0018s12020 (11)	scaffold_18:12641722-12641821(-) (11)	NA	Q92564	DCN1-like protein 4	AT1G15860.2	Domain of unknown function (DUF298) 	LOC_Os08g34070.1	"DCN1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111655.1.S1_at	A	A1TS	POPTR_0010s17950	POPTR_0010s17950 (10)	scaffold_10:16373418-16373532(+) (10)	NA	Q0WU02	Metal tolerance protein 10	AT1G16310.1	Cation efflux family protein 	LOC_Os01g03914.2	"cation efflux family protein, putative, expressed"	Medtr3g110280.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.111671.1.S1_at	A	A1TS	POPTR_0014s03510	POPTR_0014s03510 (10)	scaffold_14:2816452-2818026(-) (10)	NA	Q8GZD4	Nucleobase-ascorbate transporter 3	AT2G26510.1	Xanthine/uracil permease family protein 	LOC_Os12g39420.9	"nucleobase-ascorbate transporter, putative, expressed"	Medtr1g025100.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.111678.1.S1_at	A	A1TS	POPTR_0010s03970	POPTR_0010s03970 (9)	scaffold_10:4767621-4769892(-) (9)	NA	Q4P9K6	Protein SYM1	AT2G42770.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os01g53060.1	"peroxisomal membrane protein, putative, expressed"	Medtr4g108520.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.111679.1.S1_at	A	A1TS	POPTR_0001s20370	POPTR_0001s20370 (9)	scaffold_1:18256884-18257346(-) (9)	NA	Q8LPH6	Transcription factor MYB86	AT3G13890.2	myb domain protein 26 	LOC_Os01g51260.1	"MYB family transcription factor, putative, expressed"	Medtr2g120890.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111691.1.S1_at	A	A1TS	POPTR_0012s08570	POPTR_0012s08570 (11)	scaffold_12:9663130-9664187(-) (11)	NA	Q9FML2	Histone deacetylase 6	AT5G63110.1	histone deacetylase 6 	LOC_Os08g25570.1	"histone deacetylase, putative, expressed"	Medtr3g114600.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111712.1.S1_at	A	A1TS	POPTR_0008s14860	POPTR_0008s14860 (9)	scaffold_8:9874052-9875432(-) (9)	NA	Q4TU14	E3 ubiquitin-protein ligase RHF1A	AT4G14220.1	RING-H2 group F1A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111716.1.S1_at	A	A1TS	POPTR_0006s07650	POPTR_0006s07650 (9)	scaffold_6:5577460-5577723(-) (9)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.111718.1.S1_at	A	A1TS	POPTR_0006s13630	POPTR_0006s13630 (10)	scaffold_6:10830622-10832313(+) (10)	NA	NA	NA	AT5G02770.1	unknown protein; Has 469 Blast hits to 336 proteins in 126 species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi - 22; Plants - 47; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). 	LOC_Os03g17490.2	expressed protein	AC235022_12.1	hypothetical protein AC235022.1 78747-76265 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111722.1.S1_at	A	A1TS	POPTR_0007s14230	POPTR_0007s14230 (11)	scaffold_7:14070904-14071476(-) (11)	NA	Q6SZ87	Nucleobase-ascorbate transporter 11	AT4G38050.1	Xanthine/uracil permease family protein 	LOC_Os07g30810.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr5g033390.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.111752.1.S1_at	A	A1MS	POPTR_0010s13010	POPTR_0010s13010 (9)	scaffold_10:12924937-12925051(+) (9)	NA	NA	NA	AT2G01220.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g49670.1	"cytidylyltransferase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111781.1.S1_at	A	A1TS	POPTR_0002s09960	POPTR_0002s09960 (11)	scaffold_2:7150182-7151047(+) (11)	NA	Q9M9E8	F-box protein At1g78280	AT1G78280.1	"transferases, transferring glycosyl groups "	LOC_Os03g27250.1	"OsFBO14 - F-box and other domain containing protein, expressed"	Medtr3g150440.1	"Transcription factor jumonji, jmjC; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111782.1.S1_at	A	A1TS	POPTR_0002s17860	POPTR_0002s17860 (10)	scaffold_2:13681778-13681989(+) (10)	NA	Q9MAM3	3-ketoacyl-CoA synthase 1	AT1G01120.1	3-ketoacyl-CoA synthase 1 	LOC_Os03g14170.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr7g146040.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.111828.1.S1_s_at	A	A1TS	POPTR_0012s14920	POPTR_0012s14920 (11)	scaffold_12:14626824-14627231(+) (11)	NA	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.111833.1.S1_s_at	A	A1TS	POPTR_0015s01320	POPTR_0015s01320 (11)	scaffold_15:821770-822961(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT5G53080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr3g123620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111842.1.A1_s_at	A	A2TS	POPTR_0010s14860	POPTR_0010s14860 (11)//POPTR_0006s13760 (10)	scaffold_10:14330686-14334430(+) (11)//scaffold_6:10981698-10985573(-) (9)	NA	Q6CBH3	"Probable hexaprenyl pyrophosphate synthase, mitochondrial"	AT2G34630.2	geranyl diphosphate synthase 1 	LOC_Os06g46450.1	"polyprenyl synthetase, putative, expressed"	Medtr5g019360.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.11185.1.A1_s_at	A	A1TS	POPTR_0002s11320	POPTR_0002s11320 (11)	scaffold_2:8371925-8372285(+) (11)	NA	NA	NA	AT1G10020.1	Protein of unknown function (DUF1005) 	LOC_Os07g04150.1	"stress-induced protein, putative, expressed"	Medtr5g005600.1	Protein of unknown function DUF1005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111856.1.S1_at	A	A1TS	POPTR_0010s06330	POPTR_0010s06330 (11)	scaffold_10:7727697-7728234(+) (11)	NA	O64511	Protein TWIN LOV 1	AT2G02710.2	PAS/LOV protein B 	LOC_Os01g09120.1	"Twin LOV 1, putative, expressed"	Medtr5g039450.1	PAS 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	NA
PtpAffx.111861.1.S1_s_at	A	A1TS	POPTR_0005s10270	POPTR_0005s10270 (11)	scaffold_5:7354268-7355355(+) (11)	NA	Q8W2B8	Serine acetyltransferase 4	AT4G35640.1	serine acetyltransferase 3;2 	LOC_Os03g04140.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g023630.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
PtpAffx.111863.1.S1_at	A	A1TS	POPTR_0002s11860	POPTR_0002s11860 (10)	scaffold_2:8798314-8799725(-) (10)	NA	Q5XIF3	"NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial"	AT5G67590.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os07g39710.1	"NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed"	Medtr8g101670.1	ETC complex I subunit conserved region 	GO:0022900|electron transport chain	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH"""	GO:0005743|mitochondrial inner membrane
PtpAffx.111866.1.S1_at	A	A1TS	POPTR_0013s09320	POPTR_0013s09320 (9)	scaffold_1298:5166-5259(-) (11)//scaffold_13:8983693-8983777(-) (9)	NA	NA	NA	AT3G54190.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g40410.1	expressed protein	Medtr5g077290.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111871.1.S1_a_at	A	A2TS	POPTR_0006s05960	POPTR_0006s05960 (11)//POPTR_0018s12390 (11)	scaffold_18:12880482-12880776(+) (11)//scaffold_6:4215334-4216110(+) (11)	NA	NA	NA	AT2G12400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os02g55590.3	expressed protein	Medtr8g122370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111871.1.S1_at	A	A1TS	POPTR_0006s05960	POPTR_0006s05960 (10)	scaffold_6:4215323-4216457(+) (10)	NA	NA	NA	AT2G12400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os02g55590.3	expressed protein	Medtr8g122370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111871.2.S1_at	A	A1TS	POPTR_0018s12390	POPTR_0018s12390 (11)	scaffold_18:12880122-12880964(+) (11)	NA	NA	NA	AT2G12400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G25270.1); Has 177 Blast hits to 172 proteins in 23 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111878.1.A1_at	A	A1TS	POPTR_0010s10910	POPTR_0010s10910 (11)	scaffold_10:11285014-11285518(-) (11)	NA	Q5REY7	UBX domain-containing protein 7	AT1G14570.1	UBX domain-containing protein 	LOC_Os04g57520.1	"UBX domain-containing protein, putative, expressed"	AC229689_1.1	UBX; UAS; Thioredoxin-like fold AC229689.5 4995-12311 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111899.1.S1_at	A	A1TS	POPTR_0016s04960	POPTR_0016s04960 (11)	scaffold_16:2997405-2997928(+) (11)	NA	Q6DN12	Multiple C2 and transmembrane domain-containing protein 2	AT3G57880.1	Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein 	LOC_Os05g30750.7	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr7g111440.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111902.1.S1_at	A	A1TS	POPTR_0001s25020	POPTR_0001s25020 (11)	scaffold_1:24287473-24287885(+) (11)	NA	Q9ZW06	Pumilio homolog 2	AT2G29190.2	pumilio 2 	LOC_Os01g62650.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr4g084270.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.111903.1.S1_at	A	A1TS	POPTR_0017s06170	POPTR_0017s06170 (11)	scaffold_17:4787888-4788610(+) (11)	NA	P41252	"Isoleucyl-tRNA synthetase, cytoplasmic"	AT4G10320.1	"tRNA synthetase class I (I, L, M and V) family protein "	LOC_Os06g43760.1	"tRNA synthetase class I, putative, expressed"	Medtr4g104390.1	"Aminoacyl-tRNA synthetase, class Ia; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.111903.2.S1_at	A	A1TS	POPTR_0005s22660	POPTR_0005s22660 (10)	scaffold_5:21573919-21574348(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.111913.1.A1_at	A	A1TS	POPTR_0008s21121	POPTR_0008s21121 (10)	scaffold_8:15284483-15285024(+) (11)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os06g42640.3	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.111967.1.S1_at	A	A1TS	POPTR_0013s02680	POPTR_0013s02680 (11)	scaffold_13:1618969-1619594(+) (11)	NA	Q9C7T4	Transcription factor bHLH96	AT1G72210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g08930.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr1g099080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.111967.2.A1_s_at	A	A1TS	POPTR_0005s04160	POPTR_0005s04160 (11)	scaffold_5:2765883-2766243(-) (11)	NA	Q9C7T4	Transcription factor bHLH96	AT1G72210.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g08930.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr1g099080.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.11198.1.A1_at	A	A1TS	POPTR_0009s16020	POPTR_0009s16020 (10)	scaffold_9:12267320-12267597(-) (10)	NA	Q9ZVD0	Serrate RNA effector molecule	AT2G27100.1	C2H2 zinc-finger protein SERRATE (SE) 	LOC_Os06g48530.1	"ZOS6-09 - C2H2 zinc finger protein, expressed"	Medtr8g047770.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1120.1.S1_at	A	A1TS	POPTR_0004s18000	POPTR_0004s18000 (11)	scaffold_4:18020245-18020404(+) (11)	NA	O24030	Proteasome subunit alpha type-7	AT5G66140.1	proteasome alpha subunit D2 	LOC_Os08g43540.1	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
PtpAffx.11200.1.A1_at	A	A1TS	POPTR_0002s07700	POPTR_0002s07700 (11)	scaffold_2:5281053-5281484(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112006.1.S1_at	A	A1TS	POPTR_0001s25530	POPTR_0001s25530 (11)	scaffold_1:24612320-24612472(-) (11)	NA	Q66GI9	"Probable anion transporter 4, chloroplastic"	AT3G46980.3	phosphate transporter 4;3 	LOC_Os01g63290.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112006.1.S1_s_at	A	A1TS	POPTR_0001s25530	POPTR_0001s25530 (11)	scaffold_1:24612110-24612313(-) (11)	NA	Q66GI9	"Probable anion transporter 4, chloroplastic"	AT3G46980.3	phosphate transporter 4;3 	LOC_Os01g63290.1	"transporter, major facilitator family, putative, expressed"	Medtr5g078180.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112024.1.S1_at	A	A1MS	POPTR_0013s02940	POPTR_0013s02940 (10)	scaffold_13:1780694-1781668(+) (10)	NA	Q8CCN5	Breast carcinoma-amplified sequence 3 homolog	AT1G54710.1	homolog of yeast autophagy 18 (ATG18) H 	LOC_Os05g33610.2	expressed protein	Medtr1g098850.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11205.1.A1_s_at	A	A1TS	POPTR_0004s00720	POPTR_0004s00720 (11)	scaffold_4:306802-307003(+) (11)	NA	P12617	"Malonyl-CoA decarboxylase, mitochondrial"	AT4G04320.1	malonyl-CoA decarboxylase family protein 	LOC_Os09g23070.1	"malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0050080|malonyl-CoA decarboxylase activity	NA
PtpAffx.112078.1.A1_at	A	A1TA	POPTR_0018s11860	POPTR_0018s11860 (11)	scaffold_18:12523752-12524142(-) (11)	NA	NA	NA	AT5G58040.1	homolog of yeast FIP1 [V] 	LOC_Os03g51520.2	"fip1 motif family protein, expressed"	Medtr8g137570.1	Fip1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11208.1.A1_at	A	A1TS	POPTR_0018s03450	POPTR_0018s03450 (11)	scaffold_18:3033269-3034924(+) (11)	NA	Q9SV15	Probable WRKY transcription factor 11	AT4G31550.2	WRKY DNA-binding protein 11 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g010400.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.112109.1.S1_at	A	A1TS	POPTR_0012s11820	POPTR_0012s11820 (10)	scaffold_12:12197391-12198441(-) (10)	NA	NA	NA	AT2G35640.1	Homeodomain-like superfamily protein 	LOC_Os04g57530.1	"transcription factor, putative, expressed"	Medtr7g020740.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112163.1.S1_at	A	A1TS	POPTR_0013s12160	POPTR_0013s12160 (11)	scaffold_13:12804467-12805136(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112170.1.S1_at	A	A1TS	POPTR_0001s38950	POPTR_0001s38950 (9)	scaffold_1:38197004-38197464(-) (9)	NA	P72580	Prenyl transferase	AT1G78510.1	solanesyl diphosphate synthase 1 	LOC_Os05g50550.1	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.112172.1.S1_at	A	A1TS	POPTR_0002s15890	POPTR_0002s15890 (11)	scaffold_2:11840928-11841833(+) (11)	NA	Q8RXK6	DEAD-box ATP-dependent RNA helicase 8	AT4G00660.1	RNAhelicase-like 8 	LOC_Os04g45040.3	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g084670.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.112172.1.S1_s_at	A	A2TS	POPTR_0002s15890	POPTR_0014s07690 (11)//POPTR_0002s15890 (11)	scaffold_14:5759503-5761098(+) (11)//scaffold_2:11841698-11842454(+) (11)	NA	Q8RXK6	DEAD-box ATP-dependent RNA helicase 8	AT4G00660.1	RNAhelicase-like 8 	LOC_Os04g45040.3	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr7g084670.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.1122.1.S1_a_at	A	A1TS	POPTR_0004s04550	POPTR_0004s04550 (11)	scaffold_4:3292619-3292931(-) (11)	POPTR_0011s05370 (7)	P93014	"30S ribosomal protein S5, chloroplastic"	AT2G33800.1	Ribosomal protein S5 family protein 	LOC_Os03g34040.1	"ribosomal protein, putative, expressed"	Medtr4g142760.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.1122.3.S1_a_at	A	A1TS	POPTR_0009s06540	POPTR_0009s06540 (11)	scaffold_9:6295569-6295941(-) (11)	NA	Q9LXV5	Nuclear transcription factor Y subunit A-1	AT5G12840.4	"nuclear factor Y, subunit A1 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.1122.4.S1_at	A	A1TS	POPTR_0009s06540	POPTR_0009s06540 (11)	scaffold_9:6295765-6296059(-) (11)	NA	Q9LXV5	Nuclear transcription factor Y subunit A-1	AT5G12840.4	"nuclear factor Y, subunit A1 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11220.1.S1_s_at	A	A1TS	POPTR_0014s03580	POPTR_0014s03580 (11)	scaffold_14:2864833-2865053(+) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os12g30040.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr2g014200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112201.1.S1_at	A	A1TS	POPTR_0005s05130	POPTR_0005s05130 (11)	scaffold_5:3409124-3409533(+) (11)	NA	NA	NA	AT1G54520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1517 (InterPro:IPR010903); Has 276 Blast hits to 275 proteins in 83 species: Archae - 0; Bacteria - 108; Metazoa - 6; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). 	LOC_Os03g48920.1	"DUF1517 domain containing protein, putative, expressed"	Medtr7g140520.1	Protein of unknown function DUF1517 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112226.1.S1_at	A	A1TS	POPTR_0003s12490	POPTR_0003s12490 (11)	scaffold_3:13045112-13045726(-) (11)	POPTR_0001s09130 (6)	C0LGH8	Probable LRR receptor-like serine/threonine-protein kinase At1g63430	AT1G63430.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g58700.1	expressed protein	Medtr5g010570.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112232.1.S1_at	A	A1TS	POPTR_0018s02000	POPTR_0018s02000 (11)	scaffold_18:1804104-1804246(+) (11)	NA	Q03730	Uncharacterized vacuolar membrane protein YML018C	AT4G32140.1	EamA-like transporter family 	LOC_Os04g55260.1	"thiamine-repressible mitochondrial transport protein THI74, putative, expressed"	Medtr7g064590.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112241.1.S1_at	A	A1MS	POPTR_0018s08920	POPTR_0018s08920 (9)	scaffold_18:9830380-9831116(-) (9)	NA	Q5JMF2	Probable protein ABIL5	AT3G49290.2	ABL interactor-like protein 2 	LOC_Os01g55560.1	"ABIL3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112242.1.S1_s_at	A	A1TS	POPTR_0006s09160	POPTR_0006s09160 (11)	scaffold_6:6767057-6768647(+) (11)	NA	Q0PGJ6	Aldo-keto reductase family 4 member C9	AT2G37770.2	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os01g62870.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g018950.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.112256.1.S1_at	A	A1TS	POPTR_0018s05850	POPTR_0018s05850 (11)	scaffold_18:5474029-5475759(-) (11)	NA	P31583	Ras-related protein RHN1	AT5G45130.1	RAB homolog 1 	LOC_Os06g47260.2	"ras-related protein, putative, expressed"	Medtr4g158780.1	"Ras small GTPase, Rab type; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11226.1.S1_at	A	A1TS	POPTR_0015s05300	POPTR_0015s05300 (9)	scaffold_15:5666885-5668142(+) (9)	NA	Q9C9X3	Annexin D5	AT1G68090.1	annexin 5 	LOC_Os09g23160.1	"annexin, putative, expressed"	Medtr4g154520.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.11228.1.S1_a_at	A	A1TS	POPTR_0006s20190	POPTR_0006s20190 (11)	scaffold_6:19246320-19246443(+) (11)	NA	Q9ZRD6	VAMP-like protein YKT61	AT5G58060.1	SNARE-like superfamily protein 	LOC_Os01g73300.1	"VAMP-like protein YKT62, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.11228.2.S1_at	A	A1TS	POPTR_0006s20190	POPTR_0006s20190 (11)	scaffold_6:19246436-19246785(+) (11)	NA	Q9ZRD6	VAMP-like protein YKT61	AT5G58060.1	SNARE-like superfamily protein 	LOC_Os01g73300.1	"VAMP-like protein YKT62, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.112286.1.A1_at	A	A2TA	POPTR_0016s03150	POPTR_0016s03150 (11)//POPTR_0016s03160 (9)	scaffold_16:1597547-1597888(-) (11)//scaffold_16:1606312-1606585(-) (9)	NA	O81117	Cytochrome P450 94A1	AT3G56630.1	"cytochrome P450, family 94, subfamily D, polypeptide 2 "	LOC_Os01g58960.1	"cytochrome P450, putative, expressed"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.112286.1.S1_at	A	A1TS	POPTR_0016s03150	POPTR_0016s03150 (9)	scaffold_16:1597480-1597887(+) (9)	POPTR_0016s03160 (8)	O81117	Cytochrome P450 94A1	AT3G56630.1	"cytochrome P450, family 94, subfamily D, polypeptide 2 "	LOC_Os01g58960.1	"cytochrome P450, putative, expressed"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.112287.1.S1_at	A	A1TS	POPTR_0006s17960	POPTR_0006s17960 (11)	scaffold_6:16250679-16251481(-) (11)	NA	Q03194	Plasma membrane ATPase 4	AT4G30190.1	H(+)-ATPase 2 	LOC_Os04g56160.3	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.112304.1.A1_at	A	A1TS	POPTR_0012s01640	POPTR_0012s01640 (11)	scaffold_12:1250667-1251502(+) (11)	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11231.1.S1_at	A	A1TS	POPTR_0018s13200	POPTR_0018s13200 (11)	scaffold_18:13611839-13613392(-) (11)	NA	Q10E50	Phospholipase A2 homolog 3	AT2G06925.1	Phospholipase A2 family protein 	LOC_Os03g50030.1	"phospholipase A2, putative, expressed"	Medtr6g092420.1	Phospholipase A2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112322.1.S1_at	A	A1MS	POPTR_0002s20690	POPTR_0002s20690 (10)	scaffold_2:16763687-16764126(+) (10)	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112322.3.S1_a_at	A	A1TS	POPTR_0002s20690	POPTR_0002s20690 (11)	scaffold_2:16765083-16765202(+) (11)	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112323.1.S1_at	A	A1TS	POPTR_0010s23910	POPTR_0010s23910 (11)	scaffold_10:20360418-20361738(+) (11)	NA	Q4V3C8	3-phosphoinositide-dependent protein kinase 2	AT3G10540.1	3-phosphoinositide-dependent protein kinase 	LOC_Os01g65230.1	"AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g139660.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11233.1.S1_a_at	A	A1TS	POPTR_0012s03590	POPTR_0012s03590 (11)	scaffold_12:2825317-2826130(+) (11)	NA	Q3ZBN8	Mitochondrial import inner membrane translocase subunit TIM14	AT2G35795.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g09450.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.112344.1.S1_at	A	A1TS	POPTR_0009s13860	POPTR_0009s13860 (10)	scaffold_9:10957532-10957989(-) (10)	NA	Q9ZVX2	Transcription factor ABORTED MICROSPORES	AT2G16910.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02820.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g096910.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.112345.1.S1_at	A	A1TS	POPTR_0002s06010	POPTR_0002s06010 (11)	scaffold_2:4007211-4007424(-) (11)	NA	Q9SVV6	Probable calcium-activated outward-rectifying potassium channel 6	AT4G18160.1	Ca2+ activated outward rectifying K+ channel 6 	LOC_Os09g12790.1	"potassium channel protein, putative, expressed"	Medtr7g134030.1	Ion transport 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112347.1.S1_at	A	A1TS	POPTR_0015s07290	POPTR_0015s07290 (10)	scaffold_15:8436006-8436332(-) (10)//scaffold_1558:4556-4883(+) (11)	NA	Q9LF80	Putative glycosyltransferase 3	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g32750.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
PtpAffx.112350.1.S1_at	A	A1TS	POPTR_0012s07180	POPTR_0012s07180 (11)	scaffold_12:7958465-7958830(+) (11)	NA	Q9ZPC0	"Isochorismate synthase, chloroplastic"	AT1G18870.1	isochorismate synthase 2 	LOC_Os09g19734.1	"isochorismate synthase 1, chloroplast precursor, putative, expressed"	Medtr4g104110.1	Anthranilate synthase component I and chorismate binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112351.1.S1_at	A	A1MS	POPTR_0012s05870	POPTR_0012s05870 (11)	scaffold_12:5721449-5721791(-) (11)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT5G61030.1	glycine-rich RNA-binding protein 3 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g036670.1	"Carbohydrate kinase, PfkB; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.112380.1.S1_s_at	A	A2TS	POPTR_0002s09410	POPTR_0002s09410 (11)//POPTR_0005s16630 (11)	scaffold_2:6704090-6704490(-) (11)//scaffold_5:13614212-13614612(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112384.1.S1_s_at	A	A1TS	POPTR_0018s10300	POPTR_0018s10300 (11)	scaffold_18:11240542-11240762(-) (11)	NA	Q38857	Xyloglucan endotransglucosylase/hydrolase protein 22	AT5G57560.1	Xyloglucan endotransglucosylase/hydrolase family protein 	LOC_Os06g48180.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.11239.1.S1_s_at	A	A1TS	POPTR_0009s10270	POPTR_0009s10270 (11)	scaffold_9:8858424-8859010(-) (11)	NA	O65862	Caffeoyl-CoA O-methyltransferase 1	AT4G34050.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.112392.1.S1_at	A	A1TS	POPTR_0003s20440	POPTR_0003s20440 (10)	scaffold_3:18937239-18937604(-) (10)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.112394.1.S1_at	A	A1TS	POPTR_0016s14610	POPTR_0016s14610 (10)	scaffold_16:13781460-13782160(-) (10)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g60330.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g083650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.112412.1.S1_at	A	A1TS	POPTR_0010s15000	POPTR_0010s15000 (11)	scaffold_10:14409372-14409993(-) (11)	NA	P78316	Nucleolar protein 14	AT1G69070.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). 	LOC_Os03g40110.1	"nop14-like family protein, expressed"	Medtr1g043170.1	Nop14-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112415.1.S1_at	A	A1TS	POPTR_0008s03960	POPTR_0008s03960 (9)	scaffold_8:2184247-2184749(-) (9)	NA	NA	NA	AT1G13810.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os08g13890.1	"exonuclease, putative, expressed"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112420.1.S1_at	A	A1TS	POPTR_0009s01470	POPTR_0009s01470 (11)	scaffold_9:1808359-1809794(-) (11)	NA	P08926	"RuBisCO large subunit-binding protein subunit alpha, chloroplastic"	AT2G28000.1	chaperonin-60alpha 	LOC_Os12g17910.1	"T-complex protein, putative, expressed"	AC233663_8.1	Chaperonin Cpn60 AC233663.2 79149-81923 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.112424.1.S1_s_at	A	A1TS	POPTR_0001s24940	POPTR_0001s24940 (11)	scaffold_1:24203921-24204392(-) (11)	NA	O81077	Abscisic acid 8'-hydroxylase 2	AT2G29090.2	"cytochrome P450, family 707, subfamily A, polypeptide 2 "	LOC_Os02g47470.1	"cytochrome P450, putative, expressed"	Medtr5g025670.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.11243.1.S1_at	A	A1TS	POPTR_0007s12430	POPTR_0007s12430 (9)	scaffold_7:12731022-12732658(-) (10)	NA	Q6P1B1	Xaa-Pro aminopeptidase 1	AT4G36760.1	aminopeptidase P1 	LOC_Os06g45360.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g019520.1	Creatinase; Peptidase M24 	GO:0009987|cellular process	GO:0016787|hydrolase activity	NA
PtpAffx.112432.1.S1_at	A	A1TS	POPTR_0011s13990	POPTR_0011s13990 (10)	scaffold_11:16592490-16593078(+) (10)	POPTR_0001s44710 (6)	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT4G27060.1	ARM repeat superfamily protein 	LOC_Os07g33630.1	"HEAT repeat family protein, putative, expressed"	Medtr3g067150.1	HEAT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112471.1.S1_at	A	A1MA	POPTR_0001s05550	POPTR_0001s05550 (9)	scaffold_1:4261824-4262532(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112472.1.S1_s_at	A	A1TS	POPTR_0002s16990	POPTR_0002s16990 (11)	scaffold_2:12752940-12753235(-) (11)	NA	NA	NA	AT3G58800.1	unknown protein; Has 75 Blast hits to 75 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 17; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g54440.1	expressed protein	Medtr5g099080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11250.1.S1_at	A	A1TS	POPTR_0002s15700	POPTR_0002s15700 (11)	scaffold_2:11724205-11725204(+) (11)	NA	Q9C8S6	C2 domain-containing protein At1g63220	AT1G63220.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os04g44870.1	"C2 domain containing protein, putative, expressed"	Medtr8g034330.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112519.1.S1_s_at	A	A1TS	POPTR_0019s13050	POPTR_0019s13050 (11)	scaffold_19:14060816-14060938(+) (11)	NA	NA	NA	AT5G10460.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g42950.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr4g128280.1	Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.112537.1.S1_at	A	A1TS	POPTR_0014s15990	POPTR_0014s15990 (9)	scaffold_14:12071769-12072350(+) (9)	NA	A7SLC8	N-acetyltransferase 9-like protein	AT2G04845.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g09860.2	"acetyltransferase, GNAT family, putative, expressed"	Medtr3g106050.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.112555.1.S1_at	A	A1TS	POPTR_0008s12500	POPTR_0008s12500 (9)	scaffold_8:8093756-8095804(+) (9)	NA	Q9BVG9	Phosphatidylserine synthase 2	AT1G15110.1	phosphatidyl serine synthase family protein 	LOC_Os01g02890.1	"phosphatidylserine synthase, putative"	NA	NA	GO:0006659|phosphatidylserine biosynthetic process	NA	NA
PtpAffx.112555.2.S1_s_at	A	A1TS	POPTR_0010s12770	POPTR_0010s12770 (11)	scaffold_10:12724035-12727912(-) (11)	POPTR_0008s12500 (6)	Q9BVG9	Phosphatidylserine synthase 2	AT1G15110.1	phosphatidyl serine synthase family protein 	LOC_Os01g02890.1	"phosphatidylserine synthase, putative"	NA	NA	GO:0006659|phosphatidylserine biosynthetic process	NA	NA
PtpAffx.11257.1.A1_at	A	A1TS	POPTR_0009s06400	POPTR_0009s06400 (11)	scaffold_9:6194035-6194559(+) (11)	NA	NA	NA	AT3G52070.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g11780.1	expressed protein	Medtr4g049880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112582.1.A1_at	A	A1MS	POPTR_0005s19190	POPTR_0005s19190 (10)	scaffold_5:17805065-17805483(-) (10)	NA	NA	NA	AT1G43130.1	like COV 2 	LOC_Os01g64780.2	"COV1, putative, expressed"	Medtr3g144480.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112583.1.A1_at	A	A1MS	POPTR_0008s16540	POPTR_0008s16540 (11)	scaffold_8:11108815-11109258(+) (11)	NA	Q8L7R5	UPF0497 membrane protein At3g23200	AT3G23200.1	Uncharacterised protein family (UPF0497) 	LOC_Os09g07480.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g018930.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1126.1.A1_at	A	A1TS	POPTR_0013s04660	POPTR_0013s04660 (11)	scaffold_13:3207183-3207286(+) (11)	NA	P46976	Glycogenin-1	AT5G18480.1	plant glycogenin-like starch initiation protein 6 	LOC_Os02g41520.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g093950.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.1126.2.S1_at	A	A1TS	POPTR_0007s11880	POPTR_0007s11880 (11)	scaffold_7:12238290-12238391(-) (11)	NA	Q8VZB9	60S ribosomal protein L10a-1	AT1G08360.1	Ribosomal protein L1p/L10e family 	LOC_Os01g64090.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.1126.3.A1_at	A	A1TS	POPTR_0004s21290	POPTR_0004s21290 (11)	scaffold_1265:3921-4209(+) (9)//scaffold_4:20480251-20480824(-) (11)	NA	Q8VZB9	60S ribosomal protein L10a-1	AT1G08360.1	Ribosomal protein L1p/L10e family 	LOC_Os01g64090.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr5g013020.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.112604.1.A1_at	A	A1TS	POPTR_0012s04500	POPTR_0012s04500 (11)	scaffold_12:3787478-3788007(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.112619.1.A1_at	A	A1TS	POPTR_0011s10800	POPTR_0011s10800 (11)	scaffold_11:13386448-13387670(+) (11)	NA	Q9URW6	SH3 domain-containing protein PJ696.02	AT1G29800.2	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os02g13890.1	"FYVE zinc finger domain containing protein, expressed"	Medtr2g021650.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11262.1.A1_at	A	A1TS	POPTR_0012s07540	POPTR_0012s07540 (9)	scaffold_12:8462756-8463349(+) (9)	NA	Q6P2B1	Transportin-3	AT5G62600.1	ARM repeat superfamily protein 	LOC_Os10g33770.1	importin-beta N-terminal domain containing protein	AC233677_6.1	Exportin-1/Importin-beta-like AC233677.2 40883-35967 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.112626.1.A1_s_at	A	A1TS	POPTR_0005s16630	POPTR_0005s16630 (11)	scaffold_5:13611392-13611434(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112651.1.A1_at	A	A1TS	POPTR_0006s21580	POPTR_0006s21580 (9)	scaffold_6:20630479-20631131(+) (9)	NA	NA	NA	AT3G11760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G04860.1); Has 84 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g44670.1	expressed protein	Medtr1g149420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11267.1.S1_at	A	A1TS	POPTR_0001s21690	POPTR_0001s21690 (11)	scaffold_1:20236937-20238675(+) (11)	NA	Q9LU85	"Probable plastid-lipid-associated protein 4, chloroplastic"	AT3G26070.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os03g49720.1	"PAP fibrillin family domain containing protein, expressed"	Medtr2g007410.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.112675.1.A1_at	A	A1TS	POPTR_0010s26050	POPTR_0010s26050 (9)	scaffold_10:21431284-21431755(-) (9)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os02g41910.1	"OsFBO12 - F-box and other domain containing protein, expressed"	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11269.1.S1_at	A	A1TS	POPTR_0001s38280	POPTR_0001s38280 (11)	scaffold_1:37375020-37375414(+) (11)	NA	NA	NA	AT3G15070.2	RING/U-box superfamily protein 	LOC_Os01g47740.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g092000.1	"zinc finger protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11269.2.S1_at	A	A1TS	POPTR_0011s09950	POPTR_0011s09950 (11)	scaffold_11:12396119-12396820(-) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT1G53190.2	RING/U-box superfamily protein 	LOC_Os01g47740.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g092080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1127.1.S1_s_at	A	A2TS	POPTR_0008s07800	POPTR_0010s18570 (11)//POPTR_0008s07800 (11)	scaffold_10:16775440-16776619(+) (11)//scaffold_8:4807090-4808334(-) (11)	NA	Q5ZK33	"LETM1 and EF-hand domain-containing protein 1, mitochondrial"	AT1G65540.1	LETM1-like protein 	LOC_Os04g41950.1	"calcium-binding mitochondrial protein anon-60Da, putative, expressed"	Medtr7g090240.1	LETM1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11271.1.S1_a_at	A	A1TS	POPTR_0010s02820	POPTR_0010s02820 (10)	scaffold_10:3302928-3304328(-) (10)	NA	NA	NA	AT4G15545.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os05g33620.1	expressed protein	Medtr8g139920.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112731.1.A1_at	A	A1TS	POPTR_0001s20870	POPTR_0001s20870 (11)	scaffold_1:19110247-19111517(-) (11)	NA	NA	NA	AT1G52510.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os04g55180.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr4g005710.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112742.1.A1_at	A	A1TS	POPTR_0002s08180	POPTR_0002s08180 (9)	scaffold_2:5677892-5677985(+) (9)	NA	Q6S001	Kinesin-related protein 11	AT1G21730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53520.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g112390.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.112745.1.A1_at	A	A1TS	POPTR_0002s10080	POPTR_0002s10080 (9)	scaffold_2:7245106-7245495(-) (9)	NA	Q940J1	Homeobox-leucine zipper protein ATHB-16	AT4G40060.1	homeobox protein 16 	LOC_Os08g37580.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g110250.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.112746.1.A1_at	A	A1TS	POPTR_0007s12760	POPTR_0007s12760 (11)	scaffold_7:13025259-13025794(+) (11)	NA	Q9FL03	Scarecrow-like protein 4	AT5G66770.1	GRAS family transcription factor 	LOC_Os03g51330.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g107060.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11275.1.A1_a_at	A	A1TS	POPTR_0007s07800	POPTR_0007s07800 (11)	scaffold_7:6222518-6223129(-) (11)	NA	Q5M9F1	RNA-binding protein 34	AT3G18610.1	nucleolin like 2 	LOC_Os04g52960.1	"nucleolin, putative, expressed"	Medtr4g101170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.112753.1.A1_s_at	A	A1TS	POPTR_0001s11390	POPTR_0001s11390 (11)	scaffold_1:8850329-8850808(+) (11)	NA	NA	NA	AT1G14430.1	glyoxal oxidase-related protein 	LOC_Os03g15320.1	"glyoxal oxidase-related, putative, expressed"	Medtr1g028280.1	"Glyoxal oxidase, N-terminal; ; ; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112783.1.S1_s_at	A	A1TS	POPTR_0019s10360	POPTR_0019s10360 (11)	scaffold_19:11923252-11926007(-) (11)	NA	Q2TAP9	Abhydrolase domain-containing protein 11	AT4G10030.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g66240.1	"mitochondrion protein, putative, expressed"	Medtr5g008770.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112784.1.A1_at	A	A1MS	POPTR_0010s06070	POPTR_0010s06070 (11)	scaffold_10:7498708-7499171(-) (11)	NA	Q8YTC2	Uncharacterized WD repeat-containing protein alr2800	AT1G24530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g50740.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g037080.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112794.1.A1_at	A	A1TS	POPTR_0014s01950	POPTR_0014s01950 (11)	scaffold_14:1747461-1747986(-) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112858.1.A1_at	A	A1TS	POPTR_0016s06200	POPTR_0016s06200 (11)	scaffold_16:4146620-4147127(-) (11)	NA	Q9P6N5	Dihydrosphingosine 1-phosphate phosphatase C823.11	AT3G58490.1	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os03g59070.1	"phosphatase, putative, expressed"	AC235488_22.2	"Phosphoesterase, PA-phosphatase related AC235488.1 98822-95448 F EGN_Mt090430 200"	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.112859.1.A1_s_at	A	A1TS	POPTR_0012s07620	POPTR_0012s07620 (11)	scaffold_12:8537597-8537812(+) (11)	NA	P34909	General negative regulator of transcription subunit 4	AT5G62910.1	RING/U-box superfamily protein 	LOC_Os02g37030.1	"protein binding protein, putative, expressed"	Medtr6g009590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112861.1.A1_at	A	A1MS	POPTR_0002s06750	POPTR_0002s06750 (10)	scaffold_2:4537512-4537904(-) (10)	NA	NA	NA	AT1G43580.1	Sphingomyelin synthetase family protein 	LOC_Os04g34620.1	expressed protein	Medtr1g125060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112867.1.A1_at	A	A1TS	POPTR_0008s05410	POPTR_0008s05410 (10)	scaffold_8:3136098-3136639(+) (10)	NA	P09189	Heat shock cognate 70 kDa protein	AT5G02500.1	heat shock cognate protein 70-1 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g025840.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112875.1.A1_at	A	A1TS	POPTR_0009s04980	POPTR_0009s04980 (10)	scaffold_9:5193618-5194004(+) (10)	NA	Q9FVN0	Ammonium transporter 1 member 3	AT4G13510.1	ammonium transporter 1;1 	LOC_Os04g43070.1	"ammonium transporter protein, putative, expressed"	Medtr1g065600.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.112899.1.A1_at	A	A1TS	POPTR_0013s06650	POPTR_0013s06650 (9)	scaffold_13:5330427-5331515(-) (9)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G33110.1	MATE efflux family protein 	LOC_Os12g03260.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.1129.1.A1_at	A	A1TS	POPTR_0019s06220	POPTR_0019s06220 (10)	scaffold_19:6834728-6835153(+) (10)	NA	P59287	"Casbene synthase, chloroplastic"	AT5G23960.1	terpene synthase 21 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr6g008950.1	Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.112916.1.A1_at	A	A1TS	POPTR_0002s07060	POPTR_0002s07060 (11)	scaffold_2:4780550-4781094(+) (11)	NA	O49279	SKP1-interacting partner 15	AT1G76920.1	F-box family protein 	LOC_Os04g57290.1	"OsFBX153 - F-box domain containing protein, expressed"	Medtr7g015440.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.112917.1.A1_a_at	A	A2TS	POPTR_0001s28620	POPTR_0009s07810 (11)//POPTR_0001s28620 (11)	scaffold_1:27385305-27385492(-) (11)//scaffold_9:7252766-7252953(-) (11)	NA	O64738	"Zinc transporter 6, chloroplastic"	AT2G30080.1	ZIP metal ion transporter family 	LOC_Os05g07210.1	"metal cation transporter, putative, expressed"	Medtr5g080290.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.112917.1.A1_at	A	A1TS	POPTR_0001s28620	POPTR_0001s28620 (9)	scaffold_1:27385133-27385502(-) (9)	NA	O64738	"Zinc transporter 6, chloroplastic"	AT2G30080.1	ZIP metal ion transporter family 	LOC_Os05g07210.1	"metal cation transporter, putative, expressed"	Medtr5g080290.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.112917.2.A1_at	A	A1TS	POPTR_0009s07810	POPTR_0009s07810 (11)	scaffold_9:7252605-7253839(-) (11)	NA	O64738	"Zinc transporter 6, chloroplastic"	AT2G30080.1	ZIP metal ion transporter family 	LOC_Os05g07210.1	"metal cation transporter, putative, expressed"	Medtr5g080290.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.112927.1.A1_at	A	A1TS	POPTR_0013s00410	POPTR_0013s00410 (9)	scaffold_13:170465-170912(+) (11)	POPTR_0005s00490 (8)	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os02g09900.1	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.112940.1.A1_at	A	A1TS	POPTR_0003s06520	POPTR_0003s06520 (9)	scaffold_3:8018813-8019178(+) (9)	NA	Q9SYG9	Cation/calcium exchanger 4	AT1G54115.1	cation calcium exchanger 4 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr8g025300.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.112959.1.S1_at	A	A1TS	POPTR_0003s21820	POPTR_0003s21820 (11)	scaffold_3:19835990-19836157(+) (11)	NA	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113001.1.S1_at	A	A1TS	POPTR_0006s16050	POPTR_0006s16050 (11)	scaffold_6:13871949-13874131(+) (11)	NA	Q9T0K7	3-hydroxyisobutyryl-CoA hydrolase-like protein 3	AT4G13360.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os06g39344.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr4g158540.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11307.1.A1_at	A	A1TS	POPTR_0012s06850	POPTR_0012s06850 (11)	scaffold_12:7347985-7348426(+) (11)	NA	Q9BY12	S phase cyclin A-associated protein in the endoplasmic reticulum	NA	NA	LOC_Os06g12876.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113074.1.S1_s_at	A	A1TS	POPTR_0010s17630	POPTR_0010s17630 (11)	scaffold_10:16140341-16140846(+) (11)	NA	NA	NA	AT2G02960.3	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os08g33860.2	"zinc finger, C3HC4 type, putative, expressed"	Medtr5g044040.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113098.1.S1_at	A	A1TS	POPTR_0001s22820	POPTR_0001s22820 (11)	scaffold_1:21701137-21701183(-) (11)	NA	A7RWD2	Probable cytosolic iron-sulfur protein assembly protein	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113098.1.S1_s_at	A	A1TS	POPTR_0001s22820	POPTR_0001s22820 (11)	scaffold_1:21700667-21701058(-) (11)	NA	A7RWD2	Probable cytosolic iron-sulfur protein assembly protein	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g14830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g127320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113124.1.S1_at	A	A1MS	POPTR_0001s28050	POPTR_0001s28050 (9)	scaffold_1:26859752-26859995(+) (9)	NA	Q8RY82	F-box protein At2g32560	AT2G32560.1	F-box family protein 	LOC_Os01g17390.1	"OsFBX5 - F-box domain containing protein, expressed"	Medtr5g096190.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113139.1.S1_at	A	A1TS	POPTR_0014s12450	POPTR_0014s12450 (11)	scaffold_14:9181222-9181729(+) (11)	NA	Q8LEA8	Phytochrome A-associated F-box protein	AT4G02440.1	F-box family protein 	LOC_Os05g30190.1	"phytochrome A-associated F-box protein, putative, expressed"	Medtr8g068260.1	"Phytochrome A-associated F-box protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11317.1.A1_x_at	A	A1TS	POPTR_0010s16640	POPTR_0010s16640 (11)	scaffold_10:15532803-15533230(-) (11)	NA	Q93V72	"Glucan endo-1,3-beta-glucosidase-like protein At1g69295"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11317.2.A1_a_at	A	A1TS	POPTR_0010s16640	POPTR_0010s16640 (11)	scaffold_10:15532888-15533358(-) (11)	NA	Q93V72	"Glucan endo-1,3-beta-glucosidase-like protein At1g69295"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11317.6.A1_a_at	A	A1TS	POPTR_0010s16640	POPTR_0010s16640 (11)	scaffold_10:15532803-15534959(-) (11)	NA	Q93V72	"Glucan endo-1,3-beta-glucosidase-like protein At1g69295"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11319.1.A1_at	A	A1TS	POPTR_0008s15560	POPTR_0008s15560 (11)	scaffold_8:10340734-10341173(+) (11)	NA	Q9LUJ3	Protein RDM1	AT3G22680.1	RNA-DIRECTED DNA METHYLATION 1 	LOC_Os06g42430.3	expressed protein	Medtr5g006750.1	Protein of unknown function DUF1950 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113201.1.S1_at	A	A1TS	POPTR_0006s12180	POPTR_0006s12180 (9)	scaffold_6:9323610-9324414(-) (9)	NA	Q6PDQ2	Chromodomain-helicase-DNA-binding protein 4	AT2G36720.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113202.1.S1_at	A	A1TS	POPTR_0007s09360	POPTR_0007s09360 (11)	scaffold_7:8744643-8745132(-) (11)	NA	NA	NA	AT4G35730.1	Regulator of Vps4 activity in the MVB pathway protein 	NA	NA	Medtr8g088800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113217.1.S1_s_at	A	A1TS	POPTR_0018s02010	POPTR_0018s02010 (11)	scaffold_18:1808032-1808325(+) (11)	NA	Q8VY97	UPF0480 protein At4g32130	AT2G25310.1	Protein of unknown function (DUF2012) 	LOC_Os06g43650.2	"secreted salivary protein, putative, expressed"	Medtr3g137720.1	Carbohydrate-binding-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11322.1.A1_s_at	A	A1TS	POPTR_0008s15870	POPTR_0008s15870 (11)	scaffold_8:10592705-10593151(-) (11)	NA	NA	NA	AT4G00231.1	ARM repeat superfamily protein 	LOC_Os03g02720.1	expressed protein	Medtr7g083540.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113221.1.S1_s_at	A	A1TS	POPTR_0012s05590	POPTR_0012s05590 (11)	scaffold_12:5242993-5244279(-) (11)	NA	P41111	Translation initiation factor eIF-2B subunit delta	AT5G38640.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g44310.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.11324.1.A1_at	A	A1TS	POPTR_0018s08830	POPTR_0018s08830 (10)	scaffold_18:9752384-9752890(-) (10)	NA	Q54XX9	PXMP2/4 family protein 2	AT3G24570.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os01g12800.1	"peroxisomal membrane protein, putative, expressed"	Medtr1g009450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.113243.1.S1_at	A	A1TS	POPTR_0005s09860	POPTR_0005s09860 (10)	scaffold_5:6940875-6941965(-) (10)	NA	O04866	"Acetylornithine aminotransferase, mitochondrial"	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.113258.1.S1_at	A	A1TS	POPTR_0014s16200	POPTR_0014s16200 (11)	scaffold_14:12301964-12302517(-) (11)	NA	Q6ICW6	Probable serine/threonine-protein kinase WNK11	AT5G55560.1	Protein kinase superfamily protein 	LOC_Os07g39520.1	"STE_PAK_Ste20_Slob_Wnk.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g105230.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11326.1.A1_at	A	A1TS	POPTR_0011s06760	POPTR_0011s06760 (11)	scaffold_11:7421205-7421695(+) (11)	NA	NA	NA	AT1G29760.1	Putative adipose-regulatory protein (Seipin) 	LOC_Os09g36360.1	"protein of unknown function containing protein, expressed"	Medtr4g136210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113275.1.S1_at	A	A1TS	POPTR_0010s17350	POPTR_0010s17350 (11)	scaffold_10:15985877-15986131(+) (11)	NA	O49255	NAC domain-containing protein 29	AT1G69490.1	"NAC-like, activated by AP3/PI "	LOC_Os03g21060.1	"No apical meristem protein, putative, expressed"	Medtr5g045070.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.113282.1.A1_at	A	A1MS	POPTR_0001s32370	POPTR_0001s32370 (11)	scaffold_1:30731249-30731518(+) (11)	NA	Q6GL77	UBX domain-containing protein 1	AT1G04850.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os02g30180.1	"ZOS2-07 - C2H2 zinc finger protein, expressed"	Medtr4g133680.1	"Ubiquitin-associated; PUG; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113282.2.A1_at	A	A1TA	POPTR_0016s12180	POPTR_0016s12180 (11)	scaffold_16:11519779-11520172(-) (11)	NA	NA	NA	AT5G01260.2	Carbohydrate-binding-like fold 	LOC_Os05g37450.1	"starch binding domain containing protein, putative, expressed"	Medtr4g012900.1	"Glycoside hydrolase, starch-binding; "	GO:0005975|carbohydrate metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11331.3.S1_at	A	A1MS	POPTR_0008s06700	POPTR_0008s06700 (10)	scaffold_8:4011426-4011885(-) (10)	NA	P59234	Protein yippee-like	AT2G40110.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g093410.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113361.1.S1_at	A	A1TS	POPTR_0019s08750	POPTR_0019s08750 (11)	scaffold_19:10289660-10290714(+) (11)	NA	Q8YZS3	UPF0176 protein all0384	AT2G40760.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os05g25780.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr5g076610.1	Rhodanese-like; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113385.1.S1_at	A	A1TS	POPTR_0005s27790	POPTR_0005s27790 (11)	scaffold_5:25286393-25287334(-) (11)	NA	NA	NA	AT2G33620.4	AT hook motif DNA-binding family protein 	LOC_Os08g40150.2	"AT hook motif domain containing protein, expressed"	Medtr8g102740.1	Protein of unknown function DUF296 	NA	GO:0003677|DNA binding	NA
PtpAffx.113478.1.S1_s_at	A	A1TS	POPTR_0018s10340	POPTR_0018s10340 (11)	scaffold_18:11265092-11266875(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.1	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113508.1.S1_at	A	A1TS	POPTR_0012s09630	POPTR_0012s09630 (11)	scaffold_12:10600266-10600540(+) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11351.1.A1_at	A	A1TA	POPTR_0010s21680	POPTR_0010s21680 (10)	scaffold_10:18871471-18871845(+) (10)	NA	P41891	Protein gar2	AT3G55340.1	phragmoplastin interacting protein 1 	LOC_Os05g02400.1	"RNA recognition motif containing protein, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.113518.1.S1_at	A	A1TS	POPTR_0003s06820	POPTR_0003s06820 (10)	scaffold_3:8359860-8361254(-) (10)	NA	NA	NA	AT1G54070.1	Dormancy/auxin associated family protein 	LOC_Os09g26620.1	"auxin-repressed protein, putative, expressed"	Medtr8g025840.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113548.1.S1_at	A	A1TS	POPTR_0003s01860	POPTR_0003s01860 (11)	scaffold_3:1728371-1729502(-) (11)	NA	Q9SZC9	Putative copper-transporting ATPase PAA1	AT4G33520.1	P-type ATP-ase 1 	LOC_Os08g37950.1	"copper-transporting ATPase PAA1, putative, expressed"	Medtr7g143650.1	"ATPase, E1-E2 type; Heavy metal transport/detoxification protein "	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.113553.1.S1_a_at	A	A2TS	POPTR_0007s14960	POPTR_0007s14960 (11)//POPTR_1342s00200 (11)	scaffold_1342:2774-3151(+) (11)//scaffold_14:983217-983590(-) (9)//scaffold_7:14642562-14642901(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.113553.1.S1_at	A	A1TS	POPTR_1342s00200	POPTR_1342s00200 (10)	scaffold_1342:2576-3420(+) (10)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113553.2.S1_at	A	A1TS	POPTR_0007s14960	POPTR_0007s14960 (11)	scaffold_7:14639397-14642994(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
PtpAffx.113579.1.S1_s_at	A	A1TS	POPTR_0004s05020	POPTR_0004s05020 (11)	scaffold_4:3772931-3773996(+) (11)	NA	Q946Y7	Syntaxin-61	AT1G28490.1	syntaxin of plants 61 	LOC_Os01g73230.1	"syntaxin 6, putative, expressed"	Medtr5g100170.1	Syntaxin/epimorphin family 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.113579.2.S1_at	A	A1TS	POPTR_0011s05870	POPTR_0011s05870 (10)	scaffold_11:5900645-5902220(+) (10)	NA	Q946Y7	Syntaxin-61	AT1G28490.1	syntaxin of plants 61 	LOC_Os01g73230.1	"syntaxin 6, putative, expressed"	Medtr5g100170.1	Syntaxin/epimorphin family 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.113597.1.S1_at	A	A1TS	POPTR_0006s13050	POPTR_0006s13050 (11)	scaffold_6:10266718-10267315(-) (11)	NA	Q4R6F8	T-complex protein 1 subunit beta	AT5G20890.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g42220.1	"T-complex protein, putative, expressed"	Medtr3g024690.1	"Protein kinase; GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.11360.1.A1_at	A	A1TS	POPTR_0001s03520	POPTR_0001s03520 (11)	scaffold_1:2825991-2826671(+) (11)	NA	Q39131	Lamin-like protein	AT5G15350.1	early nodulin-like protein 17 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g021700.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.11360.3.S1_a_at	A	A1TS	POPTR_0003s18150	POPTR_0003s18150 (11)	scaffold_3:17344592-17345228(-) (11)	NA	Q39131	Lamin-like protein	AT5G15350.1	early nodulin-like protein 17 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g021700.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.113671.1.S1_at	A	A1TS	POPTR_0001s01500	POPTR_0001s01500 (11)	scaffold_1:1117300-1118598(-) (11)	NA	Q6NS09	Transmembrane protein 45B	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os11g40570.3	"plant viral response family protein, putative, expressed"	Medtr5g027370.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113672.1.S1_s_at	A	A1TS	POPTR_0014s01640	POPTR_0014s01640 (11)	scaffold_14:1527759-1528333(+) (11)	NA	Q5BIM8	DNA excision repair protein ERCC-8	AT1G27840.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g20430.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113676.1.S1_at	A	A1TS	POPTR_0001s09300	POPTR_0001s09300 (11)	scaffold_1:7102300-7102432(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT1G63470.1	AT hook motif DNA-binding family protein 	LOC_Os02g57820.1	"AT hook motif domain containing protein, expressed"	Medtr5g010440.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
PtpAffx.113677.1.S1_at	A	A1TS	POPTR_0001s01380	POPTR_0001s01380 (11)	scaffold_1:1022104-1024110(+) (11)	NA	Q94II3	Probable methyltransferase PMT21	AT4G19120.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr5g027150.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.113686.1.S1_s_at	A	A1TS	POPTR_0015s13360	POPTR_0015s13360 (11)	scaffold_15:13356583-13356823(+) (11)	NA	Q4FE45	E3 ubiquitin-protein ligase XBAT33	AT5G07270.1	XB3 ortholog 3 in Arabidopsis thaliana 	LOC_Os10g37730.1	"pollen ankyrin, putative, expressed"	AC146807_5.1	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1137.1.A1_at	A	A1TS	POPTR_0001s00720	POPTR_0001s00720 (11)	scaffold_1:599755-600158(-) (11)	NA	Q0V8M0	Protein KRI1 homolog	AT3G24080.2	KRR1 family protein 	LOC_Os05g41100.1	"protein kri1, putative, expressed"	Medtr2g129820.1	Krr1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113703.1.S1_at	A	A1MS	POPTR_0001s29010	POPTR_0001s29010 (11)	scaffold_1:27763879-27764087(-) (11)	POPTR_0001s28990 (8)	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.3	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113703.3.S1_a_at	A	A3TS	POPTR_0001s28990	POPTR_0001s28990 (11)//POPTR_0001s29010 (11)//POPTR_0009s08220 (11)	scaffold_1:27751851-27752805(-) (11)//scaffold_1:27764098-27765053(-) (11)//scaffold_9:7567099-7568093(-) (11)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.3	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.113703.3.S1_at	A	A1TS	POPTR_0009s08220	POPTR_0009s08220 (11)	scaffold_9:7567144-7568051(-) (11)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.1	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.113719.1.S1_at	A	A1TS	POPTR_0017s04030	POPTR_0017s04030 (11)	scaffold_17:3030521-3031515(-) (11)	NA	O80568	Inositol-tetrakisphosphate 1-kinase 4	AT2G43980.1	"inositol 1,3,4-trisphosphate 5/6-kinase 4 "	LOC_Os09g34300.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.11372.1.A1_at	A	A1TS	POPTR_0002s05110	POPTR_0002s05110 (11)	scaffold_2:3322257-3323083(-) (11)	NA	NA	NA	AT2G48140.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g57980.1	"LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr1g084060.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113737.1.S1_at	A	A1TS	POPTR_0009s11630	POPTR_0009s11630 (11)	scaffold_9:9616962-9618917(-) (11)	NA	Q6NLY8	HVA22-like protein k	AT4G36720.1	HVA22-like protein K 	LOC_Os07g38100.1	"HVA22, putative, expressed"	Medtr5g019610.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11374.1.S1_s_at	A	A1TS	POPTR_0015s05710	POPTR_0015s05710 (11)	scaffold_15:6056887-6057151(+) (11)	NA	Q9SH59	Reticulon-like protein B3	AT1G64090.1	Reticulan like protein B3 	LOC_Os05g45050.2	"reticulon domain containing protein, putative, expressed"	Medtr1g126140.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.113758.1.S1_s_at	A	A1TS	POPTR_0003s12230	POPTR_0003s12230 (11)	scaffold_3:12879912-12880777(+) (11)	NA	NA	NA	AT4G11740.1	Ubiquitin-like superfamily protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113773.1.S1_at	A	A1TS	POPTR_0003s09630	POPTR_0003s09630 (9)	scaffold_3:10906345-10908353(-) (9)	NA	P23922	Transcription factor HBP-1a	AT2G35530.1	basic region/leucine zipper transcription factor 16 	LOC_Os12g13170.2	"transcription factor, putative, expressed"	Medtr5g028830.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.113782.1.S1_s_at	A	A1TS	POPTR_0004s00330	POPTR_0004s00330 (10)	scaffold_4:89918-90524(+) (11)	NA	NA	NA	AT3G01435.1	Expressed protein 	LOC_Os02g09600.3	expressed protein	Medtr1g028460.1	hypothetical protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
PtpAffx.113801.1.S1_s_at	A	A2TS	POPTR_0013s07710	POPTR_0019s07170 (11)//POPTR_0013s07710 (11)	scaffold_13:6555919-6556189(+) (11)//scaffold_19:7912431-7912689(+) (11)	NA	Q5U2W5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.113831.1.A1_s_at	A	A1TS	POPTR_0005s11710	POPTR_0005s11710 (11)	scaffold_5:8535344-8535516(+) (11)	NA	NA	NA	AT2G17972.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; Has 34 Blast hits to 34 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os06g50130.1	expressed protein	Medtr8g090030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113839.1.A1_at	A	A1TS	POPTR_0001s01120	POPTR_0001s01120 (11)	scaffold_1:870916-871195(-) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT1G31420.2	Leucine-rich repeat protein kinase family protein 	LOC_Os03g16010.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g026640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.113856.1.A1_at	A	A1TS	POPTR_0016s06640	POPTR_0016s06640 (11)	scaffold_16:4451502-4451634(+) (11)	NA	Q5IH14	Sucrose-phosphatase 1	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os02g05030.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.113868.1.A1_at	A	A1TS	POPTR_0016s10940	POPTR_0016s10940 (9)	scaffold_16:9328381-9329236(-) (9)	NA	Q8VCE1	DnaJ homolog subfamily C member 28	AT5G03560.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44650.1	expressed protein	Medtr1g074310.1	"J domain-containing protein C21orf55 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113871.1.A1_at	A	A1TS	POPTR_0012s01900	POPTR_0012s01900 (11)	scaffold_12:1483704-1484151(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G60470.1	Plant protein of unknown function (DUF247) 	LOC_Os11g34090.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1139.1.S1_a_at	A	A1TS	POPTR_0001s31670	POPTR_0001s31670 (11)	scaffold_1:30035502-30037130(+) (11)	NA	Q9H3K6	BolA-like protein 2	AT5G09830.1	BolA-like family protein 	LOC_Os01g64680.1	"bolA, putative, expressed"	Medtr4g141780.1	BolA-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11390.1.S1_at	A	A1TS	POPTR_0003s07760	POPTR_0003s07760 (11)	scaffold_3:9282627-9283325(+) (11)	NA	Q05466	Homeobox-leucine zipper protein HAT4	AT4G16780.1	homeobox protein 2 	LOC_Os10g41230.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11390.2.S1_at	A	A1TS	POPTR_0003s07760	POPTR_0003s07760 (11)	scaffold_3:9284406-9284771(+) (11)	NA	Q05466	Homeobox-leucine zipper protein HAT4	AT4G16780.1	homeobox protein 2 	LOC_Os10g41230.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11390.3.A1_a_at	A	A1TS	POPTR_0003s07760	POPTR_0003s07760 (11)	scaffold_3:9283921-9284583(+) (11)	NA	Q05466	Homeobox-leucine zipper protein HAT4	AT4G16780.1	homeobox protein 2 	LOC_Os10g41230.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.113905.1.A1_s_at	A	A1TS	POPTR_0008s14730	POPTR_0008s14730 (11)	scaffold_8:9776437-9776868(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113940.1.A1_at	A	A1TS	POPTR_0018s01270	POPTR_0018s01270 (11)	scaffold_18:1236160-1236636(-) (11)	NA	Q3S4B7	3-hydroxybenzoate 6-hydroxylase	AT5G11330.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os06g39660.1	"FAD binding domain containing protein, expressed"	Medtr1g013200.1	FAD dependent oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113942.1.A1_at	A	A1MA	POPTR_0018s09120	POPTR_0018s09120 (11)	scaffold_18:10024337-10024729(-) (11)	NA	Q9SVV2	Probable xyloglucan endotransglucosylase/hydrolase protein 26	AT4G28850.1	xyloglucan endotransglucosylase/hydrolase 26 	LOC_Os06g48180.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr4g159420.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.113964.2.A1_a_at	A	A1TS	POPTR_0011s02350	POPTR_0011s02350 (11)	scaffold_11:2231680-2231989(+) (11)	NA	Q93V43	Transcription factor TCP2	AT4G18390.2	"TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 "	LOC_Os07g05720.1	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.113973.1.A1_s_at	A	A1TS	POPTR_0010s26110	POPTR_0010s26110 (11)	scaffold_10:21456220-21456285(-) (11)	NA	Q8LSN3	Phytochrome-associated serine/threonine protein phosphatase	AT1G50370.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g49690.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g047030.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.11398.1.S1_at	A	A1TS	POPTR_0001s44510	POPTR_0001s44510 (11)	scaffold_1:44911658-44912117(+) (11)	NA	Q8LC95	Early nodulin-like protein 3	AT3G20570.1	early nodulin-like protein 9 	LOC_Os01g57880.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g110820.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.113981.1.A1_at	A	A1TS	POPTR_0008s12210	POPTR_0008s12210 (11)	scaffold_8:7881630-7881676(-) (11)	NA	Q39265	Zinc finger protein 6	AT1G68360.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g04120.1	"ZOS1-03 - C2H2 zinc finger protein, expressed"	Medtr1g140600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.113981.1.A1_s_at	A	A1TS	POPTR_0008s12210	POPTR_0008s12210 (11)	scaffold_8:7881451-7881621(-) (11)	NA	Q39265	Zinc finger protein 6	AT1G68360.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os01g04120.1	"ZOS1-03 - C2H2 zinc finger protein, expressed"	Medtr1g140600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11399.1.S1_at	A	A1TS	POPTR_0006s06160	POPTR_0006s06160 (11)	scaffold_6:4373113-4375772(-) (11)	NA	Q93VD3	CBL-interacting serine/threonine-protein kinase 23	AT1G30270.1	CBL-interacting protein kinase 23 	LOC_Os07g05620.2	"CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g056750.1	Protein kinase; NAF; 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.113991.1.A1_at	A	A1TS	POPTR_0004s18090	POPTR_0004s18090 (9)	scaffold_4:18103858-18104086(+) (9)	NA	P35133	Ubiquitin-conjugating enzyme E2 10	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os02g02830.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g098530.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.1140.1.A1_at	A	A1MS	POPTR_0003s15150	POPTR_0003s15150 (11)	scaffold_3:15012632-15013067(-) (11)	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT2G02370.2	SNARE associated Golgi protein family 	LOC_Os03g25750.1	"SNARE associated Golgi protein, putative, expressed"	Medtr2g034030.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114007.1.A1_s_at	A	A1TS	POPTR_0006s09110	POPTR_0006s09110 (11)	scaffold_6:6735056-6735363(+) (11)	NA	NA	NA	AT5G02090.1	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g38264.1	expressed protein	Medtr4g018920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11401.1.S1_at	A	A1TS	POPTR_0019s05120	POPTR_0019s05120 (9)	scaffold_19:5355763-5356255(-) (9)	NA	NA	NA	AT5G18130.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g59180.2	expressed protein	Medtr7g102530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11401.4.A1_s_at	A	A1TS	POPTR_0013s05380	POPTR_0013s05380 (10)	scaffold_13:3846103-3846161(+) (10)	NA	NA	NA	AT5G18130.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g59180.2	expressed protein	Medtr7g102530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11401.5.A1_at	A	A1TS	POPTR_0013s05380	POPTR_0013s05380 (11)	scaffold_13:3845651-3846221(+) (11)	NA	NA	NA	AT5G18130.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g59180.2	expressed protein	Medtr7g102530.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114012.1.A1_at	A	A1TS	POPTR_0014s05640	POPTR_0014s05640 (11)	scaffold_14:4201397-4201455(+) (11)	NA	O82528	60S ribosomal protein L15	AT4G16720.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.114042.1.A1_s_at	A	A1TS	POPTR_0004s24130	POPTR_0004s24130 (11)	scaffold_4:22858962-22859114(-) (11)	NA	Q9SW11	U-box domain-containing protein 35	AT4G25160.1	U-box domain-containing protein kinase family protein 	LOC_Os06g04880.1	"serine threonine kinase, putative, expressed"	Medtr3g009640.1	Protein kinase; U box 	GO:0006950|response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.114043.1.A1_at	A	A1TS	POPTR_0002s07040	POPTR_0002s07040 (11)	scaffold_2:4766367-4766716(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114053.1.A1_s_at	A	A1TS	POPTR_0007s00390	POPTR_0007s00390 (11)	scaffold_7:134602-134748(+) (11)	NA	P48979	Polygalacturonase	AT2G43890.1	Pectin lyase-like superfamily protein 	LOC_Os01g43490.1	"polygalacturonase, putative, expressed"	Medtr2g056320.1	"Regulator of chromosome condensation, RCC1; Parallel beta-helix repeat "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.114060.1.A1_at	A	A1TS	POPTR_0006s03780	POPTR_0006s03780 (10)	scaffold_6:2534804-2535108(-) (10)	NA	P32138	Alpha-glucosidase yihQ	AT3G45940.1	Glycosyl hydrolases family 31  protein 	LOC_Os01g16310.1	"glycosyl hydrolase, family 31, putative, expressed"	Medtr7g106800.1	"Glycoside hydrolase, family 31 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.114066.1.A1_at	A	A1TS	POPTR_0008s02280	POPTR_0008s02280 (11)	scaffold_8:1098075-1099286(+) (11)	NA	Q5SR56	Hippocampus abundant transcript-like protein 1	AT2G16980.2	Major facilitator superfamily protein 	LOC_Os11g05390.1	"transporter, major facilitator family, putative, expressed"	Medtr1g117260.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114067.2.A1_at	A	A1TS	POPTR_0016s08020	POPTR_0016s08020 (11)	scaffold_16:5818934-5819721(-) (11)	NA	Q9FVS1	F-box/kelch-repeat protein At1g57790	AT1G57790.1	F-box family protein 	LOC_Os08g34890.1	OsFBDUF46 - F-box and DUF domain containing protein	Medtr7g127580.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114067.3.S1_at	A	A1MA	POPTR_0006s22910	POPTR_0006s22910 (10)	scaffold_6:21773566-21775640(+) (11)	NA	Q9FVS1	F-box/kelch-repeat protein At1g57790	AT1G57790.1	F-box family protein 	LOC_Os08g34890.1	OsFBDUF46 - F-box and DUF domain containing protein	Medtr7g127580.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114068.1.S1_s_at	A	A1TS	POPTR_0015s13590	POPTR_0015s13590 (11)	scaffold_15:13473046-13473684(+) (11)	NA	Q9FXW4	Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT3G61040.1	"cytochrome P450, family 76, subfamily C, polypeptide 7 "	LOC_Os10g08540.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.114108.1.A1_s_at	A	A1TS	POPTR_0003s15120	POPTR_0003s15120 (11)	scaffold_3:14989949-14992019(+) (11)	NA	Q9C8Z4	Uncharacterized protein At3g06530	AT3G06530.2	ARM repeat superfamily protein 	LOC_Os04g46310.1	"HEAT repeat family protein, putative, expressed"	Medtr5g099720.1	"BP28, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114125.1.A1_at	A	A1TS	POPTR_0004s13380	POPTR_0004s13380 (11)	scaffold_4:13189419-13190450(+) (11)	NA	Q9CA64	Transcription factor bHLH135	AT3G28857.1	basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g26410.1	"bHLH family protein, putative, expressed"	Medtr5g040160.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114160.1.A1_at	A	A1TS	POPTR_0002s12350	POPTR_0002s12350 (11)	scaffold_2:9167556-9167597(+) (11)	NA	Q9M7N6	MFP1 attachment factor 1	AT1G47200.1	WPP domain protein 2 	LOC_Os03g11060.1	"MFP1 attachment factor 1, putative, expressed"	Medtr1g023740.1	"MFP1 attachment factor 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114168.1.A1_at	A	A1TS	POPTR_0001s23950	POPTR_0001s23950 (9)	scaffold_1:23331391-23331423(-) (9)	NA	NA	NA	AT3G13510.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114210.2.A1_at	A	A1MS	POPTR_0013s00610	POPTR_0013s00610 (11)	scaffold_13:293287-293429(-) (11)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.114215.1.A1_at	A	A1TS	POPTR_0002s24880	POPTR_0002s24880 (10)	scaffold_2:22093370-22093608(-) (10)	NA	NA	NA	AT4G13030.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g19280.1	expressed protein	Medtr7g062150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114237.1.A1_at	A	A1TA	POPTR_0016s13680	POPTR_0016s13680 (11)	scaffold_16:12856966-12857297(-) (11)	NA	P50160	Sex determination protein tasselseed-2	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g18740.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.11424.1.A1_s_at	A	A1TS	POPTR_0001s27620	POPTR_0001s27620 (11)	scaffold_1:26498836-26499245(+) (11)	NA	Q9LHJ8	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	AT3G12630.1	A20/AN1-like zinc finger family protein 	LOC_Os09g31200.1	"AN1-like zinc finger domain containing protein, expressed"	Medtr3g030430.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.11424.2.A1_s_at	A	A1TS	POPTR_0009s06840	POPTR_0009s06840 (11)	scaffold_9:6539358-6539675(+) (11)	NA	Q9LHJ8	Zinc finger A20 and AN1 domain-containing stress-associated protein 5	AT3G12630.1	A20/AN1-like zinc finger family protein 	LOC_Os09g31200.1	"AN1-like zinc finger domain containing protein, expressed"	Medtr3g030430.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.114249.1.A1_at	A	A1MS	POPTR_0001s08030	POPTR_0001s08030 (11)	scaffold_1:6086067-6086430(-) (11)	NA	P34205	Deoxyribodipyrimidine photo-lyase	AT1G12370.2	photolyase 1 	LOC_Os10g08580.1	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g011940.1	"DNA photolyase, FAD-binding "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.114249.1.A1_s_at	A	A1TS	POPTR_0001s08030	POPTR_0001s08030 (11)	scaffold_1:6086159-6086360(-) (11)	NA	P34205	Deoxyribodipyrimidine photo-lyase	AT1G12370.2	photolyase 1 	LOC_Os10g08580.1	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g011940.1	"DNA photolyase, FAD-binding "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.114251.1.A1_at	A	A1TS	POPTR_0005s22480	POPTR_0005s22480 (11)	scaffold_5:21402395-21402779(+) (11)	NA	Q8VWJ2	Probable WRKY transcription factor 28	AT4G18170.1	WRKY DNA-binding protein 28 	LOC_Os01g43650.2	"OsWRKY11 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g098600.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.114257.1.S1_at	A	A1TS	POPTR_0005s03720	POPTR_0005s03720 (11)	scaffold_5:2486305-2486775(-) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT1G54860.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11426.1.A1_at	A	A1TS	POPTR_0014s05790	POPTR_0014s05790 (11)	scaffold_14:4351054-4352069(+) (11)	NA	A5YKK6	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.1	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11426.2.S1_at	A	A1TS	POPTR_0002s14400	POPTR_0002s14400 (11)	scaffold_2:10681558-10681723(+) (11)	NA	A0JP85	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.1	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114262.1.A1_s_at	A	A1TS	POPTR_0006s01080	POPTR_0006s01080 (11)	scaffold_6:612942-613146(+) (11)	NA	A5PKH3	Fumarylacetoacetase	AT1G12050.1	"fumarylacetoacetase, putative "	LOC_Os02g10310.1	"fumarylacetoacetase, putative, expressed"	Medtr2g029700.1	Fumarylacetoacetase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0009072|aromatic amino acid family metabolic process	GO:0004334|fumarylacetoacetase activity	NA
PtpAffx.11427.1.A1_at	A	A1TS	POPTR_0017s02860	POPTR_0017s02860 (10)	scaffold_17:2077602-2077864(+) (11)	NA	Q9C7U5	"Glucan endo-1,3-beta-glucosidase 2"	AT1G66250.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g085920.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.114272.1.A1_at	A	A2TS	POPTR_0002s07460	POPTR_0002s07460 (10)//POPTR_0487s00220 (9)	scaffold_2:5104586-5105397(+) (10)//scaffold_487:2202-11304(+) (11)//scaffold_487:10777-11420(+) (9)	POPTR_0487s00200 (7)	P00303	Basic blue protein	AT2G02850.1	plantacyanin 	LOC_Os03g50160.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g137630.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.114277.1.A1_at	A	A1MS	POPTR_0007s07000	POPTR_0007s07000 (11)	scaffold_7:5342931-5343117(-) (11)	NA	NA	NA	AT2G22140.1	essential meiotic endonuclease 1B 	LOC_Os04g55500.1	expressed protein	Medtr4g141320.1	hypothetical protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0005515|protein binding||GO:0004518|nuclease activity||GO:0003677|DNA binding	NA
PtpAffx.114309.1.A1_s_at	A	A1TS	POPTR_0008s03540	POPTR_0008s03540 (11)	scaffold_8:1895179-1895452(-) (11)	NA	P35159	Ribosomal large subunit pseudouridine synthase B	AT2G39140.1	pseudouridine synthase family protein 	LOC_Os03g05806.1	"pseudouridine synthase family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.11431.1.S1_at	A	A1TS	POPTR_0003s08350	POPTR_0003s08350 (11)	scaffold_3:9735415-9735843(+) (11)	NA	NA	NA	AT4G17085.1	Putative membrane lipoprotein 	LOC_Os06g50090.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114321.1.A1_at	A	A1TS	POPTR_0001s33390	POPTR_0001s33390 (11)	scaffold_1:31565535-31566077(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G41040.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr3g150860.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.114332.1.A1_at	A	A1TS	POPTR_0006s04240	POPTR_0006s04240 (11)	scaffold_6:2906883-2907400(-) (11)	NA	Q9LZA6	Triacylglycerol lipase SDP1	AT5G04040.1	Patatin-like phospholipase family protein 	LOC_Os01g55650.1	"phospholipase, patatin family, putative, expressed"	Medtr7g107500.1	Patatin; ARF/SAR superfamily 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.11435.1.S1_at	A	A1TS	POPTR_0011s11270	POPTR_0011s11270 (11)	scaffold_11:13995701-13996259(-) (11)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT1G53300.1	tetratricopetide-repeat thioredoxin-like 1 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.114352.1.A1_at	A	A1TS	POPTR_0002s26170	POPTR_0002s26170 (11)	scaffold_2:23191942-23192412(+) (11)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
PtpAffx.114367.1.A1_at	A	A1TS	POPTR_0003s17740	POPTR_0003s17740 (11)	scaffold_3:17025619-17025888(-) (10)//scaffold_3:17038186-17038469(-) (11)	POPTR_0003s17730 (6)	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.114369.1.S1_at	A	A1TS	POPTR_0010s10450	POPTR_0010s10450 (11)	scaffold_10:10957467-10957946(-) (11)	NA	O80739	Putative potassium transporter 12	AT1G60160.1	Potassium transporter family protein 	LOC_Os09g21000.1	"potassium transporter, putative, expressed"	Medtr2g008870.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.11439.1.A1_at	A	A1TS	POPTR_0005s15740	POPTR_0005s15740 (11)	scaffold_5:12344685-12345665(+) (11)	NA	Q84L31	Putative DNA repair protein RAD23-3	AT3G02540.3	Rad23 UV excision repair protein family 	LOC_Os09g24200.1	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.114391.1.A1_at	A	A1TS	POPTR_0010s21000	POPTR_0010s21000 (11)	scaffold_10:18440654-18440901(+) (11)	NA	O48818	Expansin-A4	AT2G39700.1	expansin A4 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114411.1.S1_at	A	A1TS	POPTR_0012s10810	POPTR_0012s10810 (11)	scaffold_12:11522329-11523079(+) (11)	NA	NA	NA	AT1G53200.1	unknown protein; Has 21 Blast hits to 21 proteins in 9 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g13570.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114412.1.A1_s_at	A	A1TS	POPTR_0001s33470	POPTR_0001s33470 (11)	scaffold_1:31674838-31674960(-) (11)	NA	Q9LSD5	Transcription factor TCP20	AT3G27010.1	"TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 "	LOC_Os01g69980.1	"TCP family transcription factor, putative, expressed"	Medtr7g018180.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11443.1.S1_a_at	A	A2TS	POPTR_0008s06000	POPTR_0008s06000 (11)//POPTR_0010s20670 (11)	scaffold_10:18162448-18163557(-) (11)//scaffold_8:3533173-3534549(+) (11)	NA	A0JMG1	Speckle-type POZ protein-like B	AT2G39760.1	BTB/POZ/MATH-domains containing protein 	LOC_Os07g01140.1	"MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.11443.1.S1_at	A	A1TS	POPTR_0008s06000	POPTR_0008s06000 (11)	scaffold_8:3533124-3534669(+) (11)	NA	A0JMG1	Speckle-type POZ protein-like B	AT2G39760.1	BTB/POZ/MATH-domains containing protein 	LOC_Os07g01140.1	"MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.11443.2.A1_at	A	A1TS	POPTR_0010s20670	POPTR_0010s20670 (11)	scaffold_10:18162192-18162521(-) (11)	NA	Q6IQ16	Speckle-type POZ protein-like	AT2G39760.1	BTB/POZ/MATH-domains containing protein 	LOC_Os07g01140.1	"MBTB12 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.114435.1.A1_at	A	A2TS	POPTR_0010s20250	POPTR_0010s20250 (10)//POPTR_0010s20270 (10)	scaffold_10:17920942-17921078(-) (10)//scaffold_10:17931147-17931296(-) (11)	NA	Q9FIA0	Cytokinin-N-glucosyltransferase 2	AT3G11340.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g60960.1	"cytokinin-N-glucosyltransferase 1, putative, expressed"	Medtr3g092670.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114442.1.A1_at	A	A1TS	POPTR_0011s05230	POPTR_0011s05230 (10)	scaffold_11:5100099-5101238(-) (10)	NA	NA	NA	AT4G21700.1	Protein of unknown function (DUF2921) 	LOC_Os05g48370.1	expressed protein	Medtr2g017240.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114469.1.A1_at	A	A1MS	POPTR_0019s03530	POPTR_0019s03530 (11)	scaffold_19:3613444-3614080(+) (11)	NA	O07051	L-allo-threonine aldolase	AT1G08630.4	threonine aldolase 1 	LOC_Os04g43650.2	"L-allo-threonine aldolase, putative, expressed"	Medtr1g093690.1	"Aromatic amino acid beta-eliminating lyase/threonine aldolase; Polynucleotidyl transferase, Ribonuclease H fold; ; "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity	NA
PtpAffx.114479.1.S1_at	A	A1TS	POPTR_0002s12450	POPTR_0002s12450 (11)	scaffold_2:9235810-9236364(-) (11)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.114482.1.A1_at	A	A1TS	POPTR_0005s16130	POPTR_0005s16130 (9)	scaffold_5:12782941-12783912(+) (9)	NA	Q8L751	Oxysterol-binding protein-related protein 1C	AT4G08180.1	OSBP(oxysterol binding protein)-related protein 1C 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.114484.1.A1_at	A	A3MS	POPTR_0004s08410	POPTR_0004s08410 (11)//POPTR_0021s00550 (10)//POPTR_0004s12160 (10)	scaffold_21:249586-249970(+) (10)//scaffold_4:6958012-6958470(+) (11)//scaffold_4:11077492-11077876(-) (10)	NA	Q96D46	60S ribosomal export protein NMD3	AT2G03820.1	nonsense-mediated mRNA decay NMD3 family protein 	LOC_Os10g42320.1	"nonsense-mediated mRNA decay protein 3, putative, expressed"	Medtr3g087050.1	NMD3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114487.1.A1_a_at	A	A1TS	POPTR_0013s10060	POPTR_0013s10060 (11)	scaffold_13:10042165-10042214(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g07380.1	OsFBX188 - F-box domain containing protein	Medtr4g096100.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114487.1.A1_at	A	A1TS	POPTR_0013s10060	POPTR_0013s10060 (11)	scaffold_13:10041649-10042148(+) (11)	NA	NA	NA	NA	NA	LOC_Os06g07380.1	OsFBX188 - F-box domain containing protein	Medtr4g096100.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114501.1.A1_at	A	A1TS	POPTR_0010s09620	POPTR_0010s09620 (11)	scaffold_10:10365533-10366046(-) (11)	NA	O23337	Pentatricopeptide repeat-containing protein At4g14820	AT4G14820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os01g08120.1	"pentatricopeptide, putative, expressed"	Medtr5g006540.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114510.1.A1_at	A	A1TS	POPTR_0005s04670	POPTR_0005s04670 (11)	scaffold_5:3133711-3134680(+) (11)	NA	P56287	Probable translation initiation factor eIF-2B subunit epsilon	AT2G34970.1	Trimeric LpxA-like enzyme 	LOC_Os02g56740.1	"translation initiation factor eIF-2B subunit epsilon, putative, expressed"	Medtr6g025610.1	eIF4-gamma/eIF5/eIF2-epsilon 	NA	GO:0016740|transferase activity	NA
PtpAffx.114520.1.A1_at	A	A1MS	POPTR_0018s14010	POPTR_0018s14010 (11)	scaffold_18:14263008-14263175(-) (11)	NA	Q9LUL5	Pentatricopeptide repeat-containing protein At3g14330	AT3G14330.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g30710.1	"pentatricopeptide, putative, expressed"	Medtr8g029460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114526.1.A1_at	A	A1TS	POPTR_0010s23450	POPTR_0010s23450 (11)	scaffold_10:20031324-20032632(-) (11)	NA	NA	NA	AT3G54880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 137 Blast hits to 137 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os07g29640.3	expressed protein	Medtr4g005450.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114531.1.A1_at	A	A1TS	POPTR_0006s26340	POPTR_0006s26340 (11)	scaffold_6:24568415-24570117(-) (11)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.114531.1.A1_s_at	A	A1TS	POPTR_0006s26340	POPTR_0006s26340 (11)	scaffold_6:24567860-24568426(-) (11)	NA	Q147G5	Cyclin-A2-2	AT5G11300.1	mitotic-like cyclin 3B from Arabidopsis 	LOC_Os12g31810.1	"cyclin, putative, expressed"	Medtr3g136180.1	"Cyclin, N-terminal; ; "	NA	NA	GO:0005634|nucleus
PtpAffx.114535.1.A1_at	A	A1MS	POPTR_0008s00680	POPTR_0008s00680 (10)	scaffold_8:314433-314972(+) (10)	NA	Q9LK31	Kelch repeat-containing protein At3g27220	AT1G51540.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g41020.1	"kelch repeat protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114543.1.A1_at	A	A1TS	POPTR_0008s22660	POPTR_0008s22660 (10)	scaffold_8:17341940-17342564(+) (10)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr8g139200.1	DIRP; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114549.1.A1_a_at	A	A1TS	POPTR_0004s07060	POPTR_0004s07060 (11)	scaffold_4:5870227-5870692(-) (11)	NA	NA	NA	AT5G62650.1	Tic22-like family protein 	LOC_Os01g12550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114552.1.A1_at	A	A1TS	POPTR_0012s07990	POPTR_0012s07990 (11)	scaffold_12:8970033-8970327(-) (11)	NA	Q9LRA7	"Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9"	AT1G23870.1	trehalose-phosphatase/synthase 9 	LOC_Os08g31980.1	"trehalose-6-phosphate synthase, putative, expressed"	Medtr4g110050.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.114564.1.A1_a_at	A	A1TS	POPTR_0008s16500	POPTR_0008s16500 (11)	scaffold_8:11075802-11076304(-) (11)	NA	NA	NA	AT1G04340.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114565.1.A1_at	A	A1TS	POPTR_0003s22250	POPTR_0003s22250 (11)	scaffold_3:20091526-20092024(-) (11)	NA	NA	NA	AT4G12070.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g48640.1	expressed protein	Medtr2g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114578.1.A1_at	A	A1TS	POPTR_0005s16080	POPTR_0005s16080 (11)	scaffold_5:12742231-12742714(+) (11)	NA	O94235	Serine/threonine-protein kinase mph1	AT1G77720.1	putative protein kinase 1 	LOC_Os03g49750.1	"protein kinase family protein, putative, expressed"	Medtr3g098080.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11459.1.A1_at	A	A1TS	POPTR_0014s02480	POPTR_0014s02480 (11)	scaffold_14:2074126-2074176(+) (11)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.11459.2.A1_at	A	A1TS	POPTR_0014s02500	POPTR_0014s02500 (11)	scaffold_14:2078722-2078759(+) (11)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.114620.1.A1_at	A	A1TS	POPTR_0002s25880	POPTR_0002s25880 (9)	scaffold_2:22893256-22893294(-) (9)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.114622.1.A1_at	A	A1TS	POPTR_0014s10760	POPTR_0014s10760 (11)	scaffold_14:8049673-8050168(+) (11)	NA	Q9M115	Probable S-acyltransferase At4g01730	AT4G01730.1	DHHC-type zinc finger family protein 	LOC_Os12g16210.1	"zinc finger family protein, putative, expressed"	Medtr1g105750.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.114653.1.A1_at	A	A1MS	POPTR_0017s04240	POPTR_0017s04240 (11)	scaffold_17:3271702-3271976(+) (11)	NA	Q6YXY2	Probable histone acetyltransferase HAC-like 1	AT1G05690.1	BTB and TAZ domain protein 3 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr5g015750.1	"Zinc finger, TAZ-type; BTB/POZ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.114663.1.A1_at	A	A1TS	POPTR_0004s20150	POPTR_0004s20150 (11)	scaffold_4:19795709-19796564(+) (11)	NA	NA	NA	AT1G08390.1	unknown protein; Has 62 Blast hits to 62 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g47990.1	"OB-fold nucleic acid binding domain containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.114669.1.A1_at	A	A1TS	POPTR_0016s07250	POPTR_0016s07250 (11)	scaffold_16:5089243-5090253(-) (11)	NA	P42730	Heat shock protein 101	AT3G52490.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g33980.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr1g112350.1	"Immunoglobulin/major histocompatibility complex; Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114670.1.A1_at	A	A1MS	POPTR_0001s34470	POPTR_0001s34470 (11)	scaffold_1:32588586-32589547(-) (11)	NA	Q940S5	Coatomer subunit zeta-1	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.11468.1.A1_at	A	A1TS	POPTR_0009s03180	POPTR_0009s03180 (9)	scaffold_9:3852645-3852966(-) (9)	NA	Q8VYR2	Nudix hydrolase 9	AT3G46200.1	nudix hydrolase homolog 9 	LOC_Os05g02640.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr4g079320.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.114682.1.S1_s_at	A	A1TS	POPTR_0010s25630	POPTR_0010s25630 (11)	scaffold_10:21221993-21222906(-) (11)	NA	Q54VZ8	Exocyst complex component 8	AT5G49830.1	exocyst complex component 84B 	LOC_Os07g10110.1	expressed protein	Medtr4g023160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114694.1.A1_at	A	A1TS	POPTR_0017s11120	POPTR_0017s11120 (11)	scaffold_17:10795252-10795687(+) (11)	NA	NA	NA	AT1G59650.1	Protein of unknown function (DUF1336) 	LOC_Os03g48660.1	"DUF1336 domain containing protein, expressed"	Medtr5g038290.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114697.1.A1_at	A	A1TS	POPTR_0015s15450	POPTR_0015s15450 (11)	scaffold_15:14719561-14720150(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1147.1.A1_at	A	A1TS	POPTR_0001s37020	POPTR_0001s37020 (11)	scaffold_1:35840114-35841027(-) (11)	NA	Q42545	"Cell division protein ftsZ homolog, chloroplastic"	AT5G55280.1	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 	LOC_Os04g56970.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr5g101550.1	"Tubulin/FtsZ, C-terminal "	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.1147.2.A1_a_at	A	A1TS	POPTR_0001s37020	POPTR_0001s37020 (11)	scaffold_1:35842795-35843501(-) (11)	NA	Q42545	"Cell division protein ftsZ homolog, chloroplastic"	AT5G55280.1	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 	LOC_Os04g56970.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr5g101550.1	"Tubulin/FtsZ, C-terminal "	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.1147.2.A1_at	A	A1MS	POPTR_0001s37020	POPTR_0001s37020 (9)	scaffold_1:35842883-35843108(-) (9)	NA	Q42545	"Cell division protein ftsZ homolog, chloroplastic"	AT5G55280.1	homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 	LOC_Os04g56970.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr5g101550.1	"Tubulin/FtsZ, C-terminal "	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.114724.1.A1_at	A	A1TS	POPTR_0004s09470	POPTR_0004s09470 (11)	scaffold_4:8002218-8002449(+) (11)	NA	NA	NA	AT5G16220.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os01g04650.1	"PB1 domain containing protein, expressed"	Medtr8g096190.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114727.2.A1_s_at	A	A1TS	POPTR_0005s20980	POPTR_0005s20980 (11)	scaffold_5:20100773-20101173(-) (11)	NA	Q3E7Q9	Probable glycosyltransferase At5g25310	AT1G21480.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr4g159530.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.114732.2.A1_a_at	A	A1TS	POPTR_0014s17970	POPTR_0014s17970 (11)	scaffold_14:14566600-14566971(+) (11)	NA	NA	NA	AT1G76065.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os02g44704.2	"LYR motif containing protein, putative, expressed"	Medtr1g032040.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114735.1.A1_at	A	A1TS	POPTR_0007s05020	POPTR_0007s05020 (11)	scaffold_7:3222824-3223315(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114743.2.A1_a_at	A	A1TS	POPTR_0008s06680	POPTR_0008s06680 (11)	scaffold_8:3997315-3998459(-) (11)	POPTR_0010s19760 (6)	NA	NA	AT2G40070.1	BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g04880.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g093370.1	"En/Spm-like transposon protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114748.1.A1_at	A	A1TS	POPTR_0002s26290	POPTR_0002s26290 (10)	scaffold_2:23265770-23266738(+) (10)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT2G16230.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g095460.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.11475.1.A1_at	A	A1TS	POPTR_0003s14080	POPTR_0003s14080 (11)	scaffold_3:14263806-14264851(+) (11)	NA	O65781	UDP-glucose 4-epimerase GEPI48	AT4G10960.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 5 	LOC_Os05g51670.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.11475.2.A1_s_at	A	A1TS	POPTR_0001s10700	POPTR_0001s10700 (11)	scaffold_1:8321124-8321658(+) (11)	NA	O65781	UDP-glucose 4-epimerase GEPI48	AT4G10960.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 5 	LOC_Os05g51670.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.114758.1.A1_at	A	A1MS	POPTR_0001s21330	POPTR_0001s21330 (11)	scaffold_1:19738678-19738893(-) (11)	NA	NA	NA	AT5G09390.1	CD2-binding protein-related 	LOC_Os09g20590.1	"CD2-binding protein-related, putative, expressed"	Medtr2g008850.1	"CD2-binding protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114758.2.A1_at	A	A1TS	POPTR_0001s21330	POPTR_0001s21330 (11)	scaffold_1:19739275-19739726(-) (11)	NA	NA	NA	AT5G09390.1	CD2-binding protein-related 	LOC_Os09g20590.1	"CD2-binding protein-related, putative, expressed"	Medtr2g008850.1	"CD2-binding protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11476.1.S1_at	A	A1TS	POPTR_0010s20590	POPTR_0010s20590 (11)	scaffold_10:18116581-18117815(+) (11)	NA	O04015	Delta-1-pyrroline-5-carboxylate synthase	AT3G55610.1	delta 1-pyrroline-5-carboxylate synthase 2 	LOC_Os05g38150.2	"amino acid kinase, putative, expressed"	Medtr3g092110.1	Gamma-glutamyl phosphate reductase GPR; Glutamate 5-kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.114761.1.A1_at	A	A1MS	POPTR_0009s15340	POPTR_0009s15340 (11)	scaffold_9:11893281-11893706(+) (11)	NA	Q058N4	"Magnesium transporter MRS2-11, chloroplastic"	AT5G22830.1	magnesium (Mg) transporter 10 	LOC_Os03g48000.1	"CorA-like magnesium transporter protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114764.1.A1_at	A	A1TS	POPTR_0005s05910	POPTR_0005s05910 (11)	scaffold_5:3884488-3884949(-) (11)	NA	Q8LGD5	Protein MKS1	AT3G18690.1	MAP kinase substrate 1 	LOC_Os08g01260.1	"VQ domain containing protein, putative"	Medtr4g142470.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114776.1.A1_at	A	A1TS	POPTR_0010s02910	POPTR_0010s02910 (11)	scaffold_10:3380226-3380585(-) (11)	NA	Q7XJ53	Probable protein phosphatase 2C 35	AT3G06270.1	Protein phosphatase 2C family protein 	LOC_Os02g17970.1	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g026070.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11478.1.S1_s_at	A	A1TS	POPTR_0010s26210	POPTR_0010s26210 (11)	scaffold_10:21522339-21522666(-) (11)	NA	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.11478.2.S1_at	A	A1TS	POPTR_0008s00270	POPTR_0008s00270 (11)	scaffold_8:57763-58195(+) (11)	NA	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.114780.1.A1_at	A	A1TS	POPTR_0002s11370	POPTR_0002s11370 (11)	scaffold_2:8408016-8408391(+) (11)	NA	P36917	"Endo-1,4-beta-xylanase A"	AT1G58370.1	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein 	LOC_Os07g27320.1	"glycosyl hydrolase family 10 protein, putative, expressed"	Medtr3g163350.1	"Glycoside hydrolase, family 10; Galactose-binding like "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.114784.1.A1_at	A	A1TS	POPTR_0008s23150	POPTR_0008s23150 (11)	scaffold_8:18409424-18409662(+) (11)	NA	Q94AJ5	Probable polygalacturonase At1g80170	AT1G23460.1	Pectin lyase-like superfamily protein 	LOC_Os02g03750.1	"polygalacturonase, putative, expressed"	Medtr1g106120.1	"Ribosome-binding factor A; Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.114790.1.A1_at	A	A1MS	POPTR_0004s08750	POPTR_0004s08750 (11)	scaffold_4:7331390-7331722(-) (11)	NA	Q5XEZ8	U-box domain-containing protein 2	AT3G03440.1	ARM repeat superfamily protein 	LOC_Os01g02200.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr5g087030.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114792.1.A1_at	A	A1MS	POPTR_0001s00970	POPTR_0001s00970 (11)	scaffold_1:781820-781882(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140400.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.114792.1.A1_s_at	A	A1TS	POPTR_0001s00970	POPTR_0001s00970 (11)	scaffold_1:781905-782217(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140400.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.1148.1.S1_a_at	A	A1TS	POPTR_0017s08810	POPTR_0017s08810 (11)	scaffold_17:7386626-7387696(-) (11)	NA	Q9SDS7	V-type proton ATPase subunit C	AT1G12840.1	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) 	LOC_Os05g51530.2	"vacuolar ATP synthase subunit C, putative, expressed"	Medtr7g096730.1	V-ATPase subunit C 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	"GO:0033180|""proton-transporting V-type ATPase, V1 domain"""
PtpAffx.11482.2.A1_a_at	A	A1TS	POPTR_0019s08050	POPTR_0019s08050 (11)	scaffold_19:9402694-9403371(-) (11)	NA	NA	NA	AT5G16490.1	ROP-interactive CRIB motif-containing protein 4 	LOC_Os03g63060.1	"P21-Rho-binding domain containing protein, putative, expressed"	Medtr7g021460.1	PAK-box/P21-Rho-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114827.1.A1_at	A	A1TS	POPTR_0030s00320	POPTR_0030s00320 (11)	scaffold_30:99677-100540(-) (11)	NA	Q3T090	Pre-rRNA-processing protein TSR2 homolog	AT5G27990.1	"Pre-rRNA-processing protein TSR2, conserved region "	LOC_Os08g39820.1	"pre-rRNA-processing protein TSR2, putative, expressed"	Medtr8g047520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11483.1.A1_at	A	A1TS	POPTR_0005s08950	POPTR_0005s08950 (11)	scaffold_5:6274857-6275107(-) (11)	NA	Q9SJ20	Ribonucleoside-diphosphate reductase large subunit	AT2G21790.1	ribonucleotide reductase 1 	LOC_Os06g07210.1	"ribonucleoside-diphosphate reductase large subunit, putative, expressed"	Medtr4g141590.1	"Ribonucleotide reductase R1 subunit, N-terminal; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication||GO:0055114|oxidation reduction	GO:0005524|ATP binding||GO:0004748|ribonucleoside-diphosphate reductase activity	GO:0005971|ribonucleoside-diphosphate reductase complex
PtpAffx.114834.1.A1_at	A	A1TS	POPTR_0014s12730	POPTR_0014s12730 (11)	scaffold_14:9366686-9367214(-) (11)	NA	Q38796	Homeobox protein LUMINIDEPENDENS	AT4G02560.2	Homeodomain-like superfamily protein 	LOC_Os01g70810.1	"homeobox domain containing protein, expressed"	Medtr7g130110.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114836.1.A1_at	A	A1TS	POPTR_0014s16180	POPTR_0014s16180 (11)	scaffold_14:12295145-12295649(+) (11)	NA	Q9LNG5	Serine/threonine-protein phosphatase 7 long form homolog	AT2G04865.1	"Aminotransferase-like, plant mobile domain family protein "	LOC_Os07g32412.2	"transposon protein, putative, unclassified, expressed"	Medtr6g080620.1	"Serine/threonine protein phosphatase 7 long form homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114845.1.A1_at	A	A1TS	POPTR_0006s22750	POPTR_0006s22750 (10)	scaffold_6:21674616-21675075(+) (10)	NA	NA	NA	AT3G52610.1	unknown protein; Has 68 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g64256.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr7g127740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114847.1.A1_at	A	A1TS	POPTR_0001s28820	POPTR_0001s28820 (11)	scaffold_1:27609388-27610907(-) (11)	NA	NA	NA	AT3G14750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). 	LOC_Os03g60360.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr5g080930.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114848.1.A1_at	A	A1TS	POPTR_0010s14520	POPTR_0010s14520 (11)	scaffold_10:14088389-14088951(-) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT1G26230.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.11485.3.A1_x_at	A	A1TS	POPTR_0019s08500	POPTR_0019s08500 (11)	scaffold_19:10020192-10021615(-) (11)	NA	P49206	40S ribosomal protein S26-1	AT2G40590.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.1	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.11485.4.A1_x_at	A	A1TS	POPTR_0013s09160	POPTR_0013s09160 (11)	scaffold_13:8737174-8738406(+) (11)	NA	P49206	40S ribosomal protein S26-1	AT2G40590.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.1	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.11485.6.A1_x_at	A	A1TS	POPTR_0013s09160	POPTR_0013s09160 (11)	scaffold_13:8737172-8738260(+) (11)	NA	P49206	40S ribosomal protein S26-1	AT2G40590.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.1	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.11485.8.S1_at	A	A1TS	POPTR_0015s11400	POPTR_0015s11400 (11)	scaffold_15:11979282-11979769(+) (11)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os01g70100.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.11485.9.A1_at	A	A1MS	POPTR_0013s09160	POPTR_0013s09160 (11)	scaffold_13:8737220-8737298(+) (11)	NA	P49206	40S ribosomal protein S26-1	AT2G40590.1	Ribosomal protein S26e family protein 	LOC_Os05g39960.1	"40S ribosomal protein S26, putative, expressed"	Medtr5g104880.1	Ribosomal protein S26E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.114850.1.A1_at	A	A1TS	POPTR_0006s27990	POPTR_0006s27990 (11)	scaffold_6:25862349-25862743(+) (11)	NA	P59583	Probable WRKY transcription factor 32	AT4G30935.1	WRKY DNA-binding protein 32 	LOC_Os08g17400.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr8g145380.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.114861.1.A1_s_at	A	A1TS	POPTR_0015s01110	POPTR_0015s01110 (11)	scaffold_15:679858-680331(+) (11)	NA	Q7YR39	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	AT1G32490.1	RNA helicase family protein 	LOC_Os08g24760.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.114876.1.A1_at	A	A1MS	POPTR_0004s04380	POPTR_0004s04380 (11)	scaffold_4:3137959-3139161(+) (11)//scaffold_4:3138036-3138113(+) (9)	NA	Q9M0Y8	Vesicle-fusing ATPase	AT4G04910.1	AAA-type ATPase family protein 	LOC_Os05g44310.1	"vesicle-fusing ATPase, putative, expressed"	AC233659_3.1	AAA ATPase AC233659.1 11110-14927 E EGN_Mt090430 200	NA	GO:0005524|ATP binding	NA
PtpAffx.114878.1.A1_at	A	A1TS	POPTR_0018s10830	POPTR_0018s10830 (11)	scaffold_18:11705774-11705982(-) (11)	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os09g25850.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.114878.1.A1_s_at	A	A1TS	POPTR_0018s10830	POPTR_0018s10830 (11)	scaffold_18:11705821-11706569(-) (11)	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os09g25850.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.11488.1.S1_at	A	A1TS	POPTR_0018s03160	POPTR_0018s03160 (11)	scaffold_18:2802516-2804543(+) (11)	NA	Q8K0H5	Transcription initiation factor TFIID subunit 10	AT4G31720.1	TBP-associated factor II 15 	LOC_Os09g26180.1	"transcription initiation factor TFIID subunit 10, putative, expressed"	Medtr7g092270.1	"Transcription initiation factor TFIID, 23-30 kDa subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity	GO:0005634|nucleus
PtpAffx.114887.1.S1_at	A	A1TS	POPTR_0007s14270	POPTR_0007s14270 (11)	scaffold_7:14109794-14112585(+) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT5G10490.1	MSCS-like 2 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.1149.1.A1_s_at	A	A1TS	POPTR_0017s01180	POPTR_0017s01180 (11)	scaffold_17:841295-841465(-) (11)	NA	Q9LSJ3	Putative F-box/LRR-repeat protein At3g28410	AT3G28410.1	F-box/RNI-like superfamily protein 	NA	NA	Medtr8g021310.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114905.1.A1_at	A	A1TS	POPTR_0013s05610	POPTR_0013s05610 (11)	scaffold_13:4008324-4008858(+) (11)	NA	P69781	GATA transcription factor 12	AT5G25830.1	GATA transcription factor 12 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr7g100310.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.11491.1.S1_a_at	A	A2TS	POPTR_0004s06160	POPTR_0011s06770 (11)//POPTR_0004s06160 (11)	scaffold_11:7425751-7425841(-) (11)//scaffold_4:4880778-4880868(+) (11)	NA	Q8LFP7	Aquaporin NIP1-2	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr2g021470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.11491.1.S1_at	A	A1TS	POPTR_0004s06160	POPTR_0004s06160 (11)	scaffold_4:4880331-4881737(+) (11)	NA	Q8LFP7	Aquaporin NIP1-2	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr2g021470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.11491.2.A1_a_at	A	A1TS	POPTR_0011s06770	POPTR_0011s06770 (11)	scaffold_11:7425312-7425465(-) (11)	NA	Q8LFP7	Aquaporin NIP1-2	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr4g136200.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.11491.2.A1_at	A	A1TS	POPTR_0011s06770	POPTR_0011s06770 (10)	scaffold_11:7424947-7425278(-) (10)	NA	Q8LFP7	Aquaporin NIP1-2	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr4g136200.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.114924.1.A1_s_at	A	A1TS	POPTR_0002s10110	POPTR_0002s10110 (11)	scaffold_2:7273549-7274294(+) (11)	NA	Q9M0S5	"Isoamylase 3, chloroplastic"	AT4G09020.1	isoamylase 3 	LOC_Os09g29404.3	"glycogen operon protein glgX, putative, expressed"	Medtr3g150300.1	"Alpha amylase, catalytic region; Pullulanase, type I; ; ; "	GO:0005975|carbohydrate metabolic process	"GO:0043169|cation binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.114927.1.A1_at	A	A1TS	POPTR_0001s14660	POPTR_0001s14660 (11)	scaffold_1:11544718-11544838(-) (11)	POPTR_0001s14620 (6)	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.11493.1.S1_at	A	A1TS	POPTR_0019s03180	POPTR_0019s03180 (10)	scaffold_19:3194884-3195336(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114932.1.A1_at	A	A1TS	POPTR_0014s07590	POPTR_0014s07590 (11)	scaffold_14:5703260-5703750(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034860.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.114932.2.S1_at	A	A1TS	POPTR_0002s15770	POPTR_0002s15770 (9)	scaffold_2:11763628-11764172(+) (9)//scaffold_2:11777594-11788322(+) (9)	POPTR_0002s15820 (6)	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034860.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.114935.1.A1_at	A	A2TS	POPTR_0009s03970	POPTR_0009s03970 (11)//POPTR_1357s00200 (10)	scaffold_1357:1429-1812(-) (10)//scaffold_9:4544375-4544751(-) (11)	NA	P0CH30	E3 ubiquitin-protein ligase RING1	AT3G46620.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01940.1	"zinc finger, RING-type, putative, expressed"	Medtr4g084220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11494.1.S1_at	A	A1TS	POPTR_0001s22600	POPTR_0001s22600 (11)	scaffold_1:21500624-21501093(-) (11)	NA	NA	NA	AT3G44380.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os08g44410.1	"harpin-induced protein 1 domain containing protein, expressed"	NA	NA	GO:0009269|response to desiccation	NA	NA
PtpAffx.11499.1.A1_s_at	A	A1TS	POPTR_0003s00910	POPTR_0003s00910 (11)	scaffold_3:736547-736793(+) (11)	NA	NA	NA	AT4G24265.1	unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11499.2.A1_at	A	A1TA	POPTR_0003s00910	POPTR_0003s00910 (9)	scaffold_3:736412-736942(-) (11)	NA	NA	NA	AT4G24265.1	unknown protein; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11499.3.A1_at	A	A1TS	POPTR_0014s09970	POPTR_0014s09970 (11)	scaffold_14:7475596-7476104(-) (11)	NA	Q91XJ0	Calcium-responsive transcription coactivator	AT4G00850.1	GRF1-interacting factor 3 	LOC_Os12g31350.1	"SSXT protein, putative, expressed"	Medtr1g094100.1	SSXT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11499.5.A1_at	A	A1MS	POPTR_0014s09970	POPTR_0014s09970 (9)	scaffold_14:7476327-7476819(-) (9)	NA	Q91XJ0	Calcium-responsive transcription coactivator	AT4G00850.1	GRF1-interacting factor 3 	LOC_Os12g31350.1	"SSXT protein, putative, expressed"	Medtr1g094100.1	SSXT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114990.1.A1_at	A	A1TS	POPTR_0005s28020	POPTR_0005s28020 (11)	scaffold_5:25423357-25423822(-) (11)	NA	NA	NA	AT1G20990.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os09g31980.1	"DC1 domain-containing protein, putative"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.114999.1.A1_at	A	A1TS	POPTR_0003s09150	POPTR_0003s09150 (10)	scaffold_3:10468148-10468646(-) (11)	NA	NA	NA	AT1G32690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35200.1); Has 45 Blast hits to 45 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g030040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1150.1.A1_s_at	A	A1TS	POPTR_0002s09330	POPTR_0002s09330 (11)	scaffold_2:6626823-6627295(-) (11)	NA	P78820	Acetyl-CoA carboxylase	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
PtpAffx.115001.1.A1_at	A	A1TS	POPTR_0008s19310	POPTR_0008s19310 (11)	scaffold_8:13263612-13263775(-) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.11501.1.A1_at	A	A1TS	POPTR_0016s05260	POPTR_0016s05260 (11)	scaffold_16:3199031-3199266(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115018.1.A1_at	A	A1TS	POPTR_0014s12610	POPTR_0014s12610 (11)	scaffold_14:9289795-9291676(+) (11)	NA	Q92685	Dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase	AT2G47760.1	asparagine-linked glycosylation 3 	LOC_Os01g07720.4	"dolichyl-P-Man Man-PP-dolichyl mannosyltransferase, putative, expressed"	Medtr7g130400.1	ALG3 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.11503.1.S1_at	A	A1TS	POPTR_0007s14290	POPTR_0007s14290 (11)	scaffold_7:14120934-14123059(-) (11)	NA	Q8VZB2	3-hydroxyacyl-CoA dehydratase PASTICCINO 2	AT5G10480.1	"Protein-tyrosine phosphatase-like, PTPLA "	LOC_Os04g20280.2	expressed protein	Medtr4g080360.1	"Protein tyrosine phosphatase-like protein, PTPLA "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115041.1.A1_at	A	A1TS	POPTR_0016s14390	POPTR_0016s14390 (10)	scaffold_16:13619082-13619640(+) (11)	NA	NA	NA	AT3G51580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). 	NA	NA	Medtr7g080400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11505.1.S1_at	A	A1TS	POPTR_0015s13110	POPTR_0015s13110 (11)	scaffold_15:13203045-13203560(+) (11)	NA	NA	NA	AT5G23760.1	Copper transport protein family 	LOC_Os10g36200.1	"heavy metal-associated domain containing protein, expressed"	AC235674_17.1	"heavy-metal-associated domain-containing protein, putative AC235674.1 87926-88304 E EGN_Mt090430 200"	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.115051.1.A1_at	A	A1TS	POPTR_0009s05470	POPTR_0009s05470 (11)	scaffold_9:5574002-5575067(+) (11)	NA	NA	NA	AT1G50450.1	Saccharopine dehydrogenase  	LOC_Os12g04260.1	"astaxanthin synthase KC28, putative"	Medtr4g104000.1	"Peptidase, cysteine peptidase active site; Saccharopine dehydrogenase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115064.1.A1_at	A	A1TS	POPTR_0009s16130	POPTR_0009s16130 (11)	scaffold_9:12334391-12334800(-) (11)	NA	Q40588	L-ascorbate oxidase	AT5G21105.1	Plant L-ascorbate oxidase 	LOC_Os06g37080.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.115086.1.A1_at	A	A1TS	POPTR_0014s07550	POPTR_0014s07550 (11)	scaffold_14:5673200-5674507(+) (11)	NA	Q5R4E0	Methionine adenosyltransferase 2 subunit beta	AT4G00560.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g57990.1	"methionine adenosyltransferase regulatory beta subunit-related, putative, expressed"	Medtr8g034380.1	dTDP-4-dehydrorhamnose reductase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.115091.1.A1_at	A	A1TS	POPTR_0007s04250	POPTR_0007s04250 (10)	scaffold_7:2569549-2570088(-) (10)	NA	O49255	NAC domain-containing protein 29	AT5G64530.1	xylem NAC domain 1 	LOC_Os02g34970.1	"no apical meristem protein, putative, expressed"	Medtr4g142900.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.115098.1.A1_at	A	A1TS	POPTR_0002s06950	POPTR_0002s06950 (11)	scaffold_2:4692349-4692994(-) (11)	NA	Q8S3U9	Exocyst complex component 2	AT1G21170.1	Exocyst complex component SEC5 	LOC_Os04g34450.1	expressed protein	Medtr3g009450.1	"Exocyst complex component 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1151.1.A1_at	A	A1MS	POPTR_0001s47530	POPTR_0001s47530 (9)	scaffold_1:47687390-47687727(+) (10)	NA	P45816	SEC14 cytosolic factor	AT1G55690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os08g25310.1	"phosphatidylinositol transfer, putative, expressed"	Medtr3g016810.1	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115100.1.A1_at	A	A1TS	POPTR_0013s15130	POPTR_0013s15130 (11)	scaffold_13:15178288-15178794(+) (11)	NA	NA	NA	AT2G30395.1	ovate family protein 17 	LOC_Os05g26210.1	"ATOFP17/OFP17, putative"	Medtr5g083020.1	"ATOFP17/OFP17, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115106.1.A1_at	A	A1TS	POPTR_0001s44520	POPTR_0001s44520 (11)	scaffold_1:44912604-44913875(-) (11)	NA	Q9LJU2	Protein disulfide-isomerase 5-3	AT3G20560.1	PDI-like 5-3 	LOC_Os07g34030.1	"OsPDIL5-4  protein disulfide isomerase PDIL5-4, expressed"	Medtr4g110800.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.115107.1.A1_at	A	A1MS	POPTR_0006s04870	POPTR_0006s04870 (10)	scaffold_6:3396139-3396553(-) (10)	NA	O81644	Villin-2	AT2G41740.1	villin 2 	LOC_Os03g24220.1	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
PtpAffx.115109.1.A1_at	A	A1TS	POPTR_0010s01790	POPTR_0010s01790 (11)	scaffold_10:1963283-1963760(+) (11)	NA	Q6A070	Protein FAM179B	AT4G15830.1	ARM repeat superfamily protein 	LOC_Os01g70560.1	expressed protein	AC233671_13.1	HEAT AC233671.1 49391-46699 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11511.1.S1_at	A	A1TS	POPTR_0003s14640	POPTR_0003s14640 (11)	scaffold_3:14660775-14661155(+) (11)	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11511.2.S1_s_at	A	A1TS	POPTR_0001s11330	POPTR_0001s11330 (11)	scaffold_1:8771659-8771922(+) (11)	NA	NA	NA	AT4G24130.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115113.1.A1_at	A	A1MA	POPTR_0006s10590	POPTR_0006s10590 (11)	scaffold_6:7923703-7924153(+) (11)	NA	NA	NA	AT5G01710.1	methyltransferases 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115115.1.A1_at	A	A1TS	POPTR_0016s06240	POPTR_0016s06240 (11)	scaffold_16:4181669-4182374(-) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT1G55310.2	SC35-like splicing factor 33 	LOC_Os03g25770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.11512.2.A1_a_at	A	A1TS	POPTR_0010s07460	POPTR_0010s07460 (11)	scaffold_10:8515708-8515954(+) (11)	NA	NA	NA	AT5G05210.1	Surfeit locus protein 6 	LOC_Os05g30880.1	"nucleolar matrix protein-related, putative, expressed"	Medtr5g012880.2	Surfeit locus 6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11512.3.A1_at	A	A1TS	POPTR_0008s17340	POPTR_0008s17340 (11)	scaffold_8:11632629-11633076(-) (11)	NA	NA	NA	AT5G05210.1	Surfeit locus protein 6 	LOC_Os05g30880.1	"nucleolar matrix protein-related, putative, expressed"	Medtr5g012880.2	Surfeit locus 6 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115135.1.A1_at	A	A1TS	POPTR_0008s03870	POPTR_0008s03870 (11)	scaffold_8:2108404-2108921(+) (11)	NA	NA	NA	AT3G54800.2	Pleckstrin homology (PH) and lipid-binding START domains-containing protein 	LOC_Os10g33930.1	"DUF1336 domain containing protein, expressed"	Medtr1g120740.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115136.1.A1_at	A	A1MA	POPTR_0014s09430	POPTR_0014s09430 (11)	scaffold_14:7010255-7010775(+) (11)	NA	NA	NA	AT2G45360.1	Protein of unknown function (DUF1442) 	LOC_Os08g01910.1	expressed protein	Medtr6g069960.1	Protein of unknown function DUF1442 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115137.1.A1_at	A	A1TS	POPTR_0013s11780	POPTR_0013s11780 (9)	scaffold_13:12428738-12428885(-) (9)	NA	NA	NA	AT4G09620.1	Mitochondrial transcription termination factor family protein 	LOC_Os03g62240.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11514.1.A1_a_at	A	A1TS	POPTR_0002s07610	POPTR_0002s07610 (11)	scaffold_2:5205970-5206389(+) (11)	NA	Q68FJ8	TOM1-like protein 2	AT1G21380.1	Target of Myb protein 1 	LOC_Os11g09329.1	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.115155.1.S1_at	A	A1TS	POPTR_0003s13160	POPTR_0003s13160 (9)	scaffold_3:13568469-13568843(+) (9)	NA	A7PZL3	Probable polygalacturonase	AT3G61490.3	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.115155.2.S1_a_at	A	A1TS	POPTR_0001s09790	POPTR_0001s09790 (11)	scaffold_1:7532588-7533477(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT4G23500.1	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.115155.2.S1_at	A	A1TS	POPTR_0001s09790	POPTR_0001s09790 (10)	scaffold_1:7533482-7534206(+) (10)	NA	A7PZL3	Probable polygalacturonase	AT4G23500.1	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.11516.1.A1_s_at	A	A1TS	POPTR_0001s11010	POPTR_0001s11010 (11)	scaffold_1:8540424-8540842(+) (11)	NA	Q03685	Luminal-binding protein 5	AT5G42020.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11516.2.A1_at	A	A1TS	POPTR_0003s14360	POPTR_0003s14360 (11)	scaffold_3:14451483-14451597(+) (11)	NA	Q03685	Luminal-binding protein 5	AT5G42020.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115160.1.A1_at	A	A1TS	POPTR_0014s07270	POPTR_0014s07270 (9)	scaffold_14:5492312-5492672(-) (9)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.115164.1.A1_at	A	A1TS	POPTR_0019s11040	POPTR_0019s11040 (9)	scaffold_19:12460358-12460533(+) (9)	NA	Q8VHT8	Transcription factor IIIA	AT1G72050.2	transcription factor IIIA 	LOC_Os02g02424.1	"ZOS2-02 - C2H2 zinc finger protein, expressed"	Medtr3g005750.1	"Zinc finger, C2H2-type; "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11517.1.S1_at	A	A1TS	POPTR_0006s19180	POPTR_0006s19180 (11)	scaffold_6:18162573-18164146(-) (11)	NA	NA	NA	AT2G23810.1	tetraspanin8 	LOC_Os09g25760.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.115171.1.S1_at	A	A1TS	POPTR_0009s17080	POPTR_0009s17080 (11)	scaffold_9:12860674-12862194(+) (11)	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT4G38200.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g106900.1	"Protein of unknown function DUF1981, SEC7 associated "	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.115182.1.S1_at	A	A1TS	POPTR_0002s19860	POPTR_0002s19860 (9)	scaffold_2:15794380-15796326(+) (9)	NA	NA	NA	AT4G34140.3	D111/G-patch domain-containing protein 	LOC_Os01g07540.1	"G-patch domain containing protein, expressed"	Medtr3g114530.1	D111/G-patch 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.115188.1.A1_at	A	A1TS	POPTR_0644s00210	POPTR_0644s00210 (11)	scaffold_644:7075-7842(+) (11)	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os07g14580.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11519.1.A1_at	A	A1TS	POPTR_0010s00950	POPTR_0010s00950 (9)	scaffold_10:700355-700583(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115191.1.A1_at	A	A1TS	POPTR_0003s14040	POPTR_0003s14040 (10)	scaffold_3:14234834-14236030(+) (10)	NA	NA	NA	AT4G23895.2	Pleckstrin homology (PH) domain-containing protein 	LOC_Os05g51710.1	"pleckstrin homology domain-containing protein-related taxo, putative, expressed"	Medtr5g009340.1	"pleckstrin homology domain-containing protein-related taxo, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1152.2.A1_s_at	A	A1TS	POPTR_0006s10320	POPTR_0006s10320 (11)	scaffold_6:7733997-7734713(+) (11)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.1152.4.S1_at	A	A1TS	POPTR_0016s12720	POPTR_0016s12720 (10)	scaffold_16:12098902-12099001(+) (10)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.115220.1.S1_s_at	A	A1TS	POPTR_0002s25890	POPTR_0002s25890 (11)	scaffold_2:22898875-22900243(-) (11)	NA	Q4KLU2	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115227.1.A1_at	A	A1TS	POPTR_0001s33230	POPTR_0001s33230 (10)	scaffold_1:31430730-31432097(-) (10)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os04g32370.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g094460.1	"Uncharacterized protein At2g33490, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11523.2.A1_a_at	A	A2TS	POPTR_0005s12990	POPTR_0278s00210 (9)//POPTR_0005s12990 (9)	scaffold_278:30908-32128(-) (9)//scaffold_5:9821379-9822599(-) (9)	NA	Q8W4F0	Protein DA1-related 1	AT4G36860.1	LIM domain-containing protein 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr5g018830.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.115233.1.S1_s_at	A	A1TS	POPTR_0001s05180	POPTR_0001s05180 (11)	scaffold_1:3968699-3969594(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115235.1.A1_at	A	A1TS	POPTR_0014s07400	POPTR_0014s07400 (11)	scaffold_14:5577955-5578548(+) (11)	NA	Q93ZQ5	SPX domain-containing membrane protein At4g22990	AT4G22990.2	Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os02g45520.1	"uncharacterized membrane protein, putative, expressed"	Medtr7g084180.1	"Beta-lactamase, class A; SPX, N-terminal; Major facilitator superfamily MFS_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115238.1.A1_at	A	A1TS	POPTR_0001s32850	POPTR_0001s32850 (11)	scaffold_1:31138132-31138500(-) (11)	NA	NA	NA	AT4G14010.1	ralf-like 32 	NA	NA	Medtr4g132720.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115239.1.A1_at	A	A1TS	POPTR_0005s24900	POPTR_0005s24900 (10)	scaffold_5:23320494-23321236(+) (10)	NA	Q9CXF4	TBC1 domain family member 15	AT4G28550.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os02g56570.1	"TBC domain containing protein, expressed"	Medtr2g097180.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.11524.2.S1_a_at	A	A1TS	POPTR_0012s00920	POPTR_0012s00920 (11)	scaffold_12:589848-592801(-) (11)	NA	P68209	"Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial"	AT5G08300.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11524.3.S1_a_at	A	A2TS	POPTR_0012s00920	POPTR_0012s03310 (11)//POPTR_0012s00920 (11)	scaffold_12:590319-591176(-) (11)//scaffold_12:2629521-2630546(+) (11)	NA	P68209	"Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial"	AT5G08300.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.115254.1.A1_at	A	A1TS	POPTR_0005s07640	POPTR_0005s07640 (11)	scaffold_5:5232082-5232505(+) (11)	NA	O24454	Ubiquitin carboxyl-terminal hydrolase 3	AT4G39910.1	ubiquitin-specific protease 3 	LOC_Os04g37950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr3g101810.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.11527.1.S1_at	A	A1TS	POPTR_0005s20930	POPTR_0005s20930 (11)	scaffold_5:20042230-20042673(-) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT1G43850.2	SEUSS transcriptional co-regulator 	LOC_Os11g10070.1	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115286.1.A1_at	A	A1TS	POPTR_0016s10820	POPTR_0016s10820 (11)	scaffold_16:9184762-9185897(+) (11)	NA	Q99728	BRCA1-associated RING domain protein 1	AT3G09890.1	Ankyrin repeat family protein 	LOC_Os03g05260.1	"ankyrin repeat domain containing protein, expressed"	Medtr2g055950.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115292.1.S1_at	A	A1TS	POPTR_0002s03250	POPTR_0002s03250 (11)	scaffold_2:2001305-2002180(+) (11)	NA	P25519	GTP-binding protein hflX	AT5G57960.1	"GTP-binding protein, HflX "	LOC_Os11g38020.1	"GTPase of unknown function domain containing protein, putative, expressed"	AC235668_12.1	Small GTP-binding protein domain AC235668.1 41853-35303 E EGN_Mt090430 200	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.11530.1.A1_at	A	A1TS	POPTR_0006s07390	POPTR_0006s07390 (11)	scaffold_6:5324734-5325039(-) (11)	NA	Q6YUU5	Putative multidrug resistance protein	AT3G28345.1	ABC transporter family protein 	LOC_Os02g09720.1	"multidrug resistance protein, putative, expressed"	Medtr6g009880.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.115316.1.S1_at	A	A1TS	POPTR_0004s15700	POPTR_0004s15700 (11)	scaffold_4:16277182-16277634(+) (11)	NA	NA	NA	AT5G66580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os06g41940.1	expressed protein	Medtr5g018720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115333.1.A1_s_at	A	A1TS	POPTR_0005s04820	POPTR_0005s04820 (11)	scaffold_5:3230338-3233352(+) (11)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11535.1.A1_s_at	A	A6TS	POPTR_0013s12510	POPTR_0013s12510 (9)//POPTR_0013s12670 (9)//POPTR_0151s00220 (9)//POPTR_0013s12560 (9)//POPTR_0151s00210 (9)//POPTR_0013s12600 (9)	scaffold_13:13169604-13169750(-) (9)//scaffold_13:13198794-13198930(-) (9)//scaffold_13:13245253-13245389(-) (9)//scaffold_13:13302373-13302509(-) (9)//scaffold_13:13326364-13326500(-) (9)//scaffold_13:13364475-13364611(-) (9)//scaffold_151:22815-22951(+) (9)//scaffold_151:37078-37229(+) (9)	POPTR_0013s12620 (8)//POPTR_0013s12580 (8)	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g19420.1	"O-methyltransferase, putative, expressed"	Medtr5g082640.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.11535.3.S1_at	A	A1TS	POPTR_0012s14560	POPTR_0012s14560 (11)	scaffold_12:14415483-14415559(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.11535.3.S1_s_at	A	A1TS	POPTR_0012s14560	POPTR_0012s14560 (11)	scaffold_12:14415367-14415432(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.11535.4.S1_at	A	A1TA	POPTR_0013s12510	POPTR_0013s12510 (9)	scaffold_13:13169783-13169901(+) (9)	POPTR_0151s00220 (8)//POPTR_0151s00210 (7)//POPTR_0013s12640 (6)	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g19420.1	"O-methyltransferase, putative, expressed"	Medtr5g082640.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.11535.6.S1_at	A	A1TS	POPTR_0006s19030	POPTR_0006s19030 (11)	scaffold_6:17866303-17866800(-) (11)	NA	Q9ZV51	RING-H2 finger protein ATL56	AT2G18670.1	RING/U-box superfamily protein 	LOC_Os02g50990.3	"RING-H2 finger protein ATL1Q, putative, expressed"	Medtr8g127780.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115352.1.S1_at	A	A1TS	POPTR_0014s17800	POPTR_0014s17800 (9)	scaffold_14:14126690-14127488(-) (9)	NA	NA	NA	AT3G17668.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os04g49940.1	expressed protein	NA	NA	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.11536.1.A1_at	A	A1TS	POPTR_0018s10140	POPTR_0018s10140 (11)	scaffold_18:11122532-11122884(-) (11)	NA	Q54DY9	Probable mitochondrial chaperone BCS1-B	AT5G57480.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g26260.1	"AAA-type ATPase family protein, putative, expressed"	Medtr8g128800.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.11537.1.S1_s_at	A	A1TS	POPTR_0001s23870	POPTR_0001s23870 (11)	scaffold_1:23246423-23246542(-) (11)	NA	NA	NA	AT2G31930.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr2g080170.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115389.1.S1_s_at	A	A1TS	POPTR_0008s08940	POPTR_0008s08940 (11)	scaffold_8:5551735-5552989(+) (11)	NA	Q6P4K8	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4	AT1G26550.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g24540.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g090170.1	PpiC-type peptidyl-prolyl cis-trans isomerase 	NA	GO:0016853|isomerase activity	NA
PtpAffx.11539.1.A1_at	A	A1TS	POPTR_0002s01870	POPTR_0002s01870 (11)	scaffold_2:997311-997713(-) (11)	NA	Q0JIL1	Probable nucleoredoxin 2	AT1G60420.1	DC1 domain-containing protein 	LOC_Os01g58194.1	"protein disulfide isomerase, putative, expressed"	Medtr3g157120.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin fold "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.1154.1.A1_at	A	A1TS	POPTR_0001s39170	POPTR_0001s39170 (11)	scaffold_1:38367020-38367514(-) (11)	NA	NA	NA	AT3G14750.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 4036 Blast hits to 3091 proteins in 519 species: Archae - 61; Bacteria - 669; Metazoa - 1503; Fungi - 255; Plants - 421; Viruses - 4; Other Eukaryotes - 1123 (source: NCBI BLink). 	LOC_Os07g32450.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g071550.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115455.1.S1_s_at	A	A1TS	POPTR_0013s06980	POPTR_0013s06980 (11)	scaffold_13:5667824-5669931(-) (11)	NA	NA	NA	NA	NA	LOC_Os07g26974.1	expressed protein	Medtr2g034570.1	Prefoldin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115474.1.S1_s_at	A	A1TS	POPTR_0007s13280	POPTR_0007s13280 (11)	scaffold_7:13400267-13401659(+) (11)	NA	A4FLF6	UPF0261 protein SACE_5696	AT5G66420.2	"LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP033271 (InterPro:IPR008322), TIM-barrel signal transduction protein, predicted (InterPro:IPR009215); Has 1232 Blast hits to 1230 proteins in 311 species: Archae - 18; Bacteria - 959; Metazoa - 1; Fungi - 84; Plants - 42; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). "	LOC_Os06g27800.1	"tm-1GCR237 protein, putative, expressed"	Medtr8g092870.1	"Glycoside hydrolase, family 5; Carbamoyl-phosphate synthase L chain, ATP-binding; Protein of unknown function UPF0261 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115482.1.S1_at	A	A1TS	POPTR_0001s21340	POPTR_0001s21340 (11)	scaffold_1:19756251-19756687(+) (11)	NA	NA	NA	AT5G64170.2	dentin sialophosphoprotein-related 	LOC_Os03g27019.6	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115482.1.S1_s_at	A	A1TS	POPTR_0001s21340	POPTR_0001s21340 (11)	scaffold_1:19756004-19756798(+) (11)	NA	NA	NA	AT5G64170.2	dentin sialophosphoprotein-related 	LOC_Os03g27019.6	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115510.1.S1_s_at	A	A1TS	POPTR_0015s14420	POPTR_0015s14420 (9)	scaffold_15:14032201-14033298(+) (11)	NA	NA	NA	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	Medtr8g090220.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.11552.1.A1_at	A	A1TS	POPTR_0007s00700	POPTR_0007s00700 (11)	scaffold_7:350905-351766(-) (11)	NA	Q55141	Acetolactate synthase small subunit	AT2G31810.1	ACT domain-containing small subunit of acetolactate synthase protein 	LOC_Os02g39570.4	"ACT domain containing protein, expressed"	Medtr4g137170.1	"Acetolactate synthase, small subunit "	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.115524.1.S1_at	A	A1MS	POPTR_0008s05280	POPTR_0008s05280 (10)	scaffold_8:3058993-3059167(-) (10)	NA	NA	NA	AT3G12590.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g74310.1	expressed protein	Medtr7g025560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11555.1.S1_at	A	A1TS	POPTR_0008s05520	POPTR_0008s05520 (9)	scaffold_8:3199446-3199702(+) (9)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.2	OBF-binding protein 3 	LOC_Os03g60630.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.11556.1.A1_at	A	A1TS	POPTR_0015s13670	POPTR_0015s13670 (11)	scaffold_15:13520943-13521226(+) (11)	NA	NA	NA	AT4G18372.1	Small nuclear ribonucleoprotein family protein 	LOC_Os06g46390.1	"LSM domain containing protein, expressed"	Medtr2g024370.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115578.1.S1_at	A	A1TS	POPTR_0002s16880	POPTR_0002s16880 (11)	scaffold_2:12626278-12627487(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT3G61610.1	Galactose mutarotase-like superfamily protein 	LOC_Os01g46950.1	"aldose 1-epimerase, putative, expressed"	Medtr4g121890.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.11559.1.A1_at	A	A1TS	POPTR_0009s08790	POPTR_0009s08790 (11)	scaffold_9:7954579-7954956(+) (11)	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.11559.3.A1_s_at	A	A2TS	POPTR_0001s29620	POPTR_0001s29620 (11)//POPTR_0009s08790 (11)	scaffold_1:28285385-28285655(+) (11)//scaffold_9:7953691-7953961(+) (11)	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.1156.1.S1_at	A	A1TS	POPTR_0011s05210	POPTR_0011s05210 (10)	scaffold_11:5097619-5098804(+) (10)	NA	Q9S9U0	Callose synthase 11	AT4G04970.1	glucan synthase-like 1 	LOC_Os01g55040.1	"1,3-beta-glucan synthase component, putative, expressed"	Medtr4g107950.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.115602.1.S1_at	A	A1TS	POPTR_0014s02800	POPTR_0014s02800 (11)	scaffold_14:2327537-2328319(+) (11)	NA	Q6NY52	THO complex subunit 5 homolog	AT5G42920.2	"THO complex,  subunit 5 "	LOC_Os02g52820.1	"cold-induced protein, putative, expressed"	Medtr3g147710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115617.1.S1_at	A	A1TS	POPTR_0016s12390	POPTR_0016s12390 (11)	scaffold_16:11741021-11741475(+) (11)	NA	Q92797	Symplekin	AT5G01400.1	HEAT repeat-containing protein 	LOC_Os07g49320.1	"HEAT repeat family protein, putative, expressed"	AC235756_7.1	"Symplekin, related AC235756.1 62684-53654 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11563.1.A1_at	A	A1TS	POPTR_0008s01030	POPTR_0008s01030 (11)	scaffold_8:488376-489371(+) (11)	NA	O80397	Mitogen-activated protein kinase kinase 4	AT1G51660.1	mitogen-activated protein kinase kinase 4 	LOC_Os06g09180.1	"OsMKK5 - putative MAPKK based on amino acid sequence homology, expressed"	Medtr4g023250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11563.2.A1_a_at	A	A1TS	POPTR_0010s25570	POPTR_0010s25570 (11)	scaffold_10:21185626-21185887(-) (11)	NA	O80397	Mitogen-activated protein kinase kinase 4	AT1G51660.1	mitogen-activated protein kinase kinase 4 	LOC_Os06g09180.1	"OsMKK5 - putative MAPKK based on amino acid sequence homology, expressed"	Medtr4g023250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.115633.1.S1_at	A	A1TS	POPTR_0017s00410	POPTR_0017s00410 (11)	scaffold_17:131428-131886(-) (11)	NA	Q9M1Y3	F-box/ankyrin repeat protein SKIP35	AT3G59910.1	Ankyrin repeat family protein 	LOC_Os11g14180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115647.1.S1_at	A	A1TS	POPTR_0003s16720	POPTR_0003s16720 (11)	scaffold_3:16249652-16250517(-) (11)	NA	Q9C509	Sphingosine-1-phosphate lyase	AT1G27980.1	dihydrosphingosine phosphate lyase 	LOC_Os01g01080.1	"decarboxylase, putative, expressed"	Medtr7g022250.1	Pyridoxal-dependent decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11565.1.A1_at	A	A1TS	POPTR_0011s14150	POPTR_0011s14150 (11)	scaffold_11:16681125-16681424(+) (11)	NA	O13759	RNA-binding post-transcriptional regulator csx1	AT5G54900.1	RNA-binding protein 45A 	LOC_Os03g37270.2	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.11566.1.A1_at	A	A1TS	POPTR_0003s14840	POPTR_0003s14840 (10)	scaffold_3:14810552-14810866(+) (10)	NA	A4IG72	Transforming growth factor-beta receptor-associated protein 1 homolog	AT1G22860.1	Vacuolar sorting protein 39 	LOC_Os05g01360.1	expressed protein	NA	NA	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding	NA
PtpAffx.115683.1.S1_at	A	A1TS	POPTR_0001s36250	POPTR_0001s36250 (11)	scaffold_1:34787169-34788191(+) (11)	NA	NA	NA	AT3G01720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25265.1); Has 374 Blast hits to 211 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). 	LOC_Os01g67750.1	expressed protein	AC145328_11.1	hypothetical protein AC145328.23 57989-50900 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11571.1.S1_at	A	A1TS	POPTR_0005s08610	POPTR_0005s08610 (11)	scaffold_5:5990769-5991974(+) (11)	NA	NA	NA	AT2G21970.1	stress enhanced protein 2 	LOC_Os04g54630.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11573.1.A1_at	A	A1TS	POPTR_0002s09150	POPTR_0002s09150 (10)	scaffold_2:6481531-6482467(-) (10)	NA	NA	NA	AT4G08540.1	DNA-directed RNA polymerase II protein 	LOC_Os07g43322.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11576.1.A1_at	A	A1MS	POPTR_0006s26120	POPTR_0006s26120 (9)	scaffold_6:24389290-24389578(-) (9)	NA	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os01g08550.1	"aminoacyl-tRNA synthetase, putative, expressed"	Medtr3g135760.1	"aminoacyl-tRNA synthetase family, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115782.1.S1_at	A	A1TS	POPTR_0008s16060	POPTR_0008s16060 (10)	scaffold_8:10724188-10726185(+) (10)	POPTR_0010s08910 (7)	Q75LD5	Probable ion channel CASTOR	AT5G43745.1	Protein of unknown function (DUF1012) 	LOC_Os03g06720.1	expressed protein	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11586.1.A1_s_at	A	A1TS	POPTR_0002s10400	POPTR_0002s10400 (11)	scaffold_2:7491473-7492982(-) (11)	NA	P48348	14-3-3-like protein GF14 kappa	AT5G65430.1	general regulatory factor 8 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g149020.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
PtpAffx.115882.1.S1_s_at	A	A1TS	POPTR_0013s06050	POPTR_0013s06050 (11)	scaffold_13:4477269-4478147(+) (11)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT3G03770.2	Leucine-rich repeat protein kinase family protein 	LOC_Os07g07230.2	"protein kinase, putative, expressed"	Medtr7g103210.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.115895.1.S1_s_at	A	A1TS	POPTR_0015s06930	POPTR_0015s06930 (10)	scaffold_15:7959923-7961188(-) (11)	NA	P09394	Glycerophosphoryl diester phosphodiesterase	AT1G74210.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os01g55780.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr3g076710.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.1159.1.S1_at	A	A1TS	POPTR_0003s08480	POPTR_0003s08480 (11)	scaffold_3:9903722-9904230(+) (11)	NA	Q8GT41	Putative invertase inhibitor	AT5G38610.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os02g01300.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr8g009110.1	"Putative invertase inhibitor precursor, "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.115917.1.S1_s_at	A	A1TS	POPTR_0001s25810	POPTR_0001s25810 (11)	scaffold_1:24867094-24868487(+) (11)	NA	Q6NQ88	Protein DAMAGED DNA-BINDING 2	AT5G58760.1	damaged DNA binding 2 	LOC_Os01g04870.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g078770.1	WD40-like 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.11592.1.A1_at	A	A1TS	POPTR_0004s22700	POPTR_0004s22700 (11)	scaffold_4:21550883-21551257(-) (11)	NA	Q5REY4	"28S ribosomal protein S16, mitochondrial"	AT5G56940.1	Ribosomal protein S16 family protein 	LOC_Os09g32274.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.11592.1.A1_s_at	A	A1TS	POPTR_0004s22700	POPTR_0004s22700 (11)	scaffold_4:21551001-21552859(-) (11)	NA	Q5REY4	"28S ribosomal protein S16, mitochondrial"	AT5G56940.1	Ribosomal protein S16 family protein 	LOC_Os09g32274.1	"30S ribosomal protein S16, putative, expressed"	Medtr2g046330.1	Ribosomal protein S16 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.115926.1.S1_at	A	A1TS	POPTR_0018s08840	POPTR_0018s08840 (9)	scaffold_18:9766233-9766607(+) (9)	NA	Q8S9D1	Pentatricopeptide repeat-containing protein At5g21222	AT5G21222.1	protein kinase family protein 	LOC_Os01g12810.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g009410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11593.1.S1_at	A	A1TS	POPTR_0003s11630	POPTR_0003s11630 (11)	scaffold_3:12404630-12405061(-) (11)	NA	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os08g02490.1	"AT hook motif domain containing protein, expressed"	Medtr8g106590.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11593.3.A1_at	A	A1MA	POPTR_0001s08110	POPTR_0001s08110 (10)	scaffold_1:6176302-6176774(+) (11)	NA	NA	NA	AT4G12080.1	AT-hook motif nuclear-localized protein 1 	LOC_Os08g02490.1	"AT hook motif domain containing protein, expressed"	Medtr8g106590.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115945.1.S1_s_at	A	A1TS	POPTR_0014s08180	POPTR_0014s08180 (11)	scaffold_14:6073188-6073287(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.2	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11595.1.A1_a_at	A	A1TS	POPTR_0011s16630	POPTR_0011s16630 (11)	scaffold_11:18437169-18437796(-) (11)	NA	Q9C5U8	"Histidinol dehydrogenase, chloroplastic"	AT5G63890.2	histidinol dehydrogenase 	LOC_Os01g13190.1	"histidinol dehydrogenase, chloroplast precursor, putative, expressed"	Medtr2g130010.1	Histidinol dehydrogenase 	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004399|histidinol dehydrogenase activity||GO:0051287|NAD or NADH binding||GO:0008270|zinc ion binding	NA
PtpAffx.11595.2.A1_s_at	A	A1TS	POPTR_0001s46960	POPTR_0001s46960 (11)	scaffold_1:47301122-47301223(-) (11)	NA	Q9C5U8	"Histidinol dehydrogenase, chloroplastic"	AT5G63890.2	histidinol dehydrogenase 	LOC_Os01g13190.1	"histidinol dehydrogenase, chloroplast precursor, putative, expressed"	Medtr2g130010.1	Histidinol dehydrogenase 	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004399|histidinol dehydrogenase activity||GO:0051287|NAD or NADH binding||GO:0008270|zinc ion binding	NA
PtpAffx.115954.2.A1_a_at	A	A1TS	POPTR_0009s04220	POPTR_0009s04220 (11)	scaffold_9:4702080-4702260(-) (11)	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT1G07420.1	sterol 4-alpha-methyl-oxidase 2-1 	LOC_Os07g01150.3	"fatty acid hydroxylase, putative, expressed"	Medtr5g036470.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.115954.2.A1_at	A	A1MS	POPTR_0009s04220	POPTR_0009s04220 (10)	scaffold_9:4702327-4702449(-) (10)	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT1G07420.1	sterol 4-alpha-methyl-oxidase 2-1 	LOC_Os07g01150.3	"fatty acid hydroxylase, putative, expressed"	Medtr5g036470.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.11597.1.A1_at	A	A1TS	POPTR_0004s19380	POPTR_0004s19380 (11)	scaffold_4:19232623-19233796(-) (11)	NA	P48279	Uncharacterized protein ycf39	AT4G35250.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g44000.1	"uncharacterized protein ycf39, putative, expressed"	Medtr3g164000.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.115988.1.S1_at	A	A1TS	POPTR_0002s24050	POPTR_0002s24050 (11)	scaffold_2:21516111-21516629(-) (11)	NA	NA	NA	AT3G07510.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g09930.1	expressed protein	Medtr7g046740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115988.2.S1_at	A	A1MS	POPTR_0014s17440	POPTR_0014s17440 (11)	scaffold_14:13612952-13613005(+) (11)	NA	NA	NA	AT3G07510.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g09930.1	expressed protein	Medtr7g046740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.115988.2.S1_s_at	A	A1TS	POPTR_0014s17440	POPTR_0014s17440 (11)	scaffold_14:13613048-13613359(+) (11)	NA	NA	NA	AT3G07510.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01580.1); Has 133 Blast hits to 133 proteins in 14 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g09930.1	expressed protein	Medtr7g046740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1160.1.A1_at	A	A1TS	POPTR_0231s00250	POPTR_0231s00250 (11)	scaffold_231:43504-44772(+) (11)	NA	C7N914	ATP-dependent zinc metalloprotease FtsH	AT5G64580.1	AAA-type ATPase family protein 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr3g143610.1	"Flagellar basal body rod protein; AAA ATPase, central region; Peptidase M41, FtsH extracellular "	NA	GO:0005524|ATP binding	NA
PtpAffx.116026.1.S1_at	A	A1TS	POPTR_0002s20260	POPTR_0002s20260 (11)	scaffold_2:16210695-16211956(+) (11)	NA	O81122	Ethylene receptor	AT2G40940.1	ethylene response sensor 1 	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.116041.1.S1_at	A	A1TS	POPTR_0018s01040	POPTR_0018s01040 (11)	scaffold_18:957610-957985(+) (11)	NA	NA	NA	AT2G25670.2	BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink). 	LOC_Os01g08410.1	"early fruit mRNA, putative, expressed"	Medtr3g136050.1	"M355, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11605.1.A1_at	A	A1TS	POPTR_0905s00195	POPTR_0905s00195 (10)	scaffold_905:1039-1340(+) (10)	POPTR_0019s06060 (6)	NA	NA	AT5G35930.1	AMP-dependent synthetase and ligase family protein 	LOC_Os06g02160.4	"AMP-binding enzyme family protein, expressed"	Medtr8g150990.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like; Quinonprotein alcohol dehydrogenase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116088.1.S1_at	A	A1TS	POPTR_0015s12410	POPTR_0015s12410 (10)	scaffold_15:12662070-12662721(+) (10)	NA	NA	NA	AT5G45170.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os12g43520.1	"cbbY protein-related, putative, expressed"	AC235753_15.1	"HAD-superfamily hydrolase subfamily IA, variant 3 AC235753.1 88087-84841 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1161.1.A1_at	A	A1TS	POPTR_0011s06010	POPTR_0011s06010 (11)	scaffold_11:6031469-6031888(+) (11)	NA	O04681	Pathogenesis-related genes transcriptional activator PTI5	AT3G23240.1	ethylene response factor 1 	LOC_Os02g43790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr2g018530.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.116115.1.S1_at	A	A1TS	POPTR_0005s24040	POPTR_0005s24040 (10)	scaffold_5:22692984-22693176(-) (10)	NA	Q9M9Y5	Probable galacturonosyltransferase 6	AT1G06780.1	galacturonosyltransferase 6 	LOC_Os11g37980.1	"GAUT2/LGT2, putative, expressed"	Medtr2g033340.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.11613.1.A1_a_at	A	A1TA	POPTR_0002s22950	POPTR_0002s22950 (10)	scaffold_2:20180978-20181016(-) (10)//scaffold_59:8880-8918(+) (11)//scaffold_8:18753593-18753631(-) (11)//scaffold_8:18783929-18783967(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11615.1.A1_at	A	A1TS	POPTR_0014s06580	POPTR_0014s06580 (11)	scaffold_14:4998773-5001209(-) (11)	NA	O81322	LOB domain-containing protein 31	AT4G00210.1	LOB domain-containing protein 31 	LOC_Os03g14270.1	"DUF260 domain containing protein, putative"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116155.1.S1_at	A	A1TA	POPTR_0008s06140	POPTR_0008s06140 (11)	scaffold_8:3633082-3633518(+) (11)	NA	Q9M331	Probable peptide/nitrate transporter At3g53960	AT3G53960.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.116158.1.S1_at	A	A1TS	POPTR_0019s06140	POPTR_0019s06140 (11)	scaffold_19:6711214-6711306(+) (11)	NA	Q94AA9	"Xylogalacturonan beta-1,3-xylosyltransferase"	AT3G45400.1	exostosin family protein 	LOC_Os03g20850.1	"exostosin family domain containing protein, expressed"	Medtr7g103930.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.116166.1.S1_at	A	A1TS	POPTR_0002s12480	POPTR_0002s12480 (11)	scaffold_2:9259365-9259399(+) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.116166.1.S1_s_at	A	A1TS	POPTR_0002s12480	POPTR_0002s12480 (11)	scaffold_2:9259442-9259931(+) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.116172.1.S1_s_at	A	A1TS	POPTR_0008s00490	POPTR_0008s00490 (11)	scaffold_8:196944-196983(-) (11)	NA	Q9LJX4	Pumilio homolog 5	AT3G20250.1	pumilio 5 	LOC_Os08g40830.3	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.11619.1.S1_at	A	A1TS	POPTR_0017s01650	POPTR_0017s01650 (11)	scaffold_17:1177944-1179070(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT4G25680.1	PPPDE putative thiol peptidase family protein 	LOC_Os10g38970.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr4g092240.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116198.1.S1_s_at	A	A1TS	POPTR_0007s08600	POPTR_0007s08600 (11)	scaffold_7:7460646-7460988(+) (11)	NA	Q7Z569	BRCA1-associated protein	AT2G26000.2	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g09060.1	"BRCA1-associated protein, putative, expressed"	Medtr2g127260.1	"Zinc finger, UBP-type; Zinc finger, RING-type; BRCA1-associated 2 "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.11621.1.A1_s_at	A	A1TS	POPTR_0015s14220	POPTR_0015s14220 (11)	scaffold_15:13907600-13907878(-) (11)	NA	NA	NA	AT5G62200.1	"Embryo-specific protein 3, (ATS3) "	LOC_Os01g07780.1	"embryo-specific 3, putative, expressed"	Medtr1g130360.1	Embryo-specific 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11623.1.A1_a_at	A	A2TS	POPTR_0001s31510	POPTR_0001s31510 (11)//POPTR_0019s01790 (11)	scaffold_1:29812584-29812686(+) (11)//scaffold_19:1549324-1549429(+) (11)	NA	NA	NA	AT5G09850.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os12g06850.1	"transcription elongation factor protein, putative, expressed"	Medtr3g144310.1	"Transcription factors TFIIS, elongin A, CRSP70, conserved "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.11623.1.A1_at	A	A1TS	POPTR_0001s31510	POPTR_0001s31510 (9)	scaffold_1:29812399-29813035(+) (9)	NA	NA	NA	AT5G09850.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os12g06850.1	"transcription elongation factor protein, putative, expressed"	Medtr3g144310.1	"Transcription factors TFIIS, elongin A, CRSP70, conserved "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.11623.2.S1_at	A	A1TS	POPTR_0019s01790	POPTR_0019s01790 (9)	scaffold_19:1548853-1549513(+) (9)	NA	NA	NA	AT5G09850.1	Transcription elongation factor (TFIIS) family protein 	LOC_Os12g06850.1	"transcription elongation factor protein, putative, expressed"	Medtr3g144310.1	"Transcription factors TFIIS, elongin A, CRSP70, conserved "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.116237.1.A1_a_at	A	A1TS	POPTR_0007s04960	POPTR_0007s04960 (11)	scaffold_7:3155945-3156346(-) (11)	NA	Q9LX93	E3 ubiquitin-protein ligase RING1	AT5G10380.1	RING/U-box superfamily protein 	LOC_Os04g37740.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g120960.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11625.1.A1_at	A	A1TA	POPTR_0010s09970	POPTR_0010s09970 (9)	scaffold_10:10563744-10564113(+) (10)	NA	Q9LUW0	"Lipoxygenase 5, chloroplastic"	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr1g132610.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.11626.1.A1_a_at	A	A1TS	POPTR_0006s06970	POPTR_0006s06970 (11)	scaffold_6:5019238-5019776(-) (11)	POPTR_0727s00200 (7)	Q10E50	Phospholipase A2 homolog 3	AT2G06925.1	Phospholipase A2 family protein 	LOC_Os03g50030.1	"phospholipase A2, putative, expressed"	Medtr6g092420.1	Phospholipase A2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11627.1.A1_at	A	A1MA	POPTR_0006s09820	POPTR_0006s09820 (11)	scaffold_1:44788158-44788197(+) (11)//scaffold_10:2317582-2317621(-) (11)//scaffold_11:18417488-18417527(+) (11)//scaffold_12:489181-489220(-) (11)//scaffold_15:221656-221695(-) (11)//scaffold_16:13854507-13854546(-) (11)//scaffold_18:80564-87442(+) (11)//scaffold_2:5399781-5399820(+) (11)//scaffold_2566:3442-3481(+) (11)//scaffold_31:177347-177386(-) (11)//scaffold_5:4097561-4097600(+) (11)//scaffold_6:7212170-7212209(+) (11)//scaffold_8:12859839-12859878(-) (11)	NA	Q9M390	Peptide transporter PTR1	AT3G54140.1	peptide transporter 1 	LOC_Os01g04950.3	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.116292.1.S1_at	A	A1TS	POPTR_0015s12270	POPTR_0015s12270 (11)	scaffold_15:12601710-12602695(+) (11)	NA	NA	NA	AT5G51150.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os07g31260.1	expressed protein	Medtr1g087060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116293.1.S1_s_at	A	A1TS	POPTR_0011s10870	POPTR_0011s10870 (11)	scaffold_11:13421006-13425137(-) (11)	NA	Q9FQ08	ATP-dependent DNA helicase 2 subunit KU70	AT1G16970.1	KU70 homolog 	LOC_Os07g08729.1	"ATP-dependent DNA helicase 2 subunit 1, putative, expressed"	Medtr1g147380.1	"Ku70/Ku80, N-terminal alpha/beta "	GO:0006303|double-strand break repair via nonhomologous end joining||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004003|ATP-dependent DNA helicase activity	GO:0005634|nucleus
PtpAffx.116306.1.S1_at	A	A1TS	POPTR_0018s09900	POPTR_0018s09900 (10)	scaffold_18:10966930-10967502(-) (10)	NA	Q6PQQ3	AP2-like ethylene-responsive transcription factor AIL5	AT5G57390.1	AINTEGUMENTA-like 5 	LOC_Os04g55970.2	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g129150.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.116307.1.S1_at	A	A1TS	POPTR_0019s08180	POPTR_0019s08180 (11)	scaffold_19:9653920-9656742(-) (11)	NA	O94808	Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 2	AT3G24090.1	glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases 	LOC_Os12g03720.1	"glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed"	Medtr7g089900.1	"Glucosamine-fructose-6-phosphate aminotransferase, isomerising "	GO:0005975|carbohydrate metabolic process	GO:0005529|sugar binding	NA
PtpAffx.116308.1.S1_at	A	A1TS	POPTR_0005s22820	POPTR_0005s22820 (9)	scaffold_5:21709838-21710645(+) (9)	NA	Q28D01	WD repeat-containing protein 26	AT5G08560.2	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116313.1.S1_s_at	A	A1TS	POPTR_0002s13790	POPTR_0002s13790 (11)	scaffold_2:10217898-10218234(+) (11)	POPTR_0014s04540 (6)	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11632.1.A1_at	A	A1TS	POPTR_0005s08530	POPTR_0005s08530 (11)	scaffold_5:5940437-5940911(+) (11)	NA	Q9LV85	Protein CPR-5	AT5G64930.1	"CPR5 protein, putative "	LOC_Os02g53070.1	"HYS1, putative, expressed"	Medtr3g144950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11632.2.S1_at	A	A1TS	POPTR_0007s06490	POPTR_0007s06490 (11)	scaffold_7:4863300-4863827(+) (11)	NA	Q9LV85	Protein CPR-5	AT5G64930.1	"CPR5 protein, putative "	LOC_Os02g53070.1	"HYS1, putative, expressed"	Medtr3g144950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116322.1.S1_at	A	A1TS	POPTR_0007s15090	POPTR_0007s15090 (11)	scaffold_7:14730504-14731201(-) (11)	NA	Q9C5X9	Histone acetyltransferase HAC1	AT1G79000.1	histone acetyltransferase of the CBP family 1 	LOC_Os02g04490.1	"histone acetyltransferase HAC1, putative, expressed"	Medtr4g163230.1	"Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.116325.1.S1_s_at	A	A1TS	POPTR_0001s25360	POPTR_0001s25360 (11)	scaffold_1:24514229-24514586(+) (11)	POPTR_0009s04440 (7)	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT5G59010.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11633.1.A1_at	A	A1TS	POPTR_0010s06320	POPTR_0010s06320 (11)	scaffold_10:7722565-7723210(-) (11)	NA	P31170	"25.3 kDa heat shock protein, chloroplastic"	AT4G27670.1	heat shock protein 21 	LOC_Os05g23140.1	"retrotransposon protein, putative, LINE subclass, expressed"	Medtr3g103040.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116345.1.S1_at	A	A1TS	POPTR_0008s17710	POPTR_0008s17710 (10)	scaffold_8:11908333-11909221(+) (10)	NA	O48700	U-box domain-containing protein 6	AT1G24330.1	ARM repeat superfamily protein 	LOC_Os01g67500.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr3g103550.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.116348.1.S1_s_at	A	A1TS	POPTR_0015s12710	POPTR_0015s12710 (11)	scaffold_15:12939943-12941957(+) (11)	NA	Q5RCV3	Nibrin	AT3G02680.1	nijmegen breakage syndrome 1 	LOC_Os10g34580.2	"FHA domain containing protein, putative, expressed"	Medtr5g084040.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11635.1.S1_at	A	A1TS	POPTR_0001s16830	POPTR_0001s16830 (11)	scaffold_1:13653603-13654229(+) (11)	NA	P74007	"Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase"	AT1G54130.1	RELA/SPOT homolog 3 	LOC_Os09g27050.1	"HD domain containing protein, putative, expressed"	Medtr8g025050.1	"Metal-dependent phosphohydrolase, HD subdomain "	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.11635.2.S1_at	A	A1TS	POPTR_0003s06420	POPTR_0003s06420 (9)	scaffold_3:7892465-7892968(-) (9)	NA	P74007	"Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase"	AT1G54130.1	RELA/SPOT homolog 3 	LOC_Os08g35620.1	"HD domain containing protein, putative, expressed"	Medtr8g025050.1	"Metal-dependent phosphohydrolase, HD subdomain "	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.116385.1.S1_s_at	A	A2TS	POPTR_0002s13790	POPTR_0014s04540 (11)//POPTR_0002s13790 (11)	scaffold_14:3498316-3502272(+) (11)//scaffold_2:10219812-10224570(+) (11)	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116385.2.S1_at	A	A1TS	POPTR_0002s13790	POPTR_0002s13790 (9)	scaffold_2:10222570-10222866(+) (9)	NA	O22161	Protein ARABIDILLO 1	AT2G44900.1	ARABIDILLO-1 	LOC_Os10g41360.1	"ARABIDILLO-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11639.1.A1_at	A	A2TS	POPTR_0004s18670	POPTR_0004s18670 (11)//POPTR_0004s18690 (11)	scaffold_4:18476501-18476994(-) (11)//scaffold_4:18484080-18484575(-) (11)	NA	Q9FIC8	Germin-like protein subfamily 1 member 16	AT5G39130.1	RmlC-like cupins superfamily protein 	LOC_Os02g29000.1	Cupin domain containing protein	Medtr1g093090.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.116400.1.S1_at	A	A1TS	POPTR_0014s05520	POPTR_0014s05520 (11)	scaffold_14:4140676-4140859(-) (11)	NA	NA	NA	AT2G44970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g01930.3	"lipase-related, putative, expressed"	Medtr8g006030.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116404.1.S1_s_at	A	A1TS	POPTR_0004s24390	POPTR_0004s24390 (11)	scaffold_4:23074931-23076239(+) (11)	NA	NA	NA	AT2G35610.1	xyloglucanase 113 	LOC_Os03g38930.1	expressed protein	Medtr8g086800.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116443.1.S1_at	A	A1TS	POPTR_0006s12740	POPTR_0006s12740 (10)	scaffold_6:9888914-9889432(+) (10)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.11646.1.S1_at	A	A1TS	POPTR_0010s07720	POPTR_0010s07720 (11)	scaffold_10:8705274-8707335(+) (11)	NA	Q03389	Eukaryotic translation initiation factor 4E-2	AT5G35620.1	Eukaryotic initiation factor 4E protein 	LOC_Os10g32970.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr1g065250.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
PtpAffx.116461.1.S1_at	A	A1TS	POPTR_0002s16070	POPTR_0002s16070 (11)	scaffold_2:11958566-11959713(-) (11)	NA	O80831	Beta-amylase 7	AT2G45880.1	beta-amylase 7 	LOC_Os09g39570.1	"beta-amylase, putative, expressed"	Medtr5g026370.1	"Glycoside hydrolase, family 14; BZR1, transcriptional repressor "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.11649.1.A1_at	A	A1MS	POPTR_0002s16840	POPTR_0002s16840 (11)	scaffold_2:12596835-12597191(+) (11)	NA	Q6TDP4	Kelch-like protein 17	AT3G61600.2	POZ/BTB containin G-protein 1 	LOC_Os06g31100.1	"E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.1165.1.A1_at	A	A1TS	POPTR_0008s11670	POPTR_0008s11670 (11)	scaffold_19:14740130-14740598(+) (10)//scaffold_8:7450275-7451706(-) (10)	NA	Q9C6M1	UPF0016 protein 4	AT1G25520.1	Uncharacterized protein family (UPF0016) 	LOC_Os08g33630.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	AC233660_16.1	Protein of unknown function UPF0016 AC233660.2 65616-67701 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.1165.2.S1_a_at	A	A3TS	POPTR_0008s11670	POPTR_0008s11670 (11)//POPTR_0019s13860 (11)//POPTR_0010s13850 (11)	scaffold_19:14740039-14740213(+) (11)	NA	Q9C6M1	UPF0016 protein 4	AT1G25520.1	Uncharacterized protein family (UPF0016) 	LOC_Os08g33630.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	AC233660_16.1	Protein of unknown function UPF0016 AC233660.2 65616-67701 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.1165.2.S1_at	A	A1TS	POPTR_0010s13850	POPTR_0010s13850 (10)	scaffold_10:13570549-13572150(+) (10)	NA	Q9C6M1	UPF0016 protein 4	AT1G25520.1	Uncharacterized protein family (UPF0016) 	LOC_Os08g33630.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	AC233660_16.1	Protein of unknown function UPF0016 AC233660.2 65616-67701 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.11651.1.A1_a_at	A	A1TS	POPTR_0010s02540	POPTR_0010s02540 (11)	scaffold_10:2991899-2992219(+) (11)	NA	NA	NA	AT4G15790.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). 	LOC_Os12g35620.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11651.2.S1_a_at	A	A1TS	POPTR_0010s02540	POPTR_0010s02540 (9)	scaffold_10:2989972-2990220(+) (9)	NA	NA	NA	AT4G15790.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 411 Blast hits to 380 proteins in 121 species: Archae - 4; Bacteria - 107; Metazoa - 85; Fungi - 29; Plants - 59; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). 	LOC_Os12g35620.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11652.1.S1_at	A	A1TS	POPTR_0014s06680	POPTR_0014s06680 (11)	scaffold_14:5074335-5074792(+) (11)	NA	Q9FVC8	"Dihydrodipicolinate synthase 2, chloroplastic"	AT2G45440.1	dihydrodipicolinate synthase 	LOC_Os04g18200.1	"dihydrodipicolinate synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016829|lyase activity	NA
PtpAffx.116527.1.S1_at	A	A1TS	POPTR_0002s18750	POPTR_0002s18750 (10)	scaffold_2:14618478-14618937(+) (10)	NA	Q9M1R4	Auxin-responsive protein IAA30	AT3G62100.1	indole-3-acetic acid inducible 30 	LOC_Os02g49160.1	"OsIAA8 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g133620.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.11653.2.S1_a_at	A	A1TS	POPTR_0010s12670	POPTR_0010s12670 (11)	scaffold_10:12669335-12670328(-) (11)	POPTR_0008s12560 (7)	P43394	Fruit protein pKIWI502	AT1G15140.1	FAD/NAD(P)-binding oxidoreductase 	LOC_Os02g22260.1	"fruit protein PKIWI502, putative, expressed"	Medtr1g137840.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.11657.1.S1_at	A	A1TS	POPTR_0006s22750	POPTR_0006s22750 (9)	scaffold_6:21670290-21670848(+) (11)	NA	NA	NA	AT3G52610.1	unknown protein; Has 68 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g64256.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr7g127740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11658.1.A1_at	A	A1TS	POPTR_0010s02480	POPTR_0010s02480 (11)	scaffold_10:2865114-2867199(-) (11)	NA	Q9HC21	Mitochondrial thiamine pyrophosphate carrier	AT5G48970.1	Mitochondrial substrate carrier family protein 	LOC_Os01g70800.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g138870.1	Mitochondrial carrier protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116587.1.S1_at	A	A1TS	POPTR_0005s23660	POPTR_0005s23660 (10)	scaffold_5:22384300-22384710(+) (10)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT4G02670.1	indeterminate(ID)-domain 12 	LOC_Os03g10140.1	"ZOS3-04 - C2H2 zinc finger protein, expressed"	Medtr8g018830.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.116591.1.A1_at	A	A1TA	POPTR_0004s13910	POPTR_0004s13910 (10)	scaffold_4:14293550-14293967(-) (10)	NA	Q39128	Potassium channel KAT1	AT5G46240.1	potassium channel in Arabidopsis thaliana 1 	LOC_Os02g14840.1	"potassium channel KAT1, putative, expressed"	Medtr2g024740.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.11664.1.S1_at	A	A1TS	POPTR_0010s17540	POPTR_0010s17540 (11)	scaffold_10:16097190-16097731(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT1G26800.1	RING/U-box superfamily protein 	LOC_Os03g20870.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g044570.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11664.2.S1_at	A	A1TS	POPTR_0008s08690	POPTR_0008s08690 (11)	scaffold_8:5370456-5370882(+) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT1G26800.1	RING/U-box superfamily protein 	LOC_Os06g01200.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g044570.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11665.1.A1_at	A	A1TS	POPTR_0005s25050	POPTR_0005s25050 (10)	scaffold_5:23402274-23402643(-) (10)	NA	O48671	Protein RER1B	AT2G21600.1	endoplasmatic reticulum retrieval protein 1B 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
PtpAffx.116667.1.A1_at	A	A1TS	POPTR_0014s18590	POPTR_0014s18590 (10)	scaffold_14:15929250-15929933(+) (10)	NA	Q28D01	WD repeat-containing protein 26	AT5G43920.1	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11668.1.A1_at	A	A1TS	POPTR_0019s07730	POPTR_0019s07730 (11)	scaffold_19:8861598-8863148(+) (11)	NA	Q16629	Serine/arginine-rich splicing factor 7	AT1G23860.3	RS-containing zinc finger protein 21 	LOC_Os02g54770.2	"RNA recognition motif containing protein, expressed"	Medtr3g133170.1	"Zinc finger, CCHC-type; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.116693.1.S1_s_at	A	A1TS	POPTR_0007s06790	POPTR_0007s06790 (11)	scaffold_7:5146210-5148288(-) (11)	NA	Q9XIK4	UPF0202 protein At1g10490	AT1G10490.1	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) 	LOC_Os12g07300.1	"N-acetyltransferase 10, putative, expressed"	Medtr2g033580.1	Region of unknown function DUF1726 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116697.1.A1_at	A	A1TS	POPTR_0001s33690	POPTR_0001s33690 (10)	scaffold_1:31888223-31888671(+) (10)	NA	Q7ZZ00	Zinc finger protein 511	AT5G14140.1	zinc ion binding;nucleic acid binding;zinc ion binding 	LOC_Os11g30484.1	"ZOS11-03 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.116699.1.S1_at	A	A1TS	POPTR_0010s20720	POPTR_0010s20720 (9)	scaffold_10:18201282-18202059(-) (9)	NA	P49598	Protein phosphatase 2C 37	AT3G11410.1	protein phosphatase 2CA 	LOC_Os01g62760.1	"protein phosphatase 2C, putative, expressed"	Medtr5g087970.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11670.1.S1_a_at	A	A2TS	POPTR_0002s01250	POPTR_0002s01250 (9)//POPTR_0005s27120 (9)	scaffold_2:656415-656778(+) (9)//scaffold_5:24914092-24914449(-) (9)	NA	Q6NPN9	WD repeat-containing protein DWA2	AT1G20540.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g44010.5	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11670.1.S1_at	A	A1TS	POPTR_0005s27120	POPTR_0005s27120 (11)	scaffold_5:24913383-24914394(-) (11)	NA	Q6NPN9	WD repeat-containing protein DWA2	AT1G20540.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g44010.5	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11670.2.A1_a_at	A	A1TS	POPTR_0002s01250	POPTR_0002s01250 (11)	scaffold_2:656583-657499(+) (11)	NA	Q6NPN9	WD repeat-containing protein DWA2	AT1G20540.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g44010.5	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116716.1.A1_at	A	A1TS	POPTR_0006s12120	POPTR_0006s12120 (11)	scaffold_6:9285242-9286184(+) (11)	NA	Q92621	Nuclear pore complex protein Nup205	AT5G51200.1	Protein of unknown function (DUF3414) 	LOC_Os02g10790.1	expressed protein	Medtr7g118310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116726.1.S1_at	A	A1TS	POPTR_0009s05380	POPTR_0009s05380 (11)	scaffold_9:5488204-5491034(-) (11)	NA	Q9SIU2	Nuclear cap-binding protein subunit 1	AT2G13540.1	ARM repeat superfamily protein 	LOC_Os03g22570.2	"MIF4G domain containing protein, putative, expressed"	Medtr7g096860.1	"Initiation factor eIF-4 gamma, middle; ; ; "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.116733.1.A1_s_at	A	A1TS	POPTR_0002s04670	POPTR_0002s04670 (11)	scaffold_2:2914898-2915039(-) (11)	NA	Q9AR19	Histone acetyltransferase GCN5	AT3G54610.1	histone acetyltransferase of the GNAT family 1 	LOC_Os10g28040.1	"histone acetyltransferase GCN5, putative, expressed"	Medtr8g074500.1	GCN5-related N-acetyltransferase; Bromodomain 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.116747.1.A1_at	A	A1TS	POPTR_0018s01080	POPTR_0018s01080 (9)	scaffold_18:994574-995105(-) (11)	NA	Q92576	PHD finger protein 3	AT5G25520.2	SPOC domain / Transcription elongation factor S-II protein 	LOC_Os02g11780.1	"transcription factor S-II, central domain containing protein, expressed"	Medtr3g136140.1	"Transcription elongation factor S-II, central region; SPOC "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
PtpAffx.1168.1.S1_at	A	A1TS	POPTR_0006s13640	POPTR_0006s13640 (11)	scaffold_6:10847654-10848348(-) (11)	POPTR_0006s13650 (8)	Q9SMZ4	Alpha-aminoadipic semialdehyde synthase	AT4G33150.2	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme 	LOC_Os02g54254.1	"saccharopine dehydrogenase, putative, expressed"	Medtr8g133370.1	"NAD(P) transhydrogenase, alpha subunit; Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme conserved region "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.116815.1.S1_at	A	A1TS	POPTR_0012s08910	POPTR_0012s08910 (10)	scaffold_12:9967204-9967414(-) (10)	NA	Q84JS6	Homeobox protein knotted-1-like 6	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os01g19694.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.11682.1.A1_at	A	A1TS	POPTR_0001s23950	POPTR_0001s23950 (11)	scaffold_1:23332991-23333680(-) (11)	NA	NA	NA	AT3G13510.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11682.1.A1_s_at	A	A1TS	POPTR_0001s23950	POPTR_0001s23950 (11)	scaffold_1:23332646-23333618(-) (11)	NA	NA	NA	AT3G13510.1	Protein of Unknown Function (DUF239) 	LOC_Os07g10530.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr4g137040.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11683.1.A1_at	A	A1TS	POPTR_0018s09890	POPTR_0018s09890 (10)	scaffold_18:10936413-10936955(-) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os08g12430.1	"VERNALIZATION-INSENSITIVE, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116857.1.S1_at	A	A1TS	POPTR_0003s14100	POPTR_0003s14100 (11)	scaffold_3:14277011-14277478(+) (11)	POPTR_0001s10720 (7)	Q680C0	GDSL esterase/lipase At4g10955	AT4G10955.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g18480.1	"lipase class 3 family protein, putative, expressed"	Medtr5g028450.1	"lipase class 3 family protein, putative "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.11687.1.A1_at	A	A1TS	POPTR_0006s29390	POPTR_0006s29390 (11)	scaffold_6:26760074-26760368(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os08g40880.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g133100.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.116885.1.S1_at	A	A1MS	POPTR_0006s14030	POPTR_0006s14030 (11)	scaffold_6:11300654-11300883(-) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT1G74960.3	fatty acid biosynthesis 1 	LOC_Os07g42420.1	"3-oxoacyl-synthase, putative, expressed"	Medtr8g132860.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116899.1.S1_at	A	A1TS	POPTR_0005s17110	POPTR_0005s17110 (11)	scaffold_5:14257476-14257931(+) (11)	NA	Q9S9Z7	Probable protein phosphatase 2C 10	AT1G34750.1	Protein phosphatase 2C family protein 	LOC_Os04g37904.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1169.13.S1_a_at	A	A1TS	POPTR_0007s13830	POPTR_0007s13830 (11)	scaffold_7:13851572-13851900(-) (11)	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT4G38960.1	B-box type zinc finger family protein 	LOC_Os09g35880.1	"B-box zinc finger family protein, putative, expressed"	Medtr5g021510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1169.2.S1_s_at	A	A1MS	POPTR_0010s23740	POPTR_0010s23740 (9)	scaffold_10:20227831-20228360(+) (11)	NA	P93354	Histone H2B	AT5G04440.1	Protein of unknown function (DUF1997) 	LOC_Os03g05320.2	expressed protein	Medtr1g068710.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.1169.5.A1_a_at	A	A1TS	POPTR_0008s10640	POPTR_0008s10640 (11)	scaffold_8:6674043-6675997(-) (11)	NA	Q32P73	DNA-directed RNA polymerase II subunit RPB9	AT3G16980.1	RNA polymerases M/15 Kd subunit 	LOC_Os12g37370.1	"DNA-directed RNA polymerase II subunit RPB9, putative, expressed"	Medtr2g038620.1	"DNA-directed RNA polymerase, subunit C11/M/9 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0003899|DNA-directed RNA polymerase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1169.6.A1_s_at	A	A1TS	POPTR_0008s03050	POPTR_0008s03050 (11)	scaffold_8:1601751-1602193(-) (11)	NA	Q9SI96	Histone H2B.3	AT2G28720.1	Histone superfamily protein 	LOC_Os08g38300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.1169.7.A1_x_at	A	A1TS	POPTR_0010s23770	POPTR_0010s23770 (11)	scaffold_10:20259643-20260147(-) (11)	NA	Q1S9I9	Probable histone H2B.1	AT3G45980.1	Histone superfamily protein 	LOC_Os08g38300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.11690.1.A1_at	A	A1TS	POPTR_0178s00200	POPTR_0178s00200 (11)	scaffold_178:2716-3058(+) (11)	NA	NA	NA	AT3G54500.2	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g31360.4	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11690.3.A1_a_at	A	A2TS	POPTR_0178s00200	POPTR_0178s00200 (11)//POPTR_0003s19860 (9)	scaffold_178:2373-2877(+) (11)//scaffold_178:26318-26799(+) (9)//scaffold_3:18482825-18483306(-) (11)//scaffold_3:18511165-18513795(-) (11)//scaffold_3:18578294-18578763(-) (11)	POPTR_0178s00220 (7)	NA	NA	AT3G54500.2	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g31360.4	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116900.1.S1_s_at	A	A1TS	POPTR_0016s05650	POPTR_0016s05650 (11)	scaffold_16:3578943-3579343(+) (11)	NA	O81644	Villin-2	AT2G41740.1	villin 2 	LOC_Os03g24220.2	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
PtpAffx.116902.1.S1_at	A	A1TS	POPTR_0003s04700	POPTR_0003s04700 (11)	scaffold_3:5675767-5681390(-) (11)	NA	NA	NA	AT1G71260.1	WHIRLY 2 	LOC_Os02g06370.1	"whirly transcription factor domain containing protein, expressed"	Medtr5g039580.1	ssDNA-binding transcriptional regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116905.1.A1_at	A	A1TS	POPTR_0001s41900	POPTR_0001s41900 (10)	scaffold_1:41606014-41606548(-) (10)	NA	Q13574	Diacylglycerol kinase zeta	AT2G20900.2	diacylglycerol kinase 5 	LOC_Os04g54200.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.11691.1.S1_at	A	A1MS	POPTR_0004s24060	POPTR_0004s24060 (11)	NA	POPTR_0006s28410 (7)	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.1	Protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.116932.1.S1_at	A	A1TS	POPTR_0016s01210	POPTR_0016s01210 (11)	scaffold_16:514654-515212(+) (11)//scaffold_16:527684-528117(-) (9)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr2g030170.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116935.1.S1_at	A	A2TS	POPTR_0001s10800	POPTR_0001s10800 (11)//POPTR_0003s14150 (10)	scaffold_1:8403724-8405448(+) (11)//scaffold_3:14296780-14298332(+) (11)	NA	Q93YV9	F-box protein SKIP8	AT4G10925.3	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os01g36940.1	"OsFBX13 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116936.1.S1_at	A	A1TS	POPTR_0019s07200	POPTR_0019s07200 (11)	scaffold_19:8056432-8056611(-) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT5G16730.1	Plant protein of unknown function (DUF827) 	LOC_Os05g02820.1	"protein transport protein-related, putative, expressed"	Medtr4g107430.1	"protein transport protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11696.1.S1_s_at	A	A1TS	POPTR_0016s12360	POPTR_0016s12360 (11)	scaffold_16:11704755-11705579(+) (11)	NA	NA	NA	AT5G01450.1	RING/U-box superfamily protein 	LOC_Os05g44550.1	"zinc finger family protein, putative"	Medtr1g023680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.116969.1.S1_s_at	A	A1TS	POPTR_0005s00520	POPTR_0005s00520 (11)	scaffold_5:186342-188273(-) (11)	NA	Q9SJG2	Probable receptor-like protein kinase At2g42960	AT1G56720.3	Protein kinase superfamily protein 	LOC_Os01g21960.1	"serine/threonine-protein kinase, putative, expressed"	AC235094_15.1	"Serine/threonine protein kinase, active site AC235094.1 73772-69130 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11698.1.A1_at	A	A1TS	POPTR_0001s22740	POPTR_0001s22740 (11)	scaffold_1:21621138-21621573(-) (11)	NA	Q6ZQ58	La-related protein 1	AT5G21160.2	LA RNA-binding protein 	LOC_Os01g16110.2	"la domain containing protein, putative, expressed"	Medtr5g095250.1	RNA-binding protein Lupus La; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117004.1.S1_s_at	A	A1TS	POPTR_0003s03720	POPTR_0003s03720 (11)	scaffold_3:4401533-4402321(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19410.1	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117004.2.S1_a_at	A	A1TS	POPTR_0004s24210	POPTR_0004s24210 (11)	scaffold_4:22915750-22916281(-) (11)	NA	Q8R116	Protein notum homolog	AT5G45280.2	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117004.2.S1_at	A	A1TS	POPTR_0004s24210	POPTR_0004s24210 (11)	scaffold_4:22916429-22916527(-) (11)	NA	Q8R116	Protein notum homolog	AT5G45280.2	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11701.1.A1_at	A	A1TS	POPTR_0003s19160	POPTR_0003s19160 (9)	scaffold_3:17957293-17957463(+) (9)	NA	Q9ZVJ3	65-kDa microtubule-associated protein 5	AT2G38720.1	microtubule-associated protein 65-5 	LOC_Os05g33890.1	"microtubule associated protein, putative, expressed"	Medtr8g044460.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117017.1.S1_at	A	A2TS	POPTR_0006s27180	POPTR_0018s01840 (11)//POPTR_0006s27180 (11)	scaffold_18:1671356-1671604(+) (11)//scaffold_6:25162187-25162435(+) (11)	NA	Q9FY48	E3 ubiquitin-protein ligase KEG	AT4G32250.3	Protein kinase superfamily protein 	LOC_Os06g43270.1	"protein kinase domain containing protein, expressed"	Medtr1g013990.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.117024.1.S1_s_at	A	A1TS	POPTR_0001s09660	POPTR_0001s09660 (11)	scaffold_1:7363017-7363578(-) (11)	NA	O81742	Beta-adaptin-like protein C	AT4G23460.1	Adaptin family protein 	LOC_Os03g23950.1	"adapitin protein, putative, expressed"	Medtr4g103980.1	"Adaptin, N-terminal; Alpha/gamma adaptin, C-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.117027.1.S1_a_at	A	A1TS	POPTR_0006s13440	POPTR_0006s13440 (11)	scaffold_6:10649166-10649733(-) (11)	NA	Q1PER6	"L-ascorbate peroxidase 2, cytosolic"	AT3G09640.2	ascorbate peroxidase 2 	LOC_Os07g49400.2	"OsAPx2 - Cytosolic Ascorbate Peroxidase encoding gene 4,5,6,8, expressed"	Medtr4g080090.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.11703.1.A1_at	A	A1TS	POPTR_0016s06990	POPTR_0016s06990 (11)	scaffold_16:4782038-4782629(+) (11)	NA	NA	NA	AT3G61370.1	Protein of unknown function (DUF3245) 	LOC_Os08g44540.1	expressed protein	Medtr4g145050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117043.1.S1_s_at	A	A1TS	POPTR_0001s05650	POPTR_0001s05650 (11)	scaffold_1:4369960-4370925(+) (11)	NA	Q9SH30	Putative copper-transporting ATPase 3	AT1G63440.1	heavy metal atpase 5 	LOC_Os02g10290.1	"copper-transporting ATPase, putative, expressed"	Medtr8g012740.1	Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
PtpAffx.117056.1.S1_s_at	A	A1TS	POPTR_0009s03230	POPTR_0009s03230 (11)	scaffold_9:3921576-3922332(+) (11)	NA	O82598	Aquaporin TIP1-3	AT4G01470.1	tonoplast intrinsic protein 1;3 	LOC_Os01g74450.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.11710.1.A1_at	A	A1TS	POPTR_0003s03250	POPTR_0003s03250 (11)	scaffold_3:3660803-3661313(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.4	casein kinase II  beta chain 1 	LOC_Os10g41520.1	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
PtpAffx.117115.1.S1_at	A	A1TS	POPTR_0006s12510	POPTR_0006s12510 (9)	scaffold_6:9659898-9659930(-) (9)	NA	A9PHC5	S-adenosylmethionine synthase 4	AT2G36880.2	methionine adenosyltransferase 3 	LOC_Os01g18860.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.117115.1.S1_s_at	A	A1TS	POPTR_0006s12510	POPTR_0006s12510 (11)	scaffold_6:9659119-9659912(-) (11)	NA	A9PHC5	S-adenosylmethionine synthase 4	AT2G36880.2	methionine adenosyltransferase 3 	LOC_Os01g18860.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.117121.1.S1_s_at	A	A2TS	POPTR_0010s18320	POPTR_0010s18340 (11)//POPTR_0010s18320 (11)	scaffold_10:16607509-16608336(+) (11)//scaffold_10:16613227-16614049(+) (11)	NA	Q9KG32	Uncharacterized isomerase BH0283	AT4G02860.1	Phenazine biosynthesis PhzC/PhzF protein 	LOC_Os01g16146.1	"phenazine biosynthesis protein, putative, expressed"	Medtr1g086630.1	Phenazine biosynthesis PhzC/PhzF protein 	GO:0009058|biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.11716.1.A1_a_at	A	A1TS	POPTR_0003s07180	POPTR_0003s07180 (11)	scaffold_3:8777998-8778090(-) (11)	NA	O43670	Zinc finger protein 207	AT1G30970.1	zinc finger (C2H2 type) family protein 	LOC_Os09g38790.3	"ZOS9-19 - C2H2 zinc finger protein, expressed"	Medtr4g156140.1	"Zinc finger, BED-type predicted; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11716.1.A1_at	A	A1TS	POPTR_0003s07180	POPTR_0003s07180 (11)	scaffold_3:8779134-8779671(-) (11)	NA	O43670	Zinc finger protein 207	AT1G30970.1	zinc finger (C2H2 type) family protein 	LOC_Os09g38790.3	"ZOS9-19 - C2H2 zinc finger protein, expressed"	Medtr4g156140.1	"Zinc finger, BED-type predicted; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11716.2.S1_a_at	A	A1TS	POPTR_0001s16080	POPTR_0001s16080 (10)	scaffold_1:12889159-12889492(+) (10)	NA	O43670	Zinc finger protein 207	AT1G30970.1	zinc finger (C2H2 type) family protein 	LOC_Os09g38790.3	"ZOS9-19 - C2H2 zinc finger protein, expressed"	Medtr4g156140.1	"Zinc finger, BED-type predicted; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11716.4.A1_a_at	A	A1TS	POPTR_0003s07180	POPTR_0003s07180 (11)	scaffold_3:8777957-8778090(-) (11)	NA	O43670	Zinc finger protein 207	AT1G30970.1	zinc finger (C2H2 type) family protein 	LOC_Os09g38790.3	"ZOS9-19 - C2H2 zinc finger protein, expressed"	Medtr4g156140.1	"Zinc finger, BED-type predicted; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.117183.1.A1_a_at	A	A1TS	POPTR_0006s27900	POPTR_0006s27900 (11)	scaffold_6:25731959-25732127(+) (11)	NA	Q5VRH9	U-box domain-containing protein 12	AT4G31890.2	ARM repeat superfamily protein 	LOC_Os09g25000.1	"spotted leaf 11, putative, expressed"	Medtr3g138130.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117188.1.S1_s_at	A	A1TS	POPTR_0003s15650	POPTR_0003s15650 (11)	scaffold_3:15410596-15412483(+) (11)	POPTR_0001s12470 (6)	Q54V77	CTP synthase	AT1G30820.1	CTP synthase family protein 	LOC_Os01g43020.1	"CTP synthase, putative, expressed"	Medtr8g084050.1	CTP synthase 	GO:0044281|small molecule metabolic process||GO:0006221|pyrimidine nucleotide biosynthetic process	GO:0003883|CTP synthase activity	NA
PtpAffx.117198.1.S1_at	A	A1TS	POPTR_0015s01610	POPTR_0015s01610 (10)	scaffold_15:1008520-1008668(-) (10)	NA	Q9M3B0	Probable pectinesterase/pectinesterase inhibitor 34	AT3G49220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g13320.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.1172.1.S1_at	A	A1TS	POPTR_0006s22780	POPTR_0006s22780 (11)	scaffold_6:21691762-21692211(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.1172.2.A1_at	A	A1TA	POPTR_0006s22780	POPTR_0006s22780 (11)	scaffold_6:21691617-21692149(-) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.1172.3.S1_a_at	A	A2TS	POPTR_0006s22780	POPTR_0016s07890 (11)//POPTR_0006s22780 (11)	scaffold_16:5718974-5719019(+) (11)//scaffold_6:21690875-21690920(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.11720.1.S1_at	A	A1TS	POPTR_0015s03450	POPTR_0015s03450 (11)	scaffold_15:3004875-3006459(-) (11)	NA	Q9S7P9	SNAP25 homologous protein SNAP33	AT5G61210.1	soluble N-ethylmaleimide-sensitive factor adaptor protein 33 	LOC_Os02g24080.5	"SNARE domain containing protein, putative, expressed"	Medtr8g025530.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117202.1.A1_at	A	A1TS	POPTR_0014s08130	POPTR_0014s08130 (11)	scaffold_14:6045900-6046368(+) (11)	NA	Q5XF03	Probable glycerol-3-phosphate acyltransferase 8	AT4G00400.1	glycerol-3-phosphate acyltransferase 8 	LOC_Os01g63580.1	"glycerol-3-phosphate acyltransferase, putative, expressed"	Medtr8g031940.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.11725.1.S1_at	A	A1TS	POPTR_0004s04650	POPTR_0004s04650 (11)	scaffold_4:3399875-3400134(-) (11)	NA	Q2T9J0	Peroxisomal leader peptide-processing protease	AT1G28320.1	protease-related 	LOC_Os05g41810.1	"OsDegp8 - Putative Deg protease homologue, expressed"	Medtr2g017690.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11726.1.A1_at	A	A1MS	POPTR_0010s17140	POPTR_0010s17140 (11)	scaffold_10:15866090-15866350(+) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11727.1.A1_at	A	A1TS	POPTR_0008s16420	POPTR_0008s16420 (11)	scaffold_8:11002524-11002929(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11729.1.S1_at	A	A1TS	POPTR_0010s07780	POPTR_0010s07780 (11)	scaffold_10:8730521-8730938(-) (11)	NA	NA	NA	AT2G33400.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04030.1); Has 3875 Blast hits to 2949 proteins in 323 species: Archae - 6; Bacteria - 281; Metazoa - 960; Fungi - 593; Plants - 281; Viruses - 98; Other Eukaryotes - 1656 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11729.2.A1_at	A	A1TS	POPTR_0008s17050	POPTR_0008s17050 (11)	scaffold_8:11467697-11468180(+) (11)	NA	NA	NA	AT5G44040.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G04030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117302.1.A1_at	A	A1TS	POPTR_0001s44960	POPTR_0001s44960 (11)	scaffold_1:45288796-45289268(+) (11)	NA	Q9FFU1	"CRS2-associated factor 2, mitochondrial"	AT5G54890.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os08g08860.1	"CRS2-associated factor 2, mitochondrial precursor, putative, expressed"	Medtr7g083490.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.117353.1.A1_s_at	A	A1TS	POPTR_0018s09980	POPTR_0018s09980 (11)	scaffold_18:11036440-11036876(+) (11)	NA	Q05001	NADPH--cytochrome P450 reductase	AT4G30210.1	P450 reductase 2 	LOC_Os09g38620.1	"NADPH reductase, putative, expressed"	Medtr8g129070.1	"Flavodoxin/nitric oxide synthase; Sulphite reductase [NADPH] flavoprotein, alpha chain "	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.11736.1.A1_at	A	A1TS	POPTR_0019s15390	POPTR_0019s15390 (11)	scaffold_19:15902882-15903108(-) (11)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT1G09575.1	Protein of unknown function (DUF607) 	LOC_Os12g02880.1	"E2F-related protein, putative, expressed"	Medtr5g083910.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117367.1.A1_s_at	A	A1TS	POPTR_0010s18910	POPTR_0010s18910 (11)	scaffold_10:17003564-17004179(-) (11)	NA	Q28HE5	Probable sodium-coupled neutral amino acid transporter 6	AT3G56200.1	Transmembrane amino acid transporter family protein 	LOC_Os01g61044.2	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g091190.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11739.1.A1_at	A	A1TS	POPTR_0004s11110	POPTR_0004s11110 (11)	scaffold_4:9706095-9706336(+) (11)	NA	P48724	Eukaryotic translation initiation factor 5	AT1G77840.1	Translation initiation factor IF2/IF5 	LOC_Os06g48355.1	expressed protein	Medtr7g094130.1	Translation initiation factor IF5; eIF4-gamma/eIF5/eIF2-epsilon 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.1174.1.S1_s_at	A	A1TS	POPTR_0003s19140	POPTR_0003s19140 (11)	scaffold_3:17934082-17934460(-) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.117404.1.S1_s_at	A	A1TS	POPTR_0010s04820	POPTR_0010s04820 (11)	scaffold_10:5983937-5985101(-) (11)	NA	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.11742.1.A1_at	A	A1TS	POPTR_0001s14780	POPTR_0001s14780 (11)	scaffold_1:11632926-11633350(-) (11)	NA	Q39262	Zinc finger protein 3	AT5G10970.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr3g138050.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11742.2.A1_at	A	A1TS	POPTR_0003s17900	POPTR_0003s17900 (10)	scaffold_3:17140327-17140796(-) (10)	NA	Q42485	Zinc finger protein 1	AT5G10970.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr3g138050.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.11743.1.A1_at	A	A1TS	POPTR_0005s18880	POPTR_0005s18880 (11)	scaffold_5:17286774-17287070(-) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr8g099260.1	"Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.117432.1.S1_at	A	A1TS	POPTR_0002s17620	POPTR_0002s17620 (11)	scaffold_2:13453083-13454035(-) (11)	NA	Q40522	Ras-related protein Rab11D	AT1G01200.1	RAB GTPase homolog A3 	LOC_Os09g35860.1	"ras-related protein, putative, expressed"	Medtr8g029570.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.117433.1.S1_at	A	A1TS	POPTR_0010s21200	POPTR_0010s21200 (11)	scaffold_10:18572933-18573357(-) (11)	NA	Q8K339	DNA/RNA-binding protein KIN17	AT1G55460.1	"DNA/RNA-binding protein Kin17, conserved region "	LOC_Os03g37330.1	"KIN, antigenic determinant of recA protein, putative, expressed"	Medtr5g099450.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11745.1.A1_at	A	A1TS	POPTR_0006s00850	POPTR_0006s00850 (11)	scaffold_6:475767-476006(+) (11)	NA	Q9Y5K3	Choline-phosphate cytidylyltransferase B	AT2G32260.1	phosphorylcholine cytidylyltransferase 	LOC_Os02g07720.2	"cytidylyltransferase domain containing protein, expressed"	Medtr4g089770.1	Cytidylyltransferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.117462.1.S1_at	A	A1TS	POPTR_0014s03350	POPTR_0014s03350 (9)	scaffold_14:2690540-2691375(+) (9)	NA	NA	NA	AT2G26550.2	heme oxygenase 2 	LOC_Os03g27770.1	"heme oxygenase 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11747.1.S1_at	A	A1TS	POPTR_0011s00480	POPTR_0011s00480 (11)	scaffold_11:198042-198513(+) (11)	NA	Q1JPL7	Pectinesterase/pectinesterase inhibitor 18	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g046920.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.11747.2.A1_a_at	A	A1TS	POPTR_0011s00480	POPTR_0011s00480 (10)	scaffold_11:197952-197985(+) (10)//scaffold_4:1276520-1276553(-) (10)	NA	Q1JPL7	Pectinesterase/pectinesterase inhibitor 18	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g046920.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.117473.1.S1_at	A	A1TS	POPTR_0006s09460	POPTR_0006s09460 (11)	scaffold_6:6950451-6950993(+) (11)	NA	P27880	18.2 kDa class I heat shock protein	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067230.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117511.1.S1_s_at	A	A1TS	POPTR_0015s07040	POPTR_0015s07040 (11)	scaffold_15:8121420-8124668(-) (11)	NA	P87061	Tip elongation aberrant protein 1	AT1G18610.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117542.1.S1_at	A	A1TS	POPTR_0013s09090	POPTR_0013s09090 (10)	scaffold_13:8646633-8647128(+) (10)	NA	Q84WF5	Probable VAMP-like protein At1g33475	AT4G10170.2	SNARE-like superfamily protein 	LOC_Os08g01880.1	"synaptobrevin-related family protein, putative, expressed"	Medtr3g016650.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117543.1.S1_at	A	A1TS	POPTR_0018s05060	POPTR_0018s05060 (11)	scaffold_18:4494473-4495107(+) (11)	NA	O23969	Pollen-specific protein SF21	AT5G11790.1	N-MYC downregulated-like 2 	LOC_Os02g13150.1	"pollen-specific protein SF21, putative, expressed"	Medtr1g020750.1	"Legume lectin, beta domain; Ndr "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117551.1.S1_s_at	A	A1TS	POPTR_0012s08040	POPTR_0012s08040 (11)	scaffold_12:9050110-9052252(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT5G50000.1	Protein kinase superfamily protein 	LOC_Os05g50190.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.117628.1.S1_at	A	A1TS	POPTR_0016s02510	POPTR_0016s02510 (11)	scaffold_16:1240221-1240876(+) (11)	NA	Q9FYE1	Metacaspase-9	AT5G04200.1	metacaspase 9 	LOC_Os11g04010.1	"ICE-like protease p20 domain containing protein, putative, expressed"	Medtr7g104790.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.11764.1.S1_at	A	A1TS	POPTR_0019s11810	POPTR_0019s11810 (9)	scaffold_19:13046095-13046303(+) (11)//scaffold_19:13087411-13087621(+) (9)	POPTR_0019s11820 (6)//POPTR_0019s11830 (6)	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.117662.1.S1_at	A	A1TS	POPTR_0001s10270	POPTR_0001s10270 (10)	scaffold_1:7956600-7957458(+) (10)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT3G61610.1	Galactose mutarotase-like superfamily protein 	LOC_Os05g49430.1	"aldose 1-epimerase, putative, expressed"	Medtr5g009770.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.117669.1.S1_at	A	A1TS	POPTR_0011s14770	POPTR_0011s14770 (11)	scaffold_11:17043107-17044006(-) (11)	NA	Q14149	MORC family CW-type zinc finger protein 3	AT1G19100.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os06g41710.1	"CW-type Zinc Finger, putative, expressed"	Medtr5g024760.1	"ATP-binding region, ATPase-like; Zinc finger, CW-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.11769.1.S1_s_at	A	A1TS	POPTR_0015s14150	POPTR_0015s14150 (11)	scaffold_15:13872486-13872965(+) (11)	NA	Q41382	DEAD-box ATP-dependent RNA helicase 7	AT5G62190.1	DEAD box RNA helicase (PRH75) 	LOC_Os09g34910.1	"DEAD-box ATP-dependent RNA helicase 7, putative, expressed"	Medtr1g130350.1	"Helicase, C-terminal; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.117698.1.S1_s_at	A	A1TS	POPTR_0002s21660	POPTR_0002s21660 (11)	scaffold_2:18209673-18213409(+) (11)	NA	NA	NA	AT2G32980.1	unknown protein; Has 158 Blast hits to 154 proteins in 73 species: Archae - 0; Bacteria - 61; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 28; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os08g10410.1	expressed protein	Medtr2g005540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1177.1.A1_at	A	A1TS	POPTR_0016s06410	POPTR_0016s06410 (11)	scaffold_16:4313185-4313554(+) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT5G06600.2	ubiquitin-specific protease 12 	LOC_Os12g30540.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr3g110680.2	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Small acid-soluble spore protein, alpha/beta type; MATH "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.1177.2.S1_s_at	A	A1TS	POPTR_0014s09000	POPTR_0014s09000 (11)	scaffold_14:6651817-6652040(-) (11)	NA	Q921I9	Exosome complex exonuclease RRP41	AT3G61620.2	3'-5'-exoribonuclease family protein 	LOC_Os09g07820.2	"exosome complex exonuclease, putative, expressed"	Medtr7g143590.1	3 exoribonuclease 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.117716.1.S1_at	A	A1TS	POPTR_0013s11910	POPTR_0013s11910 (11)	scaffold_13:12532881-12533009(-) (11)	NA	NA	NA	AT1G34355.1	forkhead-associated (FHA) domain-containing protein  	LOC_Os11g07050.1	"FHA domain containing protein, putative, expressed"	Medtr1g122320.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117717.1.S1_s_at	A	A1TS	POPTR_0001s44290	POPTR_0001s44290 (11)	scaffold_1:44753850-44754749(-) (11)	NA	Q9LT47	Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM	AT3G20740.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g04270.3	"WD domain, G-beta repeat domain containing protein, expressed"	AC234703_19.1	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117730.1.S1_s_at	A	A2TS	POPTR_0018s14350	POPTR_0018s14350 (11)//POPTR_0269s00220 (9)	scaffold_18:14583922-14584456(-) (11)//scaffold_269:14676-15148(-) (10)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.117744.1.S1_at	A	A1TS	POPTR_0005s03790	POPTR_0005s03790 (11)	scaffold_5:2529073-2529827(-) (11)	NA	Q8L4B2	Nuclear transcription factor Y subunit C-9	AT1G08970.2	"nuclear factor Y, subunit C9 "	LOC_Os02g07450.2	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr7g139450.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.11777.1.A1_s_at	A	A1TS	POPTR_0017s11490	POPTR_0017s11490 (11)	scaffold_17:11230987-11231520(-) (11)	NA	Q42510	Pattern formation protein EMB30	AT1G13980.2	sec7 domain-containing protein 	LOC_Os02g22090.1	"pattern formation protein EMB30, putative, expressed"	Medtr5g087940.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.117770.1.S1_at	A	A1TS	POPTR_0015s13700	POPTR_0015s13700 (9)	scaffold_15:13535388-13536536(+) (9)	NA	NA	NA	AT5G05800.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g10550.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g093090.1	"PIF-like orf1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117771.1.S1_s_at	A	A1TS	POPTR_0011s08700	POPTR_0011s08700 (11)	scaffold_11:10703044-10703598(-) (11)	NA	Q6ATG6	Ribonuclease 3-like protein 2	AT3G20420.1	RNAse THREE-like protein 2 	LOC_Os05g18850.1	"endoribonuclease Dicer, putative, expressed"	Medtr3g142860.1	"Ribonuclease III, bacterial "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.117774.3.S1_at	A	A1MS	POPTR_0018s01700	POPTR_0018s01700 (9)	scaffold_18:1556923-1557173(+) (9)	NA	NA	NA	AT5G25360.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). 	LOC_Os02g10720.1	expressed protein	Medtr4g005450.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117776.1.S1_s_at	A	A1TS	POPTR_0003s16000	POPTR_0003s16000 (11)	scaffold_3:15636336-15636702(+) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT5G38895.2	RING/U-box superfamily protein 	LOC_Os01g70160.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g015020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117819.1.S1_at	A	A1TS	POPTR_0019s12340	POPTR_0019s12340 (9)	scaffold_19:13385745-13386516(-) (9)	NA	Q6T486	Probable E3 ubiquitin-protein ligase rbrA	AT3G53690.1	RING/U-box superfamily protein 	LOC_Os08g35060.1	"protein binding protein, putative, expressed"	Medtr8g026380.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.11783.1.A1_s_at	A	A1TS	POPTR_0013s03190	POPTR_0013s03190 (11)	scaffold_13:1950848-1952648(+) (11)	NA	Q8VZ95	Vesicle-associated protein 1-1	AT3G60600.1	vesicle associated protein 	LOC_Os04g45190.1	"MSP domain containing protein, expressed"	Medtr8g139690.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.11788.1.A1_at	A	A1TS	POPTR_0004s13530	POPTR_0004s13530 (9)	scaffold_4:13818874-13819021(+) (9)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.117893.1.S1_at	A	A1TS	POPTR_0004s20030	POPTR_0004s20030 (10)	scaffold_4:19675642-19676389(-) (10)	NA	Q9ZQW8	Splicing factor U2af small subunit A	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.117895.1.S1_at	A	A1TS	POPTR_0004s04140	POPTR_0004s04140 (11)	scaffold_4:2974805-2976891(+) (11)	NA	NA	NA	AT3G47160.1	RING/U-box superfamily protein 	LOC_Os07g46700.3	"zinc finger, RING-type, putative, expressed"	AC233659_30.2	"Zinc finger, RING-type AC233659.1 131567-127095 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1179.1.A1_at	A	A1MS	POPTR_0011s15900	POPTR_0011s15900 (11)	scaffold_11:17919497-17919914(+) (11)	NA	Q9ZU38	Probable ribose-5-phosphate isomerase	AT5G44520.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g56869.1	"ribose-5-phosphate isomerase A, putative, expressed"	Medtr2g036830.1	Ribose 5-phosphate isomerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117937.1.S1_at	A	A1TS	POPTR_0014s06260	POPTR_0014s06260 (11)	scaffold_14:4770144-4770564(-) (11)	NA	O04887	Pectinesterase 2	AT2G45220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr3g040380.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.117957.1.S1_at	A	A1TS	POPTR_0006s11000	POPTR_0006s11000 (11)	scaffold_6:8348778-8350351(-) (11)	NA	NA	NA	AT2G38570.1	CONTAINS InterPro DOMAIN/s: PRC-barrel-like (InterPro:IPR011033); Has 300 Blast hits to 300 proteins in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). 	LOC_Os03g21630.2	"PRC-barrel domain protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.117958.1.S1_at	A	A1TS	POPTR_0018s11310	POPTR_0018s11310 (11)	scaffold_18:12111132-12113521(+) (11)	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.1180.1.S1_at	A	A1TS	POPTR_0005s02040	POPTR_0005s02040 (11)	scaffold_5:1331521-1332032(+) (11)	NA	Q9FJ10	GATA transcription factor 16	AT5G49300.1	GATA transcription factor 16 	LOC_Os03g61570.2	expressed protein	Medtr7g138200.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.11802.1.S1_at	A	A1TS	POPTR_0006s23060	POPTR_0006s23060 (11)	scaffold_6:21891754-21893307(+) (11)	NA	O80626	60S ribosomal protein L35-2	AT2G39390.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.118020.1.S1_at	A	A1TS	POPTR_0018s08930	POPTR_0018s08930 (11)	scaffold_18:9842307-9844413(-) (11)	NA	NA	NA	AT1G55205.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 137 Blast hits to 137 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118024.1.S1_at	A	A1TS	POPTR_0013s04300	POPTR_0013s04300 (11)	scaffold_13:2898613-2899071(-) (11)	NA	Q9QXN3	Activating signal cointegrator 1	AT2G20410.1	RNA-binding ASCH domain protein 	LOC_Os03g64250.4	expressed protein	Medtr1g093490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118041.1.S1_at	A	A1TS	POPTR_0006s16270	POPTR_0006s16270 (10)	scaffold_6:14199791-14201167(-) (11)	NA	Q941B6	Probable ubiquitin-conjugating enzyme E2 37	AT3G24515.1	ubiquitin-conjugating enzyme 37 	LOC_Os01g42040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr3g083600.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.118042.1.S1_at	A	A1TS	POPTR_0016s03760	POPTR_0016s03760 (10)	scaffold_16:2106213-2106721(-) (10)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.3	"plant-specific domain TIGR01589 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118042.2.S1_at	A	A1MS	POPTR_0016s03760	POPTR_0016s03760 (9)	scaffold_16:2105700-2105815(-) (9)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.3	"plant-specific domain TIGR01589 family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118042.3.S1_a_at	A	A2TS	POPTR_0006s03960	POPTR_0016s03760 (11)//POPTR_0006s03960 (11)	scaffold_16:2108101-2109030(-) (11)//scaffold_6:2686577-2687448(-) (11)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118042.3.S1_at	A	A1MS	POPTR_0006s03960	POPTR_0006s03960 (10)	scaffold_6:2686461-2686570(-) (10)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118046.1.S1_at	A	A1TS	POPTR_0009s11110	POPTR_0009s11110 (11)	scaffold_9:9336328-9338884(-) (11)	NA	NA	NA	AT2G15860.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g52780.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118060.1.S1_s_at	A	A1TS	POPTR_0006s17970	POPTR_0006s17970 (11)	scaffold_6:16284115-16285118(-) (11)	POPTR_0018s09760 (6)	Q9ZPI1	Lysyl-tRNA synthetase	AT3G11710.1	lysyl-tRNA synthetase 1 	LOC_Os03g38980.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr2g041510.2	"Aspartyl-tRNA synthetase, class IIb; nucleic acid binding, OB-fold, tRNA/helicase-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.11808.1.S1_at	A	A1MS	POPTR_0010s04630	POPTR_0010s04630 (10)	scaffold_10:5761613-5762147(-) (11)	NA	NA	NA	AT1G70160.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). 	LOC_Os09g22440.1	expressed protein	Medtr5g037490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118080.1.S1_s_at	A	A1TS	POPTR_0004s17840	POPTR_0004s17840 (11)	scaffold_4:17887016-17887386(+) (11)	NA	Q38896	Glycine-rich protein 2b	AT4G36020.1	cold shock domain protein 1 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.118083.1.S1_s_at	A	A1TS	POPTR_0014s12660	POPTR_0014s12660 (11)	scaffold_14:9312971-9313212(+) (11)	NA	Q9FJY7	Pentatricopeptide repeat-containing protein At5g66520	AT5G66520.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g55960.1	"pentatricopeptide, putative"	Medtr7g130260.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11810.1.A1_s_at	A	A1TS	POPTR_0010s00700	POPTR_0010s00700 (10)	scaffold_10:397603-399098(-) (11)	NA	Q8R116	Protein notum homolog	AT5G26670.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g133600.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118106.1.S1_s_at	A	A1TS	POPTR_0014s07350	POPTR_0014s07350 (11)	scaffold_14:5541374-5542612(+) (11)	NA	Q5R831	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT1G12600.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os03g02670.2	"transporter family protein, putative, expressed"	Medtr7g083930.2	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118111.1.S1_at	A	A1TA	POPTR_0001s32390	POPTR_0001s32390 (10)	scaffold_1:30748278-30748808(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118124.1.S1_at	A	A1TS	POPTR_0008s07820	POPTR_0008s07820 (11)	scaffold_8:4813555-4815103(+) (11)	NA	Q55141	Acetolactate synthase small subunit	AT5G16290.2	VALINE-TOLERANT 1 	LOC_Os02g39570.1	"ACT domain containing protein, expressed"	Medtr4g137170.1	"Acetolactate synthase, small subunit "	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.118140.1.S1_at	A	A1TS	POPTR_0001s00780	POPTR_0001s00780 (9)	scaffold_1:638033-638811(-) (9)	NA	Q8U4K7	2-phosphoglycerate kinase	AT5G61450.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g28260.6	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118148.1.S1_at	A	A1TS	POPTR_0006s18020	POPTR_0006s18020 (9)	scaffold_6:16373722-16374132(+) (9)	NA	Q6DFC6	WD repeat-containing protein 75	AT2G18900.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g41620.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g129270.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118167.1.S1_s_at	A	A1TS	POPTR_0004s00280	POPTR_0004s00280 (11)	scaffold_4:65573-66977(+) (11)	NA	O04928	Phosphatidate cytidylyltransferase	AT4G22340.3	cytidinediphosphate diacylglycerol synthase 2 	LOC_Os01g55360.3	"phosphatidate cytidylyltransferase, putative, expressed"	Medtr2g029610.1	Phosphatidate cytidylyltransferase 	NA	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	GO:0016020|membrane
PtpAffx.11818.1.A1_s_at	A	A2TS	POPTR_0004s09810	POPTR_0235s00210 (11)//POPTR_0004s09810 (11)	scaffold_235:28723-29488(-) (11)//scaffold_4:8333722-8334487(-) (11)	NA	NA	NA	AT2G18410.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetylation protein 2 (InterPro:IPR019519); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g10460.1	expressed protein	Medtr5g079110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118185.1.S1_s_at	A	A1TS	POPTR_0002s15550	POPTR_0002s15550 (11)	scaffold_2:11611557-11611889(+) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT1G33060.1	NAC 014 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.118187.1.A1_s_at	A	A1TS	POPTR_0006s11680	POPTR_0006s11680 (11)	scaffold_6:8897059-8897254(-) (11)	NA	Q8GYY1	Heat stress transcription factor A-3	AT5G03720.1	heat shock transcription factor A3 	LOC_Os02g32590.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.118191.1.S1_at	A	A1TS	POPTR_0014s18850	POPTR_0014s18850 (11)	scaffold_14:16355549-16356036(-) (11)	NA	Q56W64	Probable isoaspartyl peptidase/L-asparaginase 3	AT5G61540.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os04g46370.1	"L-asparaginase precursor protein, putative, expressed"	Medtr3g009540.1	"Peptidase T2, asparaginase 2 "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.118197.1.S1_at	A	A1TS	POPTR_0017s03390	POPTR_0017s03390 (10)	scaffold_17:2487966-2489110(+) (10)	NA	Q9FMW5	GEM-like protein 7	AT5G23360.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os04g44510.1	"GEM, putative, expressed"	Medtr1g143990.1	Isopenicillin N synthetase; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11820.1.A1_a_at	A	A2TS	POPTR_0001s45640	POPTR_0011s15280 (9)//POPTR_0001s45640 (9)	scaffold_1:46207879-46207971(-) (9)//scaffold_11:15846859-15846951(+) (9)//scaffold_11:17399361-17399453(+) (9)	NA	Q9XGY5	Mitochondrial import inner membrane translocase subunit Tim13	AT1G61570.1	translocase of the inner mitochondrial membrane 13 	LOC_Os02g45820.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr3g109570.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
PtpAffx.11820.1.A1_at	A	A1TS	POPTR_0001s45640	POPTR_0001s45640 (11)	scaffold_1:46206100-46208032(-) (11)	NA	Q9XGY5	Mitochondrial import inner membrane translocase subunit Tim13	AT1G61570.1	translocase of the inner mitochondrial membrane 13 	LOC_Os02g45820.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr3g109570.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
PtpAffx.11820.2.A1_at	A	A1TS	POPTR_0011s15280	POPTR_0011s15280 (11)	scaffold_11:17399390-17401221(+) (11)	NA	Q9XGY5	Mitochondrial import inner membrane translocase subunit Tim13	AT1G61570.1	translocase of the inner mitochondrial membrane 13 	LOC_Os02g45820.1	"mitochondrial import inner membrane translocase subunit Tim, putative, expressed"	Medtr3g109570.1	"Zinc finger, Tim10/DDP-type "	GO:0061024|membrane organization||GO:0045039|protein import into mitochondrial inner membrane	NA	GO:0042719|mitochondrial intermembrane space protein transporter complex
PtpAffx.118206.1.S1_s_at	A	A2TS	POPTR_0008s07250	POPTR_0008s07250 (11)//POPTR_0010s19230 (11)	scaffold_10:17207584-17207621(+) (11)//scaffold_8:4418873-4418910(-) (11)	NA	P56286	Eukaryotic translation initiation factor 2 subunit alpha	AT2G40290.1	Eukaryotic translation initiation factor 2 subunit 1 	LOC_Os03g18510.1	expressed protein	Medtr3g094730.1	"RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005850|eukaryotic translation initiation factor 2 complex
PtpAffx.118220.1.S1_at	A	A1TS	POPTR_0012s09350	POPTR_0012s09350 (10)	scaffold_12:10399665-10399928(+) (10)	NA	Q98TX3	Programmed cell death protein 4	AT5G63190.2	MA3 domain-containing protein 	LOC_Os08g02690.1	"MA3 domain containing protein, expressed"	Medtr8g110080.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118220.1.S1_s_at	A	A1TS	POPTR_0012s09350	POPTR_0012s09350 (11)	scaffold_12:10399547-10399910(+) (11)	NA	Q98TX3	Programmed cell death protein 4	AT5G63190.2	MA3 domain-containing protein 	LOC_Os08g02690.1	"MA3 domain containing protein, expressed"	Medtr8g110080.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118220.3.S1_a_at	A	A1TS	POPTR_0015s09970	POPTR_0015s09970 (11)	scaffold_15:11039384-11039756(+) (11)	NA	Q98TX3	Programmed cell death protein 4	AT5G63190.2	MA3 domain-containing protein 	LOC_Os08g02690.1	"MA3 domain containing protein, expressed"	Medtr8g110080.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11823.1.S1_at	A	A1TS	POPTR_0003s19740	POPTR_0003s19740 (11)	scaffold_3:18398821-18400407(+) (11)	NA	NA	NA	AT3G07910.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Reactive oxygen species modulator 1 (InterPro:IPR018450); Has 192 Blast hits to 192 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 6; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	NA	NA	Medtr3g020070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118289.1.S1_at	A	A1TS	POPTR_0008s19310	POPTR_0008s19310 (10)	scaffold_8:13258212-13258315(-) (10)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.11830.1.A1_at	A	A1TS	POPTR_0006s21990	POPTR_0006s21990 (11)	scaffold_6:21000828-21001470(-) (11)	NA	Q54GN8	Ribosome biogenesis protein NSA2 homolog	AT5G06360.1	Ribosomal protein S8e family protein 	LOC_Os07g47580.1	"ribosomal protein, putative, expressed"	NA	NA	NA	NA	GO:0005622|intracellular
PtpAffx.11830.2.A1_at	A	A1TS	POPTR_0016s07110	POPTR_0016s07110 (11)	scaffold_16:4950808-4951517(-) (11)	NA	Q54GN8	Ribosome biogenesis protein NSA2 homolog	AT5G06360.1	Ribosomal protein S8e family protein 	LOC_Os07g47580.1	"ribosomal protein, putative, expressed"	NA	NA	NA	NA	GO:0005622|intracellular
PtpAffx.118333.1.S1_s_at	A	A1TS	POPTR_0001s09670	POPTR_0001s09670 (11)	scaffold_1:7376196-7376656(+) (11)//scaffold_673:10898-11358(+) (10)	NA	Q38861	DNA repair helicase XPB1	AT5G41370.1	homolog of xeroderma pigmentosum complementation group B 1 	LOC_Os01g49680.1	"DNA repair helicase XPB2, putative, expressed"	NA	NA	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.118343.1.S1_at	A	A1TS	POPTR_0002s08830	POPTR_0002s08830 (11)	scaffold_2:6206116-6206508(+) (11)	NA	P50747	Biotin--protein ligase	AT2G25710.2	holocarboxylase synthase 1 	LOC_Os02g07040.2	"biotin--protein ligase, putative, expressed"	Medtr3g098110.2	Biotin--acetyl-CoA-carboxylase ligase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0003824|catalytic activity	NA
PtpAffx.118347.1.S1_at	A	A1TS	POPTR_0010s15930	POPTR_0010s15930 (11)	scaffold_10:14991906-14993437(-) (11)	NA	Q8L6H7	"Beta-glucosidase-like SFR2, chloroplastic"	AT3G06510.1	Glycosyl hydrolase superfamily protein 	LOC_Os11g45710.7	"Os11bglu36  SFR2 homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118354.1.S1_at	A	A1TS	POPTR_0004s04210	POPTR_0004s04210 (9)	scaffold_4:3026457-3027347(+) (9)	NA	NA	NA	AT3G15390.1	silencing defective 5 	LOC_Os02g42670.1	"DUF1771 domain containing protein, putative, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11837.1.S1_s_at	A	A1TS	POPTR_0012s09860	POPTR_0012s09860 (11)	scaffold_12:10762011-10762636(-) (11)	NA	Q93VI3	60S ribosomal protein L17-1	AT1G27400.1	Ribosomal protein L22p/L17e family protein 	LOC_Os09g08430.1	"ribosomal protein L22, putative, expressed"	Medtr3g103660.1	"Ribosomal protein L22/L17, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.118389.1.S1_at	A	A1TS	POPTR_0009s14880	POPTR_0009s14880 (11)	scaffold_9:11572620-11575930(-) (11)	POPTR_0004s19720 (6)	A2YBX5	Protein kinase G11A	AT3G44610.1	Protein kinase superfamily protein 	LOC_Os11g05320.1	"AGC_PVPK_like_kin82y.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.11839.1.A1_s_at	A	A1TS	POPTR_0014s13480	POPTR_0014s13480 (11)	scaffold_14:9927096-9927264(+) (11)	NA	NA	NA	AT2G48160.1	Tudor/PWWP/MBT domain-containing protein 	LOC_Os03g24339.1	"PWWP domain containing protein, expressed"	Medtr1g086720.1	PWWP; Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1184.1.A1_at	A	A1MA	POPTR_0005s08940	POPTR_0005s08940 (9)	scaffold_5:6265011-6265403(+) (9)	NA	Q9FGF8	Ethylene-responsive transcription factor ABR1	AT5G64750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.118422.2.S1_a_at	A	A1TS	POPTR_0009s05000	POPTR_0009s05000 (11)	scaffold_9:5204701-5205404(-) (11)	NA	NA	NA	AT3G47160.1	RING/U-box superfamily protein 	LOC_Os07g46700.4	"zinc finger, RING-type, putative, expressed"	Medtr4g013020.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11843.1.S1_a_at	A	A1TS	POPTR_0007s02580	POPTR_0007s02580 (11)	scaffold_7:1519099-1519378(+) (11)	NA	O23044	Peroxidase 3	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os06g46799.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.11843.2.A1_s_at	A	A2TS	POPTR_0007s02580	POPTR_0007s02580 (11)//POPTR_0017s06550 (11)	scaffold_17:4986484-4986579(+) (11)//scaffold_7:1518992-1519087(+) (11)	NA	O23044	Peroxidase 3	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os06g46799.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.118433.2.A1_a_at	A	A1TS	POPTR_0004s16470	POPTR_0004s16470 (11)	scaffold_4:16925095-16925482(-) (11)	NA	P51820	Bifunctional dihydrofolate reductase-thymidylate synthase	AT2G16370.1	thymidylate synthase 1 	LOC_Os11g29390.1	"bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed"	Medtr3g162670.1	Thymidylate synthase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006545|glycine biosynthetic process||GO:0006231|dTMP biosynthetic process	GO:0004799|thymidylate synthase activity||GO:0004146|dihydrofolate reductase activity	NA
PtpAffx.118459.1.S1_at	A	A1TS	POPTR_0017s08630	POPTR_0017s08630 (11)	scaffold_17:7248578-7250048(-) (11)	NA	Q94BZ5	Heat stress transcription factor A-5	AT4G13980.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os02g29340.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g132650.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.118484.1.S1_s_at	A	A2TS	POPTR_0006s26940	POPTR_0006s26940 (11)//POPTR_0018s01620 (11)	scaffold_18:1513586-1513620(-) (11)//scaffold_6:24984797-24984831(-) (11)	NA	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.118491.1.S1_at	A	A1TS	POPTR_0002s17930	POPTR_0002s17930 (9)	scaffold_2:13771920-13772528(-) (9)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT4G00820.1	IQ-domain 17 	LOC_Os08g02250.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g067020.2	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118500.1.S1_at	A	A1TS	POPTR_0019s13490	POPTR_0019s13490 (11)	scaffold_19:14410983-14412151(+) (11)	NA	Q6R2K3	Protein STRUBBELIG-RECEPTOR FAMILY 3	AT4G03390.1	STRUBBELIG-receptor family 3 	LOC_Os02g07960.4	"STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed"	Medtr2g014380.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.118505.1.S1_at	A	A1TS	POPTR_0015s15330	POPTR_0015s15330 (9)	scaffold_15:14648050-14648440(-) (9)	NA	NA	NA	AT2G35150.1	EXORDIUM like 1 	LOC_Os07g31430.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118520.1.S1_s_at	A	A1TS	POPTR_0001s02420	POPTR_0001s02420 (11)	scaffold_1:1869482-1869774(-) (11)	NA	Q9FIQ1	Ubiquitin carboxyl-terminal hydrolase 21	AT5G46740.1	ubiquitin-specific protease 21 	LOC_Os06g08530.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr5g030130.2	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.118525.2.S1_a_at	A	A1TS	POPTR_0010s23920	POPTR_0010s23920 (11)	scaffold_10:20367435-20368369(-) (11)	NA	P43935	Uncharacterized protein HI_0077	AT5G04520.1	Protein of unknown function DUF455 	LOC_Os03g24830.1	"uncharacterized protein HI0077, putative, expressed"	Medtr3g124330.1	Protein of unknown function DUF455 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118533.1.S1_s_at	A	A1TS	POPTR_0001s25500	POPTR_0001s25500 (11)	scaffold_1:24596771-24597244(+) (11)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT5G58970.1	uncoupling protein 2 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11857.1.S1_at	A	A1TS	POPTR_0006s06500	POPTR_0006s06500 (11)	scaffold_6:4678848-4679198(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os06g07230.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr8g121240.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.118574.1.S1_at	A	A1TS	POPTR_0006s08750	POPTR_0006s08750 (11)	scaffold_6:6446284-6446756(+) (11)	NA	P51106	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g53810.1	"leucoanthocyanidin reductase, putative, expressed"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.118574.2.S1_s_at	A	A1TS	POPTR_0002s14890	POPTR_0002s14890 (11)	scaffold_2:11016287-11023577(+) (11)	POPTR_0192s00200 (7)	P51102	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081170.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.11858.1.A1_at	A	A1TS	POPTR_0006s07110	POPTR_0006s07110 (11)	scaffold_6:5111409-5112267(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118580.1.S1_a_at	A	A1TS	POPTR_0001s38250	POPTR_0001s38250 (11)	scaffold_1:37341622-37341722(-) (11)	NA	Q9GZR2	RNA exonuclease 4	AT3G15080.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g28980.2	"exonuclease, putative, expressed"	Medtr2g121500.1	"Zinc finger, C2H2-type; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118580.1.S1_at	A	A1TS	POPTR_0001s38250	POPTR_0001s38250 (11)	scaffold_1:37341372-37342373(-) (11)	NA	Q9GZR2	RNA exonuclease 4	AT3G15080.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os08g28980.2	"exonuclease, putative, expressed"	Medtr2g121500.1	"Zinc finger, C2H2-type; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11859.1.A1_x_at	A	A1TS	POPTR_0006s24790	POPTR_0006s24790 (11)	scaffold_6:23339858-23341976(+) (11)	NA	NA	NA	AT4G29480.1	Mitochondrial ATP synthase subunit G protein 	LOC_Os01g41610.2	"mitochondrial ATP synthase g subunit family protein, putative, expressed"	Medtr4g160610.1	Mitochondrial ATP synthase g subunit 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0000276|""mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.11859.3.A1_a_at	A	A1TS	POPTR_0006s24790	POPTR_0006s24790 (11)	scaffold_6:23339696-23341924(+) (11)	NA	NA	NA	AT4G29480.1	Mitochondrial ATP synthase subunit G protein 	LOC_Os01g41610.2	"mitochondrial ATP synthase g subunit family protein, putative, expressed"	Medtr4g160610.1	Mitochondrial ATP synthase g subunit 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0000276|""mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.11859.4.S1_a_at	A	A1TS	POPTR_0006s24810	POPTR_0006s24810 (10)	scaffold_6:23344878-23347223(+) (10)	NA	NA	NA	AT4G29480.1	Mitochondrial ATP synthase subunit G protein 	LOC_Os05g45740.2	"mitochondrial ATP synthase g subunit family protein, putative, expressed"	Medtr4g160610.1	Mitochondrial ATP synthase g subunit 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0000276|""mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.11859.5.A1_a_at	A	A1TS	POPTR_0006s24810	POPTR_0006s24810 (11)	scaffold_6:23347399-23347592(+) (11)	NA	NA	NA	AT4G29480.1	Mitochondrial ATP synthase subunit G protein 	LOC_Os05g45740.2	"mitochondrial ATP synthase g subunit family protein, putative, expressed"	Medtr4g160610.1	Mitochondrial ATP synthase g subunit 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0000276|""mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)"""
PtpAffx.118595.1.S1_at	A	A1TS	POPTR_0002s19500	POPTR_0002s19500 (11)	scaffold_2:15481745-15482022(+) (11)	NA	NA	NA	AT3G66654.2	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g29390.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118623.1.S1_at	A	A1TS	POPTR_0008s13060	POPTR_0008s13060 (10)	scaffold_8:8514676-8515731(-) (10)	NA	Q88BD4	Phosphomannomutase/phosphoglucomutase	AT1G70820.1	"phosphoglucomutase, putative / glucose phosphomutase, putative "	LOC_Os06g28194.1	expressed protein	Medtr4g114290.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.118649.1.S1_at	A	A1TS	POPTR_0004s09215	POPTR_0004s09215 (9)	scaffold_4:7736150-7736635(+) (10)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118665.1.S1_at	A	A1TS	POPTR_0015s10800	POPTR_0015s10800 (10)	scaffold_15:11594212-11604234(-) (11)	NA	NA	NA	AT5G50410.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g41900.1	expressed protein	Medtr3g150490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118679.1.S1_s_at	A	A2TS	POPTR_0006s24290	POPTR_0006s24300 (11)//POPTR_0006s24290 (11)	scaffold_6:22929339-22929701(+) (11)//scaffold_6:22941449-22941811(+) (11)	NA	NA	NA	AT4G33050.3	calmodulin-binding family protein 	LOC_Os01g38980.2	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118681.1.S1_at	A	A1TS	POPTR_0005s26840	POPTR_0005s26840 (11)	scaffold_5:24705845-24706624(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT4G38430.1	rho guanyl-nucleotide exchange factor 1 	LOC_Os09g37270.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr3g092590.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.118708.1.S1_at	A	A1TS	POPTR_0019s04640	POPTR_0019s04640 (11)	scaffold_19:4809643-4809732(+) (11)	NA	Q9ATM2	Aquaporin SIP1-2	AT3G04090.1	small and basic intrinsic protein 1A 	LOC_Os01g08660.1	"aquaporin protein, putative, expressed"	Medtr7g099920.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118737.1.S1_s_at	A	A1TS	POPTR_0019s08940	POPTR_0019s08940 (11)	scaffold_19:10504577-10505697(+) (11)	NA	Q3THJ3	Probable RNA-binding protein EIF1AD	AT2G40780.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os03g02310.1	"RNA binding protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.118751.1.S1_at	A	A1TS	POPTR_0010s24370	POPTR_0010s24370 (10)	scaffold_10:20613539-20614707(+) (11)	POPTR_0475s00210 (7)	O75351	Vacuolar protein sorting-associated protein 4B	AT2G27600.1	AAA-type ATPase family protein 	LOC_Os01g04814.1	"vacuolar protein sorting-associating protein 4B, putative, expressed"	Medtr4g069940.1	"AAA ATPase, central region; MIT "	NA	GO:0005524|ATP binding	NA
PtpAffx.11878.1.S1_a_at	A	A2TS	POPTR_0005s18430	POPTR_0005s18430 (11)//POPTR_0007s10750 (11)	scaffold_5:16641810-16642046(-) (11)//scaffold_7:10811020-10811268(+) (11)	NA	Q9FH94	Ethylene-responsive transcription factor ERF010	AT5G67190.1	DREB and EAR motif protein 2 	LOC_Os04g55520.1	"AP2 domain containing protein, expressed"	Medtr5g016640.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.11878.2.S1_at	A	A1TS	POPTR_0005s18430	POPTR_0005s18430 (11)	scaffold_5:16641698-16642113(-) (11)	NA	Q9FH94	Ethylene-responsive transcription factor ERF010	AT5G67190.1	DREB and EAR motif protein 2 	LOC_Os04g55520.1	"AP2 domain containing protein, expressed"	Medtr5g016640.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.118792.1.S1_at	A	A1TS	POPTR_0004s01660	POPTR_0004s01660 (10)	scaffold_4:1005586-1005928(-) (10)	NA	Q9ZS97	"UPF0051 protein ABCI8, chloroplastic"	AT4G04770.1	ATP binding cassette protein 1 	LOC_Os01g61400.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr7g029700.1	FeS assembly protein SufB 	GO:0016226|iron-sulfur cluster assembly	GO:0005515|protein binding	NA
PtpAffx.118798.1.S1_at	A	A1TS	POPTR_0015s12100	POPTR_0015s12100 (11)	scaffold_15:12514134-12514594(+) (11)	NA	Q9FLT2	Inositol polyphosphate multikinase beta	AT5G61760.1	inositol polyphosphate kinase 2 beta 	LOC_Os02g32370.1	"inositol hexaphosphate kinase, putative, expressed"	Medtr8g043170.1	Inositol polyphosphate kinase 	NA	GO:0008440|inositol trisphosphate 3-kinase activity	NA
PtpAffx.118799.1.S1_s_at	A	A1TS	POPTR_0016s03170	POPTR_0016s03170 (11)	scaffold_16:1609927-1610482(-) (11)	NA	O22207	Ubiquitin carboxyl-terminal hydrolase 5	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.118825.1.S1_at	A	A1TS	POPTR_0005s08750	POPTR_0005s08750 (10)	scaffold_5:6098802-6099547(+) (10)	NA	Q9SJ12	"Probable ATP synthase 24 kDa subunit, mitochondrial"	AT2G21870.1	copper ion binding;cobalt ion binding;zinc ion binding 	LOC_Os02g03860.1	"mitochondrial ATP synthase precursor, putative, expressed"	Medtr4g141050.1	"Probable ATP synthase 24 kDa subunit, mitochondrial precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118826.1.S1_at	A	A2TS	POPTR_0021s00270	POPTR_0021s00270 (11)//POPTR_0011s00260 (9)	scaffold_11:45426-45859(-) (11)//scaffold_21:61252-61685(-) (11)	NA	NA	NA	AT1G11915.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g25950.1	expressed protein	Medtr8g147140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118841.1.S1_at	A	A1TS	POPTR_0015s13370	POPTR_0015s13370 (11)	scaffold_15:13358189-13358933(-) (11)	NA	Q9XH44	CEN-like protein 1	AT5G62040.1	PEBP (phosphatidylethanolamine-binding protein) family protein 	LOC_Os12g05590.1	"RCN3  Centroradialis-like1 homogous to TFL1  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	AC146807_6.1	Phosphatidylethanolamine-binding protein AC146807.56 102779-100897 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118843.1.S1_at	A	A1TS	POPTR_0007s09720	POPTR_0007s09720 (9)	scaffold_7:9199428-9199908(-) (11)	NA	Q9SXL4	Histidine kinase 1	AT2G17820.1	histidine kinase 1 	LOC_Os06g08450.1	"histidine kinase, putative"	Medtr5g022390.1	Response regulator receiver; Heavy metal sensor kinase 	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.118864.2.A1_at	A	A1TS	POPTR_0001s13180	POPTR_0001s13180 (10)	scaffold_1:10251859-10252681(-) (10)	NA	Q8LL04	RNA polymerase II C-terminal domain phosphatase-like 3	AT2G33540.1	C-terminal domain phosphatase-like 3 	LOC_Os11g31890.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr7g020970.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.118885.1.S1_s_at	A	A1TS	POPTR_0005s17460	POPTR_0005s17460 (11)	scaffold_5:14898598-14899037(+) (11)	NA	Q84W40	RING-H2 finger protein ATL11	AT1G72200.1	RING/U-box superfamily protein 	LOC_Os09g29310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g150140.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118896.1.S1_s_at	A	A1TS	POPTR_1651s00200	POPTR_1651s00200 (11)	scaffold_1651:1517-1678(-) (11)//scaffold_7:2283228-2283380(-) (9)	NA	NA	NA	NA	NA	LOC_Os12g08850.1	expressed protein	Medtr4g142640.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118899.1.S1_at	A	A1TS	POPTR_0003s15490	POPTR_0003s15490 (11)	scaffold_3:15245740-15246344(+) (11)	NA	C0LGQ5	LRR receptor-like serine/threonine-protein kinase GSO1	AT4G20140.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os07g31500.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.1189.1.S1_at	A	A1TS	POPTR_0015s13630	POPTR_0015s13630 (11)	scaffold_15:13496752-13497236(-) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT5G62090.2	SEUSS-like 2 	LOC_Os06g03600.3	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1189.2.A1_s_at	A	A1TS	POPTR_0012s13680	POPTR_0012s13680 (11)	scaffold_12:13723773-13724068(-) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT5G62090.2	SEUSS-like 2 	LOC_Os06g03600.3	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118900.1.S1_at	A	A1TS	POPTR_0002s05310	POPTR_0002s05310 (11)	scaffold_2:3455562-3456100(+) (11)	NA	NA	NA	AT3G63170.1	Chalcone-flavanone isomerase family protein 	LOC_Os07g38390.1	"chalcone isomerase, putative, expressed"	Medtr1g019800.1	hypothetical protein 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
PtpAffx.118902.1.S1_at	A	A1TS	POPTR_0001s32900	POPTR_0001s32900 (11)	scaffold_1:31183417-31185567(-) (11)	NA	P44446	Putative long-chain-fatty-acid--CoA ligase	AT3G23790.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g62850.1	"AMP-binding enzyme, putative, expressed"	Medtr3g104670.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.118907.1.S1_at	A	A1TS	POPTR_0010s10850	POPTR_0010s10850 (11)	scaffold_10:11252331-11253789(+) (11)	POPTR_0008s14320 (6)	Q9ZUM0	Zinc finger CCCH domain-containing protein 17	AT2G02160.1	CCCH-type zinc finger family protein 	LOC_Os04g57600.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119790.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.118908.1.S1_at	A	A1TS	POPTR_0019s11940	POPTR_0019s11940 (11)	scaffold_19:13140875-13142265(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g10180.1	"methyltransferase domain containing protein, putative, expressed"	Medtr4g109580.1	"CMV 1a interacting protein 1, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.118918.1.S1_s_at	A	A1TS	POPTR_0002s02290	POPTR_0002s02290 (11)	scaffold_2:1287229-1287708(-) (11)	NA	Q9LNU6	Pentatricopeptide repeat-containing protein At1g20230	AT1G20230.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os05g30710.1	"pentatricopeptide, putative, expressed"	Medtr5g008630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118921.1.S1_at	A	A1TS	POPTR_0015s08450	POPTR_0015s08450 (11)	scaffold_15:9720537-9721210(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os02g02310.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr8g125320.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.118925.1.S1_at	A	A1MS	POPTR_0003s14230	POPTR_0003s14230 (11)	scaffold_3:14355216-14355390(+) (11)	NA	Q0WVN5	Cellulose synthase-like protein G3	AT4G23990.1	cellulose synthase like G3 	LOC_Os02g49332.1	"CSLE2 - cellulose synthase-like family E, expressed"	Medtr3g079520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.118928.1.S1_at	A	A1TS	POPTR_0012s12960	POPTR_0012s12960 (11)	scaffold_12:13304239-13305623(-) (11)	NA	Q5F389	WW domain-containing oxidoreductase	AT4G23420.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.118931.1.S1_at	A	A1TS	POPTR_0014s07090	POPTR_0014s07090 (11)	scaffold_14:5350194-5350664(-) (11)	NA	P28658	Ataxin-10	AT4G00231.1	ARM repeat superfamily protein 	LOC_Os03g02720.1	expressed protein	Medtr7g083540.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118933.1.S1_s_at	A	A1TS	POPTR_0001s42720	POPTR_0001s42720 (11)	scaffold_1:42752133-42754206(-) (11)	NA	Q9SHI1	"Translation initiation factor IF-2, chloroplastic"	AT1G17220.1	"Translation initiation factor 2, small GTP-binding protein "	LOC_Os05g49970.2	"translation initiation factor IF-2, chloroplast precursor, putative, expressed"	Medtr2g077230.1	"Elongation factor Tu, domain 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0003743|translation initiation factor activity	GO:0005622|intracellular
PtpAffx.118950.1.S1_s_at	A	A1TS	POPTR_0005s12480	POPTR_0005s12480 (10)	scaffold_5:9249612-9249688(+) (10)	NA	Q9C9G6	UPF0195 protein At1g68310	AT3G50845.1	Protein of unknown function (DUF59) 	LOC_Os03g56410.2	expressed protein	Medtr5g020030.1	"UPF0195 protein At3g09380, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118952.1.S1_s_at	A	A1TS	POPTR_0013s10210	POPTR_0013s10210 (11)	scaffold_13:10225512-10226851(+) (11)	NA	Q9SF78	GDSL esterase/lipase At1g71691	AT1G71691.2	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os08g02094.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g013140.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.118954.1.S1_at	A	A1MS	POPTR_0003s15230	POPTR_0003s15230 (11)	scaffold_3:15084134-15084518(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118955.1.S1_s_at	A	A1TS	POPTR_0014s11920	POPTR_0014s11920 (11)	scaffold_14:8826714-8827278(+) (11)	NA	Q71VM4	Importin subunit alpha-1a	AT3G06720.2	importin alpha isoform 1 	LOC_Os01g14950.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.118968.1.S1_at	A	A1MS	POPTR_0015s00860	POPTR_0015s00860 (9)	scaffold_15:501150-501799(-) (10)	NA	NA	NA	AT5G53660.1	growth-regulating factor 7 	LOC_Os04g51190.3	"growth-regulating factor, putative, expressed"	Medtr3g123080.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.11898.1.A1_at	A	A1TS	POPTR_0004s16280	POPTR_0004s16280 (11)	scaffold_4:16724798-16726178(-) (11)	NA	NA	NA	AT4G39235.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g51459.1	conserved hypothetical protein	Medtr3g005030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118991.2.S1_at	A	A1TS	POPTR_0017s08530	POPTR_0017s08530 (10)	scaffold_17:7112001-7113171(-) (10)	NA	NA	NA	AT5G43490.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g63040.1	expressed protein	Medtr3g105200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.118996.1.S1_s_at	A	A1TS	POPTR_0019s05650	POPTR_0019s05650 (11)	scaffold_19:6012236-6013142(-) (11)	NA	Q6MDI2	Polyribonucleotide nucleotidyltransferase	AT3G03710.1	"polyribonucleotide nucleotidyltransferase, putative "	LOC_Os07g07310.1	"polynucleotide phosphorylase, putative, expressed"	Medtr7g103420.1	Polyribonucleotide nucleotidyltransferase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.11902.1.A1_at	A	A1TS	POPTR_0008s03860	POPTR_0008s03860 (9)	scaffold_8:2098323-2098421(+) (9)	NA	Q9GMB0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	AT2G01720.1	Ribophorin I 	LOC_Os05g23600.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed"	Medtr1g120720.1	Ribophorin I 	GO:0006486|protein amino acid glycosylation	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
PtpAffx.119025.1.S1_at	A	A1MS	POPTR_0017s04620	POPTR_0017s04620 (9)	scaffold_17:3538690-3539226(+) (9)	NA	O49453	Uncharacterized protein At4g28440	AT4G28440.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119032.1.S1_s_at	A	A1TS	POPTR_0016s08290	POPTR_0016s08290 (11)	scaffold_16:6099721-6101362(-) (11)	NA	Q9ZUT3	Protein ALUMINUM SENSITIVE 3	AT2G37330.1	aluminum sensitive 3 	LOC_Os05g02750.1	"ABC transporter, membrane-spanning/permease subunit, putative, expressed"	AC235022_6.1	Conserved hypothetical protein 245 AC235022.1 27547-25968 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119058.1.S1_s_at	A	A1TS	POPTR_0006s26440	POPTR_0006s26440 (11)	scaffold_6:24677055-24677472(-) (11)	NA	NA	NA	AT2G25625.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr3g136300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119065.1.S1_at	A	A2TS	POPTR_0002s14860	POPTR_0002s14860 (11)//POPTR_0192s00220 (11)	scaffold_192:7110-15183(-) (11)//scaffold_2:11007453-11008321(+) (11)	NA	P51106	Dihydroflavonol-4-reductase	AT2G45400.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g40440.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr7g081180.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.119068.1.S1_s_at	A	A1TS	POPTR_0006s24840	POPTR_0006s24840 (11)	scaffold_6:23362580-23363551(-) (11)	NA	Q9SZJ5	"Serine hydroxymethyltransferase, mitochondrial"	AT4G32520.2	serine hydroxymethyltransferase 3 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr2g021910.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.119069.1.S1_at	A	A1TS	POPTR_0001s00300	POPTR_0001s00300 (11)	scaffold_1:168134-168628(+) (11)	NA	Q8H038	Xyloglucan galactosyltransferase KATAMARI1 homolog	AT4G22580.1	Exostosin family protein 	LOC_Os10g40559.1	"exostosin family domain containing protein, expressed"	Medtr8g138830.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.11907.1.A1_a_at	A	A1TS	POPTR_0014s10800	POPTR_0014s10800 (11)	scaffold_14:8078038-8078113(-) (11)	NA	O60155	Putative prolyl-tRNA synthetase C19C7.06	AT3G62120.2	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os12g25710.3	"bifunctional aminoacyl-tRNA synthetase, putative, expressed"	Medtr7g134100.1	"Prolyl-tRNA synthetase, bacterial "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.11907.1.A1_s_at	A	A2TS	POPTR_0002s18810	POPTR_0002s18810 (11)//POPTR_0014s10800 (11)	scaffold_14:8078708-8079346(-) (11)//scaffold_2:14703602-14704247(-) (11)	NA	O60155	Putative prolyl-tRNA synthetase C19C7.06	AT3G62120.2	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os12g25710.3	"bifunctional aminoacyl-tRNA synthetase, putative, expressed"	Medtr7g134100.1	"Prolyl-tRNA synthetase, bacterial "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.119074.1.S1_at	A	A2TS	POPTR_0001s22090	POPTR_0135s00200 (11)//POPTR_0001s22090 (11)	scaffold_1:20708404-20708721(+) (11)//scaffold_135:522-839(+) (11)	POPTR_0135s00220 (7)	Q5RBU7	Lysosomal Pro-X carboxypeptidase	AT5G22860.1	Serine carboxypeptidase S28 family protein 	LOC_Os11g05760.1	"OsProCP5 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.119076.1.S1_at	A	A1TS	POPTR_0014s08110	POPTR_0014s08110 (9)	scaffold_14:6020883-6021801(+) (9)	NA	Q8TCT7	Signal peptide peptidase-like 2B	AT1G01650.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 4 	LOC_Os06g51430.1	"signal peptide peptidase-like 2B, putative, expressed"	Medtr8g031970.1	"Protease-associated PA; Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.11908.1.S1_at	A	A1TS	POPTR_0010s00440	POPTR_0010s00440 (9)	scaffold_10:225538-226342(+) (9)	NA	P91622	"[Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial"	AT3G06483.1	pyruvate dehydrogenase kinase 	LOC_Os07g44330.2	"kinase, putative, expressed"	Medtr2g052960.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.11908.2.S1_a_at	A	A1TS	POPTR_0010s00440	POPTR_0010s00440 (11)	scaffold_10:224404-224808(+) (11)	NA	P91622	"[Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial"	AT3G06483.1	pyruvate dehydrogenase kinase 	LOC_Os07g44330.2	"kinase, putative, expressed"	Medtr2g052960.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.1191.1.A1_at	A	A1MS	POPTR_0018s11430	POPTR_0018s11430 (11)	scaffold_18:12167361-12167882(-) (11)	NA	NA	NA	AT5G57910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16930.1	expressed protein	Medtr8g145180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119100.1.A1_at	A	A1TA	POPTR_0003s04300	POPTR_0003s04300 (10)	scaffold_3:5009788-5010004(-) (11)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11912.1.S1_at	A	A1TS	POPTR_0001s37760	POPTR_0001s37760 (11)	scaffold_1:36841430-36842329(-) (11)	NA	A7SXK3	Transmembrane emp24 domain-containing protein	AT3G07680.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os09g32968.2	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr5g105940.3	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.119122.1.A1_at	A	A1TS	POPTR_0009s13860	POPTR_0009s13860 (11)	scaffold_9:10955998-10956672(-) (11)	NA	Q9ZVX2	Transcription factor ABORTED MICROSPORES	AT2G16910.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02820.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g096910.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.119147.1.A1_at	A	A1TS	POPTR_0002s17390	POPTR_0002s17390 (11)	scaffold_2:13148253-13148802(-) (11)	NA	NA	NA	AT2G46550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g30930.1	expressed protein	Medtr3g123640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11916.1.S1_a_at	A	A2TS	POPTR_0017s07160	POPTR_0017s07160 (11)//POPTR_0017s07200 (10)	scaffold_17:5548176-5548620(-) (11)//scaffold_17:5584675-5585119(-) (10)	NA	O82794	MADS-box protein AGL24	AT4G24540.1	AGAMOUS-like 24 	LOC_Os03g08754.2	"OsMADS47 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11916.2.S1_a_at	A	A1TS	POPTR_0007s03260	POPTR_0007s03260 (11)	scaffold_7:1869213-1869261(-) (11)	NA	Q9FUY6	MADS-box protein JOINTLESS	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os02g52340.1	"OsMADS22 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.11916.3.S1_at	A	A1MS	POPTR_0017s07160	POPTR_0017s07160 (11)	scaffold_17:5548246-5549037(-) (11)	POPTR_0017s07200 (8)	O82794	MADS-box protein AGL24	AT4G24540.1	AGAMOUS-like 24 	LOC_Os03g08754.2	"OsMADS47 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.119186.1.A1_at	A	A1MS	POPTR_0002s20170	POPTR_0002s20170 (11)	scaffold_2:16114330-16114801(-) (11)	NA	NA	NA	AT4G02210.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). 	LOC_Os08g25050.1	"PIF-like orf1, putative, expressed"	Medtr5g022470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119193.1.A1_at	A	A1TS	POPTR_0015s01450	POPTR_0015s01450 (11)	scaffold_15:890693-891039(+) (11)	NA	Q8LDQ4	PP2A regulatory subunit TAP46	AT5G53000.1	2A phosphatase associated protein of 46 kD 	LOC_Os12g04290.1	"PP2A regulatory subunit TAP46, putative, expressed"	Medtr3g123750.1	TAP42-like protein 	GO:0009607|response to biotic stimulus||GO:0009966|regulation of signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling||GO:0023051|regulation of signaling process	NA	NA
PtpAffx.1192.1.A1_at	A	A1TS	POPTR_0009s05800	POPTR_0009s05800 (11)	scaffold_9:5796397-5797347(-) (11)	NA	Q05AL1	Armadillo repeat-containing protein 8	AT1G51350.1	ARM repeat superfamily protein 	LOC_Os11g41990.1	"armadillo/beta-catenin-like repeat family protein, expressed"	Medtr5g104530.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11920.1.A1_at	A	A1TS	POPTR_0003s17220	POPTR_0003s17220 (11)	scaffold_3:16656573-16657651(+) (11)	NA	Q54GB2	CTD small phosphatase-like protein 2	AT5G11860.4	SCP1-like small phosphatase 5 	LOC_Os07g10690.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr3g103740.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119259.1.A1_at	A	A1TS	POPTR_0018s12250	POPTR_0018s12250 (11)	scaffold_18:12789028-12789601(+) (11)	NA	NA	NA	NA	NA	LOC_Os09g38450.1	expressed protein	Medtr8g122590.1	hypothetical protein 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.119285.1.S1_s_at	A	A1TS	POPTR_0002s07890	POPTR_0002s07890 (11)	scaffold_2:5423411-5423590(-) (11)	NA	Q9C5W3	"NAD kinase 2, chloroplastic"	AT1G21640.1	NAD kinase 2 	LOC_Os11g08670.1	"NAD kinase, putative, expressed"	Medtr4g104490.1	ATP-NAD/AcoX kinase 	GO:0008152|metabolic process	GO:0003951|NAD+ kinase activity	NA
PtpAffx.1193.1.S1_at	A	A1TS	POPTR_0007s13720	POPTR_0007s13720 (10)	scaffold_7:13784369-13784669(+) (10)	NA	Q42600	Cytochrome P450 84A1	AT4G36220.1	ferulic acid 5-hydroxylase 1 	LOC_Os10g36848.1	"cytochrome P450, putative, expressed"	Medtr5g021320.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.119307.1.S1_at	A	A1TS	POPTR_0015s03540	POPTR_0015s03540 (9)	scaffold_15:3191165-3191517(+) (9)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119343.1.A1_a_at	A	A1TS	POPTR_0005s26390	POPTR_0005s26390 (11)	scaffold_5:24433941-24434159(-) (11)	NA	Q96MB7	Putative nuclease HARBI1	AT4G29780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os01g40070.1	expressed protein	Medtr1g019300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119343.2.A1_a_at	A	A1TS	POPTR_0018s07790	POPTR_0018s07790 (11)	scaffold_18:8591154-8591618(-) (11)	NA	Q96MB7	Putative nuclease HARBI1	AT4G29780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os01g40070.1	expressed protein	Medtr1g019300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119347.1.S1_at	A	A1TS	POPTR_0008s06790	POPTR_0008s06790 (11)	scaffold_8:4076772-4077262(+) (11)	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g093610.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.119354.1.A1_at	A	A1TS	POPTR_0012s12850	POPTR_0012s12850 (11)	scaffold_12:13240093-13240168(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT4G25640.1	detoxifying efflux carrier 35 	LOC_Os08g44870.1	"MATE efflux family protein, putative, expressed"	Medtr1g126620.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.119354.2.A1_s_at	A	A1TS	POPTR_0015s12780	POPTR_0015s12780 (11)	scaffold_15:13006064-13008235(+) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT4G25640.1	detoxifying efflux carrier 35 	LOC_Os08g44870.1	"MATE efflux family protein, putative, expressed"	Medtr1g126620.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.11937.1.A1_s_at	A	A1TS	POPTR_0002s09200	POPTR_0002s09200 (10)	scaffold_2:6517545-6517704(+) (10)	NA	NA	NA	AT5G02130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g38330.1	"NDP1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1194.1.S1_a_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20856702-20856784(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.1194.1.S1_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20855788-20856685(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.1194.2.S1_s_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20856775-20857175(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.11940.1.A1_a_at	A	A1TS	POPTR_0002s14920	POPTR_0002s14920 (11)	scaffold_2:11043984-11044503(+) (11)	NA	NA	NA	AT3G60810.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1499 (InterPro:IPR010865); Has 444 Blast hits to 444 proteins in 143 species: Archae - 0; Bacteria - 268; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). 	LOC_Os03g64140.1	expressed protein	Medtr4g024760.1	Protein of unknown function DUF1499 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119400.1.A1_at	A	A1TS	POPTR_0018s07590	POPTR_0018s07590 (9)	scaffold_18:8030798-8031213(-) (9)	NA	Q5R7W3	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	AT4G33060.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g40050.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.11941.1.A1_at	A	A1MA	POPTR_0019s14530	POPTR_0019s14530 (10)	scaffold_19:15300585-15301062(-) (10)	NA	Q56YT0	Laccase-3	AT2G30210.1	laccase 3 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr5g081380.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.119412.1.A1_at	A	A1TS	POPTR_0016s03500	POPTR_0016s03500 (9)	scaffold_16:1869116-1869908(-) (9)	NA	Q5ZJQ8	Ubiquitin-associated domain-containing protein 2	AT2G41160.1	Ubiquitin-associated (UBA) protein 	LOC_Os01g16330.1	"OsRhmbd2 - Putative Rhomboid homologue, expressed"	Medtr7g106540.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119413.1.A1_at	A	A1TS	POPTR_0001s16780	POPTR_0001s16780 (11)	scaffold_1:13581675-13582077(+) (11)	NA	Q9LNR3	"Lipoxygenase 3, chloroplastic"	AT1G17420.1	lipoxygenase 3 	LOC_Os03g08220.1	"lipoxygenase protein, putative, expressed"	Medtr8g025120.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.119425.1.A1_s_at	A	A1TS	POPTR_0012s00200	POPTR_0012s00200 (10)	scaffold_12:3059-3286(+) (11)	NA	Q9URX1	UNC93-like protein C922.05c	AT1G18010.1	Major facilitator superfamily protein 	LOC_Os04g01520.1	expressed protein	Medtr3g122110.1	"Protein of unknown function DUF895, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11944.1.A1_at	A	A1MS	POPTR_0016s06240	POPTR_0016s06240 (10)	scaffold_16:4182178-4182818(-) (10)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT1G55310.2	SC35-like splicing factor 33 	LOC_Os03g25770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g105670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.119469.1.S1_at	A	A1TS	POPTR_0015s00580	POPTR_0015s00580 (11)	scaffold_15:352566-352805(-) (11)	NA	A7QEU4	Peroxidase 5	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os03g02920.1	"peroxidase precursor, putative, expressed"	Medtr3g122440.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.11947.1.S1_at	A	A1TS	POPTR_0019s04040	POPTR_0019s04040 (11)	scaffold_19:4134138-4134398(-) (11)	NA	NA	NA	AT5G37360.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g57030.1	expressed protein	Medtr1g093310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119471.1.A1_s_at	A	A1TS	POPTR_0013s13910	POPTR_0013s13910 (10)	scaffold_13:14230695-14231257(-) (10)	NA	Q9SDT1	"Protochlorophyllide reductase, chloroplastic"	AT1G03630.1	protochlorophyllide oxidoreductase C 	LOC_Os10g35370.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119473.1.A1_at	A	A2TS	POPTR_0014s05990	POPTR_0176s00200 (11)//POPTR_0014s05990 (11)	scaffold_14:4486183-4486619(-) (11)//scaffold_176:1912-2348(-) (11)	NA	NA	NA	AT3G60590.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g45200.2	"DNA binding protein, putative, expressed"	Medtr4g028670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119474.1.A1_at	A	A1TS	POPTR_0011s02450	POPTR_0011s02450 (11)	scaffold_11:2340248-2340726(+) (11)	NA	Q9FIX3	Pentatricopeptide repeat-containing protein At5g39710	AT1G30290.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g42120.1	PPR repeat containing protein	Medtr2g022110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119477.1.A1_at	A	A1TS	POPTR_0008s03980	POPTR_0008s03980 (10)	scaffold_8:2195701-2196158(+) (10)	NA	Q99685	Monoglyceride lipase	AT5G19290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g21560.1	"esterase/lipase/thioesterase family protein, putative, expressed"	Medtr1g120940.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119499.2.A1_s_at	A	A1TS	POPTR_0003s01100	POPTR_0003s01100 (11)	scaffold_3:958261-958442(-) (11)	NA	Q9ET30	Transmembrane 9 superfamily member 3	AT1G10950.1	transmembrane nine 1 	LOC_Os11g07910.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr4g137290.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.1195.1.S1_at	A	A1TS	POPTR_0003s19420	POPTR_0003s19420 (10)	scaffold_3:18153135-18153652(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g043570.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119501.1.A1_s_at	A	A1MS	POPTR_0009s16170	POPTR_0009s16170 (11)	scaffold_9:12357599-12357649(+) (11)	NA	Q08BW0	OTU domain-containing protein 5-A	AT2G27350.2	OTU-like cysteine protease family protein 	LOC_Os04g33780.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr2g107500.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119508.1.A1_at	A	A1TS	POPTR_0003s07030	POPTR_0003s07030 (9)	scaffold_3:8635903-8636441(-) (9)	NA	Q43111	Pectinesterase 3	AT1G53840.1	pectin methylesterase 1 	LOC_Os09g26360.1	"pectinesterase, putative, expressed"	Medtr8g026630.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.119533.1.S1_s_at	A	A2TS	POPTR_0008s19790	POPTR_0010s04560 (11)//POPTR_0008s19790 (11)	scaffold_10:5661817-5662952(-) (11)//scaffold_8:13649388-13650551(+) (11)	NA	Q8VXV4	Chaperone protein dnaJ 16	AT1G24120.1	ARG1-like 1 	LOC_Os02g50760.2	"heat shock protein DnaJ, putative, expressed"	Medtr5g036860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.119534.1.S1_at	A	A1TS	POPTR_0001s35190	POPTR_0001s35190 (11)	scaffold_1:33485965-33486517(-) (11)	NA	Q9FUZ2	"Peptide deformylase 1B, chloroplastic"	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
PtpAffx.119536.1.S1_at	A	A1TS	POPTR_0014s08940	POPTR_0014s08940 (9)	scaffold_14:6611782-6613330(+) (9)	NA	Q6TDP4	Kelch-like protein 17	AT3G61600.2	POZ/BTB containin G-protein 1 	LOC_Os06g31100.1	"E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.119547.1.S1_s_at	A	A2TS	POPTR_0006s21080	POPTR_0006s21080 (11)//POPTR_0016s06190 (11)	scaffold_16:4141609-4142230(+) (11)//scaffold_6:20179195-20179849(+) (11)	NA	P48578	Serine/threonine-protein phosphatase PP2A-3 catalytic subunit	AT3G58500.1	protein phosphatase 2A-4 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	AC235488_34.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase AC235488.1 160871-167050 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.119564.1.S1_at	A	A1TS	POPTR_0004s14200	POPTR_0004s14200 (11)	scaffold_4:14684919-14685441(+) (11)	NA	Q6IDS6	E3 ubiquitin-protein ligase makorin	AT3G08505.1	zinc finger (CCCH-type/C3HC4-type RING finger) family protein 	LOC_Os06g21390.2	"Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed"	Medtr3g030250.1	"Zinc finger, CCCH-type; Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.11958.1.A1_at	A	A1TS	POPTR_0005s15580	POPTR_0005s15580 (11)	scaffold_5:12210941-12211111(-) (11)	NA	Q9ZNS1	40S ribosomal protein S7	AT3G02560.2	Ribosomal protein S7e family protein 	LOC_Os03g18580.1	"40S ribosomal protein S7, putative"	Medtr6g022820.1	Ribosomal protein S7E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.11958.2.A1_s_at	A	A1TS	POPTR_0006s08820	POPTR_0006s08820 (11)	scaffold_6:6495812-6496285(+) (11)	NA	Q9ZNS1	40S ribosomal protein S7	AT3G02560.2	Ribosomal protein S7e family protein 	LOC_Os05g27940.1	"40S ribosomal protein S7, putative, expressed"	Medtr6g022820.1	Ribosomal protein S7E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.119583.1.S1_s_at	A	A1TS	POPTR_0009s10000	POPTR_0009s10000 (11)	scaffold_9:8712443-8712733(-) (11)	NA	Q00874	DNA-damage-repair/toleration protein DRT100	AT2G15320.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g43250.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr5g021240.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.11959.1.A1_at	A	A1TS	POPTR_0015s07820	POPTR_0015s07820 (11)	scaffold_15:9113395-9114036(+) (11)	NA	NA	NA	AT1G74780.1	Nodulin-like / Major Facilitator Superfamily protein 	LOC_Os12g44180.1	"nodulin, putative, expressed"	Medtr2g121680.1	Nodulin-like; Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1196.1.S1_at	A	A1TS	POPTR_0002s04010	POPTR_0002s04010 (11)	scaffold_2:2515903-2516249(-) (11)	NA	Q8LDC8	Ethylene-responsive transcription factor 1B	AT3G23240.1	ethylene response factor 1 	LOC_Os03g64260.1	"AP2 domain containing protein, expressed"	Medtr4g072870.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.119610.1.S1_at	A	A1TS	POPTR_0002s25880	POPTR_0002s25880 (11)	scaffold_2:22896686-22897616(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.11962.1.A1_at	A	A1TS	POPTR_0006s12030	POPTR_0006s12030 (10)	scaffold_6:9197138-9197556(-) (10)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT2G36670.2	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11962.2.A1_at	A	A1MS	POPTR_0006s12030	POPTR_0006s12030 (10)	scaffold_6:9200082-9201040(-) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT2G36670.2	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119636.1.S1_at	A	A1TS	POPTR_0019s08410	POPTR_0019s08410 (11)	scaffold_19:9939001-9939703(-) (11)	NA	O36015	Putative ribosomal RNA methyltransferase C4F10.03c	AT5G01230.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g49140.1	"ribosomal RNA large subunit methyltransferase J, putative, expressed"	Medtr2g015180.1	Ribosomal RNA methyltransferase RrmJ/FtsJ 	GO:0032259|methylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0008168|methyltransferase activity	NA
PtpAffx.119641.1.S1_at	A	A1TS	POPTR_0003s12720	POPTR_0003s12720 (11)	scaffold_3:13221798-13222243(-) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT4G11570.2	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os09g39560.1	"genetic modifier, putative, expressed"	Medtr4g149420.1	Histidine acid phosphatase; Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.11966.1.A1_at	A	A1TS	POPTR_0018s13100	POPTR_0018s13100 (11)	scaffold_18:13548437-13548993(-) (11)	NA	NA	NA	AT3G15760.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52565.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g120460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119663.1.S1_at	A	A1TS	POPTR_0016s12850	POPTR_0016s12850 (11)	scaffold_16:12209542-12210171(+) (11)	NA	Q9LFG2	"Diaminopimelate epimerase, chloroplastic"	AT3G53580.1	diaminopimelate epimerase family protein 	LOC_Os12g37960.2	"diaminopimelate epimerase, chloroplast precursor, putative, expressed"	Medtr7g077770.1	Diaminopimelate epimerase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009089|lysine biosynthetic process via diaminopimelate	GO:0008837|diaminopimelate epimerase activity	GO:0005737|cytoplasm
PtpAffx.11967.1.S1_s_at	A	A1TS	POPTR_0006s14220	POPTR_0006s14220 (11)	scaffold_6:11539169-11539258(+) (11)	NA	NA	NA	AT1G19130.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). "	LOC_Os08g35480.1	"cupin superfamily protein, putative, expressed"	Medtr8g132610.2	"Chain G, X-Ray Crystal Structure Of Protein Q8u9w0 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11967.2.S1_at	A	A1MS	POPTR_0006s14220	POPTR_0006s14220 (11)	scaffold_6:11538220-11539329(+) (11)	NA	NA	NA	AT1G19130.1	"CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF985 (InterPro:IPR009327), RmlC-like jelly roll fold (InterPro:IPR014710); Has 1465 Blast hits to 1465 proteins in 584 species: Archae - 10; Bacteria - 1038; Metazoa - 19; Fungi - 43; Plants - 51; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). "	LOC_Os08g35480.1	"cupin superfamily protein, putative, expressed"	Medtr8g132610.2	"Chain G, X-Ray Crystal Structure Of Protein Q8u9w0 From Agrobacterium Tumefaciens. Northeast Structural Genomics Consortium Target Atr55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119684.1.S1_at	A	A1TS	POPTR_0002s20660	POPTR_0002s20660 (11)	scaffold_2:16737257-16737476(+) (11)	NA	Q8LEA8	Phytochrome A-associated F-box protein	AT4G02440.1	F-box family protein 	LOC_Os05g30190.1	"phytochrome A-associated F-box protein, putative, expressed"	Medtr8g068260.1	"Phytochrome A-associated F-box protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1197.1.S1_a_at	A	A2TS	POPTR_0008s02700	POPTR_0010s23990 (11)//POPTR_0008s02700 (11)	scaffold_10:20403682-20403721(-) (11)//scaffold_8:1367935-1367974(+) (11)	NA	NA	NA	AT5G04550.1	Protein of unknown function (DUF668) 	LOC_Os12g05180.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr3g124300.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1197.1.S1_at	A	A1TS	POPTR_0010s23990	POPTR_0010s23990 (11)	scaffold_10:20403280-20403675(-) (11)	NA	NA	NA	AT5G04550.1	Protein of unknown function (DUF668) 	LOC_Os12g05180.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr3g124300.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1197.2.S1_at	A	A1TS	POPTR_0008s02700	POPTR_0008s02700 (11)	scaffold_8:1367868-1368415(+) (11)	NA	NA	NA	AT5G04550.1	Protein of unknown function (DUF668) 	LOC_Os12g05180.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr3g124300.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1197.3.S1_at	A	A1TS	POPTR_0010s23990	POPTR_0010s23990 (11)	scaffold_10:20404641-20404820(-) (11)	NA	NA	NA	AT5G04550.1	Protein of unknown function (DUF668) 	LOC_Os12g05180.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr3g124300.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11971.1.S1_at	A	A1TS	POPTR_0003s11820	POPTR_0003s11820 (11)	scaffold_3:12579117-12580691(+) (11)	NA	Q9SZ63	"Nudix hydrolase 14, chloroplastic"	AT4G11980.1	nudix hydrolase homolog 14 	LOC_Os06g03910.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g106420.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.119715.1.S1_at	A	A1TS	POPTR_0009s02220	POPTR_0009s02220 (9)	scaffold_9:2948796-2950139(+) (9)	NA	Q9C5J8	"Outer envelope protein of 80 kDa, chloroplastic"	AT3G44160.1	Outer membrane OMP85 family protein 	LOC_Os05g43470.1	"outer membrane protein, OMP85 family, putative, expressed"	Medtr2g104800.1	Bacterial surface antigen (D15) 	NA	NA	GO:0019867|outer membrane
PtpAffx.119736.1.S1_s_at	A	A1TS	POPTR_0010s16420	POPTR_0010s16420 (11)	scaffold_10:15395094-15396085(-) (11)	NA	Q8RU27	"Alpha-1,4-glucan-protein synthase [UDP-forming] 2"	AT3G08900.1	reversibly glycosylated polypeptide 3 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
PtpAffx.119759.1.S1_s_at	A	A1TS	POPTR_0017s05500	POPTR_0017s05500 (11)	scaffold_17:4356364-4357698(+) (11)	NA	Q8LDW8	"Probable hydroxyacylglutathione hydrolase 2, chloroplast"	AT1G06130.2	glyoxalase 2-4 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119791.1.S1_s_at	A	A1TS	POPTR_0013s15070	POPTR_0013s15070 (11)	scaffold_13:15123867-15125639(+) (11)	NA	P35559	Insulin-degrading enzyme	AT1G06900.1	Insulinase (Peptidase family M16) family protein 	LOC_Os03g21810.1	"insulin-degrading enzyme, putative, expressed"	Medtr5g102730.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1198.1.S1_at	A	A1TS	POPTR_0009s05780	POPTR_0009s05780 (9)	scaffold_9:5790294-5790808(-) (9)	NA	Q60HC3	Heterogeneous nuclear ribonucleoprotein F	AT3G20890.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g03890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g080760.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1198.2.S1_at	A	A1TS	POPTR_0001s26520	POPTR_0001s26520 (11)	scaffold_1:25512783-25513183(-) (11)	NA	Q60HC3	Heterogeneous nuclear ribonucleoprotein F	AT3G20890.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g03890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g080760.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.11980.1.A1_at	A	A1TS	POPTR_0001s33350	POPTR_0001s33350 (11)	scaffold_1:31545190-31546006(+) (11)	NA	Q9LSD8	Membrane-anchored ubiquitin-fold protein 4	AT3G26980.1	membrane-anchored ubiquitin-fold protein 4 precursor 	LOC_Os04g32270.1	"membrane-anchored ubiquitin-fold protein, putative, expressed"	Medtr7g148240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119807.1.S1_a_at	A	A1TS	POPTR_0015s04670	POPTR_0015s04670 (11)	scaffold_15:4888292-4888931(+) (11)	NA	O35075	Down syndrome critical region protein 3 homolog	AT1G48550.1	Vacuolar protein sorting-associated protein 26 	NA	NA	Medtr6g083380.1	Vacuolar protein sorting-associated protein 26 	GO:0007034|vacuolar transport	NA	GO:0030904|retromer complex
PtpAffx.119811.1.S1_at	A	A1MS	POPTR_0002s05820	POPTR_0002s05820 (10)	scaffold_2:3824972-3826457(+) (10)	NA	Q9SK55	NAC domain-containing protein 42	AT2G43000.1	NAC domain containing protein 42 	LOC_Os03g56580.1	"no apical meristem protein, putative, expressed"	Medtr5g098180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.119811.1.S1_s_at	A	A1TS	POPTR_0002s05820	POPTR_0002s05820 (11)	scaffold_2:3824995-3826373(+) (11)	NA	Q9SK55	NAC domain-containing protein 42	AT2G43000.1	NAC domain containing protein 42 	LOC_Os03g56580.1	"no apical meristem protein, putative, expressed"	Medtr5g098180.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.119838.1.S1_a_at	A	A1TS	POPTR_0018s09890	POPTR_0018s09890 (9)	scaffold_18:10937664-10937699(-) (9)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os08g12430.1	"VERNALIZATION-INSENSITIVE, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119838.1.S1_at	A	A1TS	POPTR_0018s09890	POPTR_0018s09890 (11)	scaffold_18:10937496-10937762(-) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT4G30200.3	vernalization5/VIN3-like 	LOC_Os08g12430.1	"VERNALIZATION-INSENSITIVE, putative, expressed"	Medtr8g129220.1	"VIL2 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11984.1.S1_a_at	A	A1TS	POPTR_0006s22250	POPTR_0006s22250 (11)	scaffold_6:21294414-21298527(-) (11)	NA	NA	NA	AT5G22280.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44280.1); Has 82 Blast hits to 82 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g33290.2	expressed protein	Medtr2g107420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119859.1.S1_at	A	A1MS	POPTR_0003s03040	POPTR_0003s03040 (9)	scaffold_3:3373445-3373688(-) (9)	NA	Q5QMN3	DEAD-box ATP-dependent RNA helicase 20	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os01g10050.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.119859.1.S1_s_at	A	A1TS	POPTR_0003s03040	POPTR_0003s03040 (11)	scaffold_3:3371420-3373648(-) (11)	NA	Q5QMN3	DEAD-box ATP-dependent RNA helicase 20	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os01g10050.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g121440.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.1199.1.A1_at	A	A1TS	POPTR_0010s13610	POPTR_0010s13610 (11)	scaffold_10:13417059-13417850(-) (11)	NA	Q84L31	Putative DNA repair protein RAD23-3	AT3G02540.1	Rad23 UV excision repair protein family 	LOC_Os09g24200.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
PtpAffx.11991.2.S1_a_at	A	A1TS	POPTR_0013s04000	POPTR_0013s04000 (9)	scaffold_13:2626013-2626045(+) (9)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.11991.2.S1_s_at	A	A1TS	POPTR_0013s04000	POPTR_0013s04000 (11)	scaffold_13:2625628-2625810(+) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.119912.1.S1_at	A	A1TS	POPTR_0004s17790	POPTR_0004s17790 (11)	scaffold_4:17836144-17837149(-) (11)	NA	Q86W50	Putative methyltransferase METT10D	AT2G21070.3	methyltransferases 	LOC_Os02g02880.1	expressed protein	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.119923.1.S1_s_at	A	A3TS	POPTR_0001s33820	POPTR_0006s06180 (11)//POPTR_0001s33820 (11)//POPTR_0025s00560 (11)	scaffold_1:31981738-31981772(-) (11)//scaffold_25:252516-252550(-) (11)//scaffold_6:4394689-4394723(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.2	Inorganic H pyrophosphatase family protein 	LOC_Os06g43660.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119936.1.S1_at	A	A1TS	POPTR_0009s07950	POPTR_0009s07950 (11)	scaffold_9:7357864-7359702(-) (11)	NA	P93028	Ubiquitin-activating enzyme E1 1	AT2G30110.1	ubiquitin-activating enzyme 1 	LOC_Os11g01510.3	"ubiquitin-activating enzyme, putative, expressed"	Medtr5g080760.1	"Ubiquitin-activating enzyme, E1; Lipase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.11994.1.A1_at	A	A1TS	POPTR_0008s12880	POPTR_0008s12880 (11)	scaffold_8:8378632-8378912(+) (11)	NA	NA	NA	AT1G14990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g42120.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11994.3.A1_at	A	A1TS	POPTR_0010s12250	POPTR_0010s12250 (11)	scaffold_10:12299794-12301217(-) (11)	NA	NA	NA	AT1G14990.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g42120.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119949.1.S1_at	A	A1TS	POPTR_0001s24690	POPTR_0001s24690 (11)	scaffold_1:23942947-23943369(+) (11)	NA	NA	NA	AT3G46580.1	methyl-CPG-binding domain protein 5 	NA	NA	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.119949.2.S1_a_at	A	A1TS	POPTR_0001s24690	POPTR_0001s24690 (11)	scaffold_1:23940476-23943128(+) (11)	NA	NA	NA	AT3G46580.1	methyl-CPG-binding domain protein 5 	NA	NA	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.119955.1.S1_at	A	A1TS	POPTR_0007s06900	POPTR_0007s06900 (11)	scaffold_7:5214270-5214709(+) (11)	POPTR_0005s08840 (7)	B9H5L9	"Lipoyl synthase, mitochondrial"	AT2G20860.1	lipoic acid synthase 1 	LOC_Os04g38330.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.119956.1.S1_at	A	A1TS	POPTR_0009s08410	POPTR_0009s08410 (11)	scaffold_9:7708611-7708932(-) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.119956.1.S1_s_at	A	A1TS	POPTR_0009s08410	POPTR_0009s08410 (11)	scaffold_9:7708471-7708584(-) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.119957.1.S1_at	A	A1TS	POPTR_0005s20560	POPTR_0005s20560 (9)	scaffold_5:19617682-19617919(+) (10)	NA	A9PJQ8	"NAD(P)H-quinone oxidoreductase subunit M, chloroplastic"	AT4G37925.1	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex 	LOC_Os04g45600.1	"NDH-M H PLASTOQUINONE DEHY, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	"GO:0016655|""oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor"""	NA
PtpAffx.119957.1.S1_s_at	A	A1TS	POPTR_0005s20560	POPTR_0005s20560 (11)	scaffold_5:19617946-19618765(+) (11)	NA	A9PJQ8	"NAD(P)H-quinone oxidoreductase subunit M, chloroplastic"	AT4G37925.1	subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex 	LOC_Os04g45600.1	"NDH-M H PLASTOQUINONE DEHY, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	"GO:0016655|""oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor"""	NA
PtpAffx.119964.1.S1_s_at	A	A1TS	POPTR_0006s02650	POPTR_0006s02650 (11)	scaffold_6:1691516-1691857(+) (11)	NA	Q14103	Heterogeneous nuclear ribonucleoprotein D0	AT2G41060.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g54440.3	"RNA binding protein, putative, expressed"	Medtr7g104960.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.119965.1.S1_at	A	A1TS	POPTR_0010s06070	POPTR_0010s06070 (11)	scaffold_10:7499571-7500077(-) (11)	NA	Q8YTC2	Uncharacterized WD repeat-containing protein alr2800	AT1G24530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g50740.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr5g037080.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119968.1.S1_at	A	A1MS	POPTR_0013s15730	POPTR_0013s15730 (11)	scaffold_13:15638090-15638290(-) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT5G10860.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.4	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119968.1.S1_s_at	A	A1TS	POPTR_0013s15730	POPTR_0013s15730 (11)	scaffold_13:15637484-15638141(-) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT5G10860.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.4	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11997.1.A1_at	A	A1TS	POPTR_0002s11960	POPTR_0002s11960 (11)	scaffold_2:8862213-8862415(+) (11)	NA	O22193	U-box domain-containing protein 4	AT3G01400.1	ARM repeat superfamily protein 	LOC_Os03g32100.1	"spotted leaf 11, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.119972.1.A1_at	A	A1TS	POPTR_0012s14040	POPTR_0012s14040 (11)	scaffold_12:14035333-14035700(+) (11)	NA	Q39111	Gibberellin 20 oxidase 2	AT5G51810.1	gibberellin 20 oxidase 2 	LOC_Os03g63970.1	"gibberellin 20 oxidase 1, putative, expressed"	Medtr1g129980.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.119978.1.S1_s_at	A	A1TS	POPTR_0003s07950	POPTR_0003s07950 (11)	scaffold_3:9442946-9444370(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.11998.1.A1_at	A	A1TS	POPTR_0002s09820	POPTR_0002s09820 (11)	scaffold_2:7030912-7031347(-) (11)	NA	Q9C9Q8	Probable pectin methyltransferase QUA2	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr5g072950.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.119994.1.S1_a_at	A	A2TS	POPTR_0002s15070	POPTR_0014s06730 (11)//POPTR_0002s15070 (11)	scaffold_14:5092921-5093337(-) (11)//scaffold_2:11176210-11176627(-) (11)	NA	Q5KHA8	Peptidyl-prolyl cis-trans isomerase-like 3	AT1G01940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os06g04000.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	AC233070_2.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type AC233070.4 3910-1563 F EGN_Mt090430 200"	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.119994.1.S1_at	A	A1TS	POPTR_0014s06730	POPTR_0014s06730 (9)	scaffold_14:5092681-5093298(-) (9)	NA	Q5KHA8	Peptidyl-prolyl cis-trans isomerase-like 3	AT1G01940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os06g04000.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	AC233070_2.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type AC233070.4 3910-1563 F EGN_Mt090430 200"	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.119994.2.S1_at	A	A1TS	POPTR_0002s15070	POPTR_0002s15070 (11)	scaffold_2:11176543-11177615(-) (11)	NA	Q5KHA8	Peptidyl-prolyl cis-trans isomerase-like 3	AT1G01940.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os06g04000.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	AC233070_2.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type AC233070.4 3910-1563 F EGN_Mt090430 200"	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.1200.1.A1_at	A	A1TS	POPTR_0006s23000	POPTR_0006s23000 (11)	scaffold_6:21837884-21838376(+) (11)	NA	NA	NA	AT5G02580.1	Plant protein 1589 of unknown function 	LOC_Os05g38680.1	"plant-specific domain TIGR01589 family protein, expressed"	Medtr7g022750.1	Uncharacterized plant-specific domain 01589 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120002.1.S1_s_at	A	A1TS	POPTR_0015s13060	POPTR_0015s13060 (11)	scaffold_15:13179774-13180261(+) (11)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.120026.1.S1_at	A	A1TS	POPTR_0005s08990	POPTR_0005s08990 (11)	scaffold_5:6322904-6323296(+) (11)	NA	Q869R9	Myb-like protein J	AT5G08520.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr8g073480.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120026.2.S1_a_at	A	A2TS	POPTR_0005s08990	POPTR_0005s08990 (11)//POPTR_0007s07150 (10)	scaffold_5:6319034-6319550(+) (11)//scaffold_7:5497744-5498271(+) (10)	NA	Q869R9	Myb-like protein J	AT5G08520.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr8g073480.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120026.2.S1_at	A	A1TS	POPTR_0007s07150	POPTR_0007s07150 (11)	scaffold_7:5497824-5498197(+) (11)	NA	Q869R9	Myb-like protein J	AT5G08520.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr8g073480.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12006.1.S1_at	A	A1TS	POPTR_0005s10950	POPTR_0005s10950 (11)	scaffold_5:7876584-7876932(+) (11)	NA	NA	NA	AT2G17705.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G08330.1); Has 135 Blast hits to 135 proteins in 32 species: Archae - 5; Bacteria - 29; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os03g04370.1	"protein-methionine-S-oxide reductase, putative, expressed"	Medtr5g022970.1	"peptide-methionine--S-oxide reductase (exp=, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120060.1.S1_at	A	A1TS	POPTR_0002s02860	POPTR_0002s02860 (11)	scaffold_2:1760913-1761588(+) (11)	NA	Q6Z690	Lysine-specific histone demethylase 1 homolog 1	AT4G16310.1	LSD1-like 3 	LOC_Os10g38850.1	"amine oxidase, putative, expressed"	Medtr1g028330.1	Amine oxidase; SWIRM 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.120072.1.S1_at	A	A1TS	POPTR_0001s09350	POPTR_0001s09350 (10)	scaffold_1:7142028-7142254(-) (10)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT4G11570.2	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os09g39560.1	"genetic modifier, putative, expressed"	Medtr4g149420.1	Histidine acid phosphatase; Haloacid dehalogenase-like hydrolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.12008.1.A1_at	A	A1TS	POPTR_0002s00750	POPTR_0002s00750 (11)	scaffold_2:341064-341630(+) (11)	NA	NA	NA	AT1G42550.1	plastid movement impaired1 	LOC_Os09g38090.1	expressed protein	Medtr4g155580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120084.1.S1_at	A	A1TS	POPTR_0001s31270	POPTR_0001s31270 (11)	scaffold_1:29595216-29595262(+) (11)	NA	Q31R08	GTP-binding protein lepA	AT5G08650.1	Small GTP-binding protein 	LOC_Os02g06300.1	"GTP-binding protein lepA, putative, expressed"	Medtr7g009110.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.120084.1.S1_s_at	A	A1TS	POPTR_0001s31270	POPTR_0001s31270 (11)	scaffold_1:29595352-29596328(+) (11)	NA	Q31R08	GTP-binding protein lepA	AT5G08650.1	Small GTP-binding protein 	LOC_Os02g06300.1	"GTP-binding protein lepA, putative, expressed"	Medtr7g009110.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.120087.1.S1_at	A	A1TS	POPTR_0008s08230	POPTR_0008s08230 (11)	scaffold_8:5122059-5122541(-) (11)	NA	Q9SA34	Probable inosine-5'-monophosphate dehydrogenase	AT1G16350.1	Aldolase-type TIM barrel family protein 	LOC_Os03g56800.1	"CBS domain containing membrane protein, putative, expressed"	Medtr7g100530.1	IMP dehydrogenase; 	GO:0055114|oxidation reduction	GO:0003824|catalytic activity	NA
PtpAffx.120087.2.S1_s_at	A	A1TS	POPTR_0010s18080	POPTR_0010s18080 (11)	scaffold_10:16449603-16450244(+) (11)	NA	Q9SA34	Probable inosine-5'-monophosphate dehydrogenase	AT1G16350.1	Aldolase-type TIM barrel family protein 	LOC_Os03g56800.1	"CBS domain containing membrane protein, putative, expressed"	Medtr7g100530.1	IMP dehydrogenase; 	GO:0055114|oxidation reduction	GO:0003824|catalytic activity	NA
PtpAffx.120111.1.S1_s_at	A	A1TS	POPTR_0002s01010	POPTR_0002s01010 (11)	scaffold_2:497257-499566(+) (11)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT1G20670.1	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr5g100440.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120127.1.A1_at	A	A1TS	POPTR_0001s34460	POPTR_0001s34460 (10)	scaffold_1:32587140-32587451(+) (10)	NA	NA	NA	AT1G29820.2	Magnesium transporter CorA-like family protein 	LOC_Os01g47460.1	expressed protein	Medtr2g034370.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120139.1.S1_at	A	A1TS	POPTR_0003s17700	POPTR_0003s17700 (10)	scaffold_3:17000518-17001717(+) (10)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120141.1.S1_s_at	A	A1TS	POPTR_0017s00520	POPTR_0017s00520 (11)	scaffold_17:197676-198335(+) (11)	POPTR_0007s00200 (7)	O80585	Methylenetetrahydrofolate reductase 2	AT2G44160.1	methylenetetrahydrofolate reductase 2 	LOC_Os03g60090.1	"methylenetetrahydrofolate reductase, putative, expressed"	Medtr1g047280.1	Methylenetetrahydrofolate reductase 	GO:0034641|cellular nitrogen compound metabolic process||GO:0055114|oxidation reduction||GO:0006555|methionine metabolic process||GO:0044281|small molecule metabolic process	GO:0004489|methylenetetrahydrofolate reductase (NADPH) activity	NA
PtpAffx.120153.1.S1_at	A	A1MS	POPTR_0007s14570	POPTR_0007s14570 (10)	scaffold_7:14318814-14318964(+) (10)	NA	Q8LF99	Probable xyloglucan endotransglucosylase/hydrolase protein 6	AT4G37800.1	xyloglucan endotransglucosylase/hydrolase 7 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g102140.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.120153.1.S1_s_at	A	A1TS	POPTR_0007s14570	POPTR_0007s14570 (11)	scaffold_7:14318524-14319183(+) (11)	NA	Q8LF99	Probable xyloglucan endotransglucosylase/hydrolase protein 6	AT4G37800.1	xyloglucan endotransglucosylase/hydrolase 7 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g102140.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.120155.1.S1_s_at	A	A1TS	POPTR_0014s16350	POPTR_0014s16350 (11)	scaffold_14:12463169-12463717(-) (11)	POPTR_0002s22260 (7)	B1HUD0	Chaperone protein dnaJ	AT2G05230.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os02g30620.3	"dnaJ domain containing protein, expressed"	Medtr5g104830.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.12016.2.S1_a_at	A	A2TS	POPTR_0008s17880	POPTR_0010s06620 (11)//POPTR_0008s17880 (11)	scaffold_10:7910053-7910819(-) (10)//scaffold_8:12019392-12020174(+) (11)	NA	P28643	"3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic"	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g30760.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.12016.3.S1_at	A	A1TS	POPTR_0008s17880	POPTR_0008s17880 (11)	scaffold_8:12019692-12020804(+) (11)	NA	P28643	"3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic"	AT1G24360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g30760.1	"3-oxoacyl-reductase, chloroplast precursor, putative, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.120199.1.A1_at	A	A1TS	POPTR_0004s21370	POPTR_0004s21370 (11)	scaffold_4:20525230-20525748(-) (11)	NA	NA	NA	AT5G22450.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73620.1	expressed protein	Medtr4g070070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1202.1.A1_at	A	A1TS	POPTR_0010s07600	POPTR_0010s07600 (11)	scaffold_10:8622078-8622412(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr1g065810.1	RNA-binding region RNP-1 (RNA recognition motif); Nuclear transport factor 2 	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.120213.1.S1_at	A	A1TS	POPTR_0008s17020	POPTR_0008s17020 (11)	scaffold_8:11452216-11454447(+) (11)	NA	P31049	Uncharacterized methyltransferase in lpd-3 5'region	AT3G23510.1	Cyclopropane-fatty-acyl-phospholipid synthase 	LOC_Os12g16650.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr1g064910.1	Cyclopropane-fatty-acyl-phospholipid synthase 	GO:0008610|lipid biosynthetic process	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity||GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
PtpAffx.120226.1.S1_at	A	A1MS	POPTR_0013s02210	POPTR_0013s02210 (11)	scaffold_13:1314377-1314923(-) (11)	NA	Q5H7P5	Mannosylglycoprotein endo-beta-mannosidase	AT1G09010.1	glycoside hydrolase family 2 protein 	LOC_Os05g32530.1	"mannosylglycoprotein endo-beta-mannosidase, putative, expressed"	Medtr1g099500.1	"Glycoside hydrolase family 2, sugar binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.120252.1.S1_s_at	A	A1TS	POPTR_0002s15610	POPTR_0002s15610 (11)	scaffold_2:11654812-11655109(+) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.120271.1.S1_at	A	A1TS	POPTR_0005s23320	POPTR_0005s23320 (11)	scaffold_5:22144227-22145460(-) (11)	NA	Q54UI3	tRNA (guanine-N(7)-)-methyltransferase subunit WDR4	AT1G03110.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g53530.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120287.1.S1_at	A	A1TS	POPTR_0014s15880	POPTR_0014s15880 (11)	scaffold_14:11967329-11967512(-) (11)	NA	Q8L633	"Ribonuclease Z, chloroplastic"	AT2G04530.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os09g30466.1	"nuclear ribonuclease Z, putative, expressed"	Medtr5g092020.1	"Nuclear ribonuclease Z, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120287.1.S1_s_at	A	A1TS	POPTR_0014s15880	POPTR_0014s15880 (11)	scaffold_14:11966445-11967334(-) (11)	NA	Q8L633	"Ribonuclease Z, chloroplastic"	AT2G04530.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os09g30466.1	"nuclear ribonuclease Z, putative, expressed"	Medtr5g092020.1	"Nuclear ribonuclease Z, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120301.1.S1_s_at	A	A1TS	POPTR_0001s37010	POPTR_0001s37010 (11)	scaffold_1:35834167-35834826(+) (11)	NA	O74462	Transcription initiation factor TFIID subunit 6	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59 	LOC_Os01g32750.1	"TATA binding protein-associated factor, putative, expressed"	Medtr7g026010.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0051090|regulation of transcription factor activity||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity||GO:0016986|transcription initiation factor activity	GO:0005634|nucleus
PtpAffx.120304.1.S1_s_at	A	A2TS	POPTR_0006s13640	POPTR_0006s13640 (11)//POPTR_0006s13650 (11)	scaffold_6:10859407-10860421(-) (11)//scaffold_6:10873700-10874688(-) (11)	NA	Q9SMZ4	Alpha-aminoadipic semialdehyde synthase	AT4G33150.2	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme 	LOC_Os02g54254.1	"saccharopine dehydrogenase, putative, expressed"	Medtr8g133370.1	"NAD(P) transhydrogenase, alpha subunit; Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme conserved region "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.120308.1.S1_s_at	A	A1TS	POPTR_0005s22600	POPTR_0005s22600 (11)	scaffold_5:21510521-21511065(-) (11)	NA	NA	NA	AT4G18260.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os05g49040.1	expressed protein	Medtr3g061440.1	Cytochrome b561 / ferric reductase transmembrane 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120312.1.S1_s_at	A	A1TS	POPTR_0001s18470	POPTR_0001s18470 (11)	scaffold_1:15521900-15522372(-) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.120315.1.S1_at	A	A1TS	POPTR_0001s28590	POPTR_0001s28590 (10)	scaffold_1:27359068-27360999(+) (10)	NA	Q91348	"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase"	AT1G07110.1	"fructose-2,6-bisphosphatase "	LOC_Os05g07130.1	"6PF-2-K/Fru-2,6-P2ASE liver isozyme, putative, expressed"	Medtr5g080220.1	"Fructose-2,6-bisphosphatase; "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0006000|fructose metabolic process	GO:0003873|6-phosphofructo-2-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.120317.1.S1_at	A	A1TS	POPTR_0015s00600	POPTR_0015s00600 (10)	scaffold_15:358625-359065(-) (10)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120325.1.S1_s_at	A	A1TS	POPTR_0013s07050	POPTR_0013s07050 (11)	scaffold_13:5756170-5757219(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os10g17260.1	"cytochrome P450, putative, expressed"	Medtr3g037120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.120333.1.S1_s_at	A	A2TS	POPTR_0001s18040	POPTR_0001s18040 (11)//POPTR_0003s05450 (11)	scaffold_1:15020672-15021218(-) (11)//scaffold_3:6719724-6720270(+) (11)	NA	Q94738	97 kDa heat shock protein	AT1G79920.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os01g08560.2	"DnaK family protein, putative, expressed"	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12036.2.S1_a_at	A	A1TS	POPTR_0014s11390	POPTR_0014s11390 (11)	scaffold_14:8486817-8487424(+) (11)	NA	NA	NA	AT3G62370.1	heme binding 	LOC_Os03g19580.1	expressed protein	Medtr1g106510.1	hypothetical protein 	GO:0055114|oxidation reduction	GO:0020037|heme binding	NA
PtpAffx.12036.4.A1_a_at	A	A1TS	POPTR_0014s11390	POPTR_0014s11390 (10)	scaffold_14:8486149-8487683(+) (10)	NA	NA	NA	AT3G62370.1	heme binding 	LOC_Os03g19580.1	expressed protein	Medtr1g106510.1	hypothetical protein 	GO:0055114|oxidation reduction	GO:0020037|heme binding	NA
PtpAffx.120369.1.S1_s_at	A	A1TS	POPTR_0006s06100	POPTR_0006s06100 (11)	scaffold_6:4339377-4339688(+) (11)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.2	glucuronidase 3 	LOC_Os06g08090.2	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.12037.1.A1_s_at	A	A1TS	POPTR_0016s03630	POPTR_0016s03630 (11)	scaffold_16:1985308-1985758(+) (11)	NA	Q9ZNZ7	"Ferredoxin-dependent glutamate synthase 1, chloroplastic"	AT5G04140.1	glutamate synthase 1 	LOC_Os07g46460.1	"ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0015930|glutamate synthase activity	NA
PtpAffx.12037.2.A1_at	A	A1TS	POPTR_0016s03630	POPTR_0016s03630 (9)	scaffold_16:1986044-1986215(+) (10)	NA	Q9ZNZ7	"Ferredoxin-dependent glutamate synthase 1, chloroplastic"	AT5G04140.1	glutamate synthase 1 	LOC_Os07g46460.1	"ferredoxin-dependent glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0015930|glutamate synthase activity	NA
PtpAffx.120370.1.S1_at	A	A1TS	POPTR_0011s02600	POPTR_0011s02600 (11)	scaffold_11:2501220-2501582(-) (11)	NA	NA	NA	AT1G30260.1	BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1); Has 30 Blast hits to 30 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g115340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12038.1.S1_at	A	A1MS	POPTR_0018s10830	POPTR_0018s10830 (11)	scaffold_18:11709718-11710363(-) (11)	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os09g25850.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.12038.2.S1_at	A	A1TS	POPTR_0018s10830	POPTR_0018s10830 (11)	scaffold_18:11709362-11709559(-) (11)	NA	Q8H1Z0	Protein WAX2	AT5G57800.1	Fatty acid hydroxylase superfamily 	LOC_Os09g25850.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.1204.1.A1_at	A	A1TS	POPTR_0007s12470	POPTR_0007s12470 (11)	scaffold_7:12778230-12778643(-) (11)	NA	Q6NLY8	HVA22-like protein k	AT4G36720.1	HVA22-like protein K 	LOC_Os07g38100.1	"HVA22, putative, expressed"	Medtr5g019610.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120421.1.A1_at	A	A1TS	POPTR_0002s00780	POPTR_0002s00780 (11)	scaffold_2:359520-360072(-) (11)	NA	Q8LC69	RING-H2 finger protein ATL8	AT1G76410.1	RING/U-box superfamily protein 	LOC_Os02g46100.1	"RING-H2 finger protein, putative, expressed"	Medtr5g024680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120425.1.A1_at	A	A1TS	POPTR_0001s05030	POPTR_0001s05030 (11)	scaffold_1:3882264-3882641(+) (11)	NA	Q9ZPV5	Nucleolar complex protein 2 homolog	AT2G18220.1	Noc2p family 	LOC_Os10g35280.1	"nucleolar complex protein 2, putative, expressed"	Medtr1g140790.1	Protein of unknown function UPF0120 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120427.1.A1_at	A	A1MS	POPTR_0015s04000	POPTR_0015s04000 (10)	scaffold_15:3893991-3894548(+) (10)	POPTR_0015s04030 (7)	Q40392	TMV resistance protein N	AT1G27180.1	"disease resistance protein (TIR-NBS-LRR class), putative "	LOC_Os01g71106.2	"NBS-LRR disease resistance protein, putative, expressed"	Medtr8g074680.1	TIR; NB-ARC 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0006915|apoptosis||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0005524|ATP binding||GO:0004888|transmembrane receptor activity||GO:0005515|protein binding	GO:0031224|intrinsic to membrane
PtpAffx.120439.1.A1_at	A	A1TS	POPTR_0003s12950	POPTR_0003s12950 (10)	scaffold_3:13368359-13368741(-) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT5G52430.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g57610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12044.1.S1_at	A	A1TS	POPTR_0008s14340	POPTR_0008s14340 (11)	scaffold_8:9516230-9516519(+) (11)	NA	NA	NA	AT2G02180.1	tobamovirus multiplication protein 3 	LOC_Os10g39220.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120454.1.A1_at	A	A1TS	POPTR_0001s11870	POPTR_0001s11870 (11)	scaffold_1:9208500-9208666(+) (11)	NA	Q38890	Endoglucanase 25	AT5G49720.1	glycosyl hydrolase 9A1 	LOC_Os03g21210.1	"endoglucanase, putative, expressed"	Medtr2g034060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.12049.1.A1_at	A	A1TS	POPTR_0003s07480	POPTR_0003s07480 (11)	scaffold_3:9026938-9027416(-) (11)	NA	Q75N33	Protein transport protein Sec16B	AT5G47490.1	RGPR-related 	LOC_Os02g01490.1	expressed protein	Medtr8g105690.1	N-6 Adenine-specific DNA methylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120497.2.A1_a_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (9)	scaffold_13:1653644-1653839(+) (9)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120497.2.A1_s_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (10)	scaffold_13:1653235-1653900(+) (10)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1205.3.S1_s_at	A	A1MS	POPTR_0006s09350	POPTR_0006s09350 (11)	scaffold_6:6879087-6879468(+) (11)	NA	NA	NA	AT5G02020.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59080.1); Has 77 Blast hits to 77 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120529.1.A1_s_at	A	A1TS	POPTR_0013s11050	POPTR_0013s11050 (9)	scaffold_13:11706193-11711944(-) (11)	NA	NA	NA	AT1G22520.1	Domain of unknown function (DUF543) 	LOC_Os03g62420.1	expressed protein	Medtr3g012620.1	Protein of unknown function DUF543 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120534.1.A1_at	A	A1TS	POPTR_0010s08090	POPTR_0010s08090 (11)	scaffold_10:9023206-9023554(-) (11)	NA	NA	NA	AT5G43310.2	COP1-interacting protein-related 	LOC_Os03g64320.1	expressed protein	Medtr1g090340.1	"COP1-interacting protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120558.1.A1_at	A	A1TS	POPTR_0019s12070	POPTR_0019s12070 (9)	scaffold_19:13216059-13216458(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12056.3.S1_a_at	A	A1TS	POPTR_0019s07600	POPTR_0019s07600 (11)	scaffold_19:8682454-8683306(-) (11)	NA	P31687	4-coumarate--CoA ligase 2	AT1G65060.1	4-coumarate:CoA ligase 3 	LOC_Os02g46970.1	"AMP-binding domain containing protein, expressed"	Medtr5g007720.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.120577.1.A1_at	A	A1MS	POPTR_0017s09310	POPTR_0017s09310 (9)	scaffold_17:7925137-7925387(+) (9)//scaffold_18:2862541-2862791(+) (9)	NA	Q8LGN0	Glutamate receptor 2.7	AT2G29120.1	glutamate receptor 2.7 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12058.1.A1_s_at	A	A1TS	POPTR_0006s17720	POPTR_0006s17720 (11)	scaffold_6:15858106-15859994(-) (11)	NA	Q54Q39	Protein phosphatase 1 regulatory subunit pprA	AT5G19680.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g13640.1	"protein phosphatase 1 regulatory subunit SDS22, putative, expressed"	Medtr4g159610.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.120580.1.A1_a_at	A	A1TS	POPTR_0689s00200	POPTR_0689s00200 (11)	scaffold_13:11848027-11848194(+) (9)//scaffold_689:1154-1329(+) (11)	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr7g099470.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12059.1.S1_at	A	A1TS	POPTR_0008s10590	POPTR_0008s10590 (11)	scaffold_8:6637143-6637958(+) (11)	NA	O62664	Prostaglandin G/H synthase 1	AT3G01420.1	Peroxidase superfamily protein 	LOC_Os12g26290.2	"alpha-DOX2, putative, expressed"	Medtr4g155460.1	Animal haem peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.12060.1.S1_at	A	A1TS	POPTR_0011s03420	POPTR_0011s03420 (9)	scaffold_11:3530254-3530729(+) (9)	NA	O27710	Phosphosulfolactate synthase	AT4G21320.1	Aldolase-type TIM barrel family protein 	LOC_Os06g46900.1	"phosphosulfolactate synthase-related protein, putative, expressed"	NA	NA	GO:0019295|coenzyme M biosynthetic process	NA	NA
PtpAffx.12063.2.A1_at	A	A1TS	POPTR_0001s02640	POPTR_0001s02640 (11)	scaffold_1:2089075-2089440(+) (11)	NA	P54672	AP-2 complex subunit mu	AT5G46630.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os02g46510.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g014510.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.120654.1.A1_at	A	A1TS	POPTR_0010s05830	POPTR_0010s05830 (11)	scaffold_10:7281917-7282249(-) (11)	NA	Q9FXT4	Alpha-galactosidase	AT3G26380.1	Melibiase family protein 	LOC_Os01g33420.1	"glycosyl hydrolase family protein 27, putative, expressed"	Medtr2g114520.1	"Glycoside hydrolase, clan GH-D; Ricin B lectin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120672.1.A1_at	A	A1TS	POPTR_0015s15510	POPTR_0015s15510 (11)	scaffold_15:14751171-14751790(-) (11)	NA	Q9SA16	Protein PHLOEM PROTEIN 2-LIKE A9	AT1G10155.1	phloem protein 2-A10 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120676.1.S1_a_at	A	A1TS	POPTR_0012s02690	POPTR_0012s02690 (11)	scaffold_12:2219260-2219592(+) (11)	NA	Q5TYW4	Neuroblastoma-amplified sequence	AT5G24350.1	CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g13150.1	expressed protein	Medtr3g123460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120676.2.A1_at	A	A1TS	POPTR_0012s02690	POPTR_0012s02690 (10)	scaffold_12:2219145-2219670(+) (10)	NA	Q5TYW4	Neuroblastoma-amplified sequence	AT5G24350.1	CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os12g13150.1	expressed protein	Medtr3g123460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120681.1.A1_at	A	A1TS	POPTR_0014s01430	POPTR_0014s01430 (11)	scaffold_14:1384157-1384681(+) (11)	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	NA	NA	NA	NA	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.120706.1.A1_at	A	A1TS	POPTR_0005s09930	POPTR_0005s09930 (9)	scaffold_5:7036200-7036554(-) (9)	NA	P20024	Myb-related protein Zm1	AT1G79180.1	myb domain protein 63 	LOC_Os02g46780.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120709.1.A1_at	A	A1TS	POPTR_0006s01800	POPTR_0006s01800 (11)	scaffold_6:1088570-1088875(+) (11)	NA	Q9H6Q4	Cytosolic Fe-S cluster assembly factor NARFL	AT4G16440.1	ferredoxin hydrogenases 	LOC_Os03g53750.1	"nuclear prelamin A recognition factor, putative, expressed"	Medtr3g162950.1	Iron hydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120711.1.A1_at	A	A1TS	POPTR_0005s02070	POPTR_0005s02070 (10)	scaffold_5:1338127-1338548(-) (10)	NA	Q9SUJ1	Syntaxin-43	AT5G26980.2	syntaxin of plants 41 	LOC_Os06g02570.1	"syntaxin, putative, expressed"	Medtr1g100300.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.120725.1.A1_at	A	A1TS	POPTR_0002s19160	POPTR_0002s19160 (10)	scaffold_2:15087562-15088019(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120736.1.A1_s_at	A	A1TS	POPTR_0005s25310	POPTR_0005s25310 (11)	scaffold_5:23614444-23615091(+) (11)	NA	NA	NA	AT1G75400.1	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120736.2.A1_at	A	A1TS	POPTR_0002s03300	POPTR_0002s03300 (11)	scaffold_2:2021900-2022590(-) (11)	NA	NA	NA	AT1G75400.1	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120741.1.A1_at	A	A1TS	POPTR_0004s04630	POPTR_0004s04630 (11)	scaffold_4:3391006-3392618(+) (11)	NA	Q38741	Squamosa promoter-binding protein 1	AT2G33810.1	squamosa promoter binding protein-like 3 	LOC_Os04g46580.1	"OsSPL7 - SBP-box gene family member, expressed"	Medtr2g017680.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.12075.1.A1_at	A	A1TS	POPTR_0001s04510	POPTR_0001s04510 (11)	scaffold_1:3546755-3547223(+) (11)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.12076.1.A1_at	A	A1TS	POPTR_0012s10390	POPTR_0012s10390 (9)	scaffold_12:11180304-11180659(+) (10)	NA	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr7g018130.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.120760.1.A1_at	A	A1TS	POPTR_0008s11820	POPTR_0008s11820 (11)	scaffold_8:7573388-7575194(+) (11)	NA	O66119	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AT3G25860.1	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os08g33440.1	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	AC233660_8.1	Biotin/lipoyl attachment; Dihydrolipoamide succinyltransferase AC233660.2 38835-37267 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.120762.1.A1_at	A	A1TS	POPTR_0002s05910	POPTR_0002s05910 (11)	scaffold_2:3901176-3901656(-) (11)	NA	NA	NA	AT2G42975.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g47630.1	expressed protein	Medtr5g098430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120767.1.A1_at	A	A1TS	POPTR_0008s09990	POPTR_0008s09990 (11)	scaffold_8:6185013-6185472(-) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G48100.1	Pectin lyase-like superfamily protein 	LOC_Os05g20020.1	"polygalacturonase, putative, expressed"	Medtr2g037040.1	"Aminoacyl-tRNA synthetase, class I "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.120780.1.A1_at	A	A1MS	POPTR_0010s19270	POPTR_0010s19270 (10)	scaffold_10:17235951-17236457(+) (10)	NA	C0LGQ4	Probable LRR receptor-like serine/threonine-protein kinase MRH1	AT4G18640.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g48390.2	expressed protein	Medtr1g102890.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.120781.1.A1_at	A	A1TS	POPTR_0019s09050	POPTR_0019s09050 (11)	scaffold_19:10629803-10630247(+) (11)	NA	NA	NA	AT3G20260.1	Protein of unknown function (DUF1666) 	LOC_Os08g40820.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12079.1.S1_at	A	A1TS	POPTR_0018s02300	POPTR_0018s02300 (11)	scaffold_18:2053475-2054705(-) (11)	NA	Q93VG8	UPF0326 protein At4g17486	AT5G25170.1	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1208.1.S1_s_at	A	A1TS	POPTR_0005s00350	POPTR_0005s00350 (9)	scaffold_5:106986-107444(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g102990.1	"mucin 2, intestinal/tracheal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1208.2.A1_at	A	A1TS	POPTR_0013s00300	POPTR_0013s00300 (9)	scaffold_13:84962-85397(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr1g102990.1	"mucin 2, intestinal/tracheal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120802.1.A1_at	A	A1TS	POPTR_0001s20590	POPTR_0001s20590 (11)	scaffold_1:18584564-18586137(+) (11)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os01g08814.3	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120808.1.A1_at	A	A1TS	POPTR_0018s01460	POPTR_0018s01460 (11)	scaffold_18:1386594-1387055(+) (11)	NA	P0C1I7	Peptidyl-prolyl cis-trans isomerase cyp5	AT4G32420.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os02g10970.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr1g013450.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.120820.1.A1_at	A	A1TS	POPTR_0015s07000	POPTR_0015s07000 (11)	scaffold_15:8081446-8082605(-) (11)	NA	NA	NA	AT3G29760.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os07g01850.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g071320.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120827.1.A1_at	A	A1MS	POPTR_0004s18520	POPTR_0004s18520 (10)	scaffold_4:18375796-18376888(-) (11)	POPTR_0009s14100 (6)	Q5TAQ9	DDB1- and CUL4-associated factor 8	AT4G35140.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g39760.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g111430.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12083.1.A1_at	A	A1TS	POPTR_0006s00280	POPTR_0006s00280 (11)	scaffold_6:60701-61040(+) (11)	NA	P54567	Uncharacterized protein yqkD	AT4G17150.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g40730.1	"protein with a conserved N-terminal region, putative, expressed"	Medtr2g033450.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120834.1.A1_at	A	A1TS	POPTR_0017s07440	POPTR_0017s07440 (11)	scaffold_17:5758765-5759221(+) (9)//scaffold_17:5786396-5788515(+) (11)//scaffold_2000:1809-2265(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr5g073480.1	"Uncharacterized 24.1 kDa protein in LEF4-P33 intergenic region, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120844.1.A1_at	A	A1TS	POPTR_0012s10800	POPTR_0012s10800 (11)	scaffold_12:11506677-11507038(-) (11)	NA	Q00004	Signal recognition particle 68 kDa protein	AT5G61970.1	signal recognition particle-related / SRP-related 	LOC_Os08g23360.1	"signal recognition particle 68 kDa protein, putative, expressed"	Medtr4g152260.1	"Signal recognition particle 68 kDa protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120846.1.A1_at	A	A1TS	POPTR_0010s17440	POPTR_0010s17440 (11)	scaffold_10:16028188-16028670(+) (11)	NA	Q9C554	Expansin-A1	AT1G69530.2	expansin A1 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120846.1.A1_s_at	A	A1TS	POPTR_0010s17440	POPTR_0010s17440 (11)	scaffold_10:16028200-16028719(+) (11)	NA	Q9C554	Expansin-A1	AT1G69530.2	expansin A1 	LOC_Os05g39990.1	"expansin precursor, putative, expressed"	Medtr5g044880.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12086.1.S1_a_at	A	A2TS	POPTR_0006s03100	POPTR_0006s03100 (11)//POPTR_0016s02950 (11)	scaffold_16:1488827-1489391(-) (11)//scaffold_6:1975119-1975689(-) (11)	NA	Q7SCY7	Protein sym-1	AT5G19750.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os11g03670.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr7g105450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.12086.1.S1_at	A	A1TS	POPTR_0006s03100	POPTR_0006s03100 (11)	scaffold_6:1974255-1975899(-) (11)	NA	Q7SCY7	Protein sym-1	AT5G19750.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os11g03670.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr7g105450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.12086.2.A1_at	A	A1TS	POPTR_0016s02950	POPTR_0016s02950 (11)	scaffold_16:1488005-1489367(-) (11)	NA	Q7SCY7	Protein sym-1	AT5G19750.1	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os11g03670.1	"Mpv17 / PMP22 family domain containing protein, expressed"	Medtr7g105450.1	Mpv17/PMP22 	NA	NA	GO:0016021|integral to membrane
PtpAffx.120868.1.A1_at	A	A1TS	POPTR_0014s16340	POPTR_0014s16340 (9)	scaffold_14:12450859-12451132(+) (9)	NA	Q9SJ41	Zinc finger CCCH domain-containing protein 18	AT2G05160.1	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os08g03310.4	"zinc finger family protein, putative, expressed"	Medtr5g102170.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.120873.1.A1_at	A	A1TS	POPTR_0008s13370	POPTR_0008s13370 (11)	scaffold_8:8779699-8780159(+) (11)	NA	NA	NA	AT1G67920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24600.1); Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120874.1.A1_s_at	A	A1TS	POPTR_0005s07290	POPTR_0005s07290 (11)	scaffold_5:4939944-4940282(+) (11)	NA	P46668	Homeobox-leucine zipper protein ATHB-6	AT2G22430.1	homeobox protein 6 	LOC_Os09g29460.1	"homeobox associated leucine zipper, putative, expressed"	Medtr3g102220.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.120877.1.A1_at	A	A1TS	POPTR_0001s16600	POPTR_0001s16600 (11)	scaffold_1:13371364-13371704(-) (11)	NA	NA	NA	AT1G72390.1	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). 	LOC_Os10g25200.1	expressed protein	Medtr8g025570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120888.1.A1_at	A	A1MS	POPTR_0008s01320	POPTR_0008s01320 (11)	scaffold_8:643571-643923(+) (11)	NA	Q9CAF5	"ABC transporter I family member 6, chloroplastic"	AT3G10670.1	non-intrinsic ABC protein 7 	LOC_Os03g21490.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g161030.1	FeS assembly ATPase SufC 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.12089.1.A1_at	A	A1TS	POPTR_0005s12080	POPTR_0005s12080 (11)	scaffold_5:8874464-8874954(+) (11)	NA	NA	NA	AT1G75420.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g15780.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
PtpAffx.12089.2.A1_a_at	A	A1TS	POPTR_0005s12080	POPTR_0005s12080 (11)	scaffold_5:8872826-8873556(+) (11)	NA	NA	NA	AT1G75420.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g15780.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
PtpAffx.120896.1.A1_at	A	A1TS	POPTR_0012s12100	POPTR_0012s12100 (11)	scaffold_12:12382394-12383212(+) (11)	NA	Q9SA16	Protein PHLOEM PROTEIN 2-LIKE A9	AT1G10155.1	phloem protein 2-A10 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12091.1.S1_at	A	A1TS	POPTR_0003s08930	POPTR_0003s08930 (11)	scaffold_3:10223420-10226548(-) (11)	NA	NA	NA	AT4G17960.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46620.1); Has 46 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g03575.1	expressed protein	Medtr5g014500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120918.1.A1_at	A	A1TS	POPTR_0010s23370	POPTR_0010s23370 (11)	scaffold_10:19982551-19982645(+) (11)	NA	Q9SV36	Armadillo repeat-containing kinesin-like protein 1	AT3G54870.1	Armadillo/beta-catenin repeat family protein / kinesin motor family protein 	LOC_Os03g05820.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.120918.1.A1_s_at	A	A1TS	POPTR_0010s23370	POPTR_0010s23370 (11)	scaffold_10:19981999-19982562(+) (11)	NA	Q9SV36	Armadillo repeat-containing kinesin-like protein 1	AT3G54870.1	Armadillo/beta-catenin repeat family protein / kinesin motor family protein 	LOC_Os03g05820.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.12093.1.A1_at	A	A1TS	POPTR_0008s12400	POPTR_0008s12400 (11)	scaffold_8:8012106-8012422(+) (11)	NA	O60113	Uncharacterized amino-acid permease C15C4.04c	AT2G01170.1	bidirectional amino acid transporter 1 	LOC_Os01g42234.2	"amino acid permease family protein, putative, expressed"	AC235665_40.1	Amino acid/polyamine transporter I AC235665.2 219297-222930 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12094.1.A1_at	A	A1TS	POPTR_0018s11610	POPTR_0018s11610 (11)	scaffold_18:12281353-12282063(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G57970.2	DNA glycosylase superfamily protein 	LOC_Os04g42290.1	"methyladenine glycosylase, putative, expressed"	Medtr8g145370.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.120945.1.A1_at	A	A1MS	POPTR_0017s07230	POPTR_0017s07230 (9)	scaffold_17:5624671-5625076(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120951.1.A1_at	A	A1TS	POPTR_0019s15290	POPTR_0019s15290 (9)	scaffold_19:15826369-15826643(-) (9)	NA	NA	NA	AT2G30530.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01970.1); Has 5513 Blast hits to 872 proteins in 154 species: Archae - 0; Bacteria - 30; Metazoa - 615; Fungi - 144; Plants - 149; Viruses - 12; Other Eukaryotes - 4563 (source: NCBI BLink). 	LOC_Os05g25070.1	expressed protein	Medtr3g083960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120962.1.A1_at	A	A1TS	POPTR_0017s02740	POPTR_0017s02740 (11)	scaffold_17:1955497-1955937(-) (11)	NA	O04491	Putative pentatricopeptide repeat-containing protein At1g09680	AT1G09680.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g38930.1	"pentatricopeptide, putative, expressed"	Medtr5g085730.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12097.1.A1_at	A	A1TS	POPTR_0008s06820	POPTR_0008s06820 (11)	scaffold_8:4088664-4089039(+) (11)	NA	NA	NA	AT2G40080.1	Protein of unknown function (DUF1313) 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr3g093640.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120971.1.A1_at	A	A1TS	POPTR_0006s13270	POPTR_0006s13270 (11)	scaffold_6:10511009-10511558(-) (11)	NA	NA	NA	AT3G09730.1	unknown protein; Has 1171 Blast hits to 1097 proteins in 212 species: Archae - 14; Bacteria - 83; Metazoa - 583; Fungi - 105; Plants - 149; Viruses - 14; Other Eukaryotes - 223 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120973.1.A1_at	A	A1MS	POPTR_0010s04320	POPTR_0010s04320 (11)	scaffold_10:5365125-5365329(-) (11)	NA	Q8H157	Nitrate transporter 1.2	AT1G69850.1	nitrate transporter 1:2 	LOC_Os06g38294.1	"peptide transporter PTR2, putative, expressed"	Medtr5g039420.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.120993.1.A1_s_at	A	A1TS	POPTR_0009s03890	POPTR_0009s03890 (11)	scaffold_9:4454195-4454418(+) (11)	NA	NA	NA	AT5G59500.1	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases 	NA	NA	Medtr8g047820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.120995.1.A1_at	A	A1TS	POPTR_0002s16440	POPTR_0002s16440 (9)	scaffold_2:12299807-12299977(-) (9)	NA	Q49YU2	Diacylglycerol kinase	AT2G46090.1	Diacylglycerol kinase family protein 	LOC_Os03g03400.1	"diacylglycerol kinase, putative, expressed"	Medtr7g088910.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.120999.1.S1_at	A	A1TS	POPTR_0016s01560	POPTR_0016s01560 (11)	scaffold_16:708210-708313(+) (11)	POPTR_0006s01170 (7)	Q3TIX9	U4/U6.U5 tri-snRNP-associated protein 2	AT4G22350.2	Ubiquitin C-terminal hydrolases superfamily protein 	LOC_Os09g24250.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr4g106790.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.1210.1.S1_x_at	A	A1TS	POPTR_0017s14310	POPTR_0017s14310 (11)	scaffold_17:14417238-14418052(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12100.1.A1_at	A	A2TS	POPTR_0081s00220	POPTR_0081s00220 (11)//POPTR_0005s01530 (10)	scaffold_5:1001627-1003463(+) (10)//scaffold_81:32678-34483(-) (11)	NA	NA	NA	AT5G26800.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g19400.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121001.1.A1_at	A	A1TS	POPTR_0015s01720	POPTR_0015s01720 (11)	scaffold_15:1104568-1105094(-) (11)	NA	NA	NA	AT5G53440.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g124190.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121004.1.A1_at	A	A1MS	POPTR_0014s11070	POPTR_0014s11070 (11)	scaffold_14:8239847-8240337(-) (11)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g61740.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g133620.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.121010.1.A1_at	A	A1TS	POPTR_0005s22630	POPTR_0005s22630 (11)	scaffold_5:21536939-21537023(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G59080.1	Eukaryotic aspartyl protease family protein 	LOC_Os02g21040.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr5g098350.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121021.1.A1_at	A	A1MS	POPTR_0003s15350	POPTR_0003s15350 (11)	scaffold_3:15159158-15159525(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121023.1.A1_at	A	A1MA	POPTR_0003s17180	POPTR_0003s17180 (11)	scaffold_3:16621138-16621494(-) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121024.1.A1_at	A	A1TS	POPTR_0006s02510	POPTR_0006s02510 (9)	scaffold_6:1638545-1639038(+) (9)	NA	P32110	Probable glutathione S-transferase	AT3G09270.1	glutathione S-transferase TAU 8 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr1g111830.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121029.1.A1_s_at	A	A1TS	POPTR_0010s25960	POPTR_0010s25960 (11)	scaffold_10:21373111-21374938(-) (11)	NA	NA	NA	AT2G03070.1	mediator subunit 8 	LOC_Os03g31010.1	expressed protein	Medtr5g014110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12103.1.S1_at	A	A1TS	POPTR_0017s07060	POPTR_0017s07060 (10)	scaffold_17:5482872-5484024(-) (10)	NA	Q93YW0	"Protein EXECUTER 1, chloroplastic"	AT4G33630.2	Protein of unknown function (DUF3506) 	LOC_Os10g34400.2	expressed protein	Medtr4g121190.1	hypothetical protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.121030.1.A1_at	A	A1TA	POPTR_0010s04890	POPTR_0010s04890 (11)	scaffold_10:6072823-6073052(+) (11)	NA	Q9ZSE4	Serine/threonine-protein phosphatase PP2A catalytic subunit	AT1G10430.1	protein phosphatase 2A-2 	LOC_Os02g12580.1	"OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed"	Medtr5g038210.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.121034.1.A1_at	A	A1TA	POPTR_0010s14800	POPTR_0010s14800 (10)	scaffold_10:14282862-14283087(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121036.1.A1_at	A	A1MS	POPTR_0001s10770	POPTR_0001s10770 (10)	scaffold_1:8381619-8382256(+) (10)	NA	Q8L7I1	Uncharacterized protein At4g10930	AT4G10930.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g10700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12104.1.S1_at	A	A1TS	POPTR_0006s01450	POPTR_0006s01450 (10)	scaffold_6:860543-860576(+) (10)//scaffold_6:878819-878852(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121045.1.A1_at	A	A1TS	POPTR_0007s05540	POPTR_0007s05540 (10)	scaffold_7:3611810-3613003(-) (10)	NA	Q94FB9	ABC transporter D family member 1	AT4G39850.3	peroxisomal ABC transporter 1 	LOC_Os01g73530.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g101500.1	Peroxysomal long chain fatty acyl transporter 	GO:0006810|transport	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.121047.1.A1_at	A	A1TS	POPTR_0013s13560	POPTR_0013s13560 (11)	scaffold_13:13997208-13997981(-) (11)	NA	NA	NA	AT1G03687.1	DTW domain-containing protein 	LOC_Os06g23504.2	"DTW domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121049.1.A1_at	A	A1TS	POPTR_0005s13950	POPTR_0005s13950 (11)	scaffold_5:10960253-10960472(+) (11)	NA	P49082	Guanine nucleotide-binding protein alpha-1 subunit	AT2G23460.1	extra-large G-protein 1 	LOC_Os12g40190.1	"G-protein alpha subunit, putative, expressed"	Medtr5g018540.2	"G-protein alpha subunit, group I "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121052.1.A1_at	A	A1TA	POPTR_0002s08720	POPTR_0002s08720 (10)	scaffold_2:6120830-6121106(-) (11)	NA	Q07512	Flavonol synthase/flavanone 3-hydroxylase	AT5G08640.2	flavonol synthase 1 	LOC_Os02g52840.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g097910.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.121064.1.A1_at	A	A1TS	POPTR_0010s05230	POPTR_0010s05230 (11)	scaffold_10:6699744-6700187(+) (11)	NA	Q9LDA9	"CRS2-associated factor 2, chloroplastic"	AT1G23400.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os01g21990.1	"CRS2-associated factor 2, chloroplast precursor, putative, expressed"	Medtr4g159520.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.121065.1.A1_at	A	A1TS	POPTR_0011s07690	POPTR_0011s07690 (11)	scaffold_11:8528119-8528484(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121067.1.A1_at	A	A1TS	POPTR_0018s09300	POPTR_0018s09300 (11)	scaffold_18:10175623-10176499(-) (11)	NA	Q54NM9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3	AT5G19690.1	staurosporin and temperature sensitive 3-like A 	LOC_Os05g44360.1	"oligosaccharyl transferase, putative, expressed"	Medtr1g143540.1	"Oligosaccharyl transferase, STT3 subunit "	GO:0006486|protein amino acid glycosylation	GO:0004576|oligosaccharyl transferase activity	GO:0016020|membrane
PtpAffx.12107.1.A1_at	A	A1TS	POPTR_0008s08850	POPTR_0008s08850 (11)	scaffold_8:5487920-5488167(-) (11)	NA	O49255	NAC domain-containing protein 29	AT1G69490.1	"NAC-like, activated by AP3/PI "	LOC_Os12g03040.1	"no apical meristem protein, putative, expressed"	Medtr5g045070.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.121079.1.A1_at	A	A1TS	POPTR_0008s09720	POPTR_0008s09720 (9)	scaffold_8:6003372-6003737(+) (9)	NA	Q8RU27	"Alpha-1,4-glucan-protein synthase [UDP-forming] 2"	AT3G08900.1	reversibly glycosylated polypeptide 3 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
PtpAffx.121081.1.A1_at	A	A1TS	POPTR_0017s11340	POPTR_0017s11340 (11)	scaffold_17:11099363-11099906(-) (11)	NA	Q54S83	"Protein midA, mitochondrial"	AT3G28700.1	Protein of unknown function (DUF185) 	LOC_Os01g40620.1	"Uncharacterized ACR, COG1565 containing protein, putative, expressed"	Medtr4g100910.1	Protein of unknown function DUF185 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121085.1.A1_at	A	A1TS	POPTR_0001s18260	POPTR_0001s18260 (11)	scaffold_1:15334407-15334539(+) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.121088.1.A1_at	A	A1MA	POPTR_0001s14850	POPTR_0001s14850 (9)	scaffold_1:11665859-11666857(+) (9)	NA	Q9SAI4	Aquaporin NIP6-1	AT1G80760.1	NOD26-like intrinsic protein 6;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.121088.2.A1_at	A	A1MA	POPTR_0001s14850	POPTR_0001s14850 (11)	scaffold_1:11665949-11666102(+) (11)	NA	Q9SAI4	Aquaporin NIP6-1	AT1G80760.1	NOD26-like intrinsic protein 6;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.121094.1.A1_at	A	A1TS	POPTR_0001s24920	POPTR_0001s24920 (11)	scaffold_1:24192005-24192332(+) (11)	NA	NA	NA	AT5G59500.1	protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases 	NA	NA	Medtr8g047820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121096.1.A1_at	A	A1MS	POPTR_0008s14470	POPTR_0008s14470 (11)	scaffold_8:9605215-9605477(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121097.1.A1_at	A	A1TS	POPTR_0002s10610	POPTR_0002s10610 (11)	scaffold_2:7693340-7693575(-) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT1G58200.2	MSCS-like 3 	LOC_Os03g31839.1	"transposon protein, putative, unclassified"	Medtr3g149450.1	MscS Mechanosensitive ion channel 	NA	NA	GO:0016020|membrane
PtpAffx.121105.1.A1_at	A	A1TS	POPTR_0012s01540	POPTR_0012s01540 (10)	scaffold_12:1169031-1169215(+) (10)	NA	Q9FGM0	"ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial"	AT5G53170.1	FTSH protease 11 	LOC_Os01g43150.1	"OsFtsH9  FtsH protease, homologue of AtFtsH11, expressed"	Medtr3g139890.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.121110.1.A1_at	A	A1TS	POPTR_0007s03960	POPTR_0007s03960 (11)	scaffold_7:2363201-2364374(+) (11)	NA	Q91WM3	U3 small nucleolar RNA-interacting protein 2	AT4G05410.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g42770.1	expressed protein	AC234842_3.1	WD40 repeat AC234842.1 17142-14392 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121122.1.A1_at	A	A1TS	POPTR_0003s09630	POPTR_0003s09630 (11)	scaffold_3:10901670-10902095(-) (11)	NA	P23922	Transcription factor HBP-1a	AT2G35530.1	basic region/leucine zipper transcription factor 16 	LOC_Os12g13170.2	"transcription factor, putative, expressed"	Medtr5g028830.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.121138.1.A1_at	A	A1TS	POPTR_0001s23980	POPTR_0001s23980 (11)	scaffold_1:23359732-23361644(+) (11)	NA	Q8LCU7	"Probable trans-2-enoyl-CoA reductase, mitochondrial"	AT3G45770.1	"Polyketide synthase, enoylreductase family protein "	LOC_Os11g01154.4	"dehydrogenase, putative, expressed"	Medtr2g113810.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.121142.1.A1_s_at	A	A1TS	POPTR_0014s04250	POPTR_0014s04250 (11)	scaffold_14:3335020-3335349(-) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.121185.1.A1_at	A	A1TS	POPTR_0001s03930	POPTR_0001s03930 (10)	scaffold_1:3135877-3136147(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1212.1.A1_at	A	A1TS	POPTR_0012s00760	POPTR_0012s00760 (10)	scaffold_12:425907-426257(-) (10)	NA	Q84K00	NAC domain-containing protein 78	AT5G24590.2	TCV-interacting protein 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.1212.1.A1_s_at	A	A1TS	POPTR_0012s00760	POPTR_0012s00760 (11)	scaffold_12:425726-425997(-) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G24590.2	TCV-interacting protein 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr5g077660.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.121212.1.A1_at	A	A1TS	POPTR_0005s18690	POPTR_0005s18690 (11)	scaffold_5:16931875-16932308(-) (11)	NA	O22187	Probable receptor-like protein kinase At2g23200	AT2G23200.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.121221.1.A1_at	A	A1TS	POPTR_0005s18530	POPTR_0005s18530 (10)	scaffold_5:16761295-16762001(-) (10)	NA	O48670	Protein RER1A	AT4G39220.1	Rer1 family protein 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr5g016490.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
PtpAffx.121222.1.A1_at	A	A1TS	POPTR_0008s06630	POPTR_0008s06630 (11)	scaffold_8:3972789-3974023(+) (11)	NA	Q5N892	Auxin transporter-like protein 1	AT5G01240.1	like AUXIN RESISTANT 1 	LOC_Os01g63770.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g024670.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121225.1.A1_at	A	A1TS	POPTR_0001s25550	POPTR_0001s25550 (11)	scaffold_1:24623242-24623427(+) (11)	NA	Q9SS80	"UPF0503 protein At3g09070, chloroplastic"	AT5G58930.1	Protein of unknown function (DUF740) 	LOC_Os01g63310.1	"DUF740 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121254.1.A1_at	A	A1TS	POPTR_0008s17100	POPTR_0008s17100 (11)	scaffold_1243:6021-6103(+) (11)//scaffold_8:11491626-11491708(-) (11)	NA	Q03389	Eukaryotic translation initiation factor 4E-2	AT5G35620.1	Eukaryotic initiation factor 4E protein 	LOC_Os10g32970.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr1g065250.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
PtpAffx.121256.1.A1_at	A	A1MS	POPTR_0008s09190	POPTR_0008s09190 (11)	scaffold_8:5687069-5687574(+) (11)	NA	NA	NA	AT1G69380.1	Protein of unknown function (DUF155) 	LOC_Os07g49410.1	"uncharacterized ACR, YagE family COG1723 containing protein, expressed"	Medtr5g046070.1	Protein of unknown function DUF155 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12126.1.A1_at	A	A1TS	POPTR_0004s22000	POPTR_0004s22000 (11)	scaffold_4:20954266-20954760(+) (11)	NA	NA	NA	AT3G45230.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g110460.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12126.2.A1_at	A	A1TA	POPTR_0004s22000	POPTR_0004s22000 (11)	scaffold_4:20953947-20954465(-) (11)	NA	NA	NA	AT3G45230.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g110460.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121264.1.A1_at	A	A1TS	POPTR_0013s13680	POPTR_0013s13680 (11)	scaffold_13:14102791-14102833(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121265.1.A1_s_at	A	A1TS	POPTR_0006s05550	POPTR_0006s05550 (11)	scaffold_6:3919575-3919611(-) (11)	NA	NA	NA	AT2G42320.2	nucleolar protein gar2-related 	LOC_Os08g39490.3	expressed protein	Medtr7g111110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12127.1.A1_at	A	A1TS	POPTR_0014s07030	POPTR_0014s07030 (11)	scaffold_14:5311963-5312971(-) (11)	NA	Q0KHU5	1-acylglycerophosphocholine O-acyltransferase 1	AT2G45670.1	calcineurin B subunit-related 	LOC_Os06g49790.1	"acyltransferase, putative, expressed"	AC233100_19.1	Calcium-binding EF-hand AC233100.6 72825-70913 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.121275.1.A1_at	A	A1MS	POPTR_0014s03580	POPTR_0014s03580 (11)	scaffold_14:2864228-2864663(+) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os12g30040.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr2g014200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121276.1.A1_at	A	A1TS	POPTR_0019s03920	POPTR_0019s03920 (11)	scaffold_19:3973866-3979390(+) (10)//scaffold_19:4000490-4001094(+) (11)	POPTR_0019s03900 (8)//POPTR_0019s03940 (7)//POPTR_0019s03890 (6)	Q9FYZ9	Benzoate carboxyl methyltransferase	AT5G04370.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50610.1	"SAM dependent carboxyl methyltransferase, putative, expressed"	Medtr5g020860.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.121282.1.A1_at	A	A1TS	POPTR_0005s17170	POPTR_0005s17170 (11)	scaffold_5:14325800-14326370(+) (11)	NA	Q9D2H9	Leucine-rich repeat-containing protein 50	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.12129.1.S1_at	A	A1TS	POPTR_0008s01530	POPTR_0008s01530 (11)	scaffold_8:757421-757937(+) (11)	NA	Q06850	Calcium-dependent protein kinase 1	AT5G04870.1	calcium dependent protein kinase 1 	LOC_Os03g57450.1	"CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.121292.1.A1_at	A	A1TS	POPTR_0005s18390	POPTR_0005s18390 (11)	scaffold_5:16560046-16561492(+) (11)	NA	Q5T2D3	OTU domain-containing protein 3	AT5G67170.1	SEC-C motif-containing protein / OTU-like cysteine protease family protein 	LOC_Os04g57480.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr2g107500.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1213.1.S1_a_at	A	A2TS	POPTR_0002s06160	POPTR_0002s06160 (11)//POPTR_0005s22280 (11)	scaffold_2:4118102-4118568(+) (11)//scaffold_5:21253722-21254183(-) (11)	NA	NA	NA	AT2G42840.1	protodermal factor 1 	LOC_Os01g52690.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g099070.1	"DNA-directed RNA polymerase II subunit RPB1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1213.3.A1_a_at	A	A1TS	POPTR_0005s22280	POPTR_0005s22280 (11)	scaffold_5:21254362-21254532(-) (11)	NA	NA	NA	AT2G42840.1	protodermal factor 1 	LOC_Os01g52690.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g099070.1	"DNA-directed RNA polymerase II subunit RPB1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1213.3.A1_at	A	A1MS	POPTR_0005s22280	POPTR_0005s22280 (11)	scaffold_5:21254584-21254817(-) (11)	NA	NA	NA	AT2G42840.1	protodermal factor 1 	LOC_Os01g52690.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g099070.1	"DNA-directed RNA polymerase II subunit RPB1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121304.1.S1_s_at	A	A1TS	POPTR_0010s14810	POPTR_0010s14810 (10)	scaffold_10:14287336-14288270(+) (10)	NA	Q9JHB5	Translin-associated protein X	AT2G03780.1	Translin family protein 	LOC_Os01g16100.1	"translin, putative, expressed"	Medtr8g077500.1	Translin 	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.121305.1.A1_at	A	A1TS	POPTR_0007s15240	POPTR_0007s15240 (11)	scaffold_7:14852804-14853532(+) (11)	NA	NA	NA	AT1G78930.1	Mitochondrial transcription termination factor family protein 	LOC_Os09g38720.1	"mTERF domain containing protein, expressed"	Medtr4g095610.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121321.1.A1_at	A	A1TS	POPTR_0004s21790	POPTR_0004s21790 (11)	scaffold_4:20792791-20793549(-) (11)	NA	Q99JW2	Aminoacylase-1	AT4G38220.2	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046740.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.121340.1.A1_a_at	A	A1TS	POPTR_0019s05790	POPTR_0019s05790 (11)	scaffold_19:6196435-6196505(+) (11)	NA	Q59MG1	Diphthamide biosynthesis protein 1	AT5G62030.1	diphthamide synthesis DPH2 family protein 	LOC_Os02g57050.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr5g008080.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121340.1.A1_at	A	A1TS	POPTR_0019s05790	POPTR_0019s05790 (11)	scaffold_19:6198315-6198588(+) (11)	NA	Q59MG1	Diphthamide biosynthesis protein 1	AT5G62030.1	diphthamide synthesis DPH2 family protein 	LOC_Os02g57050.1	"diphthamide biosynthesis protein, putative, expressed"	Medtr5g008080.1	Diphthamide synthesis DPH2 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121346.1.A1_at	A	A1MS	POPTR_0009s02040	POPTR_0009s02040 (11)	scaffold_9:2666251-2666707(-) (11)	NA	Q680Q4	E3 SUMO-protein ligase SIZ1	AT5G60410.5	"DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain "	LOC_Os05g03430.2	"ATSIZ1/SIZ1, putative, expressed"	Medtr4g080810.1	"DNA-binding SAP; Zinc finger, MIZ-type; Zinc finger, FYVE/PHD-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.121349.1.A1_at	A	A1TS	POPTR_0006s09500	POPTR_0006s09500 (11)	scaffold_6:6982677-6983103(+) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT3G54030.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121349.2.A1_at	A	A1TS	POPTR_0016s09970	POPTR_0016s09970 (10)	scaffold_16:8099691-8099732(-) (10)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT3G54030.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121349.2.A1_s_at	A	A1TS	POPTR_0016s09970	POPTR_0016s09970 (11)	scaffold_16:8099265-8099704(-) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT3G54030.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr7g084970.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121350.1.S1_at	A	A1TS	POPTR_0010s24110	POPTR_0010s24110 (11)	scaffold_10:20484465-20485919(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G03730.1	Protein kinase superfamily protein 	LOC_Os02g32610.3	"protein kinase domain containing protein, expressed"	Medtr5g075410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.121356.1.A1_at	A	A1MS	POPTR_0006s02840	POPTR_0006s02840 (11)	scaffold_6:1786138-1786269(-) (11)	NA	Q93YF5	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1"	AT1G73100.1	SU(VAR)3-9 homolog 3 	LOC_Os05g41172.2	"histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed"	Medtr7g105180.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.121359.1.A1_s_at	A	A1TS	POPTR_0006s26120	POPTR_0006s26120 (11)	scaffold_6:24390357-24391835(-) (11)	NA	NA	NA	AT1G18950.1	DDT domain superfamily 	LOC_Os01g08550.1	"aminoacyl-tRNA synthetase, putative, expressed"	Medtr3g135760.1	"aminoacyl-tRNA synthetase family, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121369.1.A1_at	A	A1TS	POPTR_0013s00860	POPTR_0013s00860 (11)	scaffold_13:433040-435020(-) (11)	NA	B5DEQ3	Probable Xaa-Pro aminopeptidase 3	AT1G09300.1	Metallopeptidase M24 family protein 	LOC_Os12g37640.1	"xaa-Pro aminopeptidase, putative, expressed"	NA	NA	GO:0009987|cellular process	GO:0004177|aminopeptidase activity||GO:0030145|manganese ion binding	NA
PtpAffx.121380.1.A1_at	A	A1TS	POPTR_0014s16780	POPTR_0014s16780 (11)	scaffold_14:12852617-12853765(+) (11)	NA	NA	NA	AT3G07660.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os09g08670.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr5g077880.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121381.1.A1_at	A	A1TS	POPTR_0010s04710	POPTR_0010s04710 (11)	scaffold_10:5816635-5816989(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121383.1.A1_at	A	A1TS	POPTR_0004s23580	POPTR_0004s23580 (11)	scaffold_4:22259844-22260547(+) (11)	NA	Q69ZF3	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.121389.1.A1_at	A	A1TS	POPTR_0014s15060	POPTR_0014s15060 (11)	scaffold_14:11130032-11130507(-) (11)//scaffold_14:11154927-11155402(-) (11)	NA	Q8GXJ4	Glutamate receptor 3.4	AT1G05200.2	glutamate receptor 3.4 	LOC_Os07g33790.1	"glutamate receptor 3.4 precursor, putative, expressed"	Medtr2g103920.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121396.1.A1_at	A	A1MS	POPTR_0009s15330	POPTR_0009s15330 (9)	scaffold_9:11889215-11889913(-) (10)	NA	P27237	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121406.1.A1_at	A	A1MS	POPTR_0018s12190	POPTR_0018s12190 (11)	scaffold_18:12745554-12746008(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121406.1.A1_s_at	A	A1TS	POPTR_0018s12190	POPTR_0018s12190 (10)	scaffold_18:12745446-12745940(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121418.1.A1_s_at	A	A1TS	POPTR_0006s07240	POPTR_0006s07240 (11)	scaffold_6:5198384-5198901(-) (11)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.121418.2.A1_at	A	A1TS	POPTR_0006s07240	POPTR_0006s07240 (11)	scaffold_6:5198907-5199092(-) (11)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.121420.1.A1_at	A	A1TS	POPTR_0003s05550	POPTR_0003s05550 (9)	scaffold_3:6874357-6874730(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121428.1.A1_s_at	A	A1TS	POPTR_0003s13720	POPTR_0003s13720 (11)	scaffold_3:14029503-14029719(+) (11)	NA	NA	NA	AT5G41790.1	COP1-interactive protein 1 	NA	NA	Medtr5g009510.1	hypothetical protein 	GO:0016032|viral reproduction	NA	NA
PtpAffx.121441.1.A1_at	A	A1TS	POPTR_0001s12260	POPTR_0001s12260 (11)	scaffold_1:9496373-9496840(+) (11)	NA	Q8WV16	DDB1- and CUL4-associated factor 4	AT5G17370.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g01730.1	"WD-40 repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121447.1.S1_at	A	A1TS	POPTR_0011s15660	POPTR_0011s15660 (11)	scaffold_11:17752863-17753589(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.121458.1.A1_at	A	A1TS	POPTR_0011s13370	POPTR_0011s13370 (11)	scaffold_11:16130490-16130524(-) (11)	NA	Q9LHQ7	mRNA cap guanine-N7 methyltransferase 1	AT3G20650.1	mRNA capping enzyme family protein 	LOC_Os08g08200.1	"mRNA cap guanine-N7 methyltransferase 1, putative, expressed"	Medtr7g133520.1	"mRNA capping enzyme, large subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0008168|methyltransferase activity	NA
PtpAffx.121458.1.A1_s_at	A	A1TS	POPTR_0011s13370	POPTR_0011s13370 (11)	scaffold_11:16130306-16131498(-) (11)	NA	Q9LHQ7	mRNA cap guanine-N7 methyltransferase 1	AT3G20650.1	mRNA capping enzyme family protein 	LOC_Os08g08200.1	"mRNA cap guanine-N7 methyltransferase 1, putative, expressed"	Medtr7g133520.1	"mRNA capping enzyme, large subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0008168|methyltransferase activity	NA
PtpAffx.12146.1.A1_a_at	A	A1TS	POPTR_0006s26660	POPTR_0006s26660 (11)	scaffold_6:24812041-24812635(+) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.12146.2.A1_at	A	A1TS	POPTR_0006s26650	POPTR_0006s26650 (11)	scaffold_6:24806390-24806427(-) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.12146.3.A1_at	A	A1TS	POPTR_0018s01400	POPTR_0018s01400 (11)	scaffold_18:1350675-1350871(-) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.12146.6.A1_at	A	A1TS	POPTR_0006s26650	POPTR_0006s26650 (10)	scaffold_6:24806617-24806682(-) (10)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.121479.1.A1_at	A	A1MS	POPTR_0017s08300	POPTR_0017s08300 (11)	scaffold_17:6757970-6758886(-) (11)	NA	Q9SFU3	Purple acid phosphatase 15	AT3G07130.1	purple acid phosphatase 15 	LOC_Os03g63074.2	"Ser/Thr protein phosphatase family protein, expressed"	Medtr3g105420.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.12148.1.S1_at	A	A1TS	POPTR_0003s09390	POPTR_0003s09390 (11)	scaffold_3:10687056-10687685(+) (11)	NA	Q60GF7	Phosphatidylinositol-glycan biosynthesis class X protein	AT5G46850.3	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: GPI anchor biosynthetic process; LOCATED IN: endomembrane system, endoplasmic reticulum membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PIG-X/PBN1 (InterPro:IPR013233). "	LOC_Os12g40500.2	expressed protein	Medtr8g077670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121495.1.A1_at	A	A1TS	POPTR_0003s10850	POPTR_0003s10850 (11)	scaffold_3:11712493-11712718(-) (11)	NA	P83436	Conserved oligomeric Golgi complex subunit 7	AT5G51430.1	conserved oligomeric Golgi complex component-related / COG complex component-related 	LOC_Os06g45830.1	expressed protein	Medtr6g005500.1	"conserved oligomeric Golgi complex component 7-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121503.1.A1_s_at	A	A1TS	POPTR_0008s09640	POPTR_0008s09640 (11)	scaffold_8:5956616-5958872(+) (11)	NA	Q14562	ATP-dependent RNA helicase DHX8	AT1G26370.1	RNA helicase family protein 	LOC_Os06g09280.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.121507.1.A1_at	A	A1MA	POPTR_0008s08700	POPTR_0008s08700 (11)	scaffold_8:5371294-5371790(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121515.1.A1_at	A	A2TS	POPTR_0001s25680	POPTR_0009s04830 (11)//POPTR_0001s25680 (11)	scaffold_1:24732665-24732998(+) (11)//scaffold_9:5071102-5071442(+) (11)	NA	P48422	Cytochrome P450 86A1	AT5G58860.1	"cytochrome P450, family 86, subfamily A, polypeptide 1 "	LOC_Os01g63540.1	"cytochrome P450, putative, expressed"	Medtr5g078460.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.121536.1.A1_at	A	A1TS	POPTR_0008s20510	POPTR_0008s20510 (11)	scaffold_8:14271527-14272618(+) (11)	NA	Q6IQ16	Speckle-type POZ protein-like	AT3G06190.1	BTB-POZ and MATH domain 2 	LOC_Os07g46160.1	"MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr1g086790.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.121543.1.A1_at	A	A1TS	POPTR_0019s12320	POPTR_0019s12320 (11)	scaffold_19:13380440-13380984(-) (11)	NA	O49675	"Probable carotenoid cleavage dioxygenase 4, chloroplastic"	AT4G19170.1	nine-cis-epoxycarotenoid dioxygenase 4 	LOC_Os02g47510.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121547.1.A1_at	A	A1TS	POPTR_0003s16730	POPTR_0003s16730 (11)	scaffold_3:16261773-16261933(+) (11)	NA	Q9Y222	Cyclin-D-binding Myb-like transcription factor 1	AT5G41020.1	myb family transcription factor 	LOC_Os06g19980.1	"MYB family transcription factor, putative, expressed"	Medtr8g093700.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121550.1.A1_s_at	A	A1TS	POPTR_0014s01970	POPTR_0014s01970 (11)	scaffold_14:1760705-1760756(-) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC232874_16.1	"VEP1 ; binding, putative AC232874.1 54537-55990 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121556.1.A1_at	A	A1TS	POPTR_0014s09610	POPTR_0014s09610 (11)	scaffold_14:7170578-7170644(+) (11)	NA	Q9ZPY2	Laccase-6	AT2G46570.1	laccase 6 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g078230.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.121560.1.A1_at	A	A1TS	POPTR_0007s07110	POPTR_0007s07110 (11)	scaffold_7:5434422-5434910(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121561.1.A1_at	A	A1TS	POPTR_0002s09090	POPTR_0002s09090 (11)	scaffold_2:6430813-6431295(-) (11)	NA	NA	NA	AT1G22030.1	CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77855.1); Has 99 Blast hits to 99 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g01400.1	expressed protein	Medtr4g137320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121567.1.A1_at	A	A1TS	POPTR_0005s15290	POPTR_0005s15290 (11)	scaffold_5:12040344-12040777(+) (11)	NA	Q6DEY3	Abhydrolase domain-containing protein FAM108B1	AT5G38220.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g49510.1	"OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g015480.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121590.1.A1_s_at	A	A1TS	POPTR_0008s17920	POPTR_0008s17920 (11)	scaffold_8:12030376-12030833(-) (11)	NA	Q6GNY1	E3 ubiquitin-protein ligase mib1	AT3G01750.1	Ankyrin repeat family protein 	LOC_Os05g23320.2	expressed protein	Medtr3g103280.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121599.1.A1_at	A	A1TS	POPTR_0009s07300	POPTR_0009s07300 (11)	scaffold_9:6847041-6849804(-) (11)	NA	P34893	10 kDa chaperonin	AT1G14980.1	chaperonin 10 	LOC_Os03g25050.1	"chaperonin, putative, expressed"	AC225518_13.1	GroES-like AC225518.12 38278-37581 E EGN_Mt090430 200	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.121609.1.A1_at	A	A1TS	POPTR_0002s12020	POPTR_0002s12020 (11)	scaffold_2:8939984-8940506(+) (11)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr5g015970.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121626.1.A1_at	A	A1TS	POPTR_0010s17650	POPTR_0010s17650 (11)	scaffold_10:16157553-16157989(+) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT1G69600.1	zinc finger homeodomain  1 	LOC_Os09g24820.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr7g009640.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121632.1.A1_s_at	A	A1TS	POPTR_0019s05380	POPTR_0019s05380 (10)	scaffold_19:5722691-5722973(-) (10)	NA	NA	NA	AT3G62800.2	double-stranded-RNA-binding protein 4 	LOC_Os01g56520.2	"double-stranded RNA binding motif containing protein, expressed"	Medtr7g140190.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.121639.1.A1_s_at	A	A1TS	POPTR_0005s10350	POPTR_0005s10350 (11)	scaffold_5:7425424-7426700(+) (11)	NA	A1L244	Phosphatidylinositide phosphatase SAC1-A	AT3G51460.1	Phosphoinositide phosphatase family protein 	LOC_Os02g34884.1	"SacI homology domain containing protein, expressed"	Medtr5g023860.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121651.1.A1_at	A	A1TS	POPTR_0015s04600	POPTR_0015s04600 (10)	scaffold_15:4804821-4805040(-) (10)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121654.1.A1_at	A	A1TS	POPTR_0001s02140	POPTR_0001s02140 (11)	scaffold_1:1587014-1587301(-) (11)	NA	Q9LQM7	Heat stress transcription factor A-1d	AT1G32330.1	heat shock transcription factor A1D 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.121661.1.A1_s_at	A	A1TS	POPTR_0012s07900	POPTR_0012s07900 (11)	scaffold_12:8885540-8886216(+) (11)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50850.1	"BAH domain containing protein, putative, expressed"	Medtr4g149410.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
PtpAffx.12167.1.S1_at	A	A1MS	POPTR_0010s17130	POPTR_0010s17130 (10)	scaffold_10:15858676-15859157(-) (10)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G69450.2	Early-responsive to dehydration stress protein (ERD4) 	LOC_Os12g39320.1	"DUF221 domain containing protein, expressed"	Medtr5g045580.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.121690.1.A1_at	A	A1TS	POPTR_0001s05620	POPTR_0001s05620 (10)	scaffold_1:4343890-4344170(+) (10)	NA	Q940Q3	Zinc transporter ZTP29	AT3G20870.1	ZIP metal ion transporter family 	LOC_Os02g10230.1	"metal cation transporter, putative, expressed"	Medtr4g087400.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.121699.1.A1_at	A	A1TS	POPTR_0012s01190	POPTR_0012s01190 (11)	scaffold_12:810623-813410(+) (11)	NA	NA	NA	AT5G52960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3143 (InterPro:IPR021489); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os05g49410.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121700.1.A1_at	A	A1MS	POPTR_0008s15930	POPTR_0008s15930 (11)	scaffold_8:10627899-10628310(-) (11)	NA	NA	NA	AT3G55760.3	unknown protein; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42430.2). 	LOC_Os11g37560.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121714.1.S1_at	A	A1TS	POPTR_0002s09000	POPTR_0002s09000 (11)	scaffold_2:6374915-6375325(+) (11)	NA	Q9NQC1	Protein Jade-2	AT1G77800.2	PHD finger family protein 	LOC_Os02g52960.1	"PHD-finger domain containing protein, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0007242|intracellular signaling cascade||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	NA	NA
PtpAffx.121730.1.A1_at	A	A1TS	POPTR_0007s11830	POPTR_0007s11830 (10)	scaffold_7:12214520-12214770(+) (10)	NA	Q8LGM7	Molybdenum cofactor sulfurase	AT2G23520.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g55704.1	expressed protein	Medtr1g129690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12176.1.S1_a_at	A	A1TS	POPTR_0013s06850	POPTR_0013s06850 (11)	scaffold_13:5538815-5539838(+) (11)	NA	O04350	Tubulin-specific chaperone A	AT2G30410.2	tubulin folding cofactor A (KIESEL) 	LOC_Os02g57150.1	"tubulin-specific chaperone A, putative, expressed"	Medtr5g101740.1	Tubulin binding cofactor A 	GO:0007021|tubulin complex assembly	GO:0051082|unfolded protein binding	GO:0005874|microtubule
PtpAffx.12176.2.A1_at	A	A1TS	POPTR_0013s06920	POPTR_0013s06920 (10)	scaffold_13:5615280-5617024(+) (10)	NA	Q923G2	"DNA-directed RNA polymerases I, II, and III subunit RPABC3"	AT3G59600.1	RNA polymerase Rpb8 	LOC_Os06g48230.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed"	Medtr8g147760.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	NA	NA
PtpAffx.12176.4.A1_a_at	A	A1TS	POPTR_0013s06850	POPTR_0013s06850 (11)	scaffold_13:5538572-5539689(+) (11)	NA	O04350	Tubulin-specific chaperone A	AT2G30410.2	tubulin folding cofactor A (KIESEL) 	LOC_Os02g57150.1	"tubulin-specific chaperone A, putative, expressed"	Medtr5g101740.1	Tubulin binding cofactor A 	GO:0007021|tubulin complex assembly	GO:0051082|unfolded protein binding	GO:0005874|microtubule
PtpAffx.121761.1.A1_at	A	A1MS	POPTR_0004s21820	POPTR_0004s21820 (11)	scaffold_4:20818277-20818530(+) (11)	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g106900.1	"Protein of unknown function DUF1981, SEC7 associated "	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.121774.1.A1_at	A	A1TS	POPTR_0001s33200	POPTR_0001s33200 (11)	scaffold_1:31400062-31400738(-) (11)	NA	O04147	Cyclic phosphodiesterase	AT4G18930.1	RNA ligase/cyclic nucleotide phosphodiesterase family protein 	LOC_Os05g44170.1	"cyclic phosphodiesterase, putative, expressed"	Medtr4g136340.1	Appr>p cyclic nucleotide phosphodiesterase 	NA	GO:0004112|cyclic-nucleotide phosphodiesterase activity	NA
PtpAffx.121779.1.S1_at	A	A1TS	POPTR_0010s00780	POPTR_0010s00780 (9)	scaffold_10:488453-489861(+) (9)	NA	Q9LRZ3	Pumilio homolog 24	AT3G16810.1	pumilio 24 	LOC_Os03g61560.1	expressed protein	NA	NA	NA	GO:0003723|RNA binding	NA
PtpAffx.121787.1.A1_at	A	A1TS	POPTR_0016s08640	POPTR_0016s08640 (11)	scaffold_16:6456941-6457334(+) (11)	NA	Q9LYZ7	E3 ubiquitin-protein ligase UPL4	AT5G02880.1	ubiquitin-protein ligase 4 	LOC_Os05g03100.1	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.12180.1.A1_at	A	A1TS	POPTR_0002s21550	POPTR_0002s21550 (11)	scaffold_2:18067374-18067770(-) (11)	NA	Q8RW96	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	AT4G15415.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g62730.3	"transposon protein, putative, unclassified, expressed"	Medtr3g110300.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.12180.2.S1_at	A	A1TS	POPTR_0014s15520	POPTR_0014s15520 (11)	scaffold_14:11556702-11557084(-) (11)	NA	Q8RW96	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	AT4G15415.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os03g62730.3	"transposon protein, putative, unclassified, expressed"	Medtr3g110300.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121812.1.A1_at	A	A1TS	POPTR_0019s02680	POPTR_0019s02680 (11)	scaffold_19:2482868-2483063(+) (11)//scaffold_19:2556262-2556461(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121821.1.S1_at	A	A1TS	POPTR_0011s15230	POPTR_0011s15230 (11)	scaffold_11:17342685-17343277(+) (11)	NA	Q7GCL7	NAC domain-containing protein 74	AT1G33060.2	NAC 014 	LOC_Os08g06140.1	"no apical meristem protein, putative, expressed"	Medtr3g122340.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.12184.1.S1_a_at	A	A1TS	POPTR_0010s00680	POPTR_0010s00680 (11)	scaffold_10:389095-389148(+) (11)	NA	Q8W191	Transcription factor HY5-like	AT3G17609.2	HY5-homolog 	LOC_Os02g10860.1	bZIP transcription factor domain containing protein	AC146793_14.1	"bZIP transcription factor, bZIP_1 AC146793.7 78592-81181 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.12184.1.S1_at	A	A1TS	POPTR_0010s00680	POPTR_0010s00680 (11)	scaffold_10:389287-389571(+) (11)	NA	Q8W191	Transcription factor HY5-like	AT3G17609.2	HY5-homolog 	LOC_Os02g10860.1	bZIP transcription factor domain containing protein	AC146793_14.1	"bZIP transcription factor, bZIP_1 AC146793.7 78592-81181 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.121872.1.S1_at	A	A1TS	POPTR_0005s15220	POPTR_0005s15220 (11)	scaffold_5:11986519-11987024(+) (11)	NA	Q9ZDC7	Putative glutamine amidotransferase-like protein RP404	AT5G38200.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os01g04620.3	"transposon protein, putative, unclassified, expressed"	Medtr7g093720.1	Peptidase C26 	GO:0006541|glutamine metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.121878.1.S1_at	A	A1TS	POPTR_0011s05750	POPTR_0011s05750 (9)	scaffold_11:5735766-5736153(-) (9)	NA	P32456	Interferon-induced guanylate-binding protein 2	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	GO:0006955|immune response	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.121886.1.S1_at	A	A1TS	POPTR_0012s12380	POPTR_0012s12380 (9)	scaffold_12:12667382-12670433(-) (9)	NA	Q949Q1	Probable galacturonosyltransferase 11	AT1G18580.1	galacturonosyltransferase 11 	LOC_Os03g30000.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g018990.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.121896.1.A1_at	A	A1TS	POPTR_0010s06490	POPTR_0010s06490 (9)	scaffold_10:7837898-7838248(-) (9)	NA	NA	NA	AT1G67660.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os04g40900.1	"exonuclease, putative"	Medtr2g103530.1	; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.121917.1.S1_s_at	A	A1TS	POPTR_0013s06710	POPTR_0013s06710 (11)	scaffold_13:5422576-5422832(+) (11)	NA	O80360	"50S ribosomal protein L3, chloroplastic (Fragment)"	AT2G43030.1	Ribosomal protein L3 family protein 	LOC_Os02g04460.1	"ribosomal protein L3, putative, expressed"	Medtr3g163790.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.12192.1.S1_at	A	A1TS	POPTR_0010s23710	POPTR_0010s23710 (11)	scaffold_10:20204227-20204647(-) (11)	NA	Q80WA4	RNA-binding protein Nova-1 (Fragment)	AT5G04430.1	binding to TOMV RNA 1L (long form) 	LOC_Os02g57640.1	"KH domain containing protein, putative, expressed"	AC235664_4.1	"KH, type 1 AC235664.1 14232-10980 E EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.12192.2.A1_at	A	A1TS	POPTR_0008s03070	POPTR_0008s03070 (11)	scaffold_8:1615967-1616405(+) (11)	NA	Q80WA4	RNA-binding protein Nova-1 (Fragment)	AT5G04430.1	binding to TOMV RNA 1L (long form) 	LOC_Os02g57640.1	"KH domain containing protein, putative, expressed"	AC235664_4.1	"KH, type 1 AC235664.1 14232-10980 E EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.12192.3.S1_at	A	A1TS	POPTR_0008s03070	POPTR_0008s03070 (11)	scaffold_8:1611972-1612917(+) (11)	NA	Q80WA4	RNA-binding protein Nova-1 (Fragment)	AT5G04430.1	binding to TOMV RNA 1L (long form) 	LOC_Os02g57640.1	"KH domain containing protein, putative, expressed"	AC235664_4.1	"KH, type 1 AC235664.1 14232-10980 E EGN_Mt090430 200"	NA	GO:0003723|RNA binding	NA
PtpAffx.12193.1.A1_at	A	A1TS	POPTR_0006s27210	POPTR_0006s27210 (11)	scaffold_6:25193897-25194092(-) (11)	NA	NA	NA	AT4G32160.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr3g137530.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.121931.1.S1_at	A	A1TS	POPTR_0001s01560	POPTR_0001s01560 (9)	scaffold_1:1164363-1164704(-) (9)	NA	Q9SAK5	Myb family transcription factor APL	AT5G45580.1	Homeodomain-like superfamily protein 	LOC_Os02g47190.1	"MYB family transcription factor, putative, expressed"	Medtr5g027610.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12194.1.A1_at	A	A1TS	POPTR_0004s12070	POPTR_0004s12070 (9)	scaffold_4:10979766-10980119(-) (9)//scaffold_996:557-910(-) (9)	NA	O67577	tRNA guanosine-2'-O-methyltransferase	AT5G15390.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os07g40700.2	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr7g011700.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.121966.1.S1_s_at	A	A1TS	POPTR_0019s11710	POPTR_0019s11710 (11)	scaffold_19:12956501-12957115(-) (11)	NA	Q7YR70	Angio-associated migratory cell protein	AT1G71840.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g48090.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g134960.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122007.1.S1_s_at	A	A1TS	POPTR_0010s12960	POPTR_0010s12960 (11)	scaffold_10:12888116-12890330(-) (11)	NA	Q05AM5	Elongator complex protein 2	AT1G49540.1	elongator protein 2 	LOC_Os08g38570.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12201.1.S1_at	A	A1TS	POPTR_0022s00670	POPTR_0022s00670 (11)	scaffold_22:307963-308578(-) (11)	NA	P35684	60S ribosomal protein L3	AT1G61580.1	R-protein L3 B 	LOC_Os11g06750.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.122044.1.S1_s_at	A	A1TS	POPTR_0004s24440	POPTR_0004s24440 (11)	scaffold_4:23109785-23111823(-) (11)	NA	Q8VZ67	Uncharacterized zinc finger CCHC domain-containing protein At4g19190	AT4G19190.1	zinc knuckle (CCHC-type) family protein 	LOC_Os06g49510.1	"zinc knuckle family protein, putative, expressed"	Medtr2g047090.1	"zinc knuckle family protein, putative "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.122051.1.S1_s_at	A	A1TS	POPTR_0014s12480	POPTR_0014s12480 (11)	scaffold_14:9190181-9190925(+) (11)	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122058.1.S1_at	A	A1TS	POPTR_0004s02720	POPTR_0004s02720 (11)	scaffold_4:1817720-1818235(+) (11)	NA	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT4G21380.1	receptor kinase 3 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011240.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12206.1.S1_s_at	A	A1TS	POPTR_0017s14520	POPTR_0017s14520 (11)	scaffold_17:14542316-14542633(-) (11)	NA	Q8L7E5	WPP domain-interacting tail-anchored protein 1	AT5G11390.1	WPP domain-interacting protein 1 	LOC_Os05g15140.1	expressed protein	Medtr7g015720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122079.1.S1_at	A	A1TS	POPTR_0001s20920	POPTR_0001s20920 (11)	scaffold_1:19139006-19143199(+) (11)	NA	NA	NA	AT3G15920.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr2g126770.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.122082.1.S1_at	A	A1TS	POPTR_0009s13540	POPTR_0009s13540 (10)	scaffold_9:10754886-10755912(+) (10)	NA	Q8LDP4	Peptidyl-prolyl cis-trans isomerase CYP19-4	AT4G34960.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os09g36670.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr3g093650.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.122088.1.S1_at	A	A1TS	POPTR_0008s15720	POPTR_0008s15720 (10)	scaffold_8:10482871-10483360(+) (10)	NA	Q8H185	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4"	AT5G43850.1	RmlC-like cupins superfamily protein 	LOC_Os03g06620.1	"1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed"	NA	NA	GO:0071267|L-methionine salvage||GO:0071265|L-methionine biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0019509|L-methionine salvage from methylthioadenosine||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction||GO:0009086|methionine biosynthetic process	GO:0046872|metal ion binding||GO:0051213|dioxygenase activity	NA
PtpAffx.122118.1.S1_s_at	A	A1TS	POPTR_0015s04140	POPTR_0015s04140 (11)	scaffold_15:4163389-4164320(+) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122160.1.A1_s_at	A	A1TS	POPTR_0010s18200	POPTR_0010s18200 (11)	scaffold_10:16539289-16539716(-) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT1G79380.1	Ca(2)-dependent phospholipid-binding protein (Copine) family 	LOC_Os08g04130.1	"copine-6, putative, expressed"	Medtr6g093150.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12217.1.A1_at	A	A1TS	POPTR_0012s00750	POPTR_0012s00750 (10)	scaffold_12:421926-422399(-) (10)	NA	O81641	IAA-amino acid hydrolase ILR1-like 3	AT5G54140.1	IAA-leucine-resistant (ILR1)-like 3 	LOC_Os04g44110.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
PtpAffx.12219.1.S1_s_at	A	A1TS	POPTR_0014s15830	POPTR_0014s15830 (11)	scaffold_14:11908853-11910419(-) (11)	NA	Q9SJB4	GDSL esterase/lipase At2g04570	AT2G04570.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os09g04710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr5g092140.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.12220.1.A1_at	A	A2TS	POPTR_0005s07500	POPTR_0005s07500 (11)//POPTR_1582s00200 (10)	scaffold_1582:61-512(+) (11)//scaffold_5:5118713-5119164(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22400.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr3g111140.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122209.1.S1_at	A	A1TS	POPTR_0009s14020	POPTR_0009s14020 (11)	scaffold_9:11066596-11067148(-) (11)	NA	Q2KI83	DnaJ homolog subfamily C member 17	AT5G23590.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os03g04400.1	"heat shock protein DnaJ, putative, expressed"	NA	NA	NA	GO:0031072|heat shock protein binding||GO:0003676|nucleic acid binding	NA
PtpAffx.122211.1.S1_s_at	A	A2TS	POPTR_0001s32280	POPTR_0001s32280 (11)//POPTR_0017s08270 (11)	scaffold_1:30676807-30677492(+) (11)//scaffold_17:6745681-6746856(+) (11)	NA	Q8W4N3	Ubiquitin carboxyl-terminal hydrolase 2	AT1G04860.1	ubiquitin-specific protease 2 	LOC_Os09g32740.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr3g105630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.12225.1.S1_at	A	A1TS	POPTR_0007s06620	POPTR_0007s06620 (11)	scaffold_7:5032614-5033048(+) (11)	NA	Q9LV93	ABC transporter F family member 5	AT5G64840.1	general control non-repressible 5 	LOC_Os11g39020.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g144690.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.12226.1.S1_at	A	A1TS	POPTR_0010s24630	POPTR_0010s24630 (11)	scaffold_10:20738690-20739168(-) (11)	NA	Q9M376	Vesicle-associated membrane protein 727	AT3G54300.2	vesicle-associated membrane protein 727 	LOC_Os08g44430.2	"vesicle-associated membrane protein 727, putative, expressed"	AC233577_38.1	Synaptobrevin AC233577.5 178836-175201 E EGN_Mt090430 200	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.12226.2.S1_at	A	A1TS	POPTR_0008s02030	POPTR_0008s02030 (9)	scaffold_8:980303-981213(+) (9)	NA	Q9M376	Vesicle-associated membrane protein 727	AT3G54300.2	vesicle-associated membrane protein 727 	LOC_Os08g44430.2	"vesicle-associated membrane protein 727, putative, expressed"	AC233577_38.1	Synaptobrevin AC233577.5 178836-175201 E EGN_Mt090430 200	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
PtpAffx.12232.1.A1_a_at	A	A1TS	POPTR_0010s16080	POPTR_0010s16080 (11)	scaffold_10:15130107-15131103(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12232.4.S1_at	A	A1MS	POPTR_0010s16070	POPTR_0010s16070 (9)	scaffold_10:15124348-15124553(+) (9)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122348.1.S1_at	A	A1TS	POPTR_0002s15020	POPTR_0002s15020 (9)	scaffold_2:11118746-11119211(+) (9)	NA	Q9Y6D5	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	AT3G60860.1	SEC7-like guanine nucleotide exchange family protein 	LOC_Os03g14260.2	"guanine nucleotide exchange family protein, putative, expressed"	Medtr5g107020.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
PtpAffx.122358.1.S1_s_at	A	A1TS	POPTR_0001s08620	POPTR_0001s08620 (11)	scaffold_1:6568395-6568999(-) (11)	NA	Q9S746	Protein HOTHEAD	AT1G12570.1	Glucose-methanol-choline (GMC) oxidoreductase family protein 	LOC_Os04g48400.1	"HOTHEAD precursor, putative, expressed"	Medtr5g011140.1	GMC oxidoreductase 	NA	"GO:0050660|FAD binding||GO:0016614|""oxidoreductase activity, acting on CH-OH group of donors"""	NA
PtpAffx.12239.1.A1_at	A	A1TS	POPTR_0001s07980	POPTR_0001s07980 (11)	scaffold_1:6035418-6035894(-) (11)	NA	NA	NA	AT4G22740.2	glycine-rich protein 	LOC_Os08g02460.1	expressed protein	Medtr8g106900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122394.1.S1_at	A	A1TS	POPTR_0001s21430	POPTR_0001s21430 (11)	scaffold_1:19891260-19891313(-) (11)	POPTR_0003s01730 (8)	A5JTQ3	Beta-xylosidase/alpha-L-arabinofuranosidase 2	AT5G64570.1	beta-D-xylosidase 4 	LOC_Os04g54810.1	"beta-D-xylosidase, putative, expressed"	Medtr2g008400.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.122394.1.S1_s_at	A	A1TS	POPTR_0001s21430	POPTR_0001s21430 (11)	scaffold_1:19890664-19891274(-) (11)	NA	A5JTQ3	Beta-xylosidase/alpha-L-arabinofuranosidase 2	AT5G64570.1	beta-D-xylosidase 4 	LOC_Os04g54810.1	"beta-D-xylosidase, putative, expressed"	Medtr2g008400.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.1224.2.S1_a_at	A	A1TS	POPTR_0013s03320	POPTR_0013s03320 (11)	scaffold_13:2029955-2030651(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122405.1.S1_s_at	A	A1TS	POPTR_0008s16710	POPTR_0008s16710 (11)	scaffold_8:11226708-11230038(+) (11)	NA	P0A9T5	Protein tas	AT1G04420.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os03g41510.2	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr1g043110.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.12241.1.A1_s_at	A	A2TS	POPTR_0012s00930	POPTR_0012s00950 (11)//POPTR_0012s00930 (11)	scaffold_12:598015-599129(-) (11)//scaffold_12:621208-622332(-) (11)	NA	NA	NA	AT3G19180.2	paralog of ARC6 	LOC_Os04g57920.1	"OsFBX154 - F-box domain containing protein, expressed"	Medtr6g089760.1	"ARC6H, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122427.1.S1_at	A	A1TS	POPTR_0279s00200	POPTR_0279s00200 (11)	scaffold_279:15108-15280(-) (11)	NA	Q15GI4	Eugenol synthase 1	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g009310.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.12243.1.A1_s_at	A	A1TS	POPTR_0010s18010	POPTR_0010s18010 (11)	scaffold_10:16409818-16410141(+) (11)	NA	NA	NA	AT1G79510.2	Uncharacterized conserved protein (DUF2358) 	LOC_Os04g52330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12244.1.A1_at	A	A1TS	POPTR_0008s11610	POPTR_0008s11610 (11)	scaffold_8:7408523-7409007(+) (11)	NA	Q9FV52	"Methionine aminopeptidase 1B, chloroplastic"	AT1G13270.1	methionine aminopeptidase 1B 	LOC_Os04g52100.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g069010.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.122475.1.A1_at	A	A1TS	POPTR_0002s01190	POPTR_0002s01190 (11)	scaffold_2:629855-631161(+) (11)	NA	Q2KIG3	Carboxypeptidase B2	AT5G42320.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os02g02710.1	"zinc carboxypeptidase family protein, putative, expressed"	NA	NA	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004181|metallocarboxypeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.12249.1.S1_at	A	A1TS	POPTR_0015s12830	POPTR_0015s12830 (11)	scaffold_15:13038651-13039095(-) (11)	NA	Q5N2J3	Sec-independent protein translocase protein tatA/E homolog	AT5G52440.1	Bacterial sec-independent translocation protein mttA/Hcf106 	LOC_Os11g37130.1	"mttA/Hcf106 family protein, putative, expressed"	Medtr1g126690.1	Twin-arginine translocation protein TatA/E 	GO:0015031|protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.122496.1.S1_at	A	A1TS	POPTR_0019s13420	POPTR_0019s13420 (11)	scaffold_19:14344793-14345313(+) (11)	NA	Q8GY60	Probable protein phosphatase 2C 52	AT4G03415.2	Protein phosphatase 2C family protein 	LOC_Os07g37890.1	"protein phosphatase 2C, putative, expressed"	Medtr4g045040.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1225.1.S1_at	A	A1TS	POPTR_0010s05100	POPTR_0010s05100 (10)	scaffold_10:6503680-6504129(-) (10)	NA	NA	NA	AT1G23710.1	Protein of unknown function (DUF1645) 	NA	NA	Medtr5g035550.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122510.1.S1_at	A	A1TS	POPTR_0001s04230	POPTR_0001s04230 (10)	scaffold_1:3345567-3346890(+) (10)	NA	Q6NLS8	"Peptidyl-tRNA hydrolase, mitochondrial"	AT5G19830.1	Peptidyl-tRNA hydrolase family protein 	LOC_Os03g22610.2	"peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed"	Medtr4g134300.1	Peptidyl-tRNA hydrolase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004045|aminoacyl-tRNA hydrolase activity	NA
PtpAffx.122511.1.S1_at	A	A1TS	POPTR_0018s06380	POPTR_0018s06380 (11)	scaffold_18:6207808-6209788(-) (11)	NA	NA	NA	AT2G26900.1	Sodium Bile acid symporter family 	LOC_Os01g45750.1	"bile acid sodium symporter family protein, putative, expressed"	Medtr8g118790.2	Bile acid:sodium symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122514.1.S1_s_at	A	A1TS	POPTR_0017s12290	POPTR_0017s12290 (11)	scaffold_17:12512571-12512915(-) (11)	NA	Q9FKA5	Uncharacterized protein At5g39570	AT5G39570.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g12580.1	"pro-resilin precursor, putative, expressed"	Medtr6g013300.1	"Stress protein DDR48, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12253.1.A1_at	A	A1TS	POPTR_0005s10500	POPTR_0005s10500 (11)	scaffold_5:7550894-7551220(+) (11)	NA	NA	NA	AT4G35510.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17540.3); Has 182 Blast hits to 179 proteins in 73 species: Archae - 0; Bacteria - 87; Metazoa - 17; Fungi - 9; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12253.2.S1_at	A	A1TS	POPTR_0012s06400	POPTR_0012s06400 (10)	scaffold_12:6768228-6768617(+) (10)	NA	NA	NA	AT4G35510.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17540.3); Has 182 Blast hits to 179 proteins in 73 species: Archae - 0; Bacteria - 87; Metazoa - 17; Fungi - 9; Plants - 50; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). 	LOC_Os06g51240.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122535.1.S1_at	A	A1TS	POPTR_0001s17500	POPTR_0001s17500 (11)	scaffold_1:14289917-14290984(+) (11)	NA	Q99685	Monoglyceride lipase	AT1G52760.1	lysophospholipase 2 	LOC_Os02g11720.1	"lipase, putative, expressed"	Medtr8g129890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122552.1.S1_at	A	A1TS	POPTR_0004s07400	POPTR_0004s07400 (11)	scaffold_4:6103607-6103950(+) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT5G37310.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.122552.2.S1_at	A	A1TS	POPTR_0017s01490	POPTR_0017s01490 (11)	scaffold_17:1031068-1031283(+) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT2G01970.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.122552.2.S1_s_at	A	A1TS	POPTR_0017s01490	POPTR_0017s01490 (11)	scaffold_17:1030894-1031213(+) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT2G01970.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.122552.5.S1_at	A	A1TS	POPTR_0004s07390	POPTR_0004s07390 (11)	scaffold_4:6096402-6096737(+) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT5G37310.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.122552.6.S1_at	A	A1TS	POPTR_0017s01480	POPTR_0017s01480 (9)	scaffold_17:1021269-1021340(+) (9)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT5G37310.1	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr6g078180.1	"Nonaspanin (TM9SF); Carbamoyl-phosphate synthase L chain, ATP-binding "	NA	NA	GO:0016021|integral to membrane
PtpAffx.122552.7.S1_s_at	A	A1TS	POPTR_0019s09350	POPTR_0019s09350 (11)	scaffold_19:10923499-10923683(+) (11)	NA	NA	NA	AT2G40815.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	NA	NA	Medtr5g077910.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122568.1.S1_s_at	A	A1TS	POPTR_0009s06290	POPTR_0009s06290 (11)	scaffold_9:6085458-6086824(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G19440.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g34480.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g012700.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.122575.1.S1_at	A	A1TS	POPTR_0015s13600	POPTR_0015s13600 (10)	scaffold_15:13478721-13479859(+) (10)	NA	O88828	"DNA-directed RNA polymerases I, II, and III subunit RPABC2"	AT5G51940.1	RNA polymerase Rpb6 	LOC_Os03g38960.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr7g111100.1	60 kDa inner membrane insertion protein 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006351|""transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.122577.1.S1_at	A	A1TS	POPTR_0004s16460	POPTR_0004s16460 (9)	scaffold_4:16919300-16919521(+) (9)	NA	NA	NA	AT4G34560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g096180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122583.1.S1_at	A	A1TS	POPTR_0003s14550	POPTR_0003s14550 (11)	scaffold_3:14605946-14606679(-) (11)	NA	Q6N075	Major facilitator superfamily domain-containing protein 5	AT1G64650.1	Major facilitator superfamily protein 	LOC_Os03g02380.1	"major facilitator superfamily domain-containing protein 5, putative, expressed"	Medtr3g123410.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122584.1.S1_at	A	A1TS	POPTR_0007s08410	POPTR_0007s08410 (11)	scaffold_7:7227629-7228873(+) (11)	NA	P25586	Ribosomal RNA assembly protein KRR1	AT5G08420.1	RNA-binding KH domain-containing protein 	LOC_Os10g31520.1	"ribosomal RNA assembly protein mis3, putative, expressed"	Medtr5g094630.2	"KH, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12263.1.A1_s_at	A	A1TS	POPTR_0001s26580	POPTR_0001s26580 (11)	scaffold_1:25561742-25562279(-) (11)	NA	Q41364	"2-oxoglutarate/malate translocator, chloroplastic"	AT5G12860.1	dicarboxylate transporter 1 	LOC_Os12g33080.1	"2-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed"	Medtr2g009260.1	Sodium/sulphate symporter 	GO:0006814|sodium ion transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.12263.2.S1_at	A	A1TS	POPTR_0009s05840	POPTR_0009s05840 (11)	scaffold_9:5822107-5822604(-) (11)	NA	Q41364	"2-oxoglutarate/malate translocator, chloroplastic"	AT5G12860.1	dicarboxylate transporter 1 	LOC_Os12g33080.1	"2-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed"	Medtr2g009260.1	Sodium/sulphate symporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122658.1.S1_at	A	A1TS	POPTR_0005s26370	POPTR_0005s26370 (11)	scaffold_5:24424742-24425254(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g039730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122672.1.S1_s_at	A	A1TS	POPTR_0005s21360	POPTR_0005s21360 (11)	scaffold_5:20462465-20463321(+) (11)	NA	P46276	"Fructose-1,6-bisphosphatase, cytosolic"	AT1G43670.1	Inositol monophosphatase family protein 	LOC_Os01g64660.2	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.12269.1.A1_at	A	A3TS	POPTR_0014s15110	POPTR_0014s15110 (11)//POPTR_0014s15080 (9)//POPTR_0014s15050 (9)	scaffold_14:11148466-11149208(-) (9)//scaffold_14:11173125-11173865(-) (9)//scaffold_14:11220662-11222010(-) (11)	NA	Q8H1Z0	Protein WAX2	AT1G02205.2	Fatty acid hydroxylase superfamily 	LOC_Os10g33250.1	"WAX2, putative, expressed"	Medtr8g009340.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.122722.1.S1_at	A	A1TS	POPTR_0004s06430	POPTR_0004s06430 (11)	scaffold_4:5171976-5172574(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122745.1.S1_s_at	A	A1TS	POPTR_0016s02320	POPTR_0016s02320 (11)	scaffold_16:1130040-1130394(-) (11)	NA	NA	NA	AT5G60580.3	RING/U-box superfamily protein 	LOC_Os06g46366.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr4g081620.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122746.1.S1_s_at	A	A1TS	POPTR_0017s10720	POPTR_0017s10720 (11)	scaffold_17:10226335-10226955(-) (11)	NA	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12275.1.A1_a_at	A	A1TS	POPTR_0010s03120	POPTR_0010s03120 (11)	scaffold_10:3765869-3766114(-) (11)	NA	Q12296	Protein MAM3	AT4G14240.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os05g32850.1	"CBS domain containing protein, expressed"	Medtr7g010120.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12275.1.A1_at	A	A1TS	POPTR_0010s03120	POPTR_0010s03120 (11)	scaffold_10:3765722-3766621(-) (11)	NA	Q12296	Protein MAM3	AT4G14240.1	CBS domain-containing protein with a domain of unknown function (DUF21) 	LOC_Os05g32850.1	"CBS domain containing protein, expressed"	Medtr7g010120.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122754.1.S1_at	A	A1TS	POPTR_0004s10380	POPTR_0004s10380 (11)	scaffold_4:8914500-8917729(-) (11)	POPTR_0017s14030 (6)	Q9HGL3	Protein sum2	AT1G26110.2	decapping 5 	LOC_Os06g30060.2	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122766.1.S1_at	A	A1MS	POPTR_0013s04620	POPTR_0013s04620 (9)	scaffold_13:3179901-3181220(+) (9)	NA	P72991	ATP-dependent zinc metalloprotease FtsH 3	AT3G04340.1	FtsH extracellular protease family 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr1g094060.1	Peptidase M41; Caspase Recruitment; AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.122769.1.S1_at	A	A1TS	POPTR_0017s08010	POPTR_0017s08010 (11)	scaffold_17:6421850-6421896(+) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr4g120610.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.122769.1.S1_s_at	A	A1TS	POPTR_0017s08010	POPTR_0017s08010 (11)	scaffold_17:6421920-6422489(+) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr4g120610.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.122778.1.S1_s_at	A	A1TS	POPTR_0003s15770	POPTR_0003s15770 (11)	scaffold_3:15480301-15480750(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122780.1.S1_at	A	A1TS	POPTR_0004s12240	POPTR_0004s12240 (10)	scaffold_4:11305190-11305649(+) (10)	NA	P53536	"Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic"	AT3G29320.1	"Glycosyl transferase, family 35 "	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr6g014750.1	"Glycosyl transferase, family 35 "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
PtpAffx.12284.1.A1_s_at	A	A1TS	POPTR_0008s05160	POPTR_0008s05160 (11)	scaffold_8:2996169-2996903(-) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.12284.2.S1_a_at	A	A1TS	POPTR_0001s17720	POPTR_0001s17720 (11)	scaffold_1:14567168-14567208(-) (11)	NA	O67781	Aspartate aminotransferase	AT1G80360.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g08270.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g140320.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.12284.2.S1_at	A	A1TS	POPTR_0001s17720	POPTR_0001s17720 (11)	scaffold_1:14567130-14567326(-) (11)	NA	O67781	Aspartate aminotransferase	AT1G80360.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g08270.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g140320.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.122841.1.S1_s_at	A	A1TS	POPTR_0006s00580	POPTR_0006s00580 (11)	scaffold_6:305122-306377(-) (11)	NA	NA	NA	AT5G47740.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os06g18820.1	"serine threonine kinase, putative, expressed"	AC233669_2.1	hypothetical protein AC233669.2 8999-10267 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122847.1.S1_at	A	A1TS	POPTR_0011s15810	POPTR_0011s15810 (10)	scaffold_11:17873555-17875990(+) (10)	NA	NA	NA	AT4G20380.7	LSD1 zinc finger family protein 	LOC_Os03g43840.1	"LSD1 zinc finger domain containing protein, expressed"	Medtr4g137880.1	"Zinc finger, LSD1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122853.1.S1_at	A	A1TS	POPTR_0009s02560	POPTR_0009s02560 (11)	scaffold_9:3344277-3344921(-) (11)	NA	Q94EJ2	Histone deacetylase 8	AT1G08460.1	histone deacetylase 8 	LOC_Os05g36920.1	"histone deacetylase, putative, expressed"	Medtr2g105140.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12287.1.S1_s_at	A	A2TS	POPTR_0013s11100	POPTR_0013s11100 (11)//POPTR_0013s11110 (11)	scaffold_13:11785451-11785893(-) (11)//scaffold_13:11798162-11798604(-) (11)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65100.1	"peptide transporter, putative, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.122897.1.A1_at	A	A1TS	POPTR_0006s24600	POPTR_0006s24600 (11)	scaffold_6:23203452-23203965(+) (11)	NA	Q9H0R3	Transmembrane protein 222	AT2G26070.1	Protein of unknown function (DUF778) 	LOC_Os01g51430.1	"green ripe-like, putative, expressed"	Medtr1g020540.1	Protein of unknown function DUF778 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1229.1.S1_s_at	A	A1TS	POPTR_0014s09410	POPTR_0014s09410 (11)	scaffold_14:7004739-7005690(+) (11)	NA	O15818	Protein KIAA0664 homolog	AT1G01320.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g23990.1	"tetratricopeptide repeat domain containing protein, putative, expressed"	AC235758_23.1	Tetratricopeptide-like helical; AC235758.1 151415-160426 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12291.1.A1_s_at	A	A1TS	POPTR_0009s07610	POPTR_0009s07610 (11)	scaffold_9:7082473-7082556(+) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G19420.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os05g31920.2	"FYVE zinc finger domain containing protein, expressed"	Medtr5g096940.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122932.1.S1_at	A	A1TS	POPTR_0014s02120	POPTR_0014s02120 (11)	scaffold_14:1841413-1841920(+) (11)	NA	Q3ECW2	Cyclin-A3-4	AT1G47230.1	CYCLIN A3;4 	LOC_Os03g41100.1	"cyclin, putative, expressed"	Medtr1g023700.1	Cyclin-like; ; 	NA	NA	GO:0005634|nucleus
PtpAffx.122937.1.A1_s_at	A	A1TS	POPTR_0014s17230	POPTR_0014s17230 (11)	scaffold_14:13366909-13367364(-) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.122940.1.S1_at	A	A1TS	POPTR_0012s04670	POPTR_0012s04670 (11)	scaffold_12:4019902-4020077(+) (11)	NA	Q9LV33	Beta-glucosidase 44	AT3G18080.1	B-S glucosidase 44 	LOC_Os01g32364.1	"Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.122940.1.S1_s_at	A	A1TS	POPTR_0012s04670	POPTR_0012s04670 (11)	scaffold_12:4020430-4020505(+) (11)	NA	Q9LV33	Beta-glucosidase 44	AT3G18080.1	B-S glucosidase 44 	LOC_Os01g32364.1	"Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.122949.1.S1_at	A	A1TS	POPTR_0005s03710	POPTR_0005s03710 (11)	scaffold_5:2482904-2483388(-) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT1G54860.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122960.1.A1_at	A	A1TS	POPTR_0009s04660	POPTR_0009s04660 (9)	scaffold_9:4946886-4947356(-) (9)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT5G58940.1	calmodulin-binding receptor-like cytoplasmic kinase 1 	LOC_Os01g63280.2	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g078150.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.122962.1.A1_at	A	A1TS	POPTR_0018s00690	POPTR_0018s00690 (9)	scaffold_18:599032-599389(+) (9)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os10g35240.2	"Rf1, mitochondrial precursor, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122975.1.A1_at	A	A1TS	POPTR_0004s05040	POPTR_0004s05040 (10)	scaffold_4:3795251-3796436(+) (10)	NA	NA	NA	AT1G28530.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 20 Blast hits to 20 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g01970.1	expressed protein	Medtr2g018350.1	"F3M18.3, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122982.1.A1_at	A	A1TS	POPTR_0012s11340	POPTR_0012s11340 (11)	scaffold_12:11814356-11814602(-) (11)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G51060.1	NADPH/respiratory burst oxidase protein D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.122982.1.A1_s_at	A	A2TS	POPTR_0015s12130	POPTR_0015s12130 (11)//POPTR_0012s11340 (10)	scaffold_12:11814628-11815253(-) (10)//scaffold_15:12523780-12524552(-) (11)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G51060.1	NADPH/respiratory burst oxidase protein D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
PtpAffx.122999.2.S1_a_at	A	A1TS	POPTR_0018s08850	POPTR_0018s08850 (11)	scaffold_18:9776335-9776477(+) (11)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122999.3.S1_a_at	A	A1TS	POPTR_0018s08850	POPTR_0018s08850 (11)	scaffold_18:9777910-9778607(+) (11)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.122999.3.S1_at	A	A1TS	POPTR_0018s08850	POPTR_0018s08850 (11)	scaffold_18:9777923-9778796(+) (11)	NA	Q8H0W1	Chloroplast processing peptidase	AT3G24590.1	plastidic type i signal peptidase 1 	LOC_Os02g16709.1	"peptidase, putative, expressed"	Medtr4g159190.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123000.1.S1_at	A	A1TS	POPTR_0002s09190	POPTR_0002s09190 (9)	scaffold_2:6508648-6509135(-) (9)	NA	Q80Y20	Alkylated DNA repair protein alkB homolog 8	AT1G36310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51490.1	"methyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.123000.2.S1_a_at	A	A1TS	POPTR_0002s09190	POPTR_0002s09190 (11)	scaffold_2:6509818-6509854(-) (11)//scaffold_2:6510010-6510046(-) (11)	NA	Q80Y20	Alkylated DNA repair protein alkB homolog 8	AT1G36310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51490.1	"methyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.123000.2.S1_at	A	A1TS	POPTR_0002s09190	POPTR_0002s09190 (10)	scaffold_2:6509842-6510314(-) (10)	NA	Q80Y20	Alkylated DNA repair protein alkB homolog 8	AT1G36310.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51490.1	"methyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.12303.1.S1_at	A	A1TS	POPTR_0004s22160	POPTR_0004s22160 (11)	scaffold_4:21101118-21101768(+) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT2G28315.1	Nucleotide/sugar transporter family protein 	LOC_Os02g41780.1	"transporter-related, putative, expressed"	Medtr2g110080.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12304.1.A1_at	A	A1TS	POPTR_0016s00210	POPTR_0016s00210 (11)	scaffold_16:17989-18836(+) (11)	NA	Q8RWU6	Sodium/hydrogen exchanger 6	AT1G79610.1	Na+/H+ antiporter 6 	LOC_Os09g11450.2	"transporter, monovalent cation:proton antiporter-2 family, putative, expressed"	Medtr2g033740.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.12306.1.S1_a_at	A	A1TS	POPTR_0007s02080	POPTR_0007s02080 (11)	scaffold_7:1224020-1224110(+) (11)	NA	Q8L9G7	Gamma-secretase subunit APH1-like	AT2G31440.1	"INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). "	LOC_Os02g17280.1	"gamma-secretase subunit APH-1B, putative, expressed"	NA	NA	GO:0043085|positive regulation of catalytic activity||GO:0016485|protein processing	GO:0005515|protein binding	GO:0016021|integral to membrane
PtpAffx.12306.2.S1_a_at	A	A1TS	POPTR_0007s02080	POPTR_0007s02080 (11)	scaffold_7:1221101-1222455(+) (11)	NA	Q8L9G7	Gamma-secretase subunit APH1-like	AT2G31440.1	"INVOLVED IN: positive regulation of catalytic activity, protein processing; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aph-1 (InterPro:IPR009294); Has 268 Blast hits to 262 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 212; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). "	LOC_Os02g17280.1	"gamma-secretase subunit APH-1B, putative, expressed"	NA	NA	GO:0043085|positive regulation of catalytic activity||GO:0016485|protein processing	GO:0005515|protein binding	GO:0016021|integral to membrane
PtpAffx.12309.1.A1_a_at	A	A1TS	POPTR_0010s25930	POPTR_0010s25930 (11)	scaffold_10:21361397-21361914(+) (11)	NA	NA	NA	AT1G16840.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g13320.1	expressed protein	Medtr2g042680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12309.2.S1_at	A	A1TS	POPTR_0008s00650	POPTR_0008s00650 (11)	scaffold_8:292253-293600(-) (11)	NA	NA	NA	AT1G16840.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g51770.1	expressed protein	Medtr2g042680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12309.3.S1_at	A	A1TS	POPTR_0010s25930	POPTR_0010s25930 (11)	scaffold_10:21361561-21362045(+) (11)	NA	NA	NA	AT1G16840.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 71 Blast hits to 71 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g13320.1	expressed protein	Medtr2g042680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123094.1.A1_at	A	A1TA	POPTR_0001s10740	POPTR_0001s10740 (11)	scaffold_1:8355074-8355469(+) (11)	NA	Q9C671	Probable phosphatidylinositol 4-kinase type 2-beta At1g26270	AT2G46500.2	phosphoinositide 4-kinase gamma 4 	LOC_Os05g51230.1	"phosphatidylinositol 3- and 4-kinase family protein, putative, expressed"	Medtr5g009140.1	"Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.123109.1.S1_at	A	A1TS	POPTR_0018s11960	POPTR_0018s11960 (10)	scaffold_18:12591339-12591851(-) (10)	NA	Q9FGT7	Two-component response regulator ARR18	AT2G25180.1	response regulator 12 	LOC_Os02g55320.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.123129.1.A1_s_at	A	A1TS	POPTR_0009s13510	POPTR_0009s13510 (11)	scaffold_9:10735168-10736202(+) (11)	NA	P28493	Pathogenesis-related protein 5	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os08g43510.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123132.1.A1_at	A	A1TS	POPTR_0001s23690	POPTR_0001s23690 (11)	scaffold_1:23084405-23084844(-) (11)	NA	NA	NA	AT2G32840.1	proline-rich family protein 	LOC_Os03g13190.1	"transposon protein, putative, unclassified, expressed"	Medtr2g071560.1	"proline-rich family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123144.1.A1_at	A	A1TS	POPTR_0006s09100	POPTR_0006s09100 (11)	scaffold_6:6711030-6712951(-) (11)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT1G06150.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os12g06330.1	"CPuORF6 - conserved peptide uORF-containing transcript, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123147.1.A1_at	A	A1TS	POPTR_0018s11180	POPTR_0018s11180 (11)	scaffold_18:11975754-11976242(+) (11)	NA	NA	NA	AT4G30780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12315.1.A1_at	A	A1TS	POPTR_0013s12810	POPTR_0013s12810 (10)	scaffold_13:13471315-13471734(+) (10)	NA	Q6S4P4	Transcription factor RF2b	AT3G58120.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os01g55150.1	"bZIP transcription factor domain containing protein, expressed"	AC233675_20.1	Basic leucine zipper AC233675.1 92514-95337 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.123151.1.A1_at	A	A1TS	POPTR_0006s13160	POPTR_0006s13160 (11)	scaffold_6:10380940-10381116(+) (11)	NA	P0CH05	Polyubiquitin	AT5G20620.1	ubiquitin 4 	LOC_Os05g42424.1	"ubiquitin family protein, putative, expressed"	Medtr4g110760.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123174.1.A1_at	A	A1MS	POPTR_0013s03860	POPTR_0013s03860 (11)	scaffold_13:2517171-2517482(-) (11)	NA	P32294	Auxin-induced protein 22B	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os12g40900.1	"OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed"	AC233668_17.1	AUX/IAA protein AC233668.2 65033-67329 F EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.123193.1.S1_s_at	A	A1TS	POPTR_0018s04830	POPTR_0018s04830 (11)	scaffold_18:4205018-4206588(+) (11)	NA	Q9M077	Serine/threonine-protein kinase Aurora-1	AT4G32830.1	ataurora1 	LOC_Os01g09580.2	"CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g128170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1232.1.A1_at	A	A1TS	POPTR_0005s20540	POPTR_0005s20540 (11)	scaffold_5:19598416-19598859(+) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT1G77280.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os12g07990.1	"protein kinase family protein, putative"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.123201.1.S1_s_at	A	A1TS	POPTR_0001s45010	POPTR_0001s45010 (11)	scaffold_1:45326224-45327243(-) (11)	NA	Q9FFT9	DEAD-box ATP-dependent RNA helicase 32	AT5G54910.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os07g33340.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr5g099850.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.123212.1.S1_at	A	A1TS	POPTR_0002s18030	POPTR_0002s18030 (9)	scaffold_2:13914412-13914758(-) (9)	NA	Q8L838	Conserved oligomeric Golgi complex subunit 4	AT4G01400.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167); Has 465 Blast hits to 425 proteins in 199 species: Archae - 0; Bacteria - 3; Metazoa - 153; Fungi - 166; Plants - 45; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink). 	LOC_Os02g25840.1	"conserved oligomeric Golgi complex component 4, related, putative, expressed"	Medtr7g146090.1	COG4 transport 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123216.1.S1_at	A	A1TS	POPTR_0007s12550	POPTR_0007s12550 (11)	scaffold_7:12847228-12848095(+) (11)	NA	Q9ZR40	Splicing factor U2af large subunit B	AT4G36690.4	"U2 snRNP auxilliary factor, large subunit, splicing factor "	LOC_Os11g45590.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g013160.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.12324.2.S1_at	A	A1TS	POPTR_0007s05410	POPTR_0007s05410 (11)	scaffold_7:3494480-3495308(-) (11)	NA	Q8GSA7	Calmodulin-binding transcription activator 3	AT2G22300.2	signal responsive 1 	LOC_Os03g09100.1	"calmodulin-binding transcription activator, putative, expressed"	Medtr2g008890.1	IQ calmodulin-binding region; CG-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123245.1.S1_at	A	A1TS	POPTR_0014s02590	POPTR_0014s02590 (11)	scaffold_14:2160041-2160300(+) (11)	NA	Q9FUA4	Transcription factor SPATULA	AT4G36930.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os06g06900.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g024210.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.123247.1.S1_at	A	A1TS	POPTR_0019s05980	POPTR_0019s05980 (11)	scaffold_19:6418738-6419604(+) (11)	NA	NA	NA	AT1G09815.1	polymerase delta 4 	LOC_Os09g34850.3	"POLD4A - Putative DNA polymerase delta complex subunit, expressed"	AC235662_16.1	"DNA polymerase delta, subunit 4 AC235662.1 72274-71456 F EGN_Mt090430 200"	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	NA	GO:0005634|nucleus
PtpAffx.123262.1.S1_s_at	A	A1TS	POPTR_0014s02200	POPTR_0014s02200 (11)	scaffold_14:1879211-1879380(+) (11)	NA	Q9M7N6	MFP1 attachment factor 1	AT1G47200.1	WPP domain protein 2 	LOC_Os03g11060.1	"MFP1 attachment factor 1, putative, expressed"	Medtr1g023740.1	"MFP1 attachment factor 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123280.1.S1_s_at	A	A1TS	POPTR_0001s24370	POPTR_0001s24370 (11)	scaffold_1:23669471-23670093(-) (11)	NA	NA	NA	AT2G39570.1	ACT domain-containing protein 	LOC_Os05g02220.3	"ACT domain containing protein, expressed"	Medtr2g114630.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.123284.1.S1_at	A	A1MS	POPTR_0005s15440	POPTR_0005s15440 (9)	scaffold_5:12114054-12115940(+) (9)	NA	NA	NA	AT5G16160.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g49490.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12329.1.A1_at	A	A1TS	POPTR_0005s07760	POPTR_0005s07760 (10)	scaffold_5:5311438-5311983(-) (10)	NA	NA	NA	AT5G65030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr3g101660.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12330.1.A1_at	A	A1MS	POPTR_0014s08060	POPTR_0014s08060 (10)	scaffold_14:5999394-5999876(+) (10)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g40100.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.123326.1.S1_at	A	A1TS	POPTR_0005s19650	POPTR_0005s19650 (11)	scaffold_5:18564037-18564586(-) (11)	NA	NA	NA	AT1G09700.1	dsRNA-binding domain-like superfamily protein 	LOC_Os11g01869.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g149610.1	Double-stranded RNA binding 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.123349.1.S1_s_at	A	A2TS	POPTR_0013s07650	POPTR_0019s07200 (11)//POPTR_0013s07650 (11)	scaffold_13:6488693-6488884(+) (11)//scaffold_19:8053957-8054148(-) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT5G16730.1	Plant protein of unknown function (DUF827) 	LOC_Os05g02820.1	"protein transport protein-related, putative, expressed"	Medtr4g107430.1	"protein transport protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123365.1.S1_s_at	A	A1TS	POPTR_0021s00290	POPTR_0021s00290 (11)	scaffold_21:85684-86436(+) (11)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
PtpAffx.123366.1.S1_at	A	A1TS	POPTR_0008s11040	POPTR_0008s11040 (9)	scaffold_8:6959803-6960330(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123370.1.S1_s_at	A	A1TS	POPTR_0008s04680	POPTR_0008s04680 (11)	scaffold_8:2681813-2682674(+) (11)	NA	Q86X76	Nitrilase homolog 1	AT4G08790.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein 	LOC_Os12g31830.1	"nitrilase, putative, expressed"	Medtr1g146400.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.12338.1.S1_at	A	A1TS	POPTR_0003s20390	POPTR_0003s20390 (11)	scaffold_3:18894721-18895784(+) (11)	NA	Q9C5J8	"Outer envelope protein of 80 kDa, chloroplastic"	AT5G19620.1	outer envelope protein of 80 kDa 	LOC_Os02g10260.1	"outer membrane protein, OMP85 family protein, expressed"	Medtr2g117630.1	Bacterial surface antigen (D15) 	NA	NA	GO:0019867|outer membrane
PtpAffx.123395.1.S1_at	A	A1TS	POPTR_0019s01610	POPTR_0019s01610 (9)	scaffold_19:1429664-1430084(+) (10)	NA	NA	NA	AT5G53590.1	SAUR-like auxin-responsive protein family  	LOC_Os02g52990.1	"OsSAUR12 - Auxin-responsive SAUR gene family member, expressed"	Medtr4g144190.1	"auxin-induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123412.1.S1_s_at	A	A1TS	POPTR_0004s00210	POPTR_0004s00210 (11)	scaffold_4:16040-16381(-) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT5G16370.1	acyl activating enzyme 5 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084090.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.12342.1.A1_at	A	A1TS	POPTR_0006s04180	POPTR_0006s04180 (11)	scaffold_6:2834318-2834964(-) (11)	NA	NA	NA	AT5G04080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12342.1.A1_x_at	A	A1TS	POPTR_0006s04180	POPTR_0006s04180 (11)	scaffold_6:2834318-2835131(-) (11)	NA	NA	NA	AT5G04080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12342.2.S1_s_at	A	A1TS	POPTR_0003s12870	POPTR_0003s12870 (11)	scaffold_3:13320018-13320076(+) (11)	NA	Q7XSQ9	Probable aquaporin PIP1-2	AT4G00430.1	plasma membrane intrinsic protein 1;4 	LOC_Os02g44630.2	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.12342.4.A1_at	A	A1MS	POPTR_0006s04180	POPTR_0006s04180 (11)	scaffold_6:2834784-2835122(-) (11)	NA	NA	NA	AT5G04080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; Has 115 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123425.1.A1_at	A	A1TS	POPTR_0012s10740	POPTR_0012s10740 (10)	scaffold_12:11437817-11438227(-) (10)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g61740.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr6g025640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.12345.1.S1_at	A	A1TS	POPTR_0019s08020	POPTR_0019s08020 (10)	scaffold_19:9345037-9345523(-) (10)	NA	NA	NA	AT1G65295.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01015.1); Has 90 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g27540.2	"CRP7 - Cysteine-rich family protein precursor, expressed"	Medtr7g089520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123468.1.S1_at	A	A1TS	POPTR_0008s06210	POPTR_0008s06210 (11)	scaffold_8:3659716-3659751(-) (11)	NA	NA	NA	AT5G05960.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g33920.1	"LTPL102 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12348.1.S1_at	A	A1TS	POPTR_0007s05690	POPTR_0007s05690 (11)	scaffold_7:3822498-3823048(-) (11)	NA	Q8H1E4	Ethylene-responsive transcription factor RAP2-4	AT1G78080.1	related to AP2 4 	LOC_Os02g51670.1	"ethylene-responsive transcription factor, putative, expressed"	CU651566_18.1	Pathogenesis-related transcriptional factor and ERF CU651566.9 95071-96871 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.1235.1.A1_at	A	A2TS	POPTR_0004s18780	POPTR_0004s18780 (11)//POPTR_0014s18075 (9)	scaffold_14:14636372-14636725(-) (11)//scaffold_14:14695688-14696016(-) (10)//scaffold_4:18524210-18530424(-) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os04g47420.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr5g023220.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123510.1.S1_at	A	A1TS	POPTR_0014s02930	POPTR_0014s02930 (11)	scaffold_14:2418540-2418578(+) (11)	NA	P97852	Peroxisomal multifunctional enzyme type 2	AT5G42890.1	sterol carrier protein 2 	LOC_Os02g52720.1	"peroxisomal multifunctional enzyme type 2, putative"	Medtr1g024360.1	Short-chain dehydrogenase/reductase SDR; Sterol-binding 	NA	NA	NA
PtpAffx.123510.1.S1_s_at	A	A1TS	POPTR_0014s02930	POPTR_0014s02930 (11)	scaffold_11:3461276-3461429(+) (11)//scaffold_14:2418357-2418511(+) (11)	NA	P97852	Peroxisomal multifunctional enzyme type 2	AT5G42890.1	sterol carrier protein 2 	LOC_Os02g52720.1	"peroxisomal multifunctional enzyme type 2, putative"	Medtr1g024360.1	Short-chain dehydrogenase/reductase SDR; Sterol-binding 	NA	NA	NA
PtpAffx.12353.1.A1_at	A	A1MA	POPTR_0018s14280	POPTR_0018s14280 (11)	scaffold_18:14513314-14513696(+) (11)	NA	Q9CZU3	Superkiller viralicidic activity 2-like 2	AT2G06990.1	"RNA helicase, ATP-dependent, SK12/DOB1 protein "	LOC_Os11g07500.1	"DSHCT domain containing protein, expressed"	Medtr4g161100.1	"ATP-requiring DNA helicase RecQ; DSH, C-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.123534.1.S1_s_at	A	A1TS	POPTR_0011s13460	POPTR_0011s13460 (11)	scaffold_11:16195819-16196260(-) (11)	NA	Q69VG1	Chitin-inducible gibberellin-responsive protein 1	AT1G50600.1	scarecrow-like 5 	LOC_Os07g36170.2	"chitin-inducible gibberellin-responsive protein, putative, expressed"	Medtr2g096350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123565.1.S1_at	A	A1TS	POPTR_0005s16700	POPTR_0005s16700 (9)	scaffold_5:13745926-13747243(-) (9)	NA	Q66KH2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT1G36050.2	Endoplasmic reticulum vesicle transporter protein 	LOC_Os04g38340.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12358.1.S1_at	A	A1TS	POPTR_0002s06200	POPTR_0002s06200 (11)	scaffold_2:4153416-4154426(-) (11)	NA	Q8HXM1	Cleavage stimulation factor subunit 2	AT1G71800.1	cleavage stimulating factor 64 	LOC_Os11g07490.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g158160.1	"proline-rich protein precursor, putative "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.123605.1.S1_at	A	A1TS	POPTR_0004s20530	POPTR_0004s20530 (9)	scaffold_4:20046932-20050020(+) (9)	NA	Q6P8B3	Speckle-type POZ protein	AT3G03740.1	BTB-POZ and MATH domain 4 	LOC_Os03g57854.1	"MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed"	Medtr5g094610.1	BTB/POZ; MATH; ; ; 	NA	GO:0005515|protein binding	NA
PtpAffx.123631.1.S1_s_at	A	A1TS	POPTR_0012s07290	POPTR_0012s07290 (11)	scaffold_12:8150628-8151170(-) (11)	NA	C0LGF4	LRR receptor-like serine/threonine-protein kinase FEI 1	AT5G62710.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g44090.1	"leucine-rich repeat family protein, putative, expressed"	Medtr8g113060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.12369.1.A1_at	A	A2TS	POPTR_0008s16760	POPTR_0008s16770 (11)//POPTR_0008s16760 (11)	scaffold_8:11289276-11289377(+) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G14350.3	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1237.1.A1_s_at	A	A1TS	POPTR_0001s34380	POPTR_0001s34380 (11)	scaffold_1:32526312-32527139(-) (11)	NA	A5GI62	Ribosome maturation factor rimM	AT5G46420.1	16S rRNA processing protein RimM family 	LOC_Os05g49130.2	"16S rRNA processing protein RimM containing protein, expressed"	Medtr4g136560.1	UTP--glucose-1-phosphate uridylyltransferase; 16S rRNA processing protein RimM 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	NA
PtpAffx.123703.1.S1_at	A	A1TS	POPTR_0006s10110	POPTR_0006s10110 (10)	scaffold_6:7519657-7520248(-) (10)	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g166250.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.12372.1.A1_at	A	A1TS	POPTR_0016s13950	POPTR_0016s13950 (11)	scaffold_16:13171237-13171660(-) (11)	NA	Q8K4Q0	Regulatory-associated protein of mTOR	AT3G08850.1	"HEAT repeat ;WD domain, G-beta repeat protein protein "	LOC_Os12g01922.1	"WD domain and HEAT domain containing protein, putative, expressed"	Medtr7g077750.1	WD40-like; Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123754.2.A1_at	A	A1TS	POPTR_0012s09710	POPTR_0012s09710 (11)	scaffold_12:10666408-10667505(+) (11)	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
PtpAffx.12377.1.A1_at	A	A1TS	POPTR_0003s07240	POPTR_0003s07240 (10)	scaffold_3:8826690-8826950(-) (10)	NA	B3EER1	50S ribosomal protein L7/L12	AT1G70190.2	"Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like "	LOC_Os05g48050.1	"ribosomal protein L7/L12 C-terminal domain containing protein, expressed"	Medtr8g092690.1	"Ribosomal protein L7/12, oligomerisation; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.123796.2.A1_at	A	A1MS	POPTR_0015s11700	POPTR_0015s11700 (9)	scaffold_15:12262262-12262737(+) (11)	NA	Q55467	Magnesium-protoporphyrin O-methyltransferase	AT4G25080.5	magnesium-protoporphyrin IX methyltransferase 	LOC_Os06g04150.1	"magnesium-protoporphyrin O-methyltransferase, putative, expressed"	Medtr4g152280.1	Magnesium protoporphyrin O-methyltransferase 	GO:0015979|photosynthesis||GO:0015995|chlorophyll biosynthetic process	GO:0046406|magnesium protoporphyrin IX methyltransferase activity	NA
PtpAffx.12381.1.S1_at	A	A1TS	POPTR_0013s00250	POPTR_0013s00250 (11)	scaffold_13:41733-42333(+) (11)	NA	Q09758	Putative membrane-bound O-acyltransferase C24H6.01c	AT1G57600.1	MBOAT (membrane bound O-acyl transferase) family protein 	LOC_Os05g05200.1	"O-acyltransferase, putative, expressed"	Medtr1g140740.1	"Membrane bound O-acyl transferase, MBOAT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123814.1.A1_at	A	A1TS	POPTR_0017s01660	POPTR_0017s01660 (11)	scaffold_17:1184246-1184699(-) (11)	NA	Q9FLW0	Probable receptor-like protein kinase At5g24010	AT5G24010.1	Protein kinase superfamily protein 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g092200.1	Tyrosine protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.123838.1.A1_at	A	A1MS	POPTR_0001s15110	POPTR_0001s15110 (10)	scaffold_1:11951148-11951572(+) (10)	NA	Q13395	Probable methyltransferase TARBP1	AT4G17610.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os03g01110.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.12384.1.A1_at	A	A1TS	POPTR_0007s07320	POPTR_0007s07320 (11)	scaffold_7:5662875-5663331(-) (11)	NA	P54697	Myosin-J heavy chain	AT3G19960.1	myosin 1 	LOC_Os10g34710.1	"myosin-2 heavy chain, non muscle, putative, expressed"	Medtr1g046530.1	"IQ calmodulin-binding region; Myosin head, motor region "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.12384.2.S1_a_at	A	A2TS	POPTR_0005s09150	POPTR_0007s07320 (10)//POPTR_0005s09150 (10)	scaffold_5:6396508-6396541(-) (10)//scaffold_7:5663463-5663496(-) (10)	NA	P54697	Myosin-J heavy chain	AT3G19960.1	myosin 1 	LOC_Os10g34710.1	"myosin-2 heavy chain, non muscle, putative, expressed"	Medtr1g046530.1	"IQ calmodulin-binding region; Myosin head, motor region "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.12384.2.S1_at	A	A1TS	POPTR_0005s09150	POPTR_0005s09150 (11)	scaffold_5:6396428-6396712(-) (11)	NA	P54697	Myosin-J heavy chain	AT3G19960.1	myosin 1 	LOC_Os10g34710.1	"myosin-2 heavy chain, non muscle, putative, expressed"	Medtr1g046530.1	"IQ calmodulin-binding region; Myosin head, motor region "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.123845.1.S1_s_at	A	A2TS	POPTR_0010s02610	POPTR_0010s02610 (11)//POPTR_0026s00260 (11)	scaffold_10:3021129-3021243(+) (11)//scaffold_26:335015-335129(+) (11)	NA	Q9LZJ3	Xyloglucan 6-xylosyltransferase	AT3G62720.2	xylosyltransferase 1 	LOC_Os03g18820.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
PtpAffx.12388.1.S1_at	A	A1TS	POPTR_0011s09370	POPTR_0011s09370 (11)	scaffold_11:11609324-11609760(-) (11)	NA	Q42093	ABC transporter C family member 2	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.12388.2.A1_a_at	A	A1TS	POPTR_0011s09370	POPTR_0011s09370 (11)	scaffold_11:11609826-11610451(-) (11)	NA	Q42093	ABC transporter C family member 2	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.12389.1.A1_x_at	A	A1TS	POPTR_0014s15770	POPTR_0014s15770 (11)	scaffold_14:11838484-11838761(+) (11)	NA	Q94AD9	Zinc finger CCCH domain-containing protein 3	AT1G04990.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g092550.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.12395.1.S1_at	A	A1TS	POPTR_0016s02330	POPTR_0016s02330 (10)	scaffold_16:1149358-1149858(+) (10)	NA	Q8CCB4	Vacuolar protein sorting-associated protein 53 homolog	AT1G50500.1	Membrane trafficking VPS53 family protein 	LOC_Os01g67880.1	"vacuolar protein sorting-associated protein 53, putative, expressed"	Medtr2g033780.1	"Vps53-like, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.123984.1.S1_at	A	A1TA	POPTR_0016s05670	POPTR_0016s05670 (9)	scaffold_16:3602905-3603397(-) (9)	NA	Q8GWK2	AP2-like ethylene-responsive transcription factor At2g41710	AT2G41710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g32270.1	"AP2 domain containing protein, expressed"	Medtr8g144720.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.123989.1.S1_at	A	A1TS	POPTR_0006s12040	POPTR_0006s12040 (9)	scaffold_6:9209455-9209938(-) (9)	POPTR_0016s10950 (6)	Q9DE27	RuvB-like 2	AT5G67630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g08770.1	"ruvB-like 2, putative, expressed"	Medtr3g080810.1	"AAA ATPase; TIP49, C-terminal "	NA	GO:0003678|DNA helicase activity||GO:0005524|ATP binding	NA
PtpAffx.124024.1.S1_s_at	A	A1TS	POPTR_0012s09990	POPTR_0012s09990 (11)	scaffold_12:10877767-10878217(+) (11)	NA	NA	NA	AT3G48550.1	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g30380.1	expressed protein	Medtr8g108940.1	"ATIDD15/SGR5 ; nucleic acid binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12403.1.S1_at	A	A1TS	POPTR_0002s11410	POPTR_0002s11410 (10)	scaffold_2:8448312-8448805(-) (10)	NA	P46604	Homeobox-leucine zipper protein HAT22	AT4G37790.1	Homeobox-leucine zipper protein family 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g015030.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.124032.1.A1_at	A	A1TS	POPTR_0005s26160	POPTR_0005s26160 (11)	scaffold_5:24237282-24237958(-) (11)	NA	Q8GUG9	U-box domain-containing protein 11	AT3G06880.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g30010.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g112060.1	U box; Armadillo-like helical; 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.124035.1.S1_s_at	A	A1TS	POPTR_0008s09550	POPTR_0008s09550 (11)	scaffold_8:5909621-5909978(+) (11)	POPTR_0010s16590 (7)	Q9LMX4	Probable inactive purple acid phosphatase 1	AT1G13750.1	Purple acid phosphatases superfamily protein 	LOC_Os12g38760.2	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g073720.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.12404.1.A1_at	A	A1MS	POPTR_0008s17000	POPTR_0008s17000 (9)	scaffold_8:11433340-11433540(+) (9)	NA	Q9FNL7	Peptide transporter PTR3-A	AT5G46050.1	peptide transporter 3 	LOC_Os10g33210.1	"peptide transporter PTR3-A, putative, expressed"	Medtr1g090040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.124056.1.S1_a_at	A	A1TS	POPTR_0006s12820	POPTR_0006s12820 (11)	scaffold_6:9982718-9982843(+) (11)	NA	NA	NA	AT2G37025.2	TRF-like 8 	LOC_Os02g53670.1	"MYB family transcription factor, putative, expressed"	Medtr1g076560.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124056.1.S1_at	A	A1TS	POPTR_0006s12820	POPTR_0006s12820 (11)	scaffold_6:9983598-9984973(+) (11)	NA	NA	NA	AT2G37025.2	TRF-like 8 	LOC_Os02g53670.1	"MYB family transcription factor, putative, expressed"	Medtr1g076560.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124056.2.S1_at	A	A1TS	POPTR_0006s12820	POPTR_0006s12820 (9)	scaffold_6:9985319-9985489(+) (9)	NA	NA	NA	AT2G37025.2	TRF-like 8 	LOC_Os02g53670.1	"MYB family transcription factor, putative, expressed"	Medtr1g076560.1	Homeodomain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12406.1.S1_at	A	A1MS	POPTR_0015s09190	POPTR_0015s09190 (9)	scaffold_15:10467608-10468342(+) (11)	NA	NA	NA	AT5G50150.1	Protein of Unknown Function (DUF239) 	LOC_Os06g28000.1	"carboxyl-terminal peptidase, putative, expressed"	Medtr7g143030.1	"Protein of unknown function DUF239, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12409.1.S1_at	A	A1TS	POPTR_0013s08110	POPTR_0013s08110 (11)	scaffold_13:7052785-7053116(-) (11)	NA	O22881	Potassium transporter 2	AT2G40540.2	potassium transporter 2 	LOC_Os03g21890.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.124163.1.S1_at	A	A1TS	POPTR_0018s00930	POPTR_0018s00930 (10)	scaffold_18:854417-854916(-) (10)	NA	NA	NA	AT4G32680.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52343.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g44132.2	expressed protein	Medtr4g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124165.1.S1_at	A	A1TS	POPTR_0007s03540	POPTR_0007s03540 (10)	scaffold_7:2034395-2035725(+) (10)	NA	Q9ZT66	"Endo-1,3;1,4-beta-D-glucanase"	AT3G23600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33100.1	"endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed"	Medtr2g026480.1	Dienelactone hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.124192.1.S1_at	A	A1TS	POPTR_0017s02250	POPTR_0017s02250 (10)	scaffold_17:1669962-1670473(+) (10)	NA	Q9SZ83	Uncharacterized oxidoreductase At4g09670	AT1G66130.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g26400.2	"uncharacterized oxidoreductase, putative, expressed"	Medtr3g087060.1	"Oxidoreductase, N-terminal "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.124199.1.S1_at	A	A1TS	POPTR_0002s22810	POPTR_0002s22810 (11)	scaffold_2:19770977-19773354(-) (11)	NA	Q8L7U5	Serine/threonine-protein phosphatase BSL1	AT4G03080.1	BRI1 suppressor 1 (BSU1)-like 1 	LOC_Os05g05240.1	"serine/threonine protein phosphatase, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.12420.1.A1_at	A	A1TS	POPTR_0005s23260	POPTR_0005s23260 (11)	scaffold_5:22085184-22085523(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g38470.1	expressed protein	Medtr5g006290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12420.1.A1_s_at	A	A1TS	POPTR_0005s23260	POPTR_0005s23260 (11)	scaffold_5:22084970-22085420(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g38470.1	expressed protein	Medtr5g006290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124213.1.S1_at	A	A1TS	POPTR_0006s13790	POPTR_0006s13790 (11)	scaffold_6:11007843-11008123(-) (11)	NA	Q9LSQ3	Transcription factor bHLH82	AT5G58010.1	LJRHL1-like 3 	LOC_Os06g09370.2	"PTF1, putative, expressed"	Medtr8g145720.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.124217.1.S1_s_at	A	A1TS	POPTR_0007s13040	POPTR_0007s13040 (11)	scaffold_7:13221496-13222523(-) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT2G18280.2	tubby like protein 2 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12425.1.S1_at	A	A1TS	POPTR_0014s09620	POPTR_0014s09620 (11)	scaffold_14:7176109-7177796(-) (11)	NA	NA	NA	AT2G46580.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os03g02450.2	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.12425.1.S1_s_at	A	A1TS	POPTR_0014s09620	POPTR_0014s09620 (11)	scaffold_14:7176201-7176541(-) (11)	NA	NA	NA	AT2G46580.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os03g02450.2	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.12425.2.S1_a_at	A	A2TS	POPTR_0002s17450	POPTR_0002s17450 (11)//POPTR_0014s09620 (10)	scaffold_14:7177795-7177833(-) (10)//scaffold_2:13208199-13208237(-) (11)	NA	NA	NA	AT2G46580.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os03g02450.2	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.12425.2.S1_at	A	A1TS	POPTR_0002s17450	POPTR_0002s17450 (11)	scaffold_2:13206655-13206752(-) (11)	NA	NA	NA	AT2G46580.1	Pyridoxamine 5'-phosphate oxidase family protein 	LOC_Os03g02450.2	"pyridoxamine 5'-phosphate oxidase family protein, putative, expressed"	NA	NA	NA	GO:0010181|FMN binding	NA
PtpAffx.124268.1.S1_at	A	A1MS	POPTR_0014s15420	POPTR_0014s15420 (11)	scaffold_14:11483909-11485320(-) (11)	NA	O32107	Uncharacterized membrane protein yuiD	AT3G21610.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os01g67560.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12427.2.S1_s_at	A	A1MS	POPTR_0004s00620	POPTR_0004s00620 (11)	scaffold_4:237237-238308(+) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G22150.1	plant UBX domain-containing protein 3 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124277.1.S1_at	A	A1TS	POPTR_0007s06800	POPTR_0007s06800 (11)	scaffold_7:5160845-5161052(+) (11)	NA	NA	NA	AT4G39470.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g08930.1	"chloroplast lumen common family protein, putative, expressed"	Medtr3g144610.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124284.1.S1_s_at	A	A1TS	POPTR_0001s18760	POPTR_0001s18760 (11)	scaffold_1:15897983-15898572(+) (11)	NA	Q9C5H4	VHS domain-containing protein At3g16270	AT3G16270.1	ENTH/VHS family protein 	LOC_Os01g13160.1	expressed protein	Medtr8g015210.1	VHS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124286.1.S1_s_at	A	A1TS	POPTR_0002s09200	POPTR_0002s09200 (11)	scaffold_2:6514298-6515309(+) (11)	NA	NA	NA	AT5G02130.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g38330.1	"NDP1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124313.1.S1_at	A	A1MS	POPTR_0016s02210	POPTR_0016s02210 (11)	scaffold_16:1063796-1064250(+) (11)	NA	Q5BJZ6	UPF0586 protein C9orf41 homolog	AT2G32170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g43560.1	"AGAP007115-PA, putative, expressed"	AC233673_1.1	hypothetical protein AC233673.1 745-2078 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124319.1.S1_a_at	A	A3TS	POPTR_0018s03930	POPTR_0018s03930 (11)//POPTR_0018s03950 (11)//POPTR_0018s04340 (9)	scaffold_18:3284278-3284435(-) (9)//scaffold_18:3368782-3369250(+) (11)//scaffold_18:3391109-3391591(+) (11)//scaffold_18:3657158-3657314(-) (9)	NA	P73627	Uncharacterized protein sll1770	AT5G24810.1	ABC1 family protein 	LOC_Os06g48770.1	"OsSBeL1 - Putative Serine Beta-Lactamase homologue, expressed"	Medtr1g010020.1	"ABC-1; Penicillin-binding protein, transpeptidase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124321.1.S1_s_at	A	A1TS	POPTR_0019s07720	POPTR_0019s07720 (11)	scaffold_19:8851878-8853273(+) (11)	NA	NA	NA	AT5G16810.1	Protein kinase superfamily protein 	LOC_Os02g46750.2	expressed protein	Medtr5g006320.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12435.1.S1_s_at	A	A1TS	POPTR_0001s07020	POPTR_0001s07020 (11)	scaffold_1:5358498-5358988(+) (11)	NA	Q0JNR2	Cysteine proteinase inhibitor 12	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
PtpAffx.124350.1.S1_at	A	A1TS	POPTR_0010s25420	POPTR_0010s25420 (10)	scaffold_10:21112709-21113140(-) (10)	NA	O94901	SUN domain-containing protein 1	AT5G04990.1	SAD1/UNC-84 domain protein 1 	LOC_Os01g16220.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr8g047470.1	"Sad1/UNC-like, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124363.1.S1_s_at	A	A1TS	POPTR_0005s27480	POPTR_0005s27480 (11)	scaffold_5:25123431-25123895(+) (11)	NA	Q9SFX2	U-box domain-containing protein 43	AT1G76390.2	ARM repeat superfamily protein 	LOC_Os12g17900.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr7g145720.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.124368.1.S1_at	A	A1TS	POPTR_0012s05680	POPTR_0012s05680 (11)	scaffold_12:5442027-5444644(+) (11)	POPTR_0015s03350 (6)	NA	NA	AT1G18470.1	Transmembrane Fragile-X-F-associated protein 	LOC_Os03g49900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g118030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12437.1.A1_at	A	A1TS	POPTR_0006s15080	POPTR_0006s15080 (11)	scaffold_6:12527716-12528156(-) (11)	NA	Q9LTS7	Zinc finger CCCH domain-containing protein 65	AT5G56930.1	CCCH-type zinc finger family protein 	LOC_Os01g39100.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g104100.1	hypothetical protein 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.124389.1.S1_at	A	A1TS	POPTR_0002s07050	POPTR_0002s07050 (11)	scaffold_2:4768779-4769452(-) (11)	POPTR_0005s21280 (6)	P54772	Histidine decarboxylase	AT1G43710.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os02g33710.1	"decarboxylase, putative, expressed"	Medtr2g008250.1	Pyridoxal-dependent decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12439.1.S1_a_at	A	A1TS	POPTR_0011s09080	POPTR_0011s09080 (11)	scaffold_11:11189218-11189373(-) (11)	NA	NA	NA	AT5G55530.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os03g09840.2	"C2 domain containing protein, putative, expressed"	Medtr3g076960.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12439.10.S1_at	A	A1MS	POPTR_0010s08060	POPTR_0010s08060 (11)	scaffold_10:9009838-9009931(+) (11)	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os02g40880.1	"ribosomal protein L14, putative, expressed"	Medtr8g138420.1	Ribosomal protein L14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.12439.3.A1_a_at	A	A1TS	POPTR_0006s08630	POPTR_0006s08630 (11)	scaffold_6:6312045-6312181(-) (11)	NA	O80932	Expansin-A3	AT2G37640.1	Barwin-like endoglucanases superfamily protein 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12439.5.S1_a_at	A	A1TS	POPTR_0011s09080	POPTR_0011s09080 (11)	scaffold_11:11190258-11190735(-) (11)	NA	NA	NA	AT5G55530.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os03g09840.2	"C2 domain containing protein, putative, expressed"	Medtr3g076960.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12440.1.S1_at	A	A1TS	POPTR_0005s10920	POPTR_0005s10920 (11)	scaffold_5:7855001-7855510(-) (11)	NA	Q9FT72	ATP-dependent DNA helicase Q-like 3	AT4G35740.2	DEAD/DEAH box RNA helicase family protein  	LOC_Os02g54020.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g049580.1	"Helicase, C-terminal "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.124413.1.S1_s_at	A	A1TS	POPTR_0005s20230	POPTR_0005s20230 (11)	scaffold_5:19257205-19258232(-) (11)	NA	NA	NA	AT1G77460.2	Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein 	LOC_Os11g08090.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124420.3.S1_a_at	A	A1TS	POPTR_0001s44820	POPTR_0001s44820 (11)	scaffold_1:45188617-45188652(+) (11)//scaffold_1:45213398-45213433(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124420.4.S1_at	A	A1MS	POPTR_0001s44820	POPTR_0001s44820 (11)	scaffold_1:45213158-45213508(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12443.3.A1_at	A	A1TA	POPTR_0013s15380	POPTR_0013s15380 (10)	scaffold_13:15377670-15378166(+) (10)	NA	Q43054	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.12443.4.A1_s_at	A	A1TS	POPTR_0013s15380	POPTR_0013s15380 (11)	scaffold_13:15377798-15378159(-) (11)	NA	Q43054	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.124431.1.A1_at	A	A1TA	POPTR_0014s03840	POPTR_0014s03840 (10)	scaffold_14:3064270-3064792(+) (10)	NA	Q9ZQE5	Pentatricopeptide repeat-containing protein At2g15690	AT2G15690.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g53610.1	"selenium-binding protein, related, putative, expressed"	Medtr6g093250.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124448.1.S1_at	A	A1TS	POPTR_0019s15220	POPTR_0019s15220 (11)	scaffold_19:15783625-15784558(-) (11)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.124466.1.S1_at	A	A1TS	POPTR_0009s06130	POPTR_0009s06130 (11)	scaffold_9:6013113-6013259(-) (11)	NA	NA	NA	AT5G28040.1	DNA-binding storekeeper protein-related transcriptional regulator 	LOC_Os07g44200.1	"transcription regulator, putative, expressed"	Medtr1g096530.1	Protein of unknown function DUF573 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124482.1.S1_at	A	A1TS	POPTR_0018s09210	POPTR_0018s09210 (11)	scaffold_18:10086087-10087140(-) (11)	NA	Q53HY2	Ninja-family protein mc410	AT4G28910.3	novel interactor of JAZ 	LOC_Os05g48500.3	expressed protein	Medtr6g098770.1	Protein of unknown function DUF1675 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124503.1.S1_at	A	A1TS	POPTR_0008s06790	POPTR_0008s06790 (10)	scaffold_8:4072906-4074019(+) (10)	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g093610.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.124508.1.S1_at	A	A1TS	POPTR_0001s10930	POPTR_0001s10930 (10)	scaffold_1:8480633-8480792(-) (10)	NA	Q8VY91	"30S ribosomal protein S6 alpha, chloroplastic"	AT1G64510.1	Translation elongation  factor EF1B/ribosomal protein S6 family protein 	LOC_Os03g62630.1	"ribosomal protein S6, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124513.1.S1_at	A	A1TS	POPTR_0002s15610	POPTR_0002s15610 (11)	scaffold_2:11650823-11651339(+) (11)	NA	Q0WV12	Homeobox-leucine zipper protein ANTHOCYANINLESS 2	AT4G00730.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os02g45250.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.124525.1.S1_s_at	A	A2TS	POPTR_0004s22080	POPTR_0009s01980 (11)//POPTR_0004s22080 (11)	scaffold_4:21010249-21011939(+) (11)//scaffold_9:2521538-2522833(+) (11)	NA	Q86VX9	Vacuolar fusion protein MON1 homolog A	AT2G28390.1	SAND family protein 	LOC_Os01g74460.2	"vacuolar fusion protein MON1 homolog A, putative, expressed"	Medtr2g110240.1	Yeast 73.5kDa hypothetical-related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124545.1.S1_s_at	A	A1TS	POPTR_0002s23170	POPTR_0002s23170 (11)	scaffold_2:20587778-20589490(+) (11)	NA	P11435	Carboxyvinyl-carboxyphosphonate phosphorylmutase	AT2G43180.1	Phosphoenolpyruvate carboxylase family protein 	LOC_Os04g42580.1	"carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed"	Medtr7g005900.1	Isocitrate lyase and phosphorylmutase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12458.1.S1_at	A	A1TS	POPTR_0006s14310	POPTR_0006s14310 (10)	scaffold_6:11633765-11634323(+) (10)	NA	Q93VM8	Copper transporter 5	AT5G20650.1	copper transporter 5 	LOC_Os09g26900.1	"ctr copper transporter family protein, putative, expressed"	Medtr3g139090.1	Ctr copper transporter 	GO:0006825|copper ion transport	GO:0005375|copper ion transmembrane transporter activity	GO:0016021|integral to membrane
PtpAffx.124581.1.S1_s_at	A	A1TS	POPTR_0005s10450	POPTR_0005s10450 (9)	scaffold_5:7501728-7502892(+) (10)	NA	Q9BSD7	Nucleoside-triphosphatase C1orf57	AT5G66005.3	Expressed protein 	NA	NA	Medtr5g024190.1	AAA ATPase 	NA	GO:0016740|transferase activity||GO:0005524|ATP binding	NA
PtpAffx.124583.1.S1_s_at	A	A2TS	POPTR_0002s00880	POPTR_0002s00880 (11)//POPTR_0005s27510 (11)	scaffold_2:414336-415071(+) (11)//scaffold_5:25137343-25138094(-) (11)	NA	P93006	Probable protein phosphatase 2C 27	AT2G33700.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr3g160100.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12459.1.A1_at	A	A1TS	POPTR_0002s17140	POPTR_0002s17140 (10)	scaffold_2:12930898-12932258(+) (11)	NA	Q6IQ49	UPF0667 protein C1orf55	AT4G01000.1	Ubiquitin-like superfamily protein 	LOC_Os01g48930.1	"splicing factor-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124592.1.S1_s_at	A	A1TS	POPTR_0002s18900	POPTR_0002s18900 (11)	scaffold_2:14800678-14801037(+) (11)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os10g01550.2	"transposon protein, putative, unclassified, expressed"	Medtr8g133990.1	Octicosapeptide/Phox/Bem1p; Adipokinetic hormone; Plant MuDR transposase 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.124599.1.S1_at	A	A1TS	POPTR_0018s07580	POPTR_0018s07580 (11)	scaffold_18:7964179-7964633(-) (11)	NA	NA	NA	AT4G32960.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits to 106 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os06g05720.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124607.1.S1_at	A	A1TS	POPTR_0010s23520	POPTR_0010s23520 (9)	scaffold_10:20073065-20074973(+) (9)	NA	NA	NA	AT2G36840.1	ACT-like superfamily protein 	LOC_Os09g39740.1	"ACT domain containing protein, expressed"	Medtr7g124000.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.124616.1.S1_s_at	A	A1TS	POPTR_0017s13810	POPTR_0017s13810 (11)	scaffold_17:14035501-14035836(+) (11)	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.124618.1.S1_at	A	A1TS	POPTR_0002s14380	POPTR_0002s14380 (11)	scaffold_2:10643603-10644038(+) (11)	NA	O49741	GATA transcription factor 2	AT2G45050.1	GATA transcription factor 2 	LOC_Os05g44400.1	"GATA zinc finger domain containing protein, expressed"	Medtr3g130480.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.124621.1.S1_s_at	A	A1TS	POPTR_0001s07850	POPTR_0001s07850 (11)	scaffold_1:5946191-5946599(+) (11)	NA	P37120	"Flavonoid 3',5'-hydroxylase"	AT4G12320.1	"cytochrome P450, family 706, subfamily A, polypeptide 6 "	LOC_Os08g43440.1	"cytochrome P450, putative, expressed"	Medtr3g169570.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.124623.1.S1_at	A	A1TS	POPTR_0002s05470	POPTR_0002s05470 (11)	scaffold_2:3568526-3572049(+) (11)	NA	NA	NA	AT4G02830.1	unknown protein; Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr1g086470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124644.1.S1_at	A	A1TS	POPTR_0010s14480	POPTR_0010s14480 (11)	scaffold_10:14075493-14077098(-) (11)	NA	Q6NQI8	LAG1 longevity assurance homolog 3	AT1G13580.3	LAG1 longevity assurance homolog 3 	LOC_Os02g37080.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.124647.1.S1_at	A	A1TS	POPTR_0014s18660	POPTR_0014s18660 (9)	scaffold_14:15999999-16000654(-) (9)	NA	Q5EB92	WD repeat-containing protein 70	AT2G20330.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os10g32710.3	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g117340.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124648.1.S1_s_at	A	A1TS	POPTR_0008s11650	POPTR_0008s11650 (11)	scaffold_8:7442287-7442519(+) (11)	NA	Q6GP15	Mediator of RNA polymerase II transcription subunit 25	AT1G25540.1	phytochrome and flowering time regulatory protein (PFT1) 	LOC_Os09g13610.1	"PFT1, putative, expressed"	Medtr5g068600.1	"PFT1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124649.1.S1_a_at	A	A1TS	POPTR_0019s08330	POPTR_0019s08330 (11)	scaffold_19:9824981-9825382(+) (11)	NA	Q6AWX0	D-xylose-proton symporter-like 2	AT5G17010.3	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.124649.1.S1_at	A	A1TS	POPTR_0019s08330	POPTR_0019s08330 (10)	scaffold_19:9826806-9827723(+) (10)	NA	Q6AWX0	D-xylose-proton symporter-like 2	AT5G17010.3	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.124649.2.A1_at	A	A1MS	POPTR_0019s08330	POPTR_0019s08330 (9)	scaffold_19:9825070-9825600(+) (9)	NA	Q6AWX0	D-xylose-proton symporter-like 2	AT5G17010.3	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.124650.1.S1_at	A	A1TS	POPTR_0018s02190	POPTR_0018s02190 (9)	scaffold_18:1939178-1939512(-) (9)	NA	D2XNQ8	Flotillin-like protein 1	AT5G25260.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os10g34040.1	"nodulin, putative, expressed"	Medtr3g137810.1	"nodulin, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124651.1.S1_at	A	A1TS	POPTR_0009s02100	POPTR_0009s02100 (11)	scaffold_9:2709659-2710647(-) (11)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr2g104740.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
PtpAffx.124666.1.S1_at	A	A1TS	POPTR_0008s14250	POPTR_0008s14250 (9)	scaffold_211:23704-26034(-) (9)//scaffold_8:9426296-9427209(+) (9)	POPTR_0008s14260 (8)//POPTR_0211s00210 (6)	Q8BV79	TPR and ankyrin repeat-containing protein 1	AT1G65810.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g51090.1	"tRNA-splicing endonuclease positive effector-related, putative, expressed"	Medtr3g169640.1	"Helicase, superfamily 1, UvrD-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124689.1.S1_at	A	A1TS	POPTR_0002s24970	POPTR_0002s24970 (11)	scaffold_2:22161726-22163490(+) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT3G25230.1	rotamase FKBP 1 	LOC_Os08g41390.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.124690.1.S1_at	A	A1TS	POPTR_0003s12750	POPTR_0003s12750 (11)	scaffold_3:13231518-13234157(+) (11)	POPTR_0001s09380 (6)	NA	NA	AT4G11560.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g34330.1	"BAH domain containing protein, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding	NA
PtpAffx.124709.1.S1_at	A	A1TS	POPTR_0002s16420	POPTR_0002s16420 (10)	scaffold_2:12286160-12288512(-) (10)	NA	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
PtpAffx.12471.1.S1_at	A	A1TS	POPTR_0004s06700	POPTR_0004s06700 (11)	scaffold_4:5364176-5365958(-) (11)	NA	NA	NA	AT2G25720.1	unknown protein; Has 38 Blast hits to 38 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g47820.1	expressed protein	Medtr6g038880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124711.1.S1_at	A	A1TS	POPTR_0006s21940	POPTR_0006s21940 (9)	scaffold_6:20910942-20911445(+) (9)	NA	NA	NA	AT3G05675.1	BTB/POZ domain-containing protein 	LOC_Os07g47260.1	"H-BTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	AC233661_10.2	hypothetical protein AC233661.2 56500-58369 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.124715.1.S1_at	A	A1TS	POPTR_0013s06910	POPTR_0013s06910 (10)	scaffold_13:5608715-5609051(-) (10)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G17630.1	Nucleotide/sugar transporter family protein 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr2g034800.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.124719.1.S1_s_at	A	A2TS	POPTR_0004s21670	POPTR_0004s21670 (11)//POPTR_0009s16920 (11)	scaffold_4:20729641-20730348(+) (10)//scaffold_9:12767960-12768606(+) (11)	NA	Q9XGM8	"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase"	AT4G38240.2	"alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative "	LOC_Os02g58590.1	"N-acetylglucosaminyltransferase I, putative, expressed"	Medtr3g164080.1	"Glycosyl transferase, family 13 "	GO:0006487|protein amino acid N-linked glycosylation	"GO:0003827|""alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity"""	GO:0000139|Golgi membrane
PtpAffx.124732.1.S1_s_at	A	A1TS	POPTR_0019s09350	POPTR_0019s09350 (11)	scaffold_19:10922559-10923226(+) (11)	NA	NA	NA	AT2G40815.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	NA	NA	Medtr5g077910.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124734.1.S1_at	A	A1TS	POPTR_0011s12320	POPTR_0011s12320 (10)	scaffold_11:15044824-15048491(-) (10)	NA	Q9XSC3	WD repeat-containing protein 44	AT3G15470.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58180.1	"WD-40 repeat family protein, putative, expressed"	Medtr7g067570.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124766.1.S1_at	A	A1TS	POPTR_0016s12700	POPTR_0016s12700 (11)	scaffold_16:12080532-12082421(+) (11)	NA	P33303	Succinate/fumarate mitochondrial transporter	AT5G01340.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18160.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124786.1.S1_at	A	A1TS	POPTR_0019s03980	POPTR_0019s03980 (11)	scaffold_19:1078954-1079159(+) (11)//scaffold_19:4086867-4087077(+) (11)//scaffold_19:7029272-7029479(+) (10)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	LOC_Os02g02930.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.12479.1.S1_s_at	A	A1TS	POPTR_0008s01310	POPTR_0008s01310 (11)	scaffold_8:634843-635171(-) (11)	NA	Q66GR0	Fasciclin-like arabinogalactan protein 17	AT5G06390.1	FASCICLIN-like arabinogalactan protein 17 precursor 	LOC_Os03g57460.1	"fasciclin domain containing protein, expressed"	Medtr2g104610.1	Beta-Ig-H3/fasciclin; Myristoyl-CoA:protein N-myristoyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12481.1.A1_at	A	A1TS	POPTR_0008s06430	POPTR_0008s06430 (11)	scaffold_8:3819815-3820720(+) (11)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g089140.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.12481.2.A1_at	A	A1TS	POPTR_0010s20050	POPTR_0010s20050 (11)	scaffold_10:17803897-17804211(-) (11)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g089140.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.124818.1.S1_at	A	A1TS	POPTR_0011s11680	POPTR_0011s11680 (11)	scaffold_11:14458532-14459703(-) (11)	NA	B2SYT3	Ribosomal protein L11 methyltransferase	AT5G53920.1	ribosomal protein L11 methyltransferase-related 	LOC_Os05g41800.1	"ribosomal protein L11 methyltransferase-related, putative, expressed"	Medtr8g071230.1	Ribosomal L11 methyltransferase 	GO:0006479|protein amino acid methylation||GO:0044281|small molecule metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0008276|protein methyltransferase activity	GO:0005737|cytoplasm
PtpAffx.124822.1.S1_at	A	A2TS	POPTR_0013s03430	POPTR_0013s03560 (11)//POPTR_0013s03430 (11)	scaffold_13:2118373-2120326(+) (11)//scaffold_13:2260118-2262088(-) (11)	NA	O23969	Pollen-specific protein SF21	AT5G56750.1	N-MYC downregulated-like 1 	LOC_Os01g09670.1	"pollen-specific protein SF21, putative, expressed"	Medtr1g096280.1	Ndr 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124829.1.S1_at	A	A1TS	POPTR_0017s08370	POPTR_0017s08370 (11)	scaffold_17:6886999-6888902(-) (11)	NA	NA	NA	AT2G32760.1	unknown protein; Has 229 Blast hits to 229 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os06g50110.1	expressed protein	Medtr4g133650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124837.1.A1_at	A	A1TS	POPTR_0003s07750	POPTR_0003s07750 (11)	scaffold_3:9253222-9253871(-) (11)	NA	Q84JU6	E3 ubiquitin-protein ligase HOS1	AT2G39810.1	ubiquitin-protein ligases 	LOC_Os03g52700.1	expressed protein	Medtr5g013030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.124839.1.A1_at	A	A1TS	POPTR_0010s12280	POPTR_0010s12280 (11)	scaffold_10:12320633-12323140(+) (11)	NA	Q55681	ATP-dependent DNA helicase recG	AT2G01440.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os02g48100.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g034620.1	ATP-requiring DNA helicase RecQ 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.124847.1.S1_s_at	A	A1TS	POPTR_0013s05480	POPTR_0013s05480 (11)	scaffold_13:3921209-3921931(+) (11)	NA	Q43314	Glutamate dehydrogenase 1	AT5G18170.1	glutamate dehydrogenase 1 	LOC_Os03g58040.3	"glutamate dehydrogenase protein, putative, expressed"	Medtr6g030900.1	"Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.124853.1.S1_s_at	A	A1TS	POPTR_0005s25880	POPTR_0005s25880 (11)	scaffold_5:24099697-24100283(+) (11)	NA	B9F166	Probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL2	AT5G06300.1	Putative lysine decarboxylase family protein 	LOC_Os02g41770.1	"uncharacterized protein PA4923, putative"	Medtr3g156140.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12487.1.S1_at	A	A1TS	POPTR_0003s15280	POPTR_0003s15280 (9)	scaffold_3:15126727-15127263(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.12493.1.A1_at	A	A1TS	POPTR_0013s11360	POPTR_0013s11360 (11)	scaffold_13:12008117-12008514(+) (11)	NA	Q9S9K9	Transcription factor MYB3	AT1G22640.1	myb domain protein 3 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12496.1.S1_at	A	A1TS	POPTR_0001s45910	POPTR_0001s45910 (11)	scaffold_1:46414916-46415066(+) (11)	NA	NA	NA	AT1G33265.1	Transmembrane proteins 14C 	LOC_Os04g48840.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12496.2.A1_at	A	A1TS	POPTR_0011s15010	POPTR_0011s15010 (11)	scaffold_11:17210776-17213365(-) (11)	NA	NA	NA	AT1G33265.1	Transmembrane proteins 14C 	LOC_Os04g48840.1	expressed protein	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.12497.1.S1_at	A	A1TS	POPTR_0014s15660	POPTR_0014s15660 (11)	scaffold_14:11675761-11676546(+) (11)	NA	Q8VYE5	"Glucan endo-1,3-beta-glucosidase 12"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.12497.1.S1_s_at	A	A1TS	POPTR_0014s15660	POPTR_0014s15660 (11)	scaffold_14:11675624-11676671(+) (11)	NA	Q8VYE5	"Glucan endo-1,3-beta-glucosidase 12"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.124979.1.S1_at	A	A1TS	POPTR_0010s15260	POPTR_0010s15260 (11)	scaffold_10:14580982-14581588(-) (11)	NA	Q8WWQ0	PH-interacting protein	AT5G49430.1	WD40/YVTN repeat-like-containing domain;Bromodomain 	LOC_Os03g19340.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g038600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125.1.S1_at	A	A1TS	POPTR_0003s12340	POPTR_0003s12340 (11)	scaffold_3:12942906-12943480(-) (11)	NA	Q641W4	Replication factor C subunit 2	AT1G63160.1	replication factor C 2 	LOC_Os04g48060.1	"RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed"	Medtr3g100710.1	"AAA ATPase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
PtpAffx.1250.1.S1_a_at	A	A1TS	POPTR_0015s13440	POPTR_0015s13440 (11)	scaffold_15:13394029-13394448(-) (11)	NA	NA	NA	AT5G52200.1	phosphoprotein phosphatase inhibitors 	LOC_Os05g23610.1	"protein phosphatase inhibitor 2 containing protein, expressed"	NA	NA	GO:0023051|regulation of signaling process||GO:0023052|signaling||GO:0009966|regulation of signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0043666|regulation of phosphoprotein phosphatase activity	GO:0004864|phosphoprotein phosphatase inhibitor activity	NA
PtpAffx.1250.3.A1_a_at	A	A1TS	POPTR_0012s13450	POPTR_0012s13450 (11)	scaffold_12:13607587-13608505(-) (11)	NA	NA	NA	AT5G52200.1	phosphoprotein phosphatase inhibitors 	LOC_Os05g23610.2	"protein phosphatase inhibitor 2 containing protein, expressed"	NA	NA	GO:0023051|regulation of signaling process||GO:0023052|signaling||GO:0009966|regulation of signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0043666|regulation of phosphoprotein phosphatase activity	GO:0004864|phosphoprotein phosphatase inhibitor activity	NA
PtpAffx.1250.4.S1_at	A	A1MS	POPTR_0015s13440	POPTR_0015s13440 (11)	scaffold_15:13393978-13394520(-) (11)	NA	NA	NA	AT5G52200.1	phosphoprotein phosphatase inhibitors 	LOC_Os05g23610.1	"protein phosphatase inhibitor 2 containing protein, expressed"	NA	NA	GO:0023051|regulation of signaling process||GO:0023052|signaling||GO:0009966|regulation of signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0043666|regulation of phosphoprotein phosphatase activity	GO:0004864|phosphoprotein phosphatase inhibitor activity	NA
PtpAffx.125014.1.S1_s_at	A	A1TS	POPTR_0002s22380	POPTR_0002s22380 (11)	scaffold_2:19085348-19085908(-) (11)	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125017.1.S1_s_at	A	A1TS	POPTR_0018s01990	POPTR_0018s01990 (11)	scaffold_18:1791992-1792895(-) (11)	NA	Q949Y3	Bifunctional purple acid phosphatase 26	AT5G34850.1	purple acid phosphatase 26 	LOC_Os06g43640.2	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g121710.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.125062.1.S1_at	A	A1TS	POPTR_0018s12160	POPTR_0018s12160 (10)	scaffold_18:12727434-12727839(-) (10)	NA	B3MPC0	Zinc finger CCCH-type with G patch domain-containing protein	AT3G09850.1	D111/G-patch domain-containing protein 	LOC_Os08g19170.1	"G-patch domain containing protein, expressed"	Medtr8g122840.1	D111/G-patch; Single-stranded nucleic acid binding R3H 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.125065.1.S1_at	A	A1TS	POPTR_0015s10620	POPTR_0015s10620 (10)	scaffold_15:11481628-11482098(-) (10)	NA	Q9QYY8	Spastin	AT4G02480.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g117540.1	"AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.12507.1.A1_at	A	A1TS	POPTR_0003s09400	POPTR_0003s09400 (11)	scaffold_3:10689020-10690083(-) (11)	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr8g077680.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.12507.2.S1_s_at	A	A2TS	POPTR_0001s02100	POPTR_0001s02100 (11)//POPTR_0003s09400 (11)	scaffold_1:1572295-1574029(+) (11)//scaffold_3:10691033-10692480(-) (11)	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr8g077680.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.1251.1.S1_at	A	A1TS	POPTR_0014s15580	POPTR_0014s15580 (10)	scaffold_14:11592607-11593137(-) (10)	NA	Q9LVE0	Nitrate transporter 1.3	AT3G21670.1	Major facilitator superfamily protein 	LOC_Os02g37040.1	"peptide transporter PTR3-A, putative, expressed"	Medtr5g093170.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.1251.2.S1_at	A	A1TS	POPTR_0002s21630	POPTR_0002s21630 (11)	scaffold_2:18144799-18145246(-) (11)	NA	Q9LVE0	Nitrate transporter 1.3	AT3G21670.1	Major facilitator superfamily protein 	LOC_Os02g37040.1	"peptide transporter PTR3-A, putative, expressed"	Medtr5g093170.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.125148.1.S1_at	A	A1TS	POPTR_0006s28360	POPTR_0006s28360 (11)	scaffold_6:26065646-26065684(-) (11)	NA	Q96361	ADP-ribosylation factor 1	AT2G24765.1	ADP-ribosylation factor 3 	LOC_Os08g15040.1	"ADP-ribosylation factor, putative, expressed"	Medtr8g128220.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.125154.1.S1_at	A	A1MS	POPTR_0019s06030	POPTR_0019s06030 (9)	scaffold_19:6487183-6487737(-) (10)	NA	Q9P6P3	Serine/threonine-protein kinase ppk15	AT5G35980.1	yeast YAK1-related gene 1 	LOC_Os02g47410.1	"protein kinase, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.125163.2.S1_s_at	A	A1TS	POPTR_0015s01950	POPTR_0015s01950 (11)	scaffold_15:1367385-1368179(+) (11)	NA	Q03460	"Glutamate synthase [NADH], amyloplastic"	AT5G53460.3	NADH-dependent glutamate synthase 1 	LOC_Os01g48960.1	"glutamate synthase, chloroplast precursor, putative, expressed"	Medtr7g106980.1	"Glutamate synthase, large subunit region 1 and 3, putative; Glutamate synthase, eukaryotic "	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process||GO:0044281|small molecule metabolic process	GO:0015930|glutamate synthase activity||GO:0050660|FAD binding	NA
PtpAffx.125170.1.S1_s_at	A	A1TS	POPTR_0006s25960	POPTR_0006s25960 (11)	scaffold_6:24260727-24261690(-) (11)	NA	O49343	Pentatricopeptide repeat-containing protein At2g30780	AT2G30780.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06370.2	"PPR repeat domain containing protein, putative, expressed"	Medtr1g009460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125211.1.S1_s_at	A	A2TS	POPTR_0001s27440	POPTR_0001s27440 (11)//POPTR_0009s06650 (11)	scaffold_1:26341626-26344192(-) (11)//scaffold_9:6389249-6391746(-) (11)	NA	Q9SZ30	"Imidazole glycerol phosphate synthase hisHF, chloroplastic"	AT4G26900.1	HIS HF 	LOC_Os03g15120.1	"imidazole glycerol phosphate synthase hisHF, chloroplast precursor, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.125245.1.S1_a_at	A	A1TS	POPTR_0019s07920	POPTR_0019s07920 (11)	scaffold_19:9219509-9219695(+) (11)	NA	P91924	ADP-ribosylation factor	AT5G17060.1	ADP-ribosylation factor B1B 	LOC_Os10g42940.1	"miro, putative, expressed"	Medtr4g106940.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.125245.2.S1_at	A	A1MS	POPTR_0013s09660	POPTR_0013s09660 (10)	scaffold_13:9503751-9504140(-) (10)	NA	P91924	ADP-ribosylation factor	AT5G17060.1	ADP-ribosylation factor B1B 	LOC_Os10g42940.1	"miro, putative, expressed"	Medtr4g106940.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.125257.1.S1_a_at	A	A2TS	POPTR_0006s14830	POPTR_0018s05410 (11)//POPTR_0006s14830 (11)	scaffold_18:4946919-4946961(-) (11)//scaffold_6:12255809-12255851(-) (11)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125257.1.S1_at	A	A1TS	POPTR_0006s14830	POPTR_0006s14830 (9)	scaffold_6:12255792-12256663(-) (9)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125257.2.S1_a_at	A	A1TS	POPTR_0018s05410	POPTR_0018s05410 (11)	scaffold_18:4945947-4947366(-) (11)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125257.3.S1_at	A	A1MS	POPTR_0018s05410	POPTR_0018s05410 (11)	scaffold_18:4945263-4945621(-) (11)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125271.1.S1_s_at	A	A1TS	POPTR_0007s01950	POPTR_0007s01950 (11)	scaffold_7:1107640-1107872(+) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G07500.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr2g118460.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125283.1.S1_x_at	A	A1TS	POPTR_0009s03160	POPTR_0009s03160 (9)	scaffold_9:3827218-3827459(-) (10)	NA	Q9LQQ8	Probable serine/threonine-protein kinase RLCKVII	AT1G07870.2	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g113860.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.125310.1.S1_at	A	A1MS	POPTR_0018s05010	POPTR_0018s05010 (11)	scaffold_18:4435539-4435609(-) (11)	NA	Q8UVD9	Far upstream element-binding protein 2	AT2G25970.1	KH domain-containing protein 	LOC_Os02g13130.1	"KH domain-containing protein, putative, expressed"	Medtr1g020830.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.125321.1.S1_at	A	A1TS	POPTR_0005s24860	POPTR_0005s24860 (10)	scaffold_5:23284328-23285722(+) (10)	NA	P42158	Casein kinase I isoform delta-like	AT4G28540.1	casein kinase I-like 6 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.125321.2.S1_at	A	A1TS	POPTR_0002s03730	POPTR_0002s03730 (11)	scaffold_2:2321094-2321454(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G28540.1	casein kinase I-like 6 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.125332.1.S1_at	A	A1TS	POPTR_0007s15180	POPTR_0007s15180 (9)	scaffold_7:14800492-14800990(+) (9)	NA	B6EXY6	Beta-amyrin synthase	AT1G78950.1	Terpenoid cyclases family protein 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.125337.1.S1_at	A	A1TS	POPTR_0011s13970	POPTR_0011s13970 (11)	scaffold_11:16571963-16574851(+) (11)	NA	NA	NA	AT1G50910.1	unknown protein; Has 1105 Blast hits to 802 proteins in 217 species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other Eukaryotes - 207 (source: NCBI BLink). 	LOC_Os09g32710.1	expressed protein	Medtr3g020830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125350.1.S1_at	A	A1TS	POPTR_0013s04560	POPTR_0013s04560 (10)	scaffold_13:3124002-3124222(-) (10)	NA	Q9FNC7	Histone-lysine N-methyltransferase SUVR2	AT5G43990.5	SET-domain containing protein lysine methyltransferase family protein 	LOC_Os02g40770.2	"SET domain containing protein, expressed"	Medtr1g093770.1	Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.125359.1.S1_at	A	A1TS	POPTR_0005s21130	POPTR_0005s21130 (11)	scaffold_5:20265048-20265524(-) (11)	NA	P68349	Dof zinc finger protein DOF1.2	AT1G21340.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os05g36900.1	"dof zinc finger domain containing protein, putative"	Medtr3g125030.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.125364.1.S1_at	A	A1TS	POPTR_0004s07380	POPTR_0004s07380 (11)	scaffold_4:6085196-6086859(-) (11)	NA	NA	NA	AT3G03270.2	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os02g53320.1	"universal stress protein domain containing protein, putative, expressed"	Medtr5g084990.2	UspA 	GO:0006950|response to stress	NA	NA
PtpAffx.125366.1.S1_s_at	A	A1TS	POPTR_0006s02220	POPTR_0006s02220 (11)	scaffold_6:1458111-1458532(-) (11)	NA	Q9FHZ1	Scarecrow-like protein 23	AT5G41920.1	GRAS family transcription factor 	LOC_Os07g38030.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g103580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125368.1.S1_at	A	A1TS	POPTR_0019s04110	POPTR_0019s04110 (10)	scaffold_19:4214327-4216256(+) (10)	NA	Q9M8Y5	GDSL esterase/lipase LTL1	AT3G04290.1	Li-tolerant lipase 1 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143160.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.125369.1.S1_at	A	A1TS	POPTR_0007s06890	POPTR_0007s06890 (11)	scaffold_7:5209495-5209960(-) (11)	NA	Q7Y1W9	Zinc finger A20 and AN1 domain-containing stress-associated protein 9	AT2G36320.1	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g111060.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.125394.1.S1_at	A	A1TS	POPTR_0004s14900	POPTR_0004s14900 (10)	scaffold_4:15562455-15562880(-) (10)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.125398.1.A1_at	A	A1TS	POPTR_0002s16750	POPTR_0002s16750 (11)	scaffold_2:12516853-12519156(+) (11)	NA	Q8S8M5	Protein ABIL1	AT2G46225.1	ABI-1-like 1 	LOC_Os01g43420.1	expressed protein	Medtr7g143400.1	"Protein ABIL2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125399.1.S1_at	A	A1TS	POPTR_0008s14780	POPTR_0008s14780 (11)	scaffold_8:9818681-9818756(+) (11)	NA	Q9ZVH4	Cullin-3A	AT1G26830.1	cullin 3 	LOC_Os02g51180.1	"cullin, putative, expressed"	AC146568_13.1	Cullin; Winged helix repressor DNA-binding AC146568.11 77878-70908 E EGN_Mt090430 200	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.125400.1.S1_s_at	A	A1TS	POPTR_0003s15120	POPTR_0003s15120 (11)	scaffold_3:14974268-14974933(+) (11)	NA	Q9C8Z4	Uncharacterized protein At3g06530	AT3G06530.2	ARM repeat superfamily protein 	LOC_Os04g46310.1	"HEAT repeat family protein, putative, expressed"	Medtr5g099720.1	"BP28, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125401.1.S1_at	A	A1TS	POPTR_0001s00380	POPTR_0001s00380 (9)	scaffold_1:259389-259744(-) (9)	NA	NA	NA	AT4G22560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G12450.1); Has 380 Blast hits to 380 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 374; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g44280.1	"zinc finger protein, putative"	Medtr5g012350.1	"AT1G62520, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125404.1.S1_at	A	A1TS	POPTR_0004s10510	POPTR_0004s10510 (10)	scaffold_4:9054862-9056738(+) (11)	NA	NA	NA	AT5G15880.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g02130.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125413.1.S1_at	A	A1TS	POPTR_0007s04550	POPTR_0007s04550 (10)	scaffold_7:2824170-2824592(+) (10)	NA	Q55EX9	Putative methyltransferase DDB_G0268948	AT4G22530.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g40660.1	"methyltransferase, putative, expressed"	Medtr7g107220.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.125423.1.S1_at	A	A1TS	POPTR_0013s00880	POPTR_0013s00880 (11)	scaffold_13:446995-448160(-) (11)	NA	Q96321	Importin subunit alpha-1	AT1G09270.2	importin alpha isoform 4 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
PtpAffx.125439.1.S1_s_at	A	A1TS	POPTR_0010s10930	POPTR_0010s10930 (11)	scaffold_10:11313829-11315061(+) (11)	NA	Q9H4L7	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	AT2G02090.1	SNF2 domain-containing protein / helicase domain-containing protein 	LOC_Os04g47830.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr5g019900.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.125442.1.S1_at	A	A1TS	POPTR_0001s12350	POPTR_0001s12350 (11)	scaffold_1:9566749-9566795(+) (11)	NA	Q7Y1X1	Esterase	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g037600.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.125442.1.S1_s_at	A	A1TS	POPTR_0001s12350	POPTR_0001s12350 (11)	scaffold_1:9566804-9567964(+) (11)	NA	Q7Y1X1	Esterase	AT3G26430.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr1g037600.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.125453.1.A1_a_at	A	A2TS	POPTR_0002s09800	POPTR_0002s09800 (11)//POPTR_0005s17170 (11)	scaffold_2:7027259-7027307(+) (11)//scaffold_5:14327829-14327877(+) (11)	NA	Q9D2H9	Leucine-rich repeat-containing protein 50	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.125453.1.A1_at	A	A1TS	POPTR_0005s17170	POPTR_0005s17170 (11)	scaffold_5:14328065-14328370(+) (11)	NA	Q9D2H9	Leucine-rich repeat-containing protein 50	AT1G78230.1	Outer arm dynein light chain 1 protein 	LOC_Os03g09070.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.125457.1.S1_at	A	A1MS	POPTR_0006s29120	POPTR_0006s29120 (9)	scaffold_6:26595356-26595852(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125515.1.S1_at	A	A1TS	POPTR_0009s14130	POPTR_0009s14130 (11)	scaffold_9:11137142-11137329(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G38470.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr1g143280.1	Tyrosine protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12552.1.A1_at	A	A1TS	POPTR_0010s20240	POPTR_0010s20240 (11)	scaffold_10:17917924-17918251(+) (11)	POPTR_0008s06280 (6)	NA	NA	AT5G05840.1	Protein of unknown function (DUF620) 	LOC_Os03g16060.1	expressed protein	Medtr3g092680.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125536.1.S1_at	A	A1TS	POPTR_0002s18190	POPTR_0002s18190 (10)	scaffold_2:14129595-14130140(+) (10)	NA	Q6R0H1	Protein LHY	AT1G01060.3	Homeodomain-like superfamily protein 	LOC_Os08g06110.5	"MYB family transcription factor, putative, expressed"	Medtr7g146200.1	"Ankyrin, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125577.1.A1_at	A	A1TS	POPTR_0001s32900	POPTR_0001s32900 (11)	scaffold_1:31173854-31174932(-) (11)	NA	P44446	Putative long-chain-fatty-acid--CoA ligase	AT3G23790.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g62850.1	"AMP-binding enzyme, putative, expressed"	Medtr3g104670.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.125581.1.A1_at	A	A1TS	POPTR_0011s14890	POPTR_0011s14890 (11)	scaffold_11:17139093-17140659(-) (11)	NA	Q9ASU1	Diacylglycerol O-acyltransferase 2	AT3G51520.1	diacylglycerol acyltransferase family 	LOC_Os06g22080.1	"diacylglycerol O-acyltransferase, putative, expressed"	Medtr5g024950.1	Diacylglycerol acyltransferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.125602.2.A1_a_at	A	A1TS	POPTR_0012s12960	POPTR_0012s12960 (11)	scaffold_12:13302319-13303149(-) (11)	NA	Q5F389	WW domain-containing oxidoreductase	AT4G23420.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.125608.1.A1_at	A	A2TS	POPTR_0008s01130	POPTR_0008s01130 (11)//POPTR_0010s25440 (11)	scaffold_10:21125140-21126419(+) (11)//scaffold_8:544973-546509(-) (11)	NA	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os01g59760.1	"bZIP transcription factor, putative, expressed"	Medtr8g047750.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.1257.1.S1_a_at	A	A1TS	POPTR_0001s07520	POPTR_0001s07520 (10)	scaffold_1:5649278-5649550(-) (10)	POPTR_0003s18530 (8)	A7S4N4	Probable serine incorporator	AT1G16180.2	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os02g54990.2	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.1257.1.S1_x_at	A	A1TS	POPTR_0003s18530	POPTR_0003s18530 (11)	scaffold_3:17581430-17582184(+) (11)	NA	Q5R533	Serine incorporator 3	AT1G16180.2	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os02g54990.2	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.1257.2.A1_at	A	A1TS	POPTR_0001s07520	POPTR_0001s07520 (11)	scaffold_1:5649191-5650053(-) (11)	NA	A7S4N4	Probable serine incorporator	AT1G16180.2	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os02g54990.2	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.1257.3.A1_at	A	A1TS	POPTR_0003s11060	POPTR_0003s11060 (9)	scaffold_3:11910192-11910657(+) (9)	NA	Q00451	36.4 kDa proline-rich protein	AT1G62500.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g43600.2	"LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1257.4.S1_a_at	A	A2TS	POPTR_0001s07520	POPTR_0001s07520 (11)//POPTR_0003s18530 (11)	scaffold_1:5651379-5652532(-) (11)//scaffold_3:17578997-17580153(+) (11)	NA	A7S4N4	Probable serine incorporator	AT1G16180.2	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os02g54990.2	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.1257.4.S1_at	A	A1TS	POPTR_0001s07520	POPTR_0001s07520 (11)	scaffold_1:5651449-5652513(-) (11)	NA	A7S4N4	Probable serine incorporator	AT1G16180.2	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os02g54990.2	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.125735.1.A1_at	A	A1TS	POPTR_0003s18550	POPTR_0003s18550 (11)	scaffold_3:17598892-17600852(+) (11)	NA	Q551H4	Serine/threonine-protein kinase fray2	AT1G79640.2	Protein kinase superfamily protein 	LOC_Os02g54900.1	"STE_PAK_Ste20_STLK.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g023360.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12575.1.A1_at	A	A1TS	POPTR_0011s11010	POPTR_0011s11010 (11)	scaffold_11:13713450-13715579(+) (11)	NA	B3DNN5	Anaphase-promoting complex subunit 6	AT1G78770.1	anaphase promoting complex 6 	LOC_Os03g13370.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g068500.1	"Cell division cycle protein 16 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12579.1.S1_s_at	A	A1TS	POPTR_0004s15370	POPTR_0004s15370 (11)	scaffold_4:16019905-16021423(+) (11)	NA	NA	NA	AT2G15900.1	"Phox-associated domain;Phox-like;Sorting nexin, C-terminal "	LOC_Os11g06040.1	"PX domain containing protein, putative, expressed"	Medtr4g128670.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.125792.1.A1_at	A	A1TS	POPTR_0005s08230	POPTR_0005s08230 (11)	scaffold_5:5674266-5674690(+) (11)	NA	Q9JIX8	Apoptotic chromatin condensation inducer in the nucleus	AT4G39680.2	SAP domain-containing protein 	LOC_Os03g26630.2	"SAP domain containing protein, expressed"	Medtr3g101020.1	Borrelia outer surface lipoprotein; DNA-binding SAP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.125795.1.A1_s_at	A	A1TS	POPTR_0012s13920	POPTR_0012s13920 (11)	scaffold_12:13864391-13864800(+) (11)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.125795.2.A1_at	A	A1MS	POPTR_0012s13920	POPTR_0012s13920 (11)	scaffold_12:13864499-13864733(+) (11)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.125797.1.A1_at	A	A1TS	POPTR_0004s04460	POPTR_0004s04460 (10)	scaffold_4:3236565-3236924(+) (10)	NA	NA	NA	AT1G28280.2	VQ motif-containing protein 	LOC_Os01g54400.1	"VQ domain containing protein, putative, expressed"	Medtr2g017460.1	DNA-binding WRKY; VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1258.1.S1_s_at	A	A1TS	POPTR_0001s31700	POPTR_0001s31700 (11)	scaffold_1:30055038-30055330(-) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.1258.4.S1_s_at	A	A2TS	POPTR_0001s31700	POPTR_0001s31700 (11)//POPTR_0019s02630 (11)	scaffold_1:30055237-30055284(-) (11)//scaffold_19:2445325-2445372(+) (11)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.1258.6.A1_a_at	A	A1TS	POPTR_0017s07540	POPTR_0017s07540 (11)	scaffold_17:5870589-5870909(-) (11)	NA	Q9FMF5	Root phototropism protein 3	AT5G64330.1	Phototropic-responsive NPH3 family protein 	LOC_Os02g35970.1	"BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr4g120980.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.1258.8.A1_a_at	A	A2TS	POPTR_0001s08690	POPTR_0001s08690 (11)//POPTR_0003s12100 (11)	scaffold_1:6638634-6639375(-) (11)//scaffold_3:12777169-12777901(-) (11)	NA	Q5R831	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT4G23010.1	UDP-galactose transporter 2 	LOC_Os03g02670.2	"transporter family protein, putative, expressed"	Medtr7g083930.2	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12580.1.A1_at	A	A1TS	POPTR_0009s16060	POPTR_0009s16060 (11)	scaffold_9:12288120-12288628(-) (11)	NA	NA	NA	AT2G27090.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os03g20530.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g094830.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125801.1.A1_at	A	A1TS	POPTR_0008s20630	POPTR_0008s20630 (11)	scaffold_8:14390346-14390445(-) (11)	NA	A7S4N4	Probable serine incorporator	AT3G06170.1	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os03g34300.1	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.125801.1.A1_s_at	A	A1TS	POPTR_0008s20630	POPTR_0008s20630 (11)	scaffold_8:14390477-14390905(-) (11)	NA	A7S4N4	Probable serine incorporator	AT3G06170.1	Serinc-domain containing serine and sphingolipid biosynthesis protein 	LOC_Os03g34300.1	"TMS membrane protein/tumour differentially expressed protein, putative, expressed"	Medtr6g102110.1	TMS membrane protein/tumour differentially expressed protein 	NA	NA	GO:0016020|membrane
PtpAffx.125836.1.A1_at	A	A1TS	POPTR_0012s06830	POPTR_0012s06830 (11)	scaffold_12:7309113-7310339(+) (11)	NA	Q9S7P9	SNAP25 homologous protein SNAP33	AT5G61210.1	soluble N-ethylmaleimide-sensitive factor adaptor protein 33 	LOC_Os02g24080.5	"SNARE domain containing protein, putative, expressed"	Medtr5g046670.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12584.1.S1_at	A	A1TS	POPTR_0004s10580	POPTR_0004s10580 (11)	scaffold_4:9108537-9108945(-) (11)	POPTR_0017s14230 (7)	O27628	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1"	AT3G30841.1	Cofactor-independent phosphoglycerate mutase 	LOC_Os12g35040.1	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0046872|metal ion binding	NA
PtpAffx.125849.1.A1_at	A	A1TS	POPTR_0002s03110	POPTR_0002s03110 (11)	scaffold_2:1929489-1929963(-) (11)	NA	A7SWD3	UPF0559 protein v1g247787	AT1G06060.1	LisH and RanBPM domains containing protein 	LOC_Os01g56820.1	"AGAP000951-PA, putative, expressed"	Medtr1g024890.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125874.1.A1_at	A	A1TS	POPTR_0002s14550	POPTR_0002s14550 (11)	scaffold_2:10816556-10817061(+) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44370.1	"scarecrow, putative, expressed"	Medtr4g029280.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1259.1.S1_s_at	A	A1TS	POPTR_0001s24670	POPTR_0001s24670 (11)	scaffold_1:23921036-23922939(-) (11)	NA	NA	NA	AT2G28900.1	outer plastid envelope protein 16-1 	LOC_Os05g02060.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	Medtr8g137810.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.125908.1.A1_at	A	A1TS	POPTR_0007s12670	POPTR_0007s12670 (9)	scaffold_7:12922861-12923181(+) (9)	NA	Q9FLS0	F-box protein At5g07610	AT5G07610.1	F-box family protein 	LOC_Os03g56500.1	expressed protein	Medtr2g037610.2	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125938.1.A1_at	A	A1TS	POPTR_0008s10910	POPTR_0008s10910 (10)	scaffold_8:6867213-6867499(+) (10)	NA	NA	NA	AT1G26180.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710); Has 285 Blast hits to 285 proteins in 90 species: Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). "	LOC_Os02g22060.1	expressed protein	Medtr6g022930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12595.1.A1_s_at	A	A1TS	POPTR_0008s17420	POPTR_0008s17420 (11)	scaffold_8:11691831-11692391(+) (11)	NA	Q9LIR6	"Beta-amylase 1, chloroplastic"	AT3G23920.1	beta-amylase 1 	LOC_Os03g04770.1	"beta-amylase, putative, expressed"	Medtr5g013790.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.125952.1.S1_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41434054-41434413(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125952.1.S1_s_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41433090-41434282(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125954.1.S1_at	A	A1TS	POPTR_0005s11720	POPTR_0005s11720 (11)	scaffold_5:8538742-8539903(-) (11)	NA	NA	NA	AT2G17975.1	zinc finger (Ran-binding) family protein 	LOC_Os04g02000.1	"zinc finger family protein, putative, expressed"	Medtr8g090040.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.125956.1.S1_at	A	A1TS	POPTR_0018s03020	POPTR_0018s03020 (10)	scaffold_18:2695846-2696253(+) (10)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os06g40818.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125962.1.S1_at	A	A2TS	POPTR_0009s09800	POPTR_0009s09800 (10)//POPTR_0009s09830 (9)	scaffold_9:8574979-8575474(-) (10)//scaffold_9:8587749-8596674(-) (10)	POPTR_0009s09820 (7)	Q9MB73	Limonoid UDP-glucosyltransferase	AT4G15480.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os02g09510.1	"limonoid UDP-glucosyltransferase, putative, expressed"	Medtr3g067110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.125977.1.S1_at	A	A1TS	POPTR_0009s04660	POPTR_0009s04660 (11)	scaffold_9:4950028-4950840(-) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT5G58940.1	calmodulin-binding receptor-like cytoplasmic kinase 1 	LOC_Os01g63280.2	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g078150.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.126009.1.S1_at	A	A1TS	POPTR_0002s22050	POPTR_0002s22050 (11)	scaffold_2:18737519-18737801(-) (11)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.3	"OsFBX331 - F-box domain containing protein, expressed"	Medtr3g008640.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12601.1.S1_at	A	A1TS	POPTR_0006s15490	POPTR_0006s15490 (11)	scaffold_6:12901219-12901672(+) (11)	NA	NA	NA	AT2G19580.1	tetraspanin2 	LOC_Os06g37510.1	"tetraspanin family protein, putative, expressed"	Medtr4g160860.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.126031.1.S1_s_at	A	A1TS	POPTR_0006s08770	POPTR_0006s08770 (11)	scaffold_6:6454997-6456712(-) (11)	NA	Q93VV0	Probable S-acyltransferase At3g09320	AT3G09320.1	DHHC-type zinc finger family protein 	LOC_Os01g62620.1	"DHHC zinc finger domain containing protein, expressed"	Medtr1g120410.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.126034.1.S1_at	A	A1TS	POPTR_0007s10330	POPTR_0007s10330 (10)	scaffold_7:10178323-10178747(-) (11)	NA	Q9SNV9	Metal transporter Nramp3	AT2G23150.1	natural resistance-associated macrophage protein 3 	LOC_Os12g39180.1	"natural resistance-associated macrophage protein, putative, expressed"	Medtr5g016260.1	Natural resistance-associated macrophage protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.126036.1.S1_at	A	A1TS	POPTR_0001s02040	POPTR_0001s02040 (11)	scaffold_1:1537128-1537436(+) (11)	NA	Q94KU5	"Plastid lipid-associated protein 3, chloroplastic"	AT2G35490.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os10g42500.1	"PAP fibrillin family domain containing protein, expressed"	Medtr5g029500.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.12605.2.A1_at	A	A1TS	POPTR_0002s07520	POPTR_0002s07520 (11)	scaffold_2:5136434-5137959(+) (11)	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126071.1.S1_at	A	A1TS	POPTR_0011s07630	POPTR_0011s07630 (11)	scaffold_11:8466653-8466919(-) (11)	NA	P51850	Pyruvate decarboxylase isozyme 1	AT5G01320.1	Thiamine pyrophosphate dependent pyruvate decarboxylase family protein 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr2g019000.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.126071.1.S1_s_at	A	A3TS	POPTR_0004s05330	POPTR_0017s00800 (11)//POPTR_0004s05330 (11)//POPTR_0011s07630 (11)	scaffold_11:8467010-8467140(-) (11)//scaffold_17:585401-585531(-) (11)//scaffold_4:4072069-4072199(+) (11)	NA	P51850	Pyruvate decarboxylase isozyme 1	AT5G54960.1	pyruvate decarboxylase-2 	LOC_Os03g18220.1	"pyruvate decarboxylase isozyme 2, putative, expressed"	Medtr2g019000.1	Pyruvate decarboxylase/indolepyruvate decarboxylase 	NA	GO:0030976|thiamin pyrophosphate binding||GO:0000287|magnesium ion binding||GO:0003824|catalytic activity	NA
PtpAffx.126087.1.S1_at	A	A2TS	POPTR_0006s19720	POPTR_0018s11500 (11)//POPTR_0006s19720 (11)	scaffold_18:12210949-12210983(+) (11)//scaffold_6:18756671-18756705(+) (11)	NA	Q9DBG7	Signal recognition particle receptor subunit alpha	AT4G30600.1	signal recognition particle receptor alpha subunit family protein 	LOC_Os08g37444.3	"signal recognition particle receptor, putative, expressed"	Medtr8g145240.1	"AAA ATPase; Signal recognition particle receptor, alpha subunit, N-terminal "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0005047|signal recognition particle binding||GO:0005515|protein binding	GO:0005785|signal recognition particle receptor complex||GO:0071212|subsynaptic reticulum
PtpAffx.126087.1.S1_s_at	A	A2TS	POPTR_0006s19720	POPTR_0018s11500 (11)//POPTR_0006s19720 (11)	scaffold_18:12211054-12212408(+) (11)//scaffold_6:18756776-18758263(+) (11)	NA	Q9DBG7	Signal recognition particle receptor subunit alpha	AT4G30600.1	signal recognition particle receptor alpha subunit family protein 	LOC_Os08g37444.3	"signal recognition particle receptor, putative, expressed"	Medtr8g145240.1	"AAA ATPase; Signal recognition particle receptor, alpha subunit, N-terminal "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0005047|signal recognition particle binding||GO:0005515|protein binding	GO:0005785|signal recognition particle receptor complex||GO:0071212|subsynaptic reticulum
PtpAffx.126106.1.S1_at	A	A1TS	POPTR_0007s06600	POPTR_0007s06600 (11)	scaffold_7:5015145-5016776(+) (11)	NA	Q9Y295	Developmentally-regulated GTP-binding protein 1	AT4G39520.1	GTP-binding protein-related 	LOC_Os07g43470.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.126112.1.S1_s_at	A	A1TS	POPTR_0006s25970	POPTR_0006s25970 (11)	scaffold_6:24266624-24267389(-) (11)	NA	Q9LDK9	Beta-adaptin-like protein A	AT5G11490.1	adaptin family protein 	LOC_Os01g43630.2	"adaptin, putative, expressed"	Medtr3g132640.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.126125.1.S1_s_at	A	A1TS	POPTR_0004s05630	POPTR_0004s05630 (11)	scaffold_4:4393631-4394029(+) (11)	NA	Q54WA3	Peroxisomal targeting signal 2 receptor	AT1G29260.1	peroxin 7 	LOC_Os02g14790.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126134.1.S1_s_at	A	A1TS	POPTR_0002s15050	POPTR_0002s15050 (11)	scaffold_2:11156744-11158663(+) (11)	NA	Q9FVC8	"Dihydrodipicolinate synthase 2, chloroplastic"	AT2G45440.1	dihydrodipicolinate synthase 	LOC_Os04g18200.1	"dihydrodipicolinate synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016829|lyase activity	NA
PtpAffx.126167.1.S1_at	A	A1TS	POPTR_0011s11560	POPTR_0011s11560 (11)	scaffold_11:14306655-14307458(-) (11)	NA	Q8L493	"Branched-chain-amino-acid aminotransferase-like protein 3, chloroplastic"	AT5G57850.1	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os01g13690.2	"ligA, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.126173.1.S1_at	A	A1TS	POPTR_0014s08890	POPTR_0014s08890 (9)	scaffold_14:6567164-6568134(+) (9)	NA	Q9M310	F-box/kelch-repeat protein At3g61590	AT3G61590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g47050.1	"OsFBK1 - F-box domain and kelch repeat containing protein, expressed"	AC233577_25.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central AC233577.5 125790-127178 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126190.1.S1_at	A	A1TS	POPTR_0015s00670	POPTR_0015s00670 (11)	scaffold_15:397789-398441(-) (11)	NA	NA	NA	AT2G02880.1	mucin-related 	LOC_Os03g26220.1	expressed protein	Medtr5g040390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1262.1.S1_a_at	A	A1TS	POPTR_0015s00970	POPTR_0015s00970 (11)	scaffold_15:566429-566482(+) (11)	NA	A2Z3C4	"Probable 6-phosphogluconolactonase 4, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1262.1.S1_at	A	A1TS	POPTR_0015s00970	POPTR_0015s00970 (11)	scaffold_15:566011-566379(+) (11)	NA	A2Z3C4	"Probable 6-phosphogluconolactonase 4, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12620.1.A1_at	A	A1TS	POPTR_0003s06090	POPTR_0003s06090 (11)	scaffold_3:7497970-7498244(-) (11)	NA	NA	NA	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr8g119830.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126213.1.S1_s_at	A	A1TS	POPTR_0019s03410	POPTR_0019s03410 (9)	scaffold_19:3461796-3462679(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126235.1.S1_at	A	A1TS	POPTR_0012s03050	POPTR_0012s03050 (10)	scaffold_12:2454718-2455024(-) (10)	NA	P33079	Auxin-induced protein 10A5	AT2G46690.1	SAUR-like auxin-responsive protein family  	LOC_Os10g36703.1	"CPuORF40 - conserved peptide uORF-containing transcript, expressed"	Medtr3g123200.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126241.1.S1_at	A	A1TS	POPTR_0010s23590	POPTR_0010s23590 (10)	scaffold_10:20126965-20127492(+) (10)	NA	NA	NA	AT5G22930.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.1	expressed protein	Medtr4g076380.1	Protein of unknown function DUF1635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12628.1.S1_at	A	A1TS	POPTR_0010s19190	POPTR_0010s19190 (11)	scaffold_10:17181361-17182843(+) (11)	NA	Q948P6	"Ferritin-3, chloroplastic"	AT3G11050.1	ferritin 2 	LOC_Os12g01530.2	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr5g090670.1	Rubrerythrin; Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
PtpAffx.1263.1.A1_a_at	A	A1TS	POPTR_0015s06950	POPTR_0015s06950 (11)	scaffold_15:7968541-7968948(+) (11)	NA	NA	NA	AT5G08050.1	Protein of unknown function (DUF1118) 	LOC_Os12g38640.1	expressed protein	Medtr3g036520.1	Protein of unknown function DUF1118 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126304.1.A1_at	A	A1TS	POPTR_0001s32970	POPTR_0001s32970 (10)	scaffold_1:31223152-31223450(-) (10)	NA	Q9SDS7	V-type proton ATPase subunit C	AT1G12840.1	vacuolar ATP synthase subunit C (VATC) / V-ATPase C subunit / vacuolar proton pump C subunit (DET3) 	LOC_Os05g51530.2	"vacuolar ATP synthase subunit C, putative, expressed"	Medtr7g096730.1	V-ATPase subunit C 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances"""	"GO:0033180|""proton-transporting V-type ATPase, V1 domain"""
PtpAffx.126354.1.S1_s_at	A	A1TS	POPTR_0009s06580	POPTR_0009s06580 (11)	scaffold_9:6334060-6334497(+) (11)	NA	P93755	Zinc finger CCCH domain-containing protein 30	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain 	LOC_Os03g49170.3	"zinc finger family protein, putative, expressed"	Medtr7g110710.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.126359.1.S1_s_at	A	A1TS	POPTR_0010s00710	POPTR_0010s00710 (11)	scaffold_10:404241-405180(-) (11)	NA	Q0WW40	F-box/kelch-repeat protein At1g16250	AT1G16250.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126379.1.S1_at	A	A2MS	POPTR_0365s00200	POPTR_0365s00200 (11)//POPTR_0005s10250 (9)	scaffold_365:4112-4639(+) (11)//scaffold_5:7337902-7338403(-) (9)	NA	O31826	Putative acyl-CoA synthetase yngI	AT2G17650.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr8g088410.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.126394.1.S1_s_at	A	A1TS	POPTR_0004s00240	POPTR_0004s00240 (11)	scaffold_4:34695-35500(-) (11)	NA	Q9VR91	Probable E3 ubiquitin-protein ligase HERC2	AT5G60870.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os09g38755.1	"E3 ubiquitin-protein ligase HERC2, putative, expressed"	Medtr7g047420.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12640.1.A1_at	A	A1TS	POPTR_0001s36630	POPTR_0001s36630 (10)	scaffold_1:35312239-35313294(+) (10)	NA	Q5E9R3	EH domain-containing protein 1	AT3G20290.2	EPS15 homology domain 1 	LOC_Os06g47330.1	"dynamin family protein, putative, expressed"	Medtr5g101130.1	EPS15 homology (EH); Dynamin 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.126410.1.S1_s_at	A	A1TS	POPTR_0006s04770	POPTR_0006s04770 (11)	scaffold_6:3306668-3307037(+) (11)	NA	O22230	Heat stress transcription factor B-3	AT2G41690.1	heat shock transcription factor B3 	LOC_Os04g48030.1	"heat stress transcription factor B-1, putative, expressed"	Medtr7g108580.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.12643.1.S1_at	A	A1TS	POPTR_0012s03150	POPTR_0012s03150 (11)	scaffold_12:2504828-2505314(+) (11)	NA	Q84WW2	"Probable 6-phosphogluconolactonase 5, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126445.1.S1_s_at	A	A1TS	POPTR_0006s23500	POPTR_0006s23500 (11)	scaffold_6:22210921-22211468(+) (11)	NA	Q67ZE1	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2	AT2G26260.1	3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 	LOC_Os03g29170.1	"sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0044237|cellular metabolic process||GO:0006694|steroid biosynthetic process	GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity||GO:0050662|coenzyme binding	GO:0005783|endoplasmic reticulum
PtpAffx.126457.1.S1_at	A	A1TS	POPTR_0015s10860	POPTR_0015s10860 (11)	scaffold_15:11646675-11647223(+) (11)	NA	NA	NA	AT3G48550.1	BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g30380.1	expressed protein	Medtr8g108940.1	"ATIDD15/SGR5 ; nucleic acid binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126460.1.S1_s_at	A	A1TS	POPTR_0002s06070	POPTR_0002s06070 (11)	scaffold_2:4044659-4044963(-) (11)	NA	P08965	Meiosis protein mei2	AT1G29400.2	MEI2-like protein 5 	LOC_Os02g48790.2	"AML1, putative, expressed"	Medtr2g056620.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.126469.1.S1_at	A	A1TS	POPTR_0004s09020	POPTR_0004s09020 (11)	scaffold_4:7578841-7580017(+) (11)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126487.1.S1_at	A	A1TS	POPTR_0005s09200	POPTR_0005s09200 (11)	scaffold_5:6428639-6428820(+) (11)	NA	P32746	"Dihydroorotate dehydrogenase, mitochondrial"	AT5G23300.1	pyrimidine d 	LOC_Os04g57950.1	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr1g143810.1	Dihydroorotate dehydrogenase 2 	GO:0044281|small molecule metabolic process||GO:0006222|UMP biosynthetic process||GO:0055114|oxidation reduction	GO:0004152|dihydroorotate dehydrogenase activity	NA
PtpAffx.126487.1.S1_s_at	A	A1TS	POPTR_0005s09200	POPTR_0005s09200 (11)	scaffold_5:6428808-6430125(+) (11)	NA	P32746	"Dihydroorotate dehydrogenase, mitochondrial"	AT5G23300.1	pyrimidine d 	LOC_Os04g57950.1	"dihydroorotate dihydrogenase protein, putative, expressed"	Medtr1g143810.1	Dihydroorotate dehydrogenase 2 	GO:0044281|small molecule metabolic process||GO:0006222|UMP biosynthetic process||GO:0055114|oxidation reduction	GO:0004152|dihydroorotate dehydrogenase activity	NA
PtpAffx.126496.1.S1_at	A	A1TS	POPTR_0008s19830	POPTR_0008s19830 (11)	scaffold_8:13685436-13685508(-) (11)	NA	Q944S1	DEAD-box ATP-dependent RNA helicase 22	AT1G59990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os09g21520.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g074020.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.126496.1.S1_s_at	A	A1TS	POPTR_0008s19830	POPTR_0008s19830 (11)	scaffold_8:13684729-13685428(-) (11)	NA	Q944S1	DEAD-box ATP-dependent RNA helicase 22	AT1G59990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os09g21520.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g074020.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.126513.1.S1_s_at	A	A1TS	POPTR_0014s07680	POPTR_0014s07680 (11)	scaffold_14:5751047-5752056(+) (11)	NA	Q9LD43	"Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic"	AT2G38040.2	acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126529.1.S1_at	A	A1TS	POPTR_0014s13180	POPTR_0014s13180 (11)	scaffold_14:9707273-9707331(+) (11)	NA	O24467	LEC14B homolog	AT4G03020.2	transducin family protein / WD-40 repeat family protein 	LOC_Os05g33710.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g111040.1	"LEC14B homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126529.1.S1_s_at	A	A1TS	POPTR_0014s13180	POPTR_0014s13180 (11)	scaffold_14:9707899-9708173(+) (11)	NA	O24467	LEC14B homolog	AT4G03020.2	transducin family protein / WD-40 repeat family protein 	LOC_Os05g33710.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g111040.1	"LEC14B homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126565.1.S1_at	A	A1TS	POPTR_0008s00480	POPTR_0008s00480 (11)	scaffold_8:193411-195824(-) (11)	NA	Q8GWH5	Reticulon-like protein B22	AT1G78895.1	Reticulon family protein 	LOC_Os08g12850.1	"pentatricopeptide, putative, expressed"	NA	NA	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.126566.1.S1_at	A	A1TS	POPTR_0002s14690	POPTR_0002s14690 (11)	scaffold_2:10915229-10915671(-) (11)	NA	NA	NA	AT2G45260.1	Plant protein of unknown function (DUF641) 	LOC_Os10g23220.2	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126599.1.A1_s_at	A	A1TS	POPTR_0004s17020	POPTR_0004s17020 (11)	scaffold_4:17370719-17371234(-) (11)	NA	Q43075	Arginine decarboxylase	AT4G34710.2	arginine decarboxylase 2 	LOC_Os06g04070.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr4g097390.1	Arginine decarboxylase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.126622.1.S1_s_at	A	A1TS	POPTR_0018s13780	POPTR_0018s13780 (11)	scaffold_18:14053328-14053711(+) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT3G23750.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr3g104610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.126626.1.S1_at	A	A1TS	POPTR_0008s09960	POPTR_0008s09960 (10)	scaffold_8:6167120-6167963(+) (10)	NA	Q0VCZ3	YTH domain family protein 2	AT1G48110.2	evolutionarily conserved C-terminal region 7 	LOC_Os03g20180.2	"ECT protein, putative, expressed"	Medtr8g134440.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126635.1.S1_at	A	A1TS	POPTR_0013s09350	POPTR_0013s09350 (11)	scaffold_13:9032036-9032455(-) (11)	NA	Q6S4P4	Transcription factor RF2b	AT2G40620.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os03g21800.2	"bZIP transcription factor family protein, putative, expressed"	Medtr5g083200.1	Basic leucine zipper 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.126640.1.S1_s_at	A	A1TS	POPTR_0016s06760	POPTR_0016s06760 (11)	scaffold_16:4570797-4572357(-) (11)	NA	Q9XFB0	Putative axial regulator YABBY 2	AT1G08465.1	Plant-specific transcription factor YABBY family protein 	LOC_Os07g06620.1	"YABBY domain containing protein, putative, expressed"	Medtr2g104680.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126640.2.S1_at	A	A1MS	POPTR_0016s06760	POPTR_0016s06760 (11)	scaffold_16:4573802-4574095(-) (11)	NA	Q9XFB0	Putative axial regulator YABBY 2	AT1G08465.1	Plant-specific transcription factor YABBY family protein 	LOC_Os07g06620.1	"YABBY domain containing protein, putative, expressed"	Medtr2g104680.1	YABBY protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126646.1.S1_at	A	A1TS	POPTR_0006s15100	POPTR_0006s15100 (11)	scaffold_6:12554440-12555061(+) (11)	NA	Q9ZUP2	"DNA repair protein recA homolog 3, mitochondrial"	AT2G19490.1	recA DNA recombination family protein 	LOC_Os01g67510.1	"recA protein, putative, expressed"	Medtr2g046210.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126648.1.S1_at	A	A1TS	POPTR_0005s06520	POPTR_0005s06520 (11)	scaffold_5:4357003-4358986(-) (11)	NA	Q941D6	Histone deacetylase 14	AT4G33470.1	histone deacetylase 14 	LOC_Os12g08220.1	"histone deacetylase, putative, expressed"	Medtr4g142920.1	Histone deacetylase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126653.1.S1_s_at	A	A1TS	POPTR_0010s26210	POPTR_0010s26210 (11)	scaffold_10:21528980-21529416(-) (11)	POPTR_0008s00270 (6)	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.126669.1.S1_at	A	A1TS	POPTR_0016s14420	POPTR_0016s14420 (11)	scaffold_16:13634637-13635454(+) (11)	NA	NA	NA	AT2G38550.1	Transmembrane proteins 14C 	LOC_Os01g60650.1	"non-green plastid inner envelope membrane protein, putative, expressed"	Medtr7g080440.1	Protein of unknown function UPF0136 	NA	NA	GO:0016020|membrane
PtpAffx.126679.1.S1_at	A	A1TS	POPTR_0007s14410	POPTR_0007s14410 (9)	scaffold_7:14194780-14196548(-) (10)	NA	B0XN12	"Probable glucan 1,3-beta-glucosidase A"	NA	NA	LOC_Os08g37750.1	"cellulase, putative, expressed"	Medtr3g102270.1	"Glycoside hydrolase, family 5; Actin-crosslinking proteins "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12669.1.S1_at	A	A2TS	POPTR_0016s02710	POPTR_0016s02710 (9)//POPTR_1436s00200 (9)	scaffold_1436:2635-3094(+) (9)//scaffold_16:1344481-1345060(+) (9)//scaffold_16:1366271-1366855(+) (9)	POPTR_0016s02730 (7)//POPTR_0016s02680 (7)	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os01g58830.1	"transposon protein, putative, unclassified"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0046983|protein dimerization activity	NA
PtpAffx.126703.1.S1_at	A	A1TS	POPTR_0005s21650	POPTR_0005s21650 (10)	scaffold_5:20756747-20759062(-) (10)	NA	Q99JH1	Alba-like protein C9orf23 homolog	AT1G76010.1	Alba DNA/RNA-binding protein 	LOC_Os09g37006.2	"protein of unknown function domain containing protein, expressed"	Medtr3g144390.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.126703.1.S1_s_at	A	A2TS	POPTR_0002s06670	POPTR_0002s06670 (11)//POPTR_0005s21650 (11)	scaffold_2:4485165-4486415(+) (10)//scaffold_5:20757534-20759003(-) (11)	NA	Q99JH1	Alba-like protein C9orf23 homolog	AT1G76010.1	Alba DNA/RNA-binding protein 	LOC_Os09g37006.2	"protein of unknown function domain containing protein, expressed"	Medtr3g144390.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.126720.1.S1_s_at	A	A2TS	POPTR_0002s07820	POPTR_0002s07820 (11)//POPTR_0005s20540 (11)	scaffold_2:5366579-5367277(-) (11)//scaffold_5:19595169-19595828(+) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT1G77280.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os11g08950.1	"protein kinase family protein, putative, expressed"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.126732.1.S1_at	A	A1TS	POPTR_0002s10420	POPTR_0002s10420 (11)	scaffold_2:7508360-7508893(+) (11)	NA	B2J5F1	Glucose-6-phosphate isomerase	AT4G24620.1	phosphoglucose isomerase 1 	LOC_Os09g29070.1	"glucose-6-phosphate isomerase, putative, expressed"	Medtr5g074950.1	Phosphoglucose isomerase (PGI) 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006096|glycolysis||GO:0006094|gluconeogenesis	GO:0004347|glucose-6-phosphate isomerase activity	NA
PtpAffx.12675.2.A1_a_at	A	A1TS	POPTR_0007s00260	POPTR_0007s00260 (11)	scaffold_7:54599-54726(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.2.A1_at	A	A1TS	POPTR_0007s00260	POPTR_0007s00260 (11)	scaffold_7:54536-55005(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.3.A1_a_at	A	A1TS	POPTR_0015s04140	POPTR_0015s04140 (11)	scaffold_15:4166076-4166189(+) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.3.A1_s_at	A	A1TS	POPTR_0015s04140	POPTR_0015s04140 (11)	scaffold_15:4165669-4165873(+) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.4.A1_s_at	A	A1TS	POPTR_0006s12450	POPTR_0006s12450 (11)	scaffold_6:9597551-9598253(-) (11)	NA	NA	NA	AT5G03460.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g57766.1	expressed protein	Medtr7g123980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12675.9.A1_a_at	A	A1TS	POPTR_0004s19900	POPTR_0004s19900 (11)	scaffold_4:19564866-19565178(+) (11)	NA	Q9FK81	Uncharacterized protein At5g22580	AT5G22580.1	Stress responsive A/B Barrel Domain 	LOC_Os11g05290.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12676.1.S1_at	A	A1TS	POPTR_0006s18790	POPTR_0006s18790 (10)	scaffold_6:17450665-17451110(-) (10)	NA	NA	NA	AT5G57685.1	glutamine dumper 3 	LOC_Os08g34700.1	"GDU1, putative, expressed"	Medtr8g128110.1	"ATGDU4 {Arabidopsis, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12677.2.A1_at	A	A2TS	POPTR_0005s22200	POPTR_0005s22200 (11)//POPTR_0005s22210 (11)	scaffold_5:21165830-21165871(+) (11)//scaffold_5:21183369-21183410(+) (11)	NA	Q9SZ83	Uncharacterized oxidoreductase At4g09670	AT4G09670.1	Oxidoreductase family protein 	LOC_Os10g26400.2	"uncharacterized oxidoreductase, putative, expressed"	Medtr3g087060.1	"Oxidoreductase, N-terminal "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.126778.1.A1_at	A	A1TS	POPTR_0001s16210	POPTR_0001s16210 (11)	scaffold_1:13027907-13028414(+) (11)	NA	Q9XF63	RING-H2 finger protein ATL3	AT1G72310.1	RING/U-box superfamily protein 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126781.1.S1_at	A	A1TS	POPTR_0006s24150	POPTR_0006s24150 (11)	scaffold_6:22819353-22820793(-) (11)	NA	Q5NVK5	Geranylgeranyl transferase type-2 subunit alpha	AT4G24490.2	RAB geranylgeranyl transferase alpha subunit 1 	LOC_Os06g46380.1	"rab geranylgeranyl transferase like protein, putative, expressed"	Medtr3g149650.1	Protein prenyltransferase 	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity||GO:0005515|protein binding	NA
PtpAffx.126781.1.S1_s_at	A	A1TS	POPTR_0006s24150	POPTR_0006s24150 (11)	scaffold_6:22818660-22819332(-) (11)	NA	Q5NVK5	Geranylgeranyl transferase type-2 subunit alpha	AT4G24490.2	RAB geranylgeranyl transferase alpha subunit 1 	LOC_Os06g46380.1	"rab geranylgeranyl transferase like protein, putative, expressed"	Medtr3g149650.1	Protein prenyltransferase 	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity||GO:0005515|protein binding	NA
PtpAffx.12680.1.S1_at	A	A1TS	POPTR_0004s16660	POPTR_0004s16660 (10)	scaffold_4:17055558-17056070(-) (10)	NA	O65685	BEL1-like homeodomain protein 6	AT4G34610.2	BEL1-like homeodomain 6 	LOC_Os12g43950.4	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.126807.1.S1_at	A	A1TS	POPTR_0005s20890	POPTR_0005s20890 (11)	scaffold_5:20020901-20021138(+) (11)	NA	Q9SDQ3	Scarecrow-like protein 1	AT1G21450.1	SCARECROW-like 1 	LOC_Os01g65900.1	"chitin-inducible gibberellin-responsive protein, putative, expressed"	Medtr5g105180.1	"Chitin-inducible gibberellin-responsive protein 2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12684.1.S1_at	A	A1TS	POPTR_0004s00550	POPTR_0004s00550 (11)	scaffold_4:203233-203691(+) (11)	NA	Q41141	Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta	AT1G12000.1	Phosphofructokinase family protein 	LOC_Os06g13810.1	"pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta, putative, expressed"	Medtr8g147360.1	Pyrophosphate-dependent phosphofructokinase PfpB 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126845.1.A1_at	A	A1TS	POPTR_0005s05080	POPTR_0005s05080 (10)	scaffold_5:3378201-3378638(-) (10)	NA	P73068	Rubredoxin	AT1G54500.1	Rubredoxin-like superfamily protein 	LOC_Os08g23410.1	"rubredoxin family protein, putative, expressed"	Medtr7g140460.1	Rubredoxin 	NA	GO:0046872|metal ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.126848.1.A1_s_at	A	A1TS	POPTR_0005s19290	POPTR_0005s19290 (11)	scaffold_5:18011448-18012712(-) (11)	NA	Q9FJX0	Peptidyl-prolyl cis-trans isomerase-like 2	AT5G67530.1	plant U-box 49 	LOC_Os03g10400.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.126854.1.A1_at	A	A1MS	POPTR_0008s13160	POPTR_0008s13160 (11)	scaffold_8:8606605-8607123(+) (11)	NA	O65472	Putative cysteine-rich receptor-like protein kinase 12	AT1G70740.1	Protein kinase superfamily protein 	LOC_Os09g24330.1	"TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr1g035090.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.126891.1.A1_at	A	A1TS	POPTR_0002s13200	POPTR_0002s13200 (11)	scaffold_2:9830568-9831087(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1269.1.A1_a_at	A	A1TS	POPTR_0013s05790	POPTR_0013s05790 (11)	scaffold_13:4176747-4176852(-) (11)	NA	O64654	"Thioredoxin-like 1-1, chloroplastic"	AT1G08570.1	atypical CYS  HIS rich thioredoxin 4 	LOC_Os03g21000.1	"thioredoxin, putative, expressed"	Medtr7g100190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.1269.1.A1_x_at	A	A1TS	POPTR_0013s05790	POPTR_0013s05790 (11)	scaffold_13:4176673-4177116(-) (11)	NA	O64654	"Thioredoxin-like 1-1, chloroplastic"	AT1G08570.1	atypical CYS  HIS rich thioredoxin 4 	LOC_Os03g21000.1	"thioredoxin, putative, expressed"	Medtr7g100190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.1269.2.S1_at	A	A1TS	POPTR_0014s07470	POPTR_0014s07470 (11)	scaffold_14:5622248-5622596(-) (11)	NA	Q58FX0	BON1-associated protein 2	AT2G45760.1	BON association protein 2 	LOC_Os09g35780.1	"BAP2, putative, expressed"	Medtr7g083600.1	"C2 calcium/lipid-binding region, CaLB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1269.3.S1_at	A	A1TS	POPTR_0002s15670	POPTR_0002s15670 (11)	scaffold_2:11710203-11710695(-) (11)	NA	Q58FX0	BON1-associated protein 2	AT2G45760.1	BON association protein 2 	LOC_Os09g35780.1	"BAP2, putative, expressed"	Medtr7g083600.1	"C2 calcium/lipid-binding region, CaLB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126919.1.A1_at	A	A1TS	POPTR_0002s24080	POPTR_0002s24080 (9)	scaffold_2:21529047-21529079(-) (9)	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT3G25480.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g66600.2	"rhodanese-like, putative, expressed"	Medtr7g092420.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126919.1.A1_s_at	A	A1TS	POPTR_0002s24080	POPTR_0002s24080 (11)	scaffold_2:21528759-21529222(-) (11)	NA	Q9M158	"Uncharacterized protein At4g01050, chloroplastic"	AT3G25480.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os01g66600.2	"rhodanese-like, putative, expressed"	Medtr7g092420.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126945.1.A1_s_at	A	A1TS	POPTR_0016s06000	POPTR_0016s06000 (11)	scaffold_16:3924131-3924377(-) (11)	NA	Q39147	DNA-3-methyladenine glycosylase	AT3G12040.1	DNA-3-methyladenine glycosylase (MAG) 	LOC_Os02g53430.1	"DNA-3-methyladenine glycosylase, putative, expressed"	Medtr7g112240.1	Methylpurine-DNA glycosylase (MPG) 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003905|alkylbase DNA N-glycosylase activity	NA
PtpAffx.126947.1.A1_at	A	A1MS	POPTR_0001s35060	POPTR_0001s35060 (9)	scaffold_1:33331656-33332152(-) (9)	NA	Q9FNE1	Cysteine-rich receptor-like protein kinase 42	AT5G40380.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 42 	LOC_Os01g36790.1	"TKL_IRAK_DUF26-lf.2 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g035020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.126959.1.A1_at	A	A1TS	POPTR_0005s07570	POPTR_0005s07570 (11)	scaffold_5:5165270-5165730(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12697.1.S1_at	A	A1TS	POPTR_0002s24620	POPTR_0002s24620 (9)	scaffold_2:21942797-21944458(+) (9)	NA	NA	NA	AT3G07170.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g30910.2	"SAM domain family protein, expressed"	Medtr5g036920.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126994.1.A1_at	A	A1TS	POPTR_0002s20790	POPTR_0002s20790 (11)	scaffold_2:16911767-16912192(+) (11)	NA	O82243	Putative indole-3-acetic acid-amido synthetase GH3.9	AT2G47750.1	putative indole-3-acetic acid-amido synthetase GH3.9 	LOC_Os07g47490.2	"OsGH3.11 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.126996.1.A1_at	A	A1TS	POPTR_0009s08460	POPTR_0009s08460 (11)	scaffold_9:7743648-7744547(+) (11)	NA	A8WGF7	Protein spinster homolog 1	AT5G64500.1	Major facilitator superfamily protein 	LOC_Os04g44430.1	"transporter, major facilitator family, putative, expressed"	Medtr4g121900.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1270.1.A1_s_at	A	A2TS	POPTR_0019s03110	POPTR_0078s00210 (11)//POPTR_0019s03110 (11)	scaffold_19:3122731-3123165(-) (11)//scaffold_78:31711-32145(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os08g37210.1	"patatin, putative, expressed"	Medtr5g017690.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.127010.1.A1_a_at	A	A1TS	POPTR_0004s07070	POPTR_0004s07070 (11)	scaffold_4:5881388-5881785(+) (11)	NA	Q8VHE0	Translocation protein SEC63 homolog	AT1G79940.3	DnaJ / Sec63 Brl domains-containing protein 	LOC_Os04g24180.2	"heat shock protein binding protein, putative, expressed"	Medtr2g052130.1	"Heat shock protein DnaJ, N-terminal; Sec63 "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.127029.2.A1_s_at	A	A2TS	POPTR_0012s09890	POPTR_0012s09890 (11)//POPTR_0015s10670 (11)	scaffold_12:10784658-10784935(-) (11)//scaffold_15:11530659-11530890(-) (11)	NA	NA	NA	AT5G63460.1	SAP domain-containing protein 	LOC_Os12g25640.1	"SAP domain containing protein, expressed"	Medtr8g109290.1	DNA-binding SAP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.127029.3.A1_a_at	A	A1TS	POPTR_0012s09890	POPTR_0012s09890 (11)	scaffold_12:10783931-10785336(-) (11)	NA	NA	NA	AT5G63460.1	SAP domain-containing protein 	LOC_Os12g25640.1	"SAP domain containing protein, expressed"	Medtr8g109290.1	DNA-binding SAP 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.127044.1.A1_at	A	A1TS	POPTR_0009s15050	POPTR_0009s15050 (11)	scaffold_9:11666252-11666694(-) (11)	NA	NA	NA	AT2G27770.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr4g073260.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127056.1.A1_at	A	A1TS	POPTR_0008s13460	POPTR_0008s13460 (11)	scaffold_8:8860475-8860602(-) (11)	NA	Q9C9W9	Adagio protein 3	AT1G68050.1	"flavin-binding, kelch repeat, f box 1 "	LOC_Os11g34460.1	"OsFBO10 - F-box and other domain containing protein, expressed"	Medtr4g156890.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127059.1.A1_at	A	A1TS	POPTR_0001s05280	POPTR_0001s05280 (11)	scaffold_1:4054006-4054211(+) (11)	NA	Q5Z9Z0	Beta-glucosidase 24	AT5G44640.1	beta glucosidase 13 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr8g146400.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.127060.1.A1_a_at	A	A1TS	POPTR_0004s06730	POPTR_0004s06730 (11)	scaffold_4:5386843-5386952(+) (11)	NA	NA	NA	AT1G73210.1	Protein of unknown function (DUF789) 	LOC_Os06g51330.1	expressed protein	Medtr6g089670.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127060.1.A1_at	A	A1TS	POPTR_0004s06730	POPTR_0004s06730 (11)	scaffold_4:5386540-5386716(+) (11)	NA	NA	NA	AT1G73210.1	Protein of unknown function (DUF789) 	LOC_Os06g51330.1	expressed protein	Medtr6g089670.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12708.1.A1_at	A	A1TS	POPTR_0014s11350	POPTR_0014s11350 (10)	scaffold_14:8445561-8445937(-) (10)	NA	O22900	Probable WRKY transcription factor 23	AT2G47260.1	WRKY DNA-binding protein 23 	LOC_Os07g02060.1	"OsWRKY29 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr1g106500.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.127094.1.A1_at	A	A1TS	POPTR_0001s25830	POPTR_0001s25830 (11)	scaffold_1:24906433-24906987(-) (11)	NA	Q39253	Vacuolar cation/proton exchanger 1	AT2G38170.1	cation exchanger 1 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr5g078800.1	Calcium/proton exchanger superfamily 	NA	NA	GO:0016021|integral to membrane
PtpAffx.127096.1.A1_at	A	A1TS	POPTR_0009s15270	POPTR_0009s15270 (11)	scaffold_9:11853639-11854077(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT3G44820.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	AC157372_1.1	BTB/POZ; NPH3 AC157372.2 9592-12375 E EGN_Mt090430 200	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.127102.1.A1_at	A	A1TS	POPTR_0017s03030	POPTR_0017s03030 (11)	scaffold_17:2194781-2194955(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127102.1.A1_s_at	A	A1TS	POPTR_0017s03030	POPTR_0017s03030 (11)	scaffold_17:2194619-2194784(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127113.1.A1_at	A	A1TS	POPTR_0018s11760	POPTR_0018s11760 (10)	scaffold_18:12410872-12411205(+) (10)	NA	Q00IB6	RNA polymerase II C-terminal domain phosphatase-like 4	AT5G58003.1	C-terminal domain phosphatase-like 4 	LOC_Os05g32430.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g055870.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.12712.1.S1_at	A	A1TS	POPTR_0006s09080	POPTR_0006s09080 (11)	scaffold_6:6706249-6707789(+) (11)	NA	P50165	Tropinone reductase homolog	AT2G29150.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr8g147520.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.127135.1.A1_at	A	A1TS	POPTR_0008s13520	POPTR_0008s13520 (11)	scaffold_8:8901031-8901267(+) (11)	NA	Q0DXS3	Probable RNA-dependent RNA polymerase 1	AT1G14790.1	RNA-dependent RNA polymerase 1 	LOC_Os02g50330.1	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125360.1	RNA-binding region RNP-1 (RNA recognition motif); RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127139.1.S1_at	A	A1TS	POPTR_0015s12030	POPTR_0015s12030 (10)	scaffold_15:12469817-12469899(+) (10)	NA	Q8BMD8	Calcium-binding mitochondrial carrier protein SCaMC-1	AT5G51050.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40200.2	"calcium-binding mitochondrial carrier CBG00135, putative, expressed"	Medtr3g151470.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127139.1.S1_s_at	A	A1TS	POPTR_0015s12030	POPTR_0015s12030 (11)	scaffold_15:12469431-12469692(+) (11)	NA	Q8BMD8	Calcium-binding mitochondrial carrier protein SCaMC-1	AT5G51050.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40200.2	"calcium-binding mitochondrial carrier CBG00135, putative, expressed"	Medtr3g151470.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127146.1.A1_at	A	A1TS	POPTR_0001s44020	POPTR_0001s44020 (11)	scaffold_1:44493783-44494285(+) (11)	NA	NA	NA	AT5G54540.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os08g08190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12715.1.A1_at	A	A1TS	POPTR_0017s07520	POPTR_0017s07520 (11)	scaffold_17:5855259-5856056(+) (11)	NA	Q9FY69	Transcription factor bHLH143	AT5G09460.1	sequence-specific DNA binding transcription factors;transcription regulators 	LOC_Os03g27390.2	"CPuORF35 - conserved peptide uORF-containing transcript, expressed"	Medtr2g009410.1	"transcription factor/ transcription regulator, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127154.1.S1_at	A	A1TS	POPTR_0001s34510	POPTR_0001s34510 (11)	scaffold_1:32629049-32629401(+) (11)	NA	Q9SVV6	Probable calcium-activated outward-rectifying potassium channel 6	AT4G18160.1	Ca2+ activated outward rectifying K+ channel 6 	LOC_Os09g12790.1	"potassium channel protein, putative, expressed"	Medtr7g134030.1	Ion transport 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127155.1.A1_s_at	A	A1TS	POPTR_0010s10440	POPTR_0010s10440 (11)	scaffold_10:10947187-10947310(-) (11)	NA	Q8W4I4	Potassium transporter 6	AT1G70300.1	K+ uptake permease 6 	LOC_Os06g42030.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.127197.1.A1_at	A	A1TS	POPTR_0003s21680	POPTR_0003s21680 (11)	scaffold_3:19734260-19734588(-) (11)	NA	NA	NA	AT5G19900.1	"PRLI-interacting factor, putative "	LOC_Os02g58570.1	"PRLI-interacting factor A, putative, expressed"	Medtr1g146630.1	"PRLI-interacting factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127210.1.A1_at	A	A1TS	POPTR_0018s11670	POPTR_0018s11670 (11)	scaffold_18:12316287-12316799(-) (11)	POPTR_0006s19880 (6)	C0LGK9	Probable LRR receptor-like serine/threonine-protein kinase At2g24230	AT2G24230.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g17410.1	"BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed"	Medtr8g145450.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.127230.1.A1_at	A	A1TS	POPTR_0008s05240	POPTR_0008s05240 (10)	scaffold_8:3031808-3032879(-) (10)	NA	O95163	Elongator complex protein 1	AT5G13680.1	IKI3 family protein 	LOC_Os07g37640.1	"IKI3 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127241.1.A1_at	A	A1TS	POPTR_0019s10120	POPTR_0019s10120 (10)	scaffold_19:11697647-11698137(-) (10)	NA	Q6NZC7	SEC23-interacting protein	AT1G31480.1	shoot gravitropism 2 (SGR2) 	LOC_Os08g01920.1	"SGR2, putative, expressed"	Medtr5g087840.1	"SGR2, putative "	NA	GO:0046872|metal ion binding	NA
PtpAffx.127246.1.A1_at	A	A1TA	POPTR_0013s07640	POPTR_0013s07640 (10)	scaffold_13:6469919-6471842(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127248.1.A1_at	A	A1MS	POPTR_0006s25530	POPTR_0006s25530 (11)	scaffold_6:23925450-23925669(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G25820.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	Medtr4g159530.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.127252.1.A1_at	A	A1TS	POPTR_0012s04870	POPTR_0012s04870 (9)	scaffold_12:4288247-4288513(+) (9)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT3G18210.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.12726.1.S1_at	A	A1TS	POPTR_0006s24820	POPTR_0006s24820 (11)	scaffold_6:23351281-23351954(-) (11)	NA	P42044	"Ferrochelatase-2, chloroplastic"	AT5G26030.2	ferrochelatase 1 	LOC_Os09g12560.2	"ferrochelatase-2, chloroplast precursor, putative, expressed"	Medtr3g140120.1	Ferrochelatase 	GO:0006783|heme biosynthetic process	GO:0004325|ferrochelatase activity	NA
PtpAffx.127276.1.A1_at	A	A1TS	POPTR_0013s05320	POPTR_0013s05320 (11)	scaffold_13:3810329-3810699(+) (11)	NA	O00410	Importin-5	AT5G19820.1	ARM repeat superfamily protein 	LOC_Os07g38760.1	"HEAT repeat family protein, putative, expressed"	Medtr4g134340.1	HEAT 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.127286.2.A1_at	A	A1TS	POPTR_0010s16470	POPTR_0010s16470 (9)	scaffold_10:15415331-15415692(-) (9)	NA	Q9LMX8	Probable 6-phosphogluconolactonase 1	AT1G13700.1	6-phosphogluconolactonase 1 	LOC_Os07g41280.3	"6-phosphogluconolactonase, putative, expressed"	Medtr5g047620.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127289.1.A1_at	A	A1TS	POPTR_0006s22560	POPTR_0006s22560 (10)	scaffold_6:21541079-21541585(+) (10)	NA	Q9LPV9	WD repeat-containing protein LWD1	AT1G12910.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g32430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g099620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1273.1.S1_at	A	A1TS	POPTR_0007s10140	POPTR_0007s10140 (11)	scaffold_7:9863906-9865812(+) (11)	NA	P51273	Uncharacterized protein ycf36	AT5G67370.1	Protein of unknown function (DUF1230) 	LOC_Os03g32490.1	"DUF1230 domain containing protein, expressed"	Medtr5g016100.1	Protein of unknown function DUF1230 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1273.2.A1_at	A	A1MA	POPTR_0007s10140	POPTR_0007s10140 (11)	scaffold_7:9865336-9865872(-) (11)	NA	P51273	Uncharacterized protein ycf36	AT5G67370.1	Protein of unknown function (DUF1230) 	LOC_Os03g32490.1	"DUF1230 domain containing protein, expressed"	Medtr5g016100.1	Protein of unknown function DUF1230 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12730.1.S1_at	A	A1TS	POPTR_0005s07450	POPTR_0005s07450 (9)	scaffold_5:5092845-5093166(-) (9)	NA	P29976	"Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic"	AT4G39980.1	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 	LOC_Os03g27230.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003849|3-deoxy-7-phosphoheptulonate synthase activity	NA
PtpAffx.127300.1.A1_at	A	A1TS	POPTR_0001s10060	POPTR_0001s10060 (11)	scaffold_1:7787052-7787405(-) (11)	NA	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.127303.1.A1_at	A	A1TS	POPTR_0007s09490	POPTR_0007s09490 (11)	scaffold_7:8886882-8887138(-) (11)	NA	O22567	"Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic"	AT4G15560.1	Deoxyxylulose-5-phosphate synthase 	LOC_Os07g09190.1	"transketolase, putative, expressed"	Medtr8g079280.1	"Transketolase, C-terminal-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.127311.1.A1_at	A	A1TS	POPTR_0019s07160	POPTR_0019s07160 (11)	scaffold_19:7885428-7885818(-) (11)	NA	Q84Y01	Inositol-tetrakisphosphate 1-kinase 1	AT5G16760.1	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os10g42550.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.127327.1.A1_s_at	A	A1TS	POPTR_0010s24570	POPTR_0010s24570 (11)	scaffold_10:20720856-20721483(-) (11)	NA	NA	NA	AT4G18590.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g14980.2	"RPA3 - Putative single-stranded DNA binding complex subunit 3, expressed"	Medtr7g127630.1	Replication factor A protein 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12733.1.S1_at	A	A1TS	POPTR_0010s07030	POPTR_0010s07030 (11)	scaffold_10:8269412-8270975(-) (11)	NA	Q7Z2K6	Endoplasmic reticulum metallopeptidase 1	AT1G67420.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os07g19530.1	"peptidase, putative, expressed"	Medtr1g120840.1	ArgE/dapE/ACY1/CPG2/yscS; Peptidase M28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.127335.1.A1_at	A	A1MS	POPTR_0014s10550	POPTR_0014s10550 (10)	scaffold_14:7858967-7859289(+) (10)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127337.1.A1_at	A	A1MS	POPTR_0005s08630	POPTR_0005s08630 (9)	scaffold_5:5995862-5996061(-) (9)	NA	NA	NA	AT2G21960.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 	LOC_Os04g54640.1	"peptidase, cysteine peptidase active site, putative, expressed"	Medtr2g077520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127346.1.A1_at	A	A1TS	POPTR_0009s08360	POPTR_0009s08360 (9)	scaffold_9:7677014-7677721(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127355.1.A1_at	A	A1TS	POPTR_0016s12300	POPTR_0016s12300 (9)	scaffold_16:11643959-11644248(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127364.1.A1_s_at	A	A1TS	POPTR_0007s09500	POPTR_0007s09500 (11)	scaffold_7:8896440-8896979(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr5g032910.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.127364.3.A1_a_at	A	A1TS	POPTR_0005s19120	POPTR_0005s19120 (11)	scaffold_5:17726536-17728362(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr5g032910.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.12738.2.S1_a_at	A	A1TS	POPTR_0013s09990	POPTR_0013s09990 (11)	scaffold_13:9967731-9968761(-) (11)	NA	P54120	Protein AIG1	AT1G33970.5	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g35130.2	"AIG1, putative, expressed"	Medtr4g033020.1	AIG1 	NA	GO:0005525|GTP binding	NA
PtpAffx.127398.1.A1_at	A	A1TS	POPTR_0008s05110	POPTR_0008s05110 (11)	scaffold_8:2965543-2965785(+) (11)	NA	NA	NA	AT2G28710.1	C2H2-type zinc finger family protein 	LOC_Os03g17150.1	"ZOS3-09 - C2H2 zinc finger protein, expressed"	Medtr7g024970.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.12741.1.A1_a_at	A	A1TS	POPTR_0005s15960	POPTR_0005s15960 (11)	scaffold_5:12620048-12621783(+) (11)	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12741.1.A1_at	A	A1TS	POPTR_0005s15960	POPTR_0005s15960 (11)	scaffold_5:12621612-12621743(+) (11)	NA	NA	NA	AT4G08230.1	glycine-rich protein 	LOC_Os03g15720.2	expressed protein	Medtr5g065150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127421.1.A1_at	A	A1TS	POPTR_0005s26280	POPTR_0005s26280 (11)	scaffold_5:24347323-24348703(+) (11)	NA	Q9ZRZ8	DEAD-box ATP-dependent RNA helicase 28	AT4G16630.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os12g29660.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g067120.1	"Helicase, C-terminal "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.127423.1.A1_at	A	A1TS	POPTR_0001s13620	POPTR_0001s13620 (11)	scaffold_1:10681762-10682161(+) (11)	NA	NA	NA	AT1G24265.2	Protein of unknown function (DUF1664) 	LOC_Os01g01070.2	expressed protein	Medtr7g022170.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127428.1.A1_at	A	A1MS	POPTR_0003s09900	POPTR_0003s09900 (11)	scaffold_3:11067421-11069116(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G32090.1	early-responsive to dehydration stress protein (ERD4) 	LOC_Os10g42820.1	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g027680.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.127432.1.A1_at	A	A1TS	POPTR_0008s07900	POPTR_0008s07900 (10)	scaffold_8:4859261-4859335(-) (10)	NA	Q7XUK4	Endoglucanase 12	AT1G65610.1	Six-hairpin glycosidases superfamily protein 	LOC_Os04g41970.1	"endoglucanase, putative, expressed"	Medtr3g106800.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.127433.1.A1_at	A	A1TS	POPTR_0016s03280	POPTR_0016s03280 (11)	scaffold_16:1677937-1678475(-) (11)	NA	P25011	G2/mitotic-specific cyclin S13-6	AT5G06150.1	Cyclin family protein 	LOC_Os05g41390.1	"cyclin, putative, expressed"	Medtr7g106110.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.127435.1.A1_at	A	A1TS	POPTR_0015s12720	POPTR_0015s12720 (11)	scaffold_15:12953269-12953517(-) (11)	NA	NA	NA	AT5G36970.1	NDR1/HIN1-like 25 	LOC_Os04g58090.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr5g084030.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.127438.1.A1_at	A	A1TS	POPTR_0007s04340	POPTR_0007s04340 (9)	scaffold_7:2656169-2657451(+) (11)	NA	Q8L7V3	Probable methyltransferase PMT26	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.127443.1.A1_at	A	A1TS	POPTR_0006s03700	POPTR_0006s03700 (11)	scaffold_6:2464075-2464442(+) (11)	NA	P47082	Vacuolar amino acid transporter 1	AT2G41190.1	Transmembrane amino acid transporter family protein 	LOC_Os02g54730.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g106930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127447.1.S1_at	A	A1TS	POPTR_0007s12540	POPTR_0007s12540 (11)	scaffold_7:12835436-12835798(+) (11)	NA	Q9NVU0	DNA-directed RNA polymerase III subunit RPC5	AT5G49530.1	SIN-like family protein 	LOC_Os08g16780.1	"sin-like protein conserved region containing protein, expressed"	Medtr5g026170.1	Sin-like protein conserved region 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.12745.2.A1_at	A	A1TS	POPTR_0007s15080	POPTR_0007s15080 (11)	scaffold_7:14723067-14723309(-) (11)	NA	NA	NA	AT1G16720.1	high chlorophyll fluorescence phenotype 173 	LOC_Os06g49120.1	"Complex I intermediate-associated protein 30 domain containing protein, putative, expressed"	Medtr4g163250.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127452.1.A1_at	A	A1TS	POPTR_0018s02830	POPTR_0018s02830 (11)	scaffold_18:2496949-2497047(-) (11)	NA	NA	NA	AT2G24970.1	unknown protein; Has 33 Blast hits to 33 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os01g56090.1	expressed protein	Medtr1g016540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127478.1.A1_at	A	A1TS	POPTR_0017s09140	POPTR_0017s09140 (10)	scaffold_17:7806768-7806980(+) (10)	POPTR_0017s09160 (7)	O81906	G-type lectin S-receptor-like serine/threonine-protein kinase B120	AT4G21390.1	S-locus lectin protein kinase family protein 	LOC_Os07g36590.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr5g005710.1	Protein kinase; N-6 Adenine-specific DNA methylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.127481.1.A1_at	A	A1TS	POPTR_0008s22650	POPTR_0008s22650 (11)	scaffold_8:17310918-17311212(+) (11)	NA	NA	NA	AT5G18540.1	unknown protein; Has 2026 Blast hits to 792 proteins in 129 species: Archae - 2; Bacteria - 12; Metazoa - 1126; Fungi - 267; Plants - 292; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink). 	LOC_Os07g47340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127488.1.A1_at	A	A1MS	POPTR_0011s14840	POPTR_0011s14840 (11)	scaffold_11:17095093-17095280(+) (11)	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.127492.1.A1_at	A	A1MS	POPTR_0014s11660	POPTR_0014s11660 (9)	scaffold_14:8638093-8638676(+) (9)	POPTR_0014s11690 (7)//POPTR_0008s19530 (6)	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.2	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.127492.1.A1_s_at	A	A2TS	POPTR_0008s19530	POPTR_0014s11690 (11)//POPTR_0008s19530 (11)	scaffold_14:8668366-8668767(+) (11)//scaffold_8:13458217-13458619(+) (11)	NA	O04716	DNA mismatch repair protein Msh6-1	AT4G02070.1	MUTS homolog 6 	LOC_Os09g24220.1	"MSH-like DNA mismatch repair protein, putative"	Medtr7g132900.1	"DNA mismatch repair protein MutS, C-terminal; Tudor "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.127497.1.A1_at	A	A1TS	POPTR_0012s07090	POPTR_0012s07090 (10)	scaffold_12:7779640-7779813(+) (10)	NA	P53997	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.12750.1.A1_s_at	A	A1TS	POPTR_0006s15580	POPTR_0006s15580 (11)	scaffold_6:13019572-13019911(-) (11)	NA	Q9SU79	Probable polyamine oxidase 5	AT4G29720.1	polyamine oxidase 5 	LOC_Os01g51320.1	"peroxisomal N-acetyl-spermine/spermidine oxidase precursor, putative, expressed"	Medtr2g045700.1	Amine oxidase 	NA	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.127504.1.A1_at	A	A1TS	POPTR_0006s02520	POPTR_0006s02520 (10)	scaffold_6:1641959-1642650(+) (10)	NA	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.127516.1.A1_at	A	A1TS	POPTR_0018s03620	POPTR_0018s03620 (11)	scaffold_18:3113729-3113866(+) (11)	NA	NA	NA	AT5G57510.1	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g128630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127518.1.A1_at	A	A1TS	POPTR_0001s02450	POPTR_0001s02450 (9)	scaffold_1:1901440-1901500(+) (9)	NA	Q39204	Transcription factor MYC2	AT1G32640.1	Basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.127519.1.A1_at	A	A1MS	POPTR_0002s17390	POPTR_0002s17390 (11)	scaffold_2:13149433-13149656(-) (11)	NA	NA	NA	AT2G46550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g30930.1	expressed protein	Medtr3g123640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127520.1.A1_at	A	A1TS	POPTR_0006s01820	POPTR_0006s01820 (11)	scaffold_6:1093317-1093918(-) (11)	NA	NA	NA	AT4G17240.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; Has 1142 Blast hits to 1055 proteins in 252 species: Archae - 22; Bacteria - 318; Metazoa - 248; Fungi - 96; Plants - 59; Viruses - 3; Other Eukaryotes - 396 (source: NCBI BLink). 	LOC_Os05g46920.1	expressed protein	Medtr2g030560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127522.1.A1_at	A	A1TS	POPTR_0001s46860	POPTR_0001s46860 (11)	scaffold_1:47229939-47230052(-) (11)	NA	NA	NA	AT4G20880.1	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) 	NA	NA	AC147501_24.1	"Putative transcription factor, AC147501.9 100411-98848 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127522.1.A1_s_at	A	A1TS	POPTR_0001s46860	POPTR_0001s46860 (11)	scaffold_1:47229807-47229948(-) (11)	POPTR_0011s16510 (7)	NA	NA	AT4G20880.1	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) 	NA	NA	AC147501_24.1	"Putative transcription factor, AC147501.9 100411-98848 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127528.1.A1_at	A	A1TS	POPTR_0005s05000	POPTR_0005s05000 (11)	scaffold_5:3332153-3333125(-) (11)	NA	O23733	Cysteine synthase	AT3G04940.1	cysteine synthase D1 	LOC_Os03g53650.3	"cysteine synthase, putative, expressed"	Medtr1g096600.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.127528.1.A1_s_at	A	A1TS	POPTR_0005s05000	POPTR_0005s05000 (11)	scaffold_5:3332235-3333358(-) (11)	NA	O23733	Cysteine synthase	AT3G04940.1	cysteine synthase D1 	LOC_Os03g53650.3	"cysteine synthase, putative, expressed"	Medtr1g096600.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.127541.1.A1_at	A	A1TS	POPTR_0001s33290	POPTR_0001s33290 (11)	scaffold_1:31476902-31477440(-) (11)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os09g33450.1	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr7g096550.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.127543.1.A1_at	A	A1MA	POPTR_0003s17180	POPTR_0003s17180 (11)	scaffold_3:16619440-16619970(-) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127545.1.A1_s_at	A	A1TS	POPTR_0006s21080	POPTR_0006s21080 (11)	scaffold_6:20183622-20184186(+) (11)	NA	P48578	Serine/threonine-protein phosphatase PP2A-3 catalytic subunit	AT3G58500.1	protein phosphatase 2A-4 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	AC235488_34.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase AC235488.1 160871-167050 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.127545.2.A1_at	A	A1TS	POPTR_0016s06190	POPTR_0016s06190 (11)	scaffold_16:4145853-4146468(+) (11)	NA	P48578	Serine/threonine-protein phosphatase PP2A-3 catalytic subunit	AT3G58500.1	protein phosphatase 2A-4 	LOC_Os03g59060.2	"OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed"	AC235488_34.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase AC235488.1 160871-167050 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.127546.1.A1_a_at	A	A1TS	POPTR_0006s25420	POPTR_0006s25420 (11)	scaffold_6:23822468-23824701(-) (11)	NA	NA	NA	AT5G11630.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17310.2); Has 82 Blast hits to 82 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g130500.1	"transcription factor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127569.1.A1_at	A	A1MS	POPTR_0011s17240	POPTR_0011s17240 (10)	scaffold_11:18840764-18841469(-) (11)	NA	Q9ZWC8	Serine/threonine-protein kinase BRI1-like 1	AT1G55610.2	BRI1 like 	LOC_Os09g12240.1	"serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.127574.1.A1_at	A	A1TS	POPTR_0005s00270	POPTR_0005s00270 (11)	scaffold_5:43539-43956(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g134610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1276.1.S1_a_at	A	A1TS	POPTR_0005s00710	POPTR_0005s00710 (11)	scaffold_5:312454-313516(-) (11)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1276.1.S1_at	A	A1TS	POPTR_0005s00710	POPTR_0005s00710 (11)	scaffold_5:313664-313749(-) (11)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1276.2.S1_at	A	A1MS	POPTR_0005s00710	POPTR_0005s00710 (9)	scaffold_5:312004-312418(-) (9)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1276.3.S1_s_at	A	A1TS	POPTR_0013s00610	POPTR_0013s00610 (11)	scaffold_13:295312-296209(-) (11)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1276.5.S1_at	A	A1TS	POPTR_0005s00710	POPTR_0005s00710 (11)	scaffold_5:313245-313350(-) (11)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12763.1.S1_a_at	A	A1TS	POPTR_0012s04220	POPTR_0012s04220 (11)	scaffold_12:3461787-3462508(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.2	jasmonate-zim-domain protein 3 	LOC_Os09g23660.2	"ZIM motif family protein, expressed"	Medtr6g083230.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12763.2.S1_at	A	A1TS	POPTR_0013s10040	POPTR_0013s10040 (11)	scaffold_13:10024234-10024718(+) (11)	NA	Q9CAG8	F-box/kelch-repeat protein At1g67480	AT1G67480.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os02g30210.2	"OsFBK7 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12763.3.S1_s_at	A	A1TS	POPTR_0015s04880	POPTR_0015s04880 (11)	scaffold_15:5090764-5092713(-) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	Medtr6g083230.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12763.4.S1_at	A	A1TS	POPTR_0012s04220	POPTR_0012s04220 (10)	scaffold_12:3462589-3463015(+) (10)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.2	jasmonate-zim-domain protein 3 	LOC_Os09g23660.2	"ZIM motif family protein, expressed"	Medtr6g083230.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12764.1.A1_s_at	A	A1TS	POPTR_0004s22360	POPTR_0004s22360 (11)	scaffold_4:21292277-21292740(+) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT2G28060.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os09g20010.2	"SNF1-related protein kinase regulatory subunit beta-2, putative, expressed"	AC235487_26.1	"5-AMP-activated protein kinase, beta subunit, complex-interacting region AC235487.1 128441-124122 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12764.2.S1_a_at	A	A1TS	POPTR_0009s01430	POPTR_0009s01430 (11)	scaffold_9:1685644-1686154(-) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT2G28060.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os09g20010.2	"SNF1-related protein kinase regulatory subunit beta-2, putative, expressed"	AC235487_26.1	"5-AMP-activated protein kinase, beta subunit, complex-interacting region AC235487.1 128441-124122 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127640.1.A1_at	A	A1TS	POPTR_0004s10570	POPTR_0004s10570 (10)	scaffold_4:9105428-9105581(-) (11)	NA	NA	NA	AT1G61600.1	Protein of unknown function (DUF1262) 	LOC_Os08g31880.1	conserved hypothetical protein	Medtr5g036800.1	Protein of unknown function DUF1262 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127644.1.A1_s_at	A	A1TS	POPTR_0012s01680	POPTR_0012s01680 (11)	scaffold_12:1262465-1262502(-) (11)	NA	Q94AT1	Probable protein phosphatase 2C 76	AT5G53140.1	Protein phosphatase 2C family protein 	LOC_Os05g50970.1	"protein phosphatase 2C, putative, expressed"	Medtr3g124450.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127666.1.A1_at	A	A1TS	POPTR_0001s01320	POPTR_0001s01320 (11)	scaffold_1:986012-986203(-) (11)	NA	NA	NA	AT4G19140.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51166.1	expressed protein	Medtr5g027030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127666.1.A1_s_at	A	A1TS	POPTR_0001s01320	POPTR_0001s01320 (11)	scaffold_1:985640-986089(-) (11)	NA	NA	NA	AT4G19140.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51166.1	expressed protein	Medtr5g027030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127680.1.A1_at	A	A1TS	POPTR_0013s11190	POPTR_0013s11190 (11)	scaffold_13:11859155-11859513(-) (11)	NA	NA	NA	AT1G35430.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09170.1); Has 23 Blast hits to 23 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127682.1.A1_at	A	A1TS	POPTR_0001s34490	POPTR_0001s34490 (10)	scaffold_1:32607358-32607465(-) (10)	NA	NA	NA	AT1G29790.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g42770.1	"a_IG002N01.7, putative"	Medtr5g085490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127694.1.A1_at	A	A1TS	POPTR_0017s06610	POPTR_0017s06610 (11)	scaffold_17:5014278-5014337(-) (11)	NA	Q5PP37	Histone-lysine N-methyltransferase ATXR2	AT3G21820.1	histone-lysine N-methyltransferase ATXR2 	LOC_Os04g53700.1	"zinc finger protein, putative, expressed"	Medtr2g103680.1	"Histone-lysine N-methyltransferase ATXR2, putative "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.127721.1.A1_at	A	A1MS	POPTR_0010s07840	POPTR_0010s07840 (11)	scaffold_10:8823234-8823796(-) (11)	NA	P31049	Uncharacterized methyltransferase in lpd-3 5'region	AT3G23510.1	Cyclopropane-fatty-acyl-phospholipid synthase 	LOC_Os12g16650.1	"Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed"	Medtr1g064910.1	Cyclopropane-fatty-acyl-phospholipid synthase 	GO:0008610|lipid biosynthetic process	GO:0008825|cyclopropane-fatty-acyl-phospholipid synthase activity	NA
PtpAffx.127722.1.A1_at	A	A1TS	POPTR_0012s09240	POPTR_0012s09240 (11)	scaffold_12:10292637-10293582(-) (11)	NA	NA	NA	AT1G78790.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 69 Blast hits to 69 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os04g40550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127734.1.A1_at	A	A1TS	POPTR_0010s02870	POPTR_0010s02870 (11)	scaffold_10:3360095-3360212(-) (11)	NA	Q0WPJ7	Putative E3 ubiquitin-protein ligase RF298	AT4G03000.2	RING/U-box superfamily protein 	LOC_Os05g04950.2	"protein binding protein, putative, expressed"	Medtr2g025960.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127740.1.A1_at	A	A1TS	POPTR_0002s05240	POPTR_0002s05240 (11)	scaffold_2:3400376-3400822(+) (11)	NA	Q4P4G8	UPF0396 protein UM04995	AT4G02720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g28220.1	"NFKB, putative, expressed"	AC235567_24.1	Protein of unknown function DUF926 AC235567.1 81779-83332 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12775.1.S1_at	A	A1TS	POPTR_0006s09570	POPTR_0006s09570 (11)	scaffold_6:7033053-7033430(-) (11)	NA	NA	NA	AT2G37960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g01008.1	expressed protein	Medtr4g015560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127773.1.A1_at	A	A1TS	POPTR_0011s11950	POPTR_0011s11950 (11)	scaffold_11:14743393-14744002(-) (11)	NA	Q9LUQ5	Probable ubiquitin-conjugating enzyme E2 25	AT3G15355.1	ubiquitin-conjugating enzyme 25 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.127777.1.A1_at	A	A1TS	POPTR_0001s06410	POPTR_0001s06410 (11)	scaffold_1:4913057-4914451(+) (11)	NA	Q6NLV4	Flowering time control protein FY	AT5G13480.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g72220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr8g039570.1	"WD repeat-containing protein 33, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127799.1.A1_at	A	A1TS	POPTR_0009s14980	POPTR_0009s14980 (11)	scaffold_9:11626505-11626613(+) (11)	NA	Q9ZUX7	tRNA dimethylallyltransferase 2	AT2G27760.1	tRNAisopentenyltransferase 2 	LOC_Os01g73760.1	"IPP transferase, putative, expressed"	Medtr4g073150.1	Isopentenyl transferase-like 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.1278.1.A1_s_at	A	A1TS	POPTR_0018s11960	POPTR_0018s11960 (11)	scaffold_18:12592522-12593096(-) (11)	NA	Q9FGT7	Two-component response regulator ARR18	AT2G25180.1	response regulator 12 	LOC_Os02g55320.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.127832.1.A1_s_at	A	A1TS	POPTR_0002s21600	POPTR_0002s21600 (11)	scaffold_2:18119518-18120022(-) (11)	NA	Q7Y175	UBA and UBX domain-containing protein At4g15410	AT4G15410.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma 	LOC_Os04g39040.1	"UBA and UBX domain-containing protein, putative, expressed"	Medtr5g093190.1	UBX; UBA-like; SEP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127842.1.A1_at	A	A1TS	POPTR_0001s27580	POPTR_0001s27580 (11)	scaffold_1:26468232-26468744(+) (11)	NA	NA	NA	AT3G12650.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 31 Blast hits to 31 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g48680.1	expressed protein	Medtr8g037260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127847.1.A1_at	A	A1TS	POPTR_0006s25500	POPTR_0006s25500 (11)	scaffold_6:23908877-23909398(-) (11)	NA	Q9LYD3	Dehydration-responsive element-binding protein 3	AT5G11590.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g10370.1	"AP2 domain containing protein, expressed"	Medtr2g122400.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.127851.1.A1_at	A	A1TS	POPTR_0015s07880	POPTR_0015s07880 (11)	scaffold_15:9154223-9156591(-) (11)	NA	Q8W0W3	Transcription initiation factor IIB	AT3G10330.1	Cyclin-like family protein 	LOC_Os09g36440.1	"transcription initiation factor IIB, putative, expressed"	Medtr7g108460.1	Cyclin-like; ; 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0008270|zinc ion binding||GO:0005515|protein binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.127856.1.A1_at	A	A1MS	POPTR_0006s04540	POPTR_0006s04540 (11)	scaffold_6:3091832-3092218(-) (11)	NA	NA	NA	AT3G57320.1	unknown protein; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g46710.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127862.1.A1_at	A	A1TS	POPTR_0016s05100	POPTR_0016s05100 (11)	scaffold_16:3086664-3087481(-) (11)	NA	Q66GR3	Transcription factor bHLH130	AT2G42280.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr2g117830.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.127865.1.A1_at	A	A1TS	POPTR_0006s06020	POPTR_0006s06020 (11)	scaffold_6:4283382-4283874(+) (11)	NA	Q9Y5A7	NEDD8 ultimate buster 1	AT2G12550.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os04g55150.2	"UBA/TS-N domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127878.1.A1_at	A	A1TS	POPTR_0009s02440	POPTR_0009s02440 (10)	scaffold_9:3195667-3195700(-) (10)	NA	NA	NA	AT5G22430.1	Pollen Ole e 1 allergen and extensin family protein 	NA	NA	Medtr2g107610.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127896.1.A1_at	A	A1TS	POPTR_0005s28010	POPTR_0005s28010 (11)	scaffold_5:25415562-25415800(+) (11)	NA	Q8RY95	Squamosa promoter-binding-like protein 14	AT1G20980.1	squamosa promoter binding protein-like 14 	LOC_Os08g40260.1	"OsSPL15 - SBP-box gene family member, expressed"	Medtr1g039740.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.127897.1.A1_at	A	A2TS	POPTR_0012s00230	POPTR_0012s00490 (11)//POPTR_0012s00230 (11)	scaffold_12:17112-17255(-) (11)//scaffold_12:170930-171077(-) (11)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127897.1.A1_s_at	A	A2TS	POPTR_0012s00230	POPTR_0012s00490 (11)//POPTR_0012s00230 (11)	scaffold_12:17265-17488(-) (11)//scaffold_12:171087-171310(-) (11)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127904.1.A1_at	A	A1TS	POPTR_0004s12270	POPTR_0004s12270 (11)	scaffold_4:11354494-11354763(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.127926.1.A1_at	A	A1TS	POPTR_0006s22090	POPTR_0006s22090 (11)	scaffold_6:21111648-21112208(-) (11)	NA	P42730	Heat shock protein 101	AT3G52490.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g33980.1	"transposon protein, putative, Mutator sub-class, expressed"	Medtr1g112350.1	"Immunoglobulin/major histocompatibility complex; Clp, N terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12794.1.S1_a_at	A	A1TS	POPTR_0002s04980	POPTR_0002s04980 (11)	scaffold_2:3200848-3201190(+) (11)	NA	Q94A20	BI1-like protein	AT1G03070.2	Bax inhibitor-1 family protein 	LOC_Os03g53400.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr1g083870.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127945.1.A1_at	A	A1TS	POPTR_0004s21590	POPTR_0004s21590 (11)	scaffold_4:20639639-20640156(-) (11)	NA	Q9SII7	Pentatricopeptide repeat-containing protein At2g17210	AT2G17210.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os12g36620.1	"pentatricopeptide, putative, expressed"	Medtr4g134960.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127955.1.A1_at	A	A1TS	POPTR_0012s10990	POPTR_0012s10990 (11)	scaffold_12:11623334-11623723(+) (11)	NA	NA	NA	AT5G50970.1	transducin family protein / WD-40 repeat family protein 	LOC_Os03g63470.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g151320.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127966.1.A1_at	A	A1TS	POPTR_0008s00440	POPTR_0008s00440 (11)	scaffold_8:176857-178185(+) (11)	NA	NA	NA	AT1G78915.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g18720.1	"tetratricopeptide repeat containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.127968.1.A1_at	A	A1TS	POPTR_0014s02630	POPTR_0014s02630 (11)	scaffold_14:2189384-2189888(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.127968.2.A1_a_at	A	A2TS	POPTR_0014s02630	POPTR_0014s02630 (11)//POPTR_0014s02650 (11)	scaffold_14:2189212-2189615(+) (11)//scaffold_14:2208912-2209315(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.127968.2.A1_at	A	A1TS	POPTR_0014s02650	POPTR_0014s02650 (11)	scaffold_14:2208938-2209392(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.12797.2.S1_a_at	A	A1TS	POPTR_0003s01810	POPTR_0003s01810 (11)	scaffold_3:1677820-1678296(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os07g43050.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.127977.1.A1_at	A	A1TS	POPTR_0007s01130	POPTR_0007s01130 (11)	scaffold_7:614958-615679(+) (11)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os02g19970.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.127993.1.A1_at	A	A1TS	POPTR_0003s07520	POPTR_0003s07520 (11)	scaffold_3:9083932-9084353(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT4G16650.1	O-fucosyltransferase family protein 	LOC_Os04g46570.1	"growth regulator related protein, putative, expressed"	Medtr8g105620.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1280.1.S1_at	A	A1TS	POPTR_0005s19200	POPTR_0005s19200 (11)	scaffold_5:17815480-17816922(+) (11)	NA	Q5RC80	RNA-binding protein 39	AT5G09880.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.12800.1.S1_a_at	A	A1TS	POPTR_0009s11560	POPTR_0009s11560 (11)	scaffold_9:9578799-9579143(+) (11)	NA	NA	NA	AT5G48490.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g18750.1	"LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128011.1.A1_at	A	A1TS	POPTR_0003s21910	POPTR_0003s21910 (10)	scaffold_3:19880548-19880941(+) (10)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12560.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011780.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.12802.1.A1_s_at	A	A1TS	POPTR_0014s13580	POPTR_0014s13580 (11)	scaffold_14:9984101-9984504(+) (11)	NA	NA	NA	AT3G26670.3	Protein of unknown function (DUF803) 	LOC_Os02g31874.1	"DUF803 domain containing, putative, expressed"	Medtr3g105270.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12802.2.A1_at	A	A1MS	POPTR_0014s13580	POPTR_0014s13580 (10)	scaffold_14:9983997-9984115(+) (10)	NA	NA	NA	AT3G26670.3	Protein of unknown function (DUF803) 	LOC_Os02g31874.1	"DUF803 domain containing, putative, expressed"	Medtr3g105270.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128034.1.A1_at	A	A1TS	POPTR_0005s12710	POPTR_0005s12710 (9)	scaffold_5:9470087-9470559(+) (9)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.128047.1.A1_at	A	A1TS	POPTR_0001s29610	POPTR_0001s29610 (11)	scaffold_1:28242391-28242959(+) (11)	NA	NA	NA	AT1G16630.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G16270.1); Has 10587 Blast hits to 5736 proteins in 617 species: Archae - 88; Bacteria - 963; Metazoa - 3686; Fungi - 820; Plants - 541; Viruses - 438; Other Eukaryotes - 4051 (source: NCBI BLink). 	LOC_Os03g46920.1	expressed protein	Medtr8g146840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128057.1.A1_at	A	A1TS	POPTR_0015s12980	POPTR_0015s12980 (11)	scaffold_15:13114606-13116341(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
PtpAffx.128059.1.A1_at	A	A1TS	POPTR_0010s11320	POPTR_0010s11320 (11)	scaffold_10:11613126-11613307(-) (11)	NA	Q94B71	Protein OBERON 3	AT1G14740.1	Protein of unknown function (DUF1423) 	LOC_Os03g13590.1	"potyvirus VPg interacting protein, putative, expressed"	CU633465_5.1	Arabidopsis thaliana 130.7kDa hypothetical protein CU633465.7 34422-38324 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128059.1.A1_s_at	A	A1TS	POPTR_0010s11320	POPTR_0010s11320 (11)	scaffold_10:11613299-11613776(-) (11)	NA	Q94B71	Protein OBERON 3	AT1G14740.1	Protein of unknown function (DUF1423) 	LOC_Os03g13590.1	"potyvirus VPg interacting protein, putative, expressed"	CU633465_5.1	Arabidopsis thaliana 130.7kDa hypothetical protein CU633465.7 34422-38324 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128060.1.A1_a_at	A	A1TS	POPTR_0020s00320	POPTR_0020s00320 (10)	scaffold_20:364980-365516(-) (10)	NA	O82256	Zinc finger protein CONSTANS-LIKE 13	AT2G47890.1	B-box type zinc finger protein with CCT domain 	LOC_Os03g22770.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g129880.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.128061.1.A1_at	A	A1TS	POPTR_0001s13960	POPTR_0001s13960 (11)	scaffold_1:11001963-11002006(+) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128061.1.A1_s_at	A	A1TS	POPTR_0001s13960	POPTR_0001s13960 (11)	scaffold_1:11001760-11001849(+) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128067.1.A1_at	A	A1MS	POPTR_0006s20150	POPTR_0006s20150 (11)	scaffold_6:19205511-19205683(+) (11)	POPTR_0018s11860 (6)	Q5XJD3	Pre-mRNA 3'-end-processing factor FIP1	AT5G58040.1	homolog of yeast FIP1 [V] 	LOC_Os03g51520.2	"fip1 motif family protein, expressed"	Medtr8g137570.1	Fip1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128070.1.A1_at	A	A1MS	POPTR_0015s05140	POPTR_0015s05140 (10)	scaffold_15:5478223-5478460(+) (10)	NA	Q09690	Dual specificity protein kinase pom1	AT1G73460.1	Protein kinase superfamily protein 	LOC_Os03g51020.1	expressed protein	Medtr6g078370.1	"protein kinase family protein, related "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.128071.1.A1_at	A	A1TS	POPTR_0005s09570	POPTR_0005s09570 (11)	scaffold_5:6667953-6668328(-) (11)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12808.1.S1_s_at	A	A1TS	POPTR_0002s07380	POPTR_0002s07380 (11)	scaffold_2:5062679-5063042(+) (11)	NA	Q8W234	Transcriptional corepressor SEUSS	AT1G43850.2	SEUSS transcriptional co-regulator 	LOC_Os11g10070.1	"transcriptional corepressor SEUSS, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128091.1.A1_at	A	A1TS	POPTR_0006s01890	POPTR_0006s01890 (11)	scaffold_6:1136945-1137374(-) (11)	NA	NA	NA	AT4G16400.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1281.1.A1_at	A	A1TS	POPTR_0008s06040	POPTR_0008s06040 (11)	scaffold_8:3555937-3556293(-) (11)	NA	Q28CY2	Eukaryotic translation initiation factor 3 subunit G	AT3G11400.1	eukaryotic translation initiation factor 3G1 	LOC_Os02g54700.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g154870.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1281.2.S1_at	A	A1TS	POPTR_0010s20650	POPTR_0010s20650 (11)	scaffold_10:18142319-18142614(+) (11)	NA	Q28CY2	Eukaryotic translation initiation factor 3 subunit G	AT3G11400.1	eukaryotic translation initiation factor 3G1 	LOC_Os02g54700.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g154870.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1281.3.A1_a_at	A	A1TS	POPTR_0008s06040	POPTR_0008s06040 (11)	scaffold_8:3557455-3557752(-) (11)	NA	Q28CY2	Eukaryotic translation initiation factor 3 subunit G	AT3G11400.1	eukaryotic translation initiation factor 3G1 	LOC_Os02g54700.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g154870.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1281.3.A1_at	A	A1MS	POPTR_0008s06040	POPTR_0008s06040 (11)	scaffold_8:3557198-3557469(-) (11)	NA	Q28CY2	Eukaryotic translation initiation factor 3 subunit G	AT3G11400.1	eukaryotic translation initiation factor 3G1 	LOC_Os02g54700.2	"RNA recognition motif containing protein, putative, expressed"	Medtr4g154870.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.128107.1.A1_at	A	A1TS	POPTR_0016s10580	POPTR_0016s10580 (11)	scaffold_16:8886555-8887029(+) (11)	NA	Q93VV0	Probable S-acyltransferase At3g09320	AT3G09320.1	DHHC-type zinc finger family protein 	LOC_Os01g62620.1	"DHHC zinc finger domain containing protein, expressed"	Medtr1g120410.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.128115.1.A1_at	A	A1TS	POPTR_0018s11630	POPTR_0018s11630 (11)	scaffold_18:12283288-12283519(-) (11)	NA	P59583	Probable WRKY transcription factor 32	AT4G30935.1	WRKY DNA-binding protein 32 	LOC_Os08g17400.1	"WRKY DNA-binding domain containing protein, expressed"	Medtr8g145380.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.128118.1.A1_at	A	A1TS	POPTR_0003s07930	POPTR_0003s07930 (9)	scaffold_3:9420808-9421870(-) (9)	NA	Q8W5B1	Polycomb group protein VERNALIZATION 2	AT4G16845.1	VEFS-Box of polycomb protein 	LOC_Os09g13630.1	"ZOS9-03 - C2H2 zinc finger protein, expressed"	Medtr5g013280.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128121.1.A1_at	A	A1TS	POPTR_0014s19020	POPTR_0014s19020 (9)	scaffold_14:16735163-16735848(+) (9)	NA	Q6ZRS2	Helicase SRCAP	AT3G24870.1	"Helicase/SANT-associated, DNA binding protein "	LOC_Os08g08000.1	"DNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128129.1.A1_at	A	A1TS	POPTR_0014s16250	POPTR_0014s16250 (11)	scaffold_14:12330997-12331726(-) (11)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT5G35740.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g105130.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128135.1.A1_at	A	A1TS	POPTR_0002s20070	POPTR_0002s20070 (11)	scaffold_2:16005138-16005420(+) (11)	NA	NA	NA	AT4G13030.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g19280.1	expressed protein	Medtr7g062150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128139.1.A1_a_at	A	A1TS	POPTR_0002s11920	POPTR_0002s11920 (11)	scaffold_2:8834660-8835388(+) (11)	NA	NA	NA	AT5G63905.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g023290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128139.1.A1_at	A	A1TS	POPTR_0002s11920	POPTR_0002s11920 (9)	scaffold_2:8834639-8835632(+) (9)	NA	NA	NA	AT5G63905.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g023290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128139.2.A1_at	A	A1TS	POPTR_0002s11920	POPTR_0002s11920 (10)	scaffold_2:8834822-8835253(+) (10)	NA	NA	NA	AT5G63905.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g023290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128147.1.A1_a_at	A	A1TS	POPTR_0030s00330	POPTR_0030s00330 (11)	scaffold_30:102958-104268(-) (11)	NA	Q9VLT1	Protein MON2 homolog	AT5G27970.1	ARM repeat superfamily protein 	LOC_Os01g56590.1	"guanine nucleotide exchange family protein, putative, expressed"	Medtr1g096700.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128159.1.S1_s_at	A	A1TS	POPTR_0017s03520	POPTR_0017s03520 (11)	scaffold_17:2558487-2558746(+) (11)	NA	Q50EK6	Abietadienol/abietadienal oxidase	AT1G73340.1	Cytochrome P450 superfamily protein 	LOC_Os11g04710.1	"cytochrome P450, putative, expressed"	Medtr6g083890.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.128165.1.A1_a_at	A	A1TS	POPTR_0017s06590	POPTR_0017s06590 (11)	scaffold_17:5003596-5003947(+) (11)	NA	NA	NA	AT4G26400.1	RING/U-box superfamily protein 	NA	NA	Medtr2g117130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128166.1.A1_at	A	A1TS	POPTR_0010s09940	POPTR_0010s09940 (9)	scaffold_10:10542752-10543536(+) (9)	NA	Q9S7X6	Thermospermine synthase ACAULIS5	AT5G19530.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g14190.1	"spermidine synthase, putative, expressed"	Medtr5g006230.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.128173.1.A1_at	A	A1TS	POPTR_0017s04250	POPTR_0017s04250 (11)	scaffold_17:3281536-3281744(+) (11)	NA	Q9R0X4	"Acyl-coenzyme A thioesterase 9, mitochondrial"	AT2G30720.1	Thioesterase/thiol ester dehydrase-isomerase superfamily protein 	LOC_Os09g34190.1	"acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed"	Medtr4g128060.1	Thioesterase superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128177.1.A1_at	A	A1TS	POPTR_0017s00270	POPTR_0017s00270 (10)	scaffold_17:57993-58151(-) (11)//scaffold_17:75337-75494(-) (9)//scaffold_17:2672781-2672939(+) (10)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	NA	NA	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1282.1.S1_at	A	A1TS	POPTR_0007s04670	POPTR_0007s04670 (11)	scaffold_7:2888732-2889222(-) (11)	NA	NA	NA	AT3G52430.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os11g09010.2	"lipase, putative, expressed"	Medtr4g143520.1	"Lipase, class 3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128201.1.S1_at	A	A1TS	POPTR_0006s17730	POPTR_0006s17730 (10)	scaffold_6:15881416-15882143(+) (10)	NA	Q8LGU6	Cell division cycle protein 27 homolog B	AT2G20000.1	CDC27  family protein 	LOC_Os06g41750.1	"tetratricopeptide repeat domain containing protein, expressed"	AC233572_1.1	Tetratricopeptide-like helical; AC233572.2 2-8768 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128202.1.A1_at	A	A1TS	POPTR_0006s27800	POPTR_0006s27800 (9)	scaffold_6:25660524-25661675(+) (9)	NA	P62598	Two-component response regulator ARR12	AT2G25180.1	response regulator 12 	LOC_Os02g08500.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.128206.1.A1_s_at	A	A1TS	POPTR_0005s22620	POPTR_0005s22620 (11)	scaffold_5:21532681-21533139(+) (11)	NA	Q58DV0	Protein pelota homolog	AT4G27650.1	Eukaryotic release factor 1 (eRF1) family protein 	LOC_Os04g56480.1	"pelota, putative, expressed"	Medtr7g124490.1	Probable translation factor pelota 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128212.1.A1_at	A	A1TS	POPTR_0012s05850	POPTR_0012s05850 (9)	scaffold_12:5701134-5701317(+) (9)	NA	NA	NA	AT5G07980.1	dentin sialophosphoprotein-related 	LOC_Os03g11460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128225.1.A1_a_at	A	A1TS	POPTR_0009s09780	POPTR_0009s09780 (11)	scaffold_9:8569604-8569862(+) (11)	NA	Q71DJ5	Triacylglycerol lipase 1	AT2G15230.1	lipase 1 	LOC_Os09g01590.1	"triacylglycerol lipase 1 precursor, putative, expressed"	Medtr5g092310.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.128235.1.A1_at	A	A1TS	POPTR_0007s12170	POPTR_0007s12170 (11)	scaffold_7:12482201-12482648(-) (11)	NA	Q9SW80	BEL1-like homeodomain protein 2	AT4G36870.2	BEL1-like homeodomain 2 	LOC_Os03g52239.2	"homeobox domain containing protein, expressed"	Medtr5g018810.1	POX; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.128240.1.A1_at	A	A1TS	POPTR_0014s04870	POPTR_0014s04870 (10)	scaffold_14:3764879-3765392(+) (10)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
PtpAffx.128269.1.S1_s_at	A	A1TS	POPTR_0014s10140	POPTR_0014s10140 (11)	scaffold_14:7606854-7607948(+) (11)	NA	P19684	"33 kDa ribonucleoprotein, chloroplastic"	AT1G01080.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g02390.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g146100.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.128286.1.A1_a_at	A	A1TS	POPTR_0004s20030	POPTR_0004s20030 (9)	scaffold_4:19674021-19674263(-) (9)	NA	Q9ZQW8	Splicing factor U2af small subunit A	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.128286.1.A1_at	A	A1TS	POPTR_0004s20030	POPTR_0004s20030 (11)	scaffold_4:19674000-19675260(-) (11)	NA	Q9ZQW8	Splicing factor U2af small subunit A	AT5G42820.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os09g31482.3	"splicing factor U2AF, putative, expressed"	Medtr1g039850.1	U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.128300.1.S1_s_at	A	A9TS	POPTR_0019s01950	POPTR_0073s00200 (11)//POPTR_0294s00200 (11)//POPTR_0019s02760 (11)//POPTR_0019s01950 (11)//POPTR_0019s02740 (11)//POPTR_0019s02700 (11)//POPTR_0053s00220 (11)//POPTR_0019s02720 (11)//POPTR_0019s01910 (9)	scaffold_19:1685341-1685547(+) (9)//scaffold_19:1731861-1732919(+) (11)//scaffold_19:2508488-2509442(+) (11)//scaffold_19:2524814-2525898(+) (11)//scaffold_19:2542715-2543756(+) (11)//scaffold_19:2567201-2568310(+) (11)//scaffold_294:11229-12284(+) (11)//scaffold_53:57565-58658(-) (11)//scaffold_73:13475-14509(+) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g091330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.128322.1.S1_at	A	A1TS	POPTR_0001s47540	POPTR_0001s47540 (11)	scaffold_1:47696510-47698415(+) (11)	NA	Q9FKT0	Actin-related protein 8	AT5G56180.1	actin-related protein 8 	LOC_Os04g57210.1	"actin-6, putative, expressed"	Medtr3g016840.1	Cyclin-like F-box; Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.128342.1.S1_s_at	A	A1TS	POPTR_0004s05470	POPTR_0004s05470 (11)	scaffold_4:4225636-4226550(-) (11)	NA	Q94CD5	Ubiquitin-like modifier-activating enzyme atg7	AT5G45900.1	ThiF family protein 	LOC_Os01g42850.2	"ThiF family domain containing protein, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity	NA
PtpAffx.128445.1.S1_at	A	A1TS	POPTR_0014s15170	POPTR_0014s15170 (11)	scaffold_14:11263990-11264898(-) (11)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.12845.1.S1_s_at	A	A1TS	POPTR_0014s09920	POPTR_0014s09920 (11)	scaffold_14:7439868-7440314(-) (11)	NA	P53681	CDPK-related protein kinase	AT2G46700.1	CDPK-related kinase 3 	LOC_Os06g50030.1	"CAMK_CAMK_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr7g145870.1	Protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.128450.1.S1_at	A	A1TS	POPTR_0002s09750	POPTR_0002s09750 (9)	scaffold_2:6991583-6991675(+) (9)	POPTR_0005s17110 (8)	Q9S9Z7	Probable protein phosphatase 2C 10	AT1G34750.1	Protein phosphatase 2C family protein 	LOC_Os04g37904.1	"protein phosphatase 2C, putative, expressed"	Medtr5g072790.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12848.1.S1_at	A	A1TS	POPTR_0008s17650	POPTR_0008s17650 (11)	scaffold_8:11861066-11861505(-) (11)	NA	Q9SP35	Mitochondrial import inner membrane translocase subunit Tim17	AT2G37410.2	translocase inner membrane subunit 17-2 	LOC_Os07g41330.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
PtpAffx.128484.1.A1_s_at	A	A1TS	POPTR_0003s07640	POPTR_0003s07640 (11)	scaffold_3:9171286-9171484(-) (11)	NA	P97868	E3 ubiquitin-protein ligase RBBP6	AT5G47430.1	"DWNN domain, a CCHC-type zinc finger "	LOC_Os10g29560.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g105530.1	"DNA-binding protein-like, putative "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.128494.1.S1_at	A	A2TS	POPTR_0002s02680	POPTR_0002s02680 (11)//POPTR_0005s25750 (11)	scaffold_2:1587831-1588355(-) (11)//scaffold_5:23952275-23952781(+) (11)	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128497.1.S1_at	A	A1TS	POPTR_0018s09080	POPTR_0018s09080 (11)	scaffold_18:9983084-9983604(-) (11)	NA	B7K735	Elongation factor Ts	AT4G29060.1	elongation factor Ts family protein 	LOC_Os12g35630.1	"elongation factor TS family protein, expressed"	Medtr6g098870.1	"Ubiquitin-associated; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	GO:0005622|intracellular
PtpAffx.128519.1.S1_at	A	A2TS	POPTR_0679s00220	POPTR_0679s00220 (10)//POPTR_0011s03110 (9)	scaffold_11:3176717-3177197(+) (9)//scaffold_679:3174-7372(-) (10)	POPTR_0306s00210 (7)	Q9FK75	GDSL esterase/lipase At5g45670	AT5G45670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.128537.1.S1_at	A	A1TS	POPTR_0008s15590	POPTR_0008s15590 (10)	scaffold_8:10367470-10368714(+) (10)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128558.1.S1_at	A	A1TS	POPTR_0008s04930	POPTR_0008s04930 (10)	scaffold_8:2857024-2858057(-) (10)	NA	Q9FY46	"Sulfate transporter 4.1, chloroplastic"	AT5G13550.1	sulfate transporter 4.1 	LOC_Os09g06499.2	"sulfate transporter 4.1, chloroplast precursor, putative, expressed"	Medtr7g022760.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.128559.2.S1_s_at	A	A1TS	POPTR_0002s23920	POPTR_0002s23920 (11)	scaffold_2:21395009-21396115(+) (11)	NA	Q60HE9	Lysosomal alpha-mannosidase	AT3G26720.1	Glycosyl hydrolase family 38 protein 	LOC_Os11g32260.1	"lysosomal alpha-mannosidase precursor, putative, expressed"	Medtr7g097040.1	"Glycoside hydrolase, family 38; Sugar transporter superfamily; Galactose mutarotase-like; "	GO:0044262|cellular carbohydrate metabolic process||GO:0006013|mannose metabolic process||GO:0044281|small molecule metabolic process	GO:0008270|zinc ion binding||GO:0004559|alpha-mannosidase activity	NA
PtpAffx.128559.3.A1_a_at	A	A1TS	POPTR_0005s00250	POPTR_0005s00250 (11)	scaffold_5:34189-34701(+) (11)	NA	Q8BG09	Transmembrane protein 184B	AT3G05940.1	Protein of unknown function (DUF300) 	LOC_Os03g61210.1	"domain of unknown function domain containing protein, expressed"	Medtr7g134570.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1286.1.S1_s_at	A	A1TS	POPTR_0017s14280	POPTR_0017s14280 (11)	scaffold_17:14400137-14400390(+) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr8g140130.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.1286.2.S1_s_at	A	A1TS	POPTR_0004s10660	POPTR_0004s10660 (11)	scaffold_4:9179513-9179609(+) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.1286.5.S1_s_at	A	A1TS	POPTR_0004s10660	POPTR_0004s10660 (11)	scaffold_4:9178790-9178837(+) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.128617.1.S1_at	A	A1TS	POPTR_0008s19520	POPTR_0008s19520 (11)	scaffold_8:13447636-13449319(-) (11)	NA	NA	NA	AT1G69935.1	short hypocotyl in white light1 	LOC_Os03g12930.1	expressed protein	Medtr5g038230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128620.1.A1_at	A	A1TS	POPTR_0008s10090	POPTR_0008s10090 (11)	scaffold_8:6327207-6327687(+) (11)	NA	NA	NA	AT3G06500.1	Plant neutral invertase family protein 	LOC_Os03g20020.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g102720.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128624.1.A1_at	A	A1TS	POPTR_0016s10980	POPTR_0016s10980 (11)	scaffold_16:9401878-9403486(-) (11)	NA	Q9SCQ2	E3 ubiquitin-protein ligase UPL7	AT3G53090.2	ubiquitin-protein ligase 7 	LOC_Os03g47949.1	"HECT-domain domain containing protein, expressed"	Medtr2g037340.1	IQ calmodulin-binding region; HECT 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.1287.1.A1_s_at	A	A2TS	POPTR_0006s11530	POPTR_0016s15080 (11)//POPTR_0006s11530 (11)	scaffold_16:14121822-14122402(-) (11)//scaffold_6:8738656-8739249(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT1G79620.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g21230.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g034150.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.128701.1.S1_at	A	A1TS	POPTR_0008s03810	POPTR_0008s03810 (11)	scaffold_8:2055966-2056185(-) (11)	NA	Q43052	Phenylalanine ammonia-lyase G2B	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os02g41650.3	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
PtpAffx.128701.1.S1_s_at	A	A1TS	POPTR_0008s03810	POPTR_0008s03810 (11)	scaffold_8:2054112-2056238(-) (11)	NA	Q43052	Phenylalanine ammonia-lyase G2B	AT2G37040.1	PHE ammonia lyase 1 	LOC_Os02g41650.3	"phenylalanine ammonia-lyase, putative, expressed"	Medtr1g076720.1	Phenylalanine/histidine ammonia-lyase 	GO:0009058|biosynthetic process	GO:0016211|ammonia ligase activity	NA
PtpAffx.128713.1.S1_at	A	A1MS	POPTR_0011s15790	POPTR_0011s15790 (11)	scaffold_11:17854858-17855599(-) (11)	POPTR_0001s43320 (6)	NA	NA	AT2G36840.1	ACT-like superfamily protein 	LOC_Os09g39740.1	"ACT domain containing protein, expressed"	Medtr7g124000.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.12873.1.A1_at	A	A1TS	POPTR_0001s15140	POPTR_0001s15140 (11)	scaffold_1:11979681-11979818(-) (11)	NA	NA	NA	AT4G17600.1	Chlorophyll A-B binding family protein 	LOC_Os02g03330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12873.2.S1_s_at	A	A1TS	POPTR_0003s08180	POPTR_0003s08180 (11)	scaffold_3:9590552-9590831(+) (11)	NA	NA	NA	AT4G17600.1	Chlorophyll A-B binding family protein 	LOC_Os02g03330.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12874.1.S1_at	A	A1TS	POPTR_0006s24900	POPTR_0006s24900 (11)	scaffold_6:23411896-23411931(+) (11)	NA	P49043	Vacuolar-processing enzyme	AT4G32940.1	gamma vacuolar processing enzyme 	LOC_Os01g37910.3	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr3g140280.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.12874.1.S1_s_at	A	A1TS	POPTR_0006s24900	POPTR_0006s24900 (10)	scaffold_6:23411796-23412429(+) (10)	NA	P49043	Vacuolar-processing enzyme	AT4G32940.1	gamma vacuolar processing enzyme 	LOC_Os01g37910.3	"vacuolar-processing enzyme precursor, putative, expressed"	Medtr3g140280.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.128756.1.S1_at	A	A1TS	POPTR_0012s13520	POPTR_0012s13520 (11)	scaffold_12:13641168-13641679(-) (11)	NA	Q9M2Z5	F-box/LRR-repeat protein At3g48880	AT3G48880.2	RNI-like superfamily protein 	LOC_Os10g35920.1	"OsFBX389 - F-box domain containing protein, expressed"	Medtr7g080880.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128783.1.S1_at	A	A1TS	POPTR_0012s05990	POPTR_0012s05990 (11)	scaffold_12:6037339-6038298(-) (11)	NA	P02723	"ADP,ATP carrier protein"	AT5G17400.1	endoplasmic reticulum-adenine nucleotide transporter 1 	LOC_Os11g43960.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g154910.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128785.1.S1_s_at	A	A2TS	POPTR_0008s09440	POPTR_0010s16690 (11)//POPTR_0008s09440 (11)	scaffold_10:15559617-15560271(-) (11)//scaffold_8:5849330-5849973(+) (11)	NA	Q3EC77	Probable methyltransferase PMT5	AT2G03480.1	QUASIMODO2 LIKE 2 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr4g115600.1	"dehydration-responsive protein-related, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.128798.1.S1_at	A	A1TS	POPTR_0017s09050	POPTR_0017s09050 (11)	scaffold_17:7723309-7723915(-) (11)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.128815.1.S1_s_at	A	A1TS	POPTR_0013s08530	POPTR_0013s08530 (11)	scaffold_13:7802633-7803152(+) (11)	NA	O80809	Leucine-rich repeat receptor-like protein CLAVATA2	AT1G65380.1	Leucine-rich repeat (LRR) family protein 	LOC_Os02g39100.1	"fasciated ear2, putative, expressed"	Medtr7g089330.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.128816.1.S1_at	A	A2TS	POPTR_0005s02860	POPTR_0005s02860 (11)//POPTR_0005s02980 (10)	scaffold_5:1849614-1851386(-) (11)//scaffold_5:1947842-1949438(-) (11)	NA	Q9V8W3	Rab proteins geranylgeranyltransferase component A	AT3G06540.1	Rab escort protein 	LOC_Os01g16354.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr5g024130.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128825.2.S1_a_at	A	A2TS	POPTR_0005s18580	POPTR_0005s18580 (11)//POPTR_0007s10510 (9)	scaffold_5:16814663-16815217(-) (11)//scaffold_7:10516871-10517413(+) (11)	NA	Q5XIT1	Microtubule-associated protein RP/EB family member 3	AT5G67270.1	end binding protein 1C 	LOC_Os10g35580.1	"ATEB1A-like microtubule associated protein, putative, expressed"	Medtr5g016450.1	Calponin-like actin-binding; EB1 	NA	GO:0008017|microtubule binding	NA
PtpAffx.128832.1.S1_at	A	A1TS	POPTR_0009s10620	POPTR_0009s10620 (11)	scaffold_9:9084296-9086380(-) (11)	POPTR_0004s14900 (7)	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.128848.1.S1_at	A	A1TS	POPTR_0005s23170	POPTR_0005s23170 (11)	scaffold_5:21988548-21988607(-) (11)	POPTR_0002s05350 (8)	Q2MY58	Patatin group A-3	AT3G63200.1	PATATIN-like protein 9 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g086350.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.128848.1.S1_s_at	A	A2TS	POPTR_0002s05350	POPTR_0005s23170 (11)//POPTR_0002s05350 (11)	scaffold_2:3481192-3481374(+) (11)//scaffold_5:21988344-21988526(-) (11)	NA	Q2MY58	Patatin group A-3	AT3G63200.1	PATATIN-like protein 9 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g086350.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.128871.1.S1_at	A	A1TS	POPTR_0010s14090	POPTR_0010s14090 (11)	scaffold_10:13786189-13787205(-) (11)	NA	NA	NA	AT3G25680.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins in 355 species: Archae - 39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink). 	LOC_Os06g30390.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr5g069510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128889.1.S1_at	A	A1TS	POPTR_0003s16720	POPTR_0003s16720 (11)	scaffold_3:16252850-16253612(-) (11)	NA	Q9C509	Sphingosine-1-phosphate lyase	AT1G27980.1	dihydrosphingosine phosphate lyase 	LOC_Os01g01080.1	"decarboxylase, putative, expressed"	Medtr7g022250.1	Pyridoxal-dependent decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128895.1.S1_at	A	A2TS	POPTR_0006s13650	POPTR_0006s13650 (11)//POPTR_0006s13640 (10)	scaffold_6:10851514-10853635(-) (10)//scaffold_6:10866514-10868812(-) (11)	NA	Q9SMZ4	Alpha-aminoadipic semialdehyde synthase	AT4G33150.2	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme 	LOC_Os02g54254.1	"saccharopine dehydrogenase, putative, expressed"	Medtr8g133370.1	"NAD(P) transhydrogenase, alpha subunit; Saccharopine dehydrogenase; LOR/SDH bifunctional enzyme conserved region "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.128896.1.S1_s_at	A	A1TS	POPTR_0004s16570	POPTR_0004s16570 (11)	scaffold_4:17007553-17009000(+) (11)	NA	Q8GYX8	Chaperone protein dnaJ 10	AT4G39150.2	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os05g46620.1	"chaperone protein dnaJ 10, putative, expressed"	Medtr8g040300.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.1289.1.S1_at	A	A1TS	POPTR_0006s08080	POPTR_0006s08080 (11)	scaffold_6:5886177-5887198(+) (11)	NA	NA	NA	AT5G58110.1	chaperone binding;ATPase activators 	LOC_Os06g49030.1	"activator of 90 kDa heat shock protein ATPase homolog, putative, expressed"	NA	NA	NA	GO:0051087|chaperone binding||GO:0001671|ATPase activator activity	GO:0005737|cytoplasm
PtpAffx.128904.1.S1_at	A	A1TS	POPTR_0001s15530	POPTR_0001s15530 (11)	scaffold_1:12367468-12368801(+) (11)	NA	O65202	Peroxisomal acyl-coenzyme A oxidase 1	AT4G16760.1	acyl-CoA oxidase 1 	LOC_Os06g01390.1	"acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed"	Medtr8g105410.1	Acyl-CoA dehydrogenase C-terminal-like; 	GO:0006635|fatty acid beta-oxidation||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity||GO:0003997|acyl-CoA oxidase activity	GO:0005777|peroxisome
PtpAffx.128912.1.S1_at	A	A1TS	POPTR_0022s00410	POPTR_0022s00410 (10)	scaffold_22:136305-136458(+) (10)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.128912.2.S1_s_at	A	A1TS	POPTR_0022s00410	POPTR_0022s00410 (11)	scaffold_22:135178-135957(+) (11)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
PtpAffx.128944.1.S1_s_at	A	A1TS	POPTR_0012s05180	POPTR_0012s05180 (11)	scaffold_12:4700654-4701034(+) (11)	NA	O81833	G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1	AT4G27300.1	S-locus lectin protein kinase family protein 	LOC_Os07g36570.1	"KI domain interacting kinase 1, putative, expressed"	Medtr6g027990.2	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.128949.1.A1_s_at	A	A1TS	POPTR_0018s13330	POPTR_0018s13330 (11)	scaffold_18:13690664-13693143(-) (11)	NA	Q8LFQ6	Glutaredoxin-C4	AT5G20500.1	Glutaredoxin family protein 	LOC_Os06g44910.1	"OsGrx_C4 - glutaredoxin subgroup I, expressed"	Medtr2g043290.3	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.128965.1.S1_at	A	A1TS	POPTR_0003s03960	POPTR_0003s03960 (10)	scaffold_3:4557836-4558917(-) (10)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
PtpAffx.128967.1.S1_at	A	A1TS	POPTR_0007s10900	POPTR_0007s10900 (9)	scaffold_7:11106102-11106524(+) (9)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.128988.1.S1_at	A	A1TS	POPTR_0009s10190	POPTR_0009s10190 (9)	scaffold_9:8816957-8817431(-) (9)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.128997.1.S1_at	A	A1TS	POPTR_0005s16970	POPTR_0005s16970 (9)	scaffold_5:13995503-13996020(+) (9)	NA	NA	NA	AT5G65170.1	VQ motif-containing protein 	LOC_Os08g31660.1	"VQ domain containing protein, putative, expressed"	Medtr5g072210.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1290.1.A1_s_at	A	A1TS	POPTR_0006s24480	POPTR_0006s24480 (11)	scaffold_6:23072330-23072769(-) (11)	NA	Q9M9C5	Probable leucine-rich repeat receptor-like protein kinase At1g68400	AT1G68400.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os01g04230.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr1g140560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.129001.1.S1_at	A	A1TS	POPTR_0007s07120	POPTR_0007s07120 (10)	scaffold_7:5450269-5450716(-) (10)	NA	Q94JQ6	Cellulose synthase A catalytic subunit 6 [UDP-forming]	AT5G64740.1	cellulose synthase 6 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr4g141680.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.129002.1.S1_at	A	A1MS	POPTR_0005s06600	POPTR_0005s06600 (10)	scaffold_5:4392868-4393041(-) (10)//scaffold_5:4419310-4420055(-) (11)	NA	NA	NA	AT5G64010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g142970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129002.1.S1_s_at	A	A2TS	POPTR_0005s06580	POPTR_0005s06580 (11)//POPTR_0005s06600 (11)	scaffold_5:4393078-4393445(-) (11)//scaffold_5:4419520-4419887(-) (11)	NA	NA	NA	AT5G64010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g142970.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12902.1.A1_at	A	A1TS	POPTR_0002s10040	POPTR_0002s10040 (11)	scaffold_2:7211909-7212654(+) (11)	NA	Q73KB2	Seryl-tRNA synthetase	AT1G11870.2	Seryl-tRNA synthetase 	LOC_Os11g39670.1	"seryl-tRNA synthetase, putative, expressed"	Medtr3g150340.1	"tRNA synthetase, class II (G, H, P and S) "	GO:0006434|seryl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004828|serine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.129030.1.S1_s_at	A	A1TS	POPTR_0002s21490	POPTR_0002s21490 (11)	scaffold_2:17986909-17988667(-) (11)	POPTR_0002s21485 (8)	Q69KJ0	Ribonuclease 3-like protein 3	AT4G15417.1	RNAse II-like 1 	LOC_Os06g25250.1	"endoribonuclease Dicer, putative, expressed"	Medtr3g110470.1	"Ribonuclease III, bacterial "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.12905.1.S1_s_at	A	A1TS	POPTR_0008s14480	POPTR_0008s14480 (11)	scaffold_8:9612798-9613043(+) (11)	NA	Q7NML9	ATP-dependent Clp protease adapter protein ClpS	AT1G68660.1	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein 	LOC_Os01g61700.1	ATP-dependent Clp protease adaptor protein ClpS containing protein	NA	NA	GO:0030163|protein catabolic process||GO:0009057|macromolecule catabolic process	NA	NA
PtpAffx.129062.1.S1_at	A	A1TS	POPTR_0015s08030	POPTR_0015s08030 (10)	scaffold_15:9310145-9311218(-) (10)	NA	Q9S7Q2	"Pentatricopeptide repeat-containing protein At1g74850, chloroplastic"	AT1G74850.1	plastid transcriptionally active 2 	LOC_Os03g60910.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015600.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129129.1.S1_at	A	A1TS	POPTR_0001s02150	POPTR_0001s02150 (10)	scaffold_1:1594785-1595932(+) (10)	NA	Q9QWZ1	Cell cycle checkpoint protein RAD1	AT4G17760.1	damaged DNA binding;exodeoxyribonuclease IIIs 	LOC_Os06g04190.1	"rad1, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008853|exodeoxyribonuclease III activity||GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.129164.1.S1_at	A	A1TS	POPTR_0001s16120	POPTR_0001s16120 (9)	scaffold_1:12941103-12941773(+) (9)	NA	Q9UUH0	Uncharacterized protein C630.12	AT1G53710.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os03g27950.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g027100.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.129168.1.S1_at	A	A1TS	POPTR_0008s16760	POPTR_0008s16760 (11)	scaffold_8:11281949-11282935(+) (11)	POPTR_0010s08130 (7)	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G14350.3	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.129180.1.S1_at	A	A1TS	POPTR_0010s07590	POPTR_0010s07590 (10)	scaffold_10:8617096-8617359(+) (10)	NA	NA	NA	AT1G04530.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04710.1	expressed protein	Medtr1g087320.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12919.1.A1_at	A	A1TS	POPTR_0002s00410	POPTR_0002s00410 (11)	scaffold_2:129787-130292(-) (11)	NA	NA	NA	AT1G76610.1	"Protein of unknown function, DUF617 "	LOC_Os01g59200.1	"DUF617 domain containing protein, expressed"	Medtr3g102280.1	Plant-specific domain of unknown function 3588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129194.1.S1_at	A	A1TS	POPTR_0017s02060	POPTR_0017s02060 (9)	scaffold_17:1497244-1497480(-) (9)	NA	O24301	Sucrose synthase 2	AT5G37180.1	sucrose synthase 5 	LOC_Os04g24430.1	"sucrose synthase, putative, expressed"	Medtr5g084740.1	Sucrose synthase; N-6 Adenine-specific DNA methylase 	GO:0005985|sucrose metabolic process||GO:0009058|biosynthetic process	NA	NA
PtpAffx.129204.1.S1_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (11)	scaffold_2:5545083-5545508(+) (11)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129205.1.S1_a_at	A	A1TS	POPTR_0001s39580	POPTR_0001s39580 (11)	scaffold_1:38785788-38786081(-) (11)//scaffold_1:38786064-38786113(-) (9)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129205.1.S1_at	A	A1TS	POPTR_0001s39580	POPTR_0001s39580 (10)	scaffold_1:38786166-38787981(-) (10)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129205.2.S1_a_at	A	A1TS	POPTR_0001s39580	POPTR_0001s39580 (11)	scaffold_1:38785588-38785707(-) (11)//scaffold_1:38785864-38785983(-) (11)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129205.3.A1_at	A	A1MA	POPTR_0001s39580	POPTR_0001s39580 (11)	scaffold_1:38785406-38785666(+) (11)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129212.1.S1_at	A	A1TS	POPTR_0014s04170	POPTR_0014s04170 (10)	scaffold_14:3298013-3298462(+) (10)	NA	Q8NF37	Lysophosphatidylcholine acyltransferase 1	AT1G80950.1	Phospholipid/glycerol acyltransferase family protein 	LOC_Os05g28960.1	"acyltransferase, putative, expressed"	Medtr7g127360.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.129218.1.S1_at	A	A1TS	POPTR_0012s11320	POPTR_0012s11320 (11)	scaffold_12:11810195-11810698(+) (11)	NA	Q9FLT2	Inositol polyphosphate multikinase beta	AT5G61760.1	inositol polyphosphate kinase 2 beta 	LOC_Os02g32370.1	"inositol hexaphosphate kinase, putative, expressed"	Medtr8g043170.1	Inositol polyphosphate kinase 	NA	GO:0008440|inositol trisphosphate 3-kinase activity	NA
PtpAffx.129221.1.S1_s_at	A	A1TS	POPTR_0017s11360	POPTR_0017s11360 (11)	scaffold_17:11112517-11113322(+) (11)	NA	Q54N48	Protein CLP1 homolog	AT3G04680.2	CLP-similar protein 3 	LOC_Os02g12570.1	"pre-mRNA cleavage complex II protein Clp1, putative, expressed"	Medtr1g146380.1	Pre-mRNA cleavage complex II Clp1 	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	GO:0005525|GTP binding	NA
PtpAffx.12923.1.S1_a_at	A	A1TS	POPTR_0008s10740	POPTR_0008s10740 (11)	scaffold_8:6758934-6759234(+) (11)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT3G16910.1	acyl-activating enzyme 7 	LOC_Os03g19240.1	"AMP-binding enzyme, putative, expressed"	Medtr8g138110.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.129231.1.S1_at	A	A1MS	POPTR_0005s06750	POPTR_0005s06750 (10)	scaffold_5:4525627-4526289(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129242.1.S1_a_at	A	A1TS	POPTR_0012s03930	POPTR_0012s03930 (11)	scaffold_12:3158255-3158743(-) (11)	NA	NA	NA	AT1G48450.1	Protein of unknown function (DUF760) 	LOC_Os03g50870.1	expressed protein	Medtr4g154570.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129242.1.S1_at	A	A1TS	POPTR_0012s03930	POPTR_0012s03930 (11)	scaffold_12:3158004-3158760(-) (11)	NA	NA	NA	AT1G48450.1	Protein of unknown function (DUF760) 	LOC_Os03g50870.1	expressed protein	Medtr4g154570.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129254.1.S1_at	A	A1TS	POPTR_0019s05670	POPTR_0019s05670 (11)	scaffold_19:6038126-6038426(+) (11)	NA	Q9LJI2	Cation/calcium exchanger 3	AT5G17860.1	calcium exchanger 7 	LOC_Os03g08230.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr7g103490.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.129296.1.S1_at	A	A1TS	POPTR_0005s06180	POPTR_0005s06180 (10)	scaffold_5:4059704-4060170(+) (10)	NA	Q10058	UPF0673 membrane protein C1F5.03c	AT5G67290.1	FAD-dependent oxidoreductase family protein 	LOC_Os07g06080.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr8g087210.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.129301.1.S1_at	A	A1TS	POPTR_0007s13010	POPTR_0007s13010 (11)	scaffold_7:13207186-13207683(+) (11)	NA	O23225	U-box domain-containing protein 5	AT4G36550.1	ARM repeat superfamily protein 	LOC_Os02g47670.2	"bg55, putative, expressed"	Medtr5g020450.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.129307.1.S1_s_at	A	A1TS	POPTR_0001s00390	POPTR_0001s00390 (11)	scaffold_1:301829-303246(+) (11)	NA	Q940Y1	Oxysterol-binding protein-related protein 2A	AT4G22540.1	OSBP(oxysterol binding protein)-related protein 2A 	LOC_Os08g05870.1	"oxysterol-binding protein-related protein 6, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.129323.1.S1_s_at	A	A1TS	POPTR_0004s16580	POPTR_0004s16580 (11)	scaffold_4:17014749-17016346(+) (11)	NA	NA	NA	AT4G39140.5	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129345.1.A1_s_at	A	A1TS	POPTR_0012s06310	POPTR_0012s06310 (11)	scaffold_12:6636023-6636604(-) (11)	NA	P42744	NEDD8-activating enzyme E1 regulatory subunit	AT1G05180.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g60550.3	"ThiF family domain containing protein, putative, expressed"	Medtr4g062400.1	UBA/THIF-type NAD/FAD binding fold 	NA	GO:0003824|catalytic activity	NA
PtpAffx.129413.1.A1_at	A	A1TS	POPTR_0001s20830	POPTR_0001s20830 (10)	scaffold_1:19056973-19057502(+) (10)	NA	Q9LMR3	"Arogenate dehydrogenase 2, chloroplastic"	AT1G15710.1	prephenate dehydrogenase family protein 	LOC_Os06g49505.1	"arogenate dehydrogenase 1, chloroplast precursor, putative, expressed"	Medtr8g122040.1	"Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129455.1.A1_at	A	A1TS	POPTR_0019s14170	POPTR_0019s14170 (10)	scaffold_19:14923323-14923615(-) (10)	NA	O64477	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	AT2G19130.1	S-locus lectin protein kinase family protein 	LOC_Os07g36780.1	"S-domain receptor-like protein kinase, putative, expressed"	Medtr2g103160.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.129461.1.A1_at	A	A1TS	POPTR_0006s16330	POPTR_0006s16330 (10)	scaffold_6:14240716-14241078(-) (10)	NA	Q66GI4	"Pentatricopeptide repeat-containing protein At2g32230, mitochondrial"	AT2G32230.1	proteinaceous RNase P 1 	LOC_Os02g17360.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g159290.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129494.1.S1_at	A	A1TS	POPTR_0010s06780	POPTR_0010s06780 (11)	scaffold_10:8048827-8049849(+) (11)	NA	NA	NA	AT5G43230.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01810.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g39490.3	expressed protein	Medtr1g090380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12950.1.A1_a_at	A	A1TS	POPTR_0002s09160	POPTR_0002s09160 (11)	scaffold_2:6488564-6488791(-) (11)	NA	Q84WN0	"Uncharacterized protein At4g37920, chloroplastic"	AT1G36320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g20110.1	expressed protein	Medtr2g034600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.12950.1.A1_at	A	A1TS	POPTR_0002s09160	POPTR_0002s09160 (11)	scaffold_2:6488544-6489476(-) (11)	NA	Q84WN0	"Uncharacterized protein At4g37920, chloroplastic"	AT1G36320.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g20110.1	expressed protein	Medtr2g034600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129500.1.A1_s_at	A	A1TS	POPTR_0006s26710	POPTR_0006s26710 (10)	scaffold_6:24843554-24843709(+) (10)	NA	A2AR02	Peptidyl-prolyl cis-trans isomerase G	AT4G32420.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr1g013450.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.129511.1.A1_at	A	A1TA	POPTR_0005s26760	POPTR_0005s26760 (11)	scaffold_5:24636326-24636568(+) (11)	NA	P50134	Ornithine decarboxylase	AT3G14390.1	Pyridoxal-dependent decarboxylase family protein 	LOC_Os09g37120.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr3g157420.1	Orn/DAP/Arg decarboxylase 2 	NA	GO:0003824|catalytic activity	NA
PtpAffx.129522.1.A1_at	A	A1TS	POPTR_0006s05210	POPTR_0006s05210 (11)	scaffold_6:3669176-3669612(-) (11)	NA	Q9LVJ7	Nuclear transcription factor Y subunit A-6	AT3G14020.1	"nuclear factor Y, subunit A6 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.129554.1.A1_at	A	A1TS	POPTR_0013s06900	POPTR_0013s06900 (11)	scaffold_13:5604523-5605036(+) (11)	NA	NA	NA	NA	NA	LOC_Os10g43075.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129568.2.A1_a_at	A	A1TS	POPTR_0001s38570	POPTR_0001s38570 (11)	scaffold_1:37773270-37776404(-) (11)	NA	Q9C5J6	tRNA dimethylallyltransferase 9	AT5G20040.1	isopentenyltransferase 9 	LOC_Os06g51350.1	"IPP transferase, putative, expressed"	Medtr4g073150.1	Isopentenyl transferase-like 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.129589.1.A1_at	A	A1TS	POPTR_0005s01420	POPTR_0005s01420 (9)	scaffold_5:935931-936024(+) (9)	NA	Q5R478	AP-3 complex subunit mu-1	AT1G56590.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os05g31780.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g034870.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.129590.1.A1_at	A	A1TS	POPTR_0018s06820	POPTR_0018s06820 (9)	scaffold_18:6873269-6873370(+) (9)	NA	Q8VYZ3	Probable pectinesterase 53	AT5G19730.1	Pectin lyase-like superfamily protein 	LOC_Os01g53990.1	"pectinesterase, putative, expressed"	Medtr4g160050.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.129594.1.S1_at	A	A1TS	POPTR_0011s15460	POPTR_0011s15460 (10)	scaffold_11:17550458-17550902(+) (10)	NA	Q9MAP8	"Probable beta-1,3-galactosyltransferase 6"	AT1G32930.1	Galactosyltransferase family protein 	LOC_Os03g38050.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.129613.1.S1_at	A	A1TS	POPTR_0005s16950	POPTR_0005s16950 (10)	scaffold_5:13950756-13951246(-) (10)	NA	Q9MAH1	TPR repeat-containing thioredoxin TTL1	AT5G65160.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g11920.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g072140.1	Tetratricopeptide-like helical; Thioredoxin-like fold; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129632.1.S1_at	A	A1TS	POPTR_0022s00780	POPTR_0022s00780 (9)	scaffold_22:386599-386898(+) (9)	NA	NA	NA	AT1G58070.1	unknown protein; Has 286 Blast hits to 266 proteins in 81 species: Archae - 2; Bacteria - 25; Metazoa - 90; Fungi - 19; Plants - 78; Viruses - 4; Other Eukaryotes - 68 (source: NCBI BLink). 	LOC_Os11g09040.1	expressed protein	Medtr2g005670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129645.1.S1_at	A	A1TS	POPTR_0005s24790	POPTR_0005s24790 (10)	scaffold_5:23236270-23237580(-) (10)	NA	P04844	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	AT4G21150.3	ribophorin II (RPN2) family protein 	LOC_Os01g68324.2	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0071212|subsynaptic reticulum||GO:0008250|oligosaccharyltransferase complex
PtpAffx.129663.1.S1_at	A	A1MS	POPTR_0009s11100	POPTR_0009s11100 (9)	scaffold_9:9331313-9331848(-) (9)	NA	P24397	Hyoscyamine 6-dioxygenase	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.129707.1.S1_at	A	A1TS	POPTR_0021s00790	POPTR_0021s00790 (10)	scaffold_21:456745-456848(+) (10)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT1G61900.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1). 	LOC_Os07g01240.1	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129707.1.S1_s_at	A	A1TS	POPTR_0021s00790	POPTR_0021s00790 (11)	scaffold_21:458087-458385(+) (11)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT1G61900.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1). 	LOC_Os07g01240.1	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129717.1.S1_s_at	A	A1TS	POPTR_0001s08740	POPTR_0001s08740 (11)	scaffold_1:6677729-6678090(-) (11)	NA	Q9CAN9	Ethylene-responsive transcription factor ERF026	AT5G52020.1	Integrase-type DNA-binding superfamily protein 	LOC_Os01g73770.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr1g129460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.129726.1.S1_a_at	A	A1TS	POPTR_0006s14200	POPTR_0006s14200 (11)	scaffold_6:11517629-11518087(+) (11)	NA	Q5RJV0	"Ubiquinone biosynthesis protein COQ9, mitochondrial"	AT1G19140.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 748 Blast hits to 748 proteins in 260 species: Archae - 0; Bacteria - 218; Metazoa - 126; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). "	LOC_Os03g29180.1	"ubiquinone biosynthesis protein COQ9, mitochondrial precursor, putative, expressed"	Medtr8g132600.1	RpsU-divergently transcribed 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129726.2.S1_at	A	A1MS	POPTR_0006s14200	POPTR_0006s14200 (10)	scaffold_6:11517429-11518055(+) (10)	NA	Q5RJV0	"Ubiquinone biosynthesis protein COQ9, mitochondrial"	AT1G19140.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: COQ9 (InterPro:IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro:IPR012762); Has 748 Blast hits to 748 proteins in 260 species: Archae - 0; Bacteria - 218; Metazoa - 126; Fungi - 101; Plants - 39; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). "	LOC_Os03g29180.1	"ubiquinone biosynthesis protein COQ9, mitochondrial precursor, putative, expressed"	Medtr8g132600.1	RpsU-divergently transcribed 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129727.1.S1_s_at	A	A1TS	POPTR_0011s00640	POPTR_0011s00640 (11)	scaffold_11:289390-289572(-) (11)	NA	Q8C147	Dedicator of cytokinesis protein 8	AT4G16340.1	guanyl-nucleotide exchange factors;GTPase binding;GTP binding 	LOC_Os03g21080.1	"guanine nucleotide exchange factor, putative, expressed"	Medtr8g065690.1	Dedicator of cytokinesis 	NA	GO:0005085|guanyl-nucleotide exchange factor activity||GO:0051020|GTPase binding||GO:0005525|GTP binding	NA
PtpAffx.129732.1.S1_s_at	A	A1TS	POPTR_0005s14560	POPTR_0005s14560 (11)	scaffold_5:11605969-11607543(+) (11)	NA	NA	NA	AT1G27700.1	Syntaxin/t-SNARE family protein 	LOC_Os05g37150.2	"syntaxin 6, N-terminal domain containing protein, expressed"	Medtr1g023580.1	t-snare 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
PtpAffx.129734.1.S1_at	A	A1TS	POPTR_0006s23610	POPTR_0006s23610 (11)	scaffold_6:22322798-22325239(+) (11)	NA	Q40224	Guanine nucleotide-binding protein alpha-1 subunit	AT2G26300.1	G protein alpha subunit 1 	LOC_Os05g26890.1	"G-protein alpha subunit, putative, expressed"	Medtr1g019860.1	"Calcium-binding EF-hand; Plant G-protein, alpha subunit "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.129758.1.S1_s_at	A	A1TS	POPTR_0002s25420	POPTR_0002s25420 (11)	scaffold_2:22489288-22490542(-) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.129776.1.S1_at	A	A1TS	POPTR_0005s03850	POPTR_0005s03850 (11)	scaffold_5:2563723-2564053(-) (11)	NA	O60291	E3 ubiquitin-protein ligase MGRN1	AT3G06140.1	RING/U-box superfamily protein 	LOC_Os03g15000.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129796.1.S1_at	A	A1TS	POPTR_0006s01660	POPTR_0006s01660 (10)	scaffold_6:1020202-1020338(+) (10)	NA	Q8S5M8	Putative yippee-like protein Os10g0369500	AT3G08990.2	Yippee family putative zinc-binding protein 	LOC_Os10g22410.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129871.1.S1_s_at	A	A1TS	POPTR_0003s03100	POPTR_0003s03100 (11)	scaffold_3:3455465-3458001(-) (11)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129898.1.S1_at	A	A2TS	POPTR_0007s02820	POPTR_0007s02820 (11)//POPTR_0995s00210 (11)	scaffold_7:1637238-1637656(-) (11)//scaffold_995:3095-3512(-) (11)	NA	NA	NA	AT2G32280.1	Protein of unknown function (DUF1218) 	LOC_Os07g36110.2	expressed protein	Medtr2g103410.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129936.1.S1_at	A	A1TS	POPTR_0016s01150	POPTR_0016s01150 (11)	scaffold_16:472144-472934(+) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g105300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.12994.1.A1_at	A	A1TS	POPTR_0002s08790	POPTR_0002s08790 (11)	scaffold_2:6182655-6182932(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G38131.1	O-fucosyltransferase family protein 	LOC_Os12g07540.1	"growth regulator related protein, putative, expressed"	Medtr5g065110.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129941.1.S1_s_at	A	A1TS	POPTR_0008s16660	POPTR_0008s16660 (11)	scaffold_8:11205377-11205932(+) (11)	NA	Q7XBH4	Myb-related protein Myb4	AT3G23250.1	myb domain protein 15 	LOC_Os02g41510.1	"MYB family transcription factor, putative, expressed"	Medtr1g042810.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129950.1.S1_s_at	A	A1TS	POPTR_0007s11130	POPTR_0007s11130 (11)	scaffold_7:11404769-11404947(+) (11)	NA	Q9ZQE6	Calmodulin-like protein 1	AT2G15680.1	Calcium-binding EF-hand family protein 	LOC_Os01g72100.1	"OsCML10 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g017520.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129961.1.S1_at	A	A1TS	POPTR_0008s17970	POPTR_0008s17970 (11)	scaffold_8:12065623-12066258(+) (11)	NA	Q9LU93	Mitotic spindle checkpoint protein MAD2	AT3G25980.1	DNA-binding HORMA family protein 	LOC_Os04g40940.1	"mitotic spindle checkpoint protein MAD2, putative, expressed"	Medtr3g103180.1	DNA-binding HORMA 	GO:0007067|mitosis	NA	NA
PtpAffx.129974.1.S1_s_at	A	A1TS	POPTR_0011s11370	POPTR_0011s11370 (11)	scaffold_11:14106455-14106826(+) (11)	NA	Q9M6E8	"9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic"	AT3G14440.1	nine-cis-epoxycarotenoid dioxygenase 3 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.129984.1.S1_s_at	A	A1TS	POPTR_0002s25160	POPTR_0002s25160 (11)	scaffold_2:22348732-22348954(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g045980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130008.1.S1_a_at	A	A2TS	POPTR_0002s05080	POPTR_0002s05080 (11)//POPTR_0005s23450 (11)	scaffold_2:3288109-3288560(+) (11)//scaffold_5:22211203-22211651(-) (11)	NA	Q54W07	Probable serine/threonine-protein kinase BUD32 homolog	AT5G26110.1	Protein kinase superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130008.1.S1_at	A	A1TS	POPTR_0002s05080	POPTR_0002s05080 (11)	scaffold_2:3287736-3289011(+) (11)	NA	Q54W07	Probable serine/threonine-protein kinase BUD32 homolog	AT5G26110.1	Protein kinase superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130008.2.S1_at	A	A1TS	POPTR_0005s23450	POPTR_0005s23450 (11)	scaffold_5:22210752-22211805(-) (11)	NA	Q54W07	Probable serine/threonine-protein kinase BUD32 homolog	AT5G26110.1	Protein kinase superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13003.1.S1_at	A	A1TS	POPTR_0005s10170	POPTR_0005s10170 (9)	scaffold_5:7261485-7261899(-) (9)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT2G17270.1	phosphate transporter 3;3 	LOC_Os09g38100.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr5g024710.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130071.1.S1_at	A	A1TS	POPTR_0006s12790	POPTR_0006s12790 (10)	scaffold_6:9956381-9957426(-) (10)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT3G09830.2	Protein kinase superfamily protein 	LOC_Os02g57420.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr1g076510.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.130100.1.A1_s_at	A	A1TS	POPTR_0009s15710	POPTR_0009s15710 (11)	scaffold_9:12086337-12089222(-) (11)	NA	O93309	Structural maintenance of chromosomes protein 3	AT2G27170.2	Structural maintenance of chromosomes (SMC) family protein 	LOC_Os02g04050.1	"chromosome segregation protein, putative, expressed"	Medtr5g094200.1	"condensin complex component SMC3, related "	GO:0016032|viral reproduction||GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane||GO:0005694|chromosome
PtpAffx.13014.1.S1_a_at	A	A1TS	POPTR_0018s06790	POPTR_0018s06790 (10)	scaffold_18:6827698-6829046(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G29230.1	NAC domain containing protein 75 	LOC_Os01g09550.1	"no apical meristem protein, putative, expressed"	Medtr4g160220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.13016.1.S1_s_at	A	A2TS	POPTR_0005s01380	POPTR_0005s01380 (11)//POPTR_0013s00770 (11)	scaffold_13:397431-398970(+) (11)//scaffold_5:919585-921252(+) (11)	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os01g22870.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
PtpAffx.13016.2.S1_s_at	A	A1TS	POPTR_0006s04570	POPTR_0006s04570 (11)	scaffold_6:3111597-3112533(-) (11)	NA	Q8RXS6	DNA helicase INO80 complex homolog 1	AT3G57300.1	INO80 ortholog 	LOC_Os03g22900.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.130193.1.A1_s_at	A	A1TS	POPTR_0018s00510	POPTR_0018s00510 (11)	scaffold_18:450165-451197(-) (11)	NA	Q94FY7	"Tocopherol cyclase, chloroplastic"	AT4G32770.1	"tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) "	LOC_Os02g17650.1	"tocopherol cyclase, chloroplast precursor, putative, expressed"	AC225517_3.1	"Tocopherol cyclase, chloroplast precursor, putative AC225517.6 12507-17093 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1302.4.A1_at	A	A1TS	POPTR_0014s10440	POPTR_0014s10440 (11)	scaffold_14:7800675-7800997(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130232.1.A1_s_at	A	A1TS	POPTR_0001s01170	POPTR_0001s01170 (11)	scaffold_1:921870-922631(-) (11)	NA	Q9F234	Alpha-glucosidase 2	AT3G23640.2	heteroglycan glucosidase 1 	LOC_Os07g23880.1	"glycosyl hydrolase, family 31, putative, expressed"	Medtr5g026760.1	"Vitamin K-dependent carboxylation/gamma-carboxyglutamic region; Glycoside hydrolase, family 31 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.130241.1.S1_s_at	A	A1TS	POPTR_0007s06620	POPTR_0007s06620 (11)	scaffold_7:5035653-5038172(+) (11)	NA	Q9LV93	ABC transporter F family member 5	AT5G64840.1	general control non-repressible 5 	LOC_Os11g39020.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g144690.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.130260.1.S1_s_at	A	A1TS	POPTR_0005s16110	POPTR_0005s16110 (11)	scaffold_5:12763594-12763948(+) (11)	NA	Q920N2	Biotin--protein ligase	AT2G25710.2	holocarboxylase synthase 1 	LOC_Os02g07040.2	"biotin--protein ligase, putative, expressed"	Medtr3g098110.2	Biotin--acetyl-CoA-carboxylase ligase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0003824|catalytic activity	NA
PtpAffx.130267.1.S1_at	A	A1TS	POPTR_0001s43950	POPTR_0001s43950 (10)	scaffold_1:44360337-44360883(-) (11)	NA	Q8GXT3	Transcription factor bHLH123	AT3G20640.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g42180.1	"ethylene-responsive protein related, putative"	Medtr2g096070.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130278.1.S1_at	A	A1TS	POPTR_0005s23180	POPTR_0005s23180 (11)	scaffold_5:22011749-22012166(+) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G63180.1	TIC-like 	LOC_Os07g38360.2	expressed protein	Medtr1g086320.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1303.1.S1_a_at	A	A1TS	POPTR_0004s08320	POPTR_0004s08320 (11)	scaffold_4:6841074-6841263(+) (11)	POPTR_0017s02620 (8)	Q56Y85	Methionine aminopeptidase 2B	AT3G59990.4	methionine aminopeptidase 2B 	LOC_Os12g43370.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.1303.1.S1_at	A	A1TS	POPTR_0004s08320	POPTR_0004s08320 (11)	scaffold_4:6840213-6841060(+) (11)	POPTR_0017s02620 (6)	Q56Y85	Methionine aminopeptidase 2B	AT3G59990.4	methionine aminopeptidase 2B 	LOC_Os12g43370.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.1303.2.S1_at	A	A1MS	POPTR_0004s08320	POPTR_0004s08320 (11)	scaffold_4:6840965-6841237(+) (11)	NA	Q56Y85	Methionine aminopeptidase 2B	AT3G59990.4	methionine aminopeptidase 2B 	LOC_Os12g43370.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
PtpAffx.130300.1.S1_at	A	A1TS	POPTR_0010s24900	POPTR_0010s24900 (10)	scaffold_10:20860184-20860608(-) (10)	NA	NA	NA	AT5G04840.1	bZIP protein 	LOC_Os02g33560.1	expressed protein	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13031.1.A1_at	A	A1TS	POPTR_0003s17790	POPTR_0003s17790 (11)	scaffold_3:17075937-17076435(+) (11)	NA	Q0V7T5	Probable receptor-like protein kinase At1g80640	AT2G25220.1	Protein kinase superfamily protein 	LOC_Os02g08530.1	"protein kinase family protein, putative, expressed"	Medtr3g137950.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.130313.1.S1_at	A	A1TS	POPTR_0010s14070	POPTR_0010s14070 (9)	scaffold_10:13772267-13772982(+) (10)	NA	Q6DYE4	"Uncharacterized protein At1g26090, chloroplastic"	AT1G26090.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g48130.1	"uncharacterized protein At1g26090, chloroplast precursor, putative, expressed"	Medtr5g069480.1	"Uncharacterized protein At1g26090, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130346.1.S1_at	A	A1TS	POPTR_0008s04320	POPTR_0008s04320 (11)	scaffold_8:2413383-2414988(-) (11)	NA	Q8RWV3	Cyclin-L1-1	AT2G26430.1	arginine-rich cyclin 1 	LOC_Os01g27940.1	"cyclin-L1-1, putative, expressed"	Medtr5g068200.1	"Immunoglobulin/major histocompatibility complex; Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130446.1.S1_at	A	A1TS	POPTR_0017s06520	POPTR_0017s06520 (11)	scaffold_17:4969877-4970314(+) (11)	NA	NA	NA	AT2G32360.1	Ubiquitin-like superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13048.1.S1_a_at	A	A1TS	POPTR_0009s02820	POPTR_0009s02820 (10)	scaffold_9:3575558-3576366(-) (10)	NA	Q64311	Protein N-terminal asparagine amidohydrolase	AT2G44420.1	protein N-terminal asparagine amidohydrolase family protein 	LOC_Os06g41390.2	"N-terminal asparagine amidohydrolase, putative, expressed"	Medtr2g071460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13048.2.S1_a_at	A	A1TS	POPTR_0009s02820	POPTR_0009s02820 (11)	scaffold_9:3577731-3578801(-) (11)	NA	Q64311	Protein N-terminal asparagine amidohydrolase	AT2G44420.1	protein N-terminal asparagine amidohydrolase family protein 	LOC_Os06g41390.2	"N-terminal asparagine amidohydrolase, putative, expressed"	Medtr2g071460.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13051.1.A1_at	A	A1TS	POPTR_0013s07770	POPTR_0013s07770 (11)	scaffold_13:6617268-6617526(+) (11)	NA	A3KPA3	N-acetyltransferase 15	AT5G16800.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g46700.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g007510.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.13051.2.A1_a_at	A	A1TS	POPTR_0013s07770	POPTR_0013s07770 (11)	scaffold_13:6616982-6617181(+) (11)	NA	A3KPA3	N-acetyltransferase 15	AT5G16800.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g46700.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g007510.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.13051.2.A1_at	A	A1MS	POPTR_0013s07770	POPTR_0013s07770 (10)	scaffold_13:6616864-6617199(+) (10)	NA	A3KPA3	N-acetyltransferase 15	AT5G16800.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os02g46700.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g007510.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.130516.1.S1_at	A	A1TS	POPTR_0007s06310	POPTR_0007s06310 (11)	scaffold_7:4469689-4476655(+) (11)	NA	P24465	Cytochrome P450 71A1	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26970.1	"retrotransposon protein, putative, unclassified"	Medtr2g078060.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.130517.1.S1_at	A	A1TS	POPTR_0014s04020	POPTR_0014s04020 (11)	scaffold_14:3194945-3195423(+) (11)	NA	P28493	Pathogenesis-related protein 5	AT1G75030.1	thaumatin-like protein 3 	LOC_Os03g13070.1	thaumatin family domain containing protein	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130540.1.S1_at	A	A1TS	POPTR_0004s04400	POPTR_0004s04400 (11)	scaffold_4:3147395-3147645(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130549.1.S1_at	A	A1MS	POPTR_0004s19420	POPTR_0004s19420 (11)	scaffold_4:19264525-19265078(+) (11)	NA	O23006	LysM domain-containing GPI-anchored protein 2	AT2G17120.1	lysm domain GPI-anchored protein 2 precursor 	LOC_Os09g37600.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	AC235671_7.1	Peptidoglycan-binding LysM AC235671.2 31615-27432 E EGN_Mt090430 200	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.130554.1.S1_at	A	A1TS	POPTR_0005s24540	POPTR_0005s24540 (11)	scaffold_5:23061108-23062287(+) (11)	NA	Q91W34	UPF0420 protein C16orf58 homolog	AT2G31190.2	"Protein of unknown function, DUF647 "	LOC_Os04g43690.1	"DUF647 domain containing protein, putative, expressed"	Medtr4g106950.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130564.1.S1_s_at	A	A1TS	POPTR_0014s00850	POPTR_0014s00850 (11)	scaffold_14:788423-788848(-) (11)	NA	NA	NA	AT3G49800.1	BSD domain-containing protein 	LOC_Os05g43520.2	"BSD, putative, expressed"	Medtr5g015300.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130568.1.S1_at	A	A1TS	POPTR_0004s19510	POPTR_0004s19510 (11)	scaffold_4:19335055-19335233(-) (11)	NA	NA	NA	AT2G27590.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g63950.1	expressed protein	Medtr4g069890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130568.1.S1_s_at	A	A1TS	POPTR_0004s19510	POPTR_0004s19510 (11)	scaffold_4:19333066-19335062(-) (11)	NA	NA	NA	AT2G27590.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g63950.1	expressed protein	Medtr4g069890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130574.1.S1_at	A	A1TS	POPTR_0014s03460	POPTR_0014s03460 (11)	scaffold_14:2786889-2787971(+) (11)	NA	NA	NA	AT5G06430.1	Thioredoxin superfamily protein 	LOC_Os11g38040.1	expressed protein	Medtr1g089640.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13059.1.S1_s_at	A	A1TS	POPTR_0012s06735	POPTR_0012s06735 (11)	scaffold_12:7181705-7182250(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130614.1.S1_s_at	A	A1TS	POPTR_0007s13820	POPTR_0007s13820 (11)	scaffold_7:13848364-13849631(-) (11)	NA	Q9NQE7	Thymus-specific serine protease	AT4G36195.3	Serine carboxypeptidase S28 family protein 	LOC_Os10g36760.1	"OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr8g090320.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.130615.1.S1_at	A	A1TS	POPTR_0012s08870	POPTR_0012s08870 (11)	scaffold_12:9931647-9933870(-) (11)	NA	P82413	"50S ribosomal protein L19, chloroplastic"	AT5G11750.1	Ribosomal protein L19 family protein 	LOC_Os02g11030.1	"50S ribosomal protein L19, chloroplast precursor, putative, expressed"	Medtr5g013420.1	Ribosomal protein L19 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.13062.1.A1_s_at	A	A1TS	POPTR_0018s13070	POPTR_0018s13070 (11)	scaffold_18:13521189-13521681(-) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.13062.4.S1_a_at	A	A2TS	POPTR_0006s06770	POPTR_0018s13070 (11)//POPTR_0006s06770 (11)	scaffold_18:13523641-13523831(-) (11)//scaffold_6:4904886-4905076(-) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.13062.4.S1_at	A	A1TS	POPTR_0006s06770	POPTR_0006s06770 (11)	scaffold_6:4904537-4905087(-) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
PtpAffx.130623.1.S1_at	A	A2TS	POPTR_0012s04670	POPTR_0012s04670 (11)//POPTR_0015s04280 (9)	scaffold_12:4016261-4017624(+) (11)//scaffold_15:4336018-4336742(-) (9)	NA	Q9LV33	Beta-glucosidase 44	AT3G18080.1	B-S glucosidase 44 	LOC_Os01g32364.1	"Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.130633.1.S1_at	A	A1TS	POPTR_0010s00800	POPTR_0010s00800 (11)	scaffold_10:509879-511749(+) (11)	POPTR_0008s23220 (8)	Q9Y4D2	Sn1-specific diacylglycerol lipase alpha	AT4G16070.1	"Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 "	LOC_Os01g20840.1	"lipase class 3 family protein, putative, expressed"	Medtr8g025380.1	"lipase class 3 family protein, related "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.130634.1.S1_at	A	A1TS	POPTR_0002s03290	POPTR_0002s03290 (11)	scaffold_2:2017862-2019466(+) (11)	NA	NA	NA	AT1G19690.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g15660.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g028880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130641.1.S1_s_at	A	A1TS	POPTR_0009s03110	POPTR_0009s03110 (11)	scaffold_9:3799788-3800456(+) (11)	NA	O23826	125 kDa kinesin-related protein	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.130644.1.S1_at	A	A1TS	POPTR_0001s12970	POPTR_0001s12970 (11)	scaffold_1:10057399-10058228(-) (11)	NA	O23627	"Glycyl-tRNA synthetase 1, mitochondrial"	AT1G29880.1	glycyl-tRNA synthetase / glycine--tRNA ligase 	LOC_Os08g42560.1	"tRNA synthetase class II core domain containing protein, expressed"	Medtr3g137760.1	"Glycyl-tRNA synthetase 1, mitochondrial precursor, putative "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.130672.1.S1_at	A	A1TS	POPTR_0001s03110	POPTR_0001s03110 (11)	scaffold_1:2456204-2456636(+) (11)	NA	Q9FJR0	Regulator of nonsense transcripts 1 homolog	AT5G47010.1	"RNA helicase, putative "	LOC_Os07g31340.1	"regulator of nonsense transcripts 1, putative, expressed"	Medtr5g014030.1	"Type III restriction enzyme, res subunit "	"GO:0000184|""nuclear-transcribed mRNA catabolic process, nonsense-mediated decay""||GO:0044265|cellular macromolecule catabolic process"	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0008270|zinc ion binding	GO:0005737|cytoplasm
PtpAffx.130675.1.S1_s_at	A	A1TS	POPTR_0015s10810	POPTR_0015s10810 (11)	scaffold_15:11610329-11610847(-) (11)	NA	Q9BRS2	Serine/threonine-protein kinase RIO1	AT5G37350.1	Serine/threonine-protein kinase Rio1 	LOC_Os07g06820.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr7g107800.1	"Tyrosine protein kinase, active site "	NA	GO:0003824|catalytic activity||GO:0005524|ATP binding	NA
PtpAffx.130675.2.S1_s_at	A	A1TS	POPTR_0015s10810	POPTR_0015s10810 (11)	scaffold_15:11608557-11609700(-) (11)	NA	Q9BRS2	Serine/threonine-protein kinase RIO1	AT5G37350.1	Serine/threonine-protein kinase Rio1 	LOC_Os07g06820.1	"serine/threonine-protein kinase RIO-like, putative, expressed"	Medtr7g107800.1	"Tyrosine protein kinase, active site "	NA	GO:0003824|catalytic activity||GO:0005524|ATP binding	NA
PtpAffx.130676.1.S1_s_at	A	A1TS	POPTR_0019s11080	POPTR_0019s11080 (11)	scaffold_19:12474922-12475181(+) (11)	NA	NA	NA	AT1G14060.1	GCK domain-containing protein 	LOC_Os07g06460.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130684.1.S1_at	A	A1TS	POPTR_0003s18860	POPTR_0003s18860 (9)	scaffold_3:17767851-17768662(+) (9)	NA	NA	NA	AT3G54360.1	zinc ion binding 	LOC_Os01g01420.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1307.1.S1_at	A	A1TS	POPTR_0001s09600	POPTR_0001s09600 (9)	scaffold_1:7305970-7306486(-) (9)	POPTR_0743s00200 (8)	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.130703.1.S1_at	A	A1TS	POPTR_0018s14400	POPTR_0018s14400 (11)	scaffold_18:14615759-14616864(-) (11)	NA	B4SA76	tRNA pseudouridine synthase A	AT5G35400.1	Pseudouridine synthase family protein 	LOC_Os06g45250.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr4g161180.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.130717.1.S1_at	A	A1TS	POPTR_0007s06510	POPTR_0007s06510 (9)	scaffold_7:4893406-4894832(+) (9)	NA	Q9SIZ8	E3 ubiquitin-protein ligase RKP	AT2G22010.1	related to KPC1 	LOC_Os07g43380.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g144940.1	"Zinc finger, RING-type; B302, (SPRY)-like; SPla/RYanodine receptor SPRY "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130766.2.S1_a_at	A	A1TS	POPTR_0001s47510	POPTR_0001s47510 (11)	scaffold_1:47670692-47671555(-) (11)	NA	Q52K82	Probable calcium-binding protein CML21	AT4G26470.1	Calcium-binding EF-hand family protein 	LOC_Os06g40720.1	"EF hand family protein, putative, expressed"	Medtr8g083980.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130782.1.S1_at	A	A1TS	POPTR_0006s04660	POPTR_0006s04660 (9)	scaffold_6:3201001-3203761(+) (9)	NA	Q8RY99	"DNA repair protein recA homolog 2, mitochondrial"	AT3G10140.1	RECA homolog 3 	LOC_Os01g71690.2	"recA protein, expressed"	Medtr7g108080.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130783.2.S1_s_at	A	A6TS	POPTR_0014s03250	POPTR_0014s03280 (11)//POPTR_0014s03320 (11)//POPTR_0014s03330 (11)//POPTR_0014s03250 (11)//POPTR_0014s03260 (11)//POPTR_0014s03290 (10)	scaffold_14:2587024-2587393(+) (11)//scaffold_14:2591083-2591452(+) (11)//scaffold_14:2606820-2607189(+) (11)//scaffold_14:2610009-2610378(+) (11)//scaffold_14:2633589-2633956(+) (11)//scaffold_14:2646621-2646990(+) (10)//scaffold_14:2664343-2664712(+) (11)//scaffold_14:2674601-2674971(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.130783.3.A1_at	A	A3MA	POPTR_0014s03250	POPTR_0014s03280 (10)//POPTR_0014s03250 (10)//POPTR_0014s03290 (9)	scaffold_14:2587280-2587807(-) (10)//scaffold_14:2607076-2610798(-) (10)//scaffold_14:2633843-2634376(-) (11)//scaffold_14:2646877-2647406(-) (9)	POPTR_0014s03320 (8)//POPTR_0014s03260 (8)//POPTR_0014s03330 (7)	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.1308.1.A1_at	A	A1TS	POPTR_0003s08460	POPTR_0003s08460 (11)	scaffold_3:9875550-9876076(-) (11)	NA	Q9FJR0	Regulator of nonsense transcripts 1 homolog	AT5G47010.1	"RNA helicase, putative "	LOC_Os07g31340.1	"regulator of nonsense transcripts 1, putative, expressed"	Medtr5g014030.1	"Type III restriction enzyme, res subunit "	"GO:0000184|""nuclear-transcribed mRNA catabolic process, nonsense-mediated decay""||GO:0044265|cellular macromolecule catabolic process"	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0008270|zinc ion binding	GO:0005737|cytoplasm
PtpAffx.130829.1.S1_at	A	A1TS	POPTR_0009s09780	POPTR_0009s09780 (10)	scaffold_9:8568436-8568861(+) (10)	NA	Q71DJ5	Triacylglycerol lipase 1	AT2G15230.1	lipase 1 	LOC_Os09g01590.1	"triacylglycerol lipase 1 precursor, putative, expressed"	Medtr5g092310.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.130839.1.S1_at	A	A1TS	POPTR_0010s20590	POPTR_0010s20590 (11)	scaffold_10:18111385-18112598(+) (11)	NA	O04015	Delta-1-pyrroline-5-carboxylate synthase	AT3G55610.1	delta 1-pyrroline-5-carboxylate synthase 2 	LOC_Os05g38150.2	"amino acid kinase, putative, expressed"	Medtr3g092110.1	Gamma-glutamyl phosphate reductase GPR; Glutamate 5-kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.130842.1.S1_at	A	A1TS	POPTR_0018s02590	POPTR_0018s02590 (11)	scaffold_18:2345651-2348590(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT4G31820.1	Phototropic-responsive NPH3 family protein 	LOC_Os09g25330.1	"BTBN19 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr1g016830.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.130846.1.S1_at	A	A1TS	POPTR_0018s00700	POPTR_0018s00700 (11)	scaffold_18:609529-610066(-) (11)	NA	Q9C591	Ethylene-responsive transcription factor ERF016	AT5G21960.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g09790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr3g138910.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.130846.2.S1_at	A	A1TS	POPTR_0006s14110	POPTR_0006s14110 (11)	scaffold_6:11415968-11416337(+) (11)	NA	Q9C591	Ethylene-responsive transcription factor ERF016	AT5G21960.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g09717.1	"ethylene-responsive transcription factor, putative"	Medtr3g138910.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.130887.1.S1_at	A	A1TS	POPTR_0002s19900	POPTR_0002s19900 (10)	scaffold_2:15837311-15838594(-) (10)	NA	NA	NA	AT1G02660.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g15000.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.130895.1.S1_at	A	A1TS	POPTR_0006s02420	POPTR_0006s02420 (10)	scaffold_6:1587754-1589321(+) (10)	NA	Q5BJZ6	UPF0586 protein C9orf41 homolog	AT2G32170.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g43560.1	"AGAP007115-PA, putative, expressed"	AC233673_1.1	hypothetical protein AC233673.1 745-2078 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130908.2.A1_at	A	A1TS	POPTR_0010s10020	POPTR_0010s10020 (11)	scaffold_10:10622537-10622999(+) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.130908.2.A1_s_at	A	A1TS	POPTR_0010s10020	POPTR_0010s10020 (11)	scaffold_10:10622610-10622930(+) (11)	NA	P80728	Mavicyanin	AT5G26330.1	Cupredoxin superfamily protein 	LOC_Os03g59280.1	"plastocyanin-like domain containing protein, putative"	Medtr5g006140.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.130908.3.S1_at	A	A1TS	POPTR_0001s10410	POPTR_0001s10410 (11)	scaffold_1:8088860-8089559(+) (11)	NA	Q9T012	High mobility group B protein 13	AT4G11080.1	HMG (high mobility group) box protein 	LOC_Os02g15810.1	"HMG1/2, putative, expressed"	NA	NA	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.13092.1.S1_a_at	A	A1TS	POPTR_0015s06230	POPTR_0015s06230 (11)	scaffold_15:6589252-6589343(+) (11)	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT5G23060.1	calcium sensing receptor 	LOC_Os02g49680.1	"arsenate reductase, putative, expressed"	Medtr8g115590.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13092.1.S1_at	A	A1TS	POPTR_0015s06230	POPTR_0015s06230 (11)	scaffold_15:6587500-6589235(+) (11)	NA	Q9FN48	"Calcium sensing receptor, chloroplastic"	AT5G23060.1	calcium sensing receptor 	LOC_Os02g49680.1	"arsenate reductase, putative, expressed"	Medtr8g115590.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130922.1.S1_s_at	A	A1TS	POPTR_0006s11590	POPTR_0006s11590 (10)	scaffold_6:8805072-8805842(+) (10)	NA	Q2PCF1	Pleiotropic drug resistance protein 2	AT1G66950.1	pleiotropic drug resistance 11 	LOC_Os01g42410.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr7g126900.1	PAK-box/P21-Rho-binding; AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.130948.1.S1_at	A	A1TS	POPTR_0012s14030	POPTR_0012s14030 (9)	scaffold_12:14021752-14022181(+) (9)	NA	Q9SM59	"Phosphoglucomutase, chloroplastic"	AT5G51820.1	phosphoglucomutase 	LOC_Os10g11140.1	"phosphoglucomutase, putative, expressed"	Medtr1g129920.2	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.130962.1.A1_s_at	A	A1TS	POPTR_0009s04690	POPTR_0009s04690 (11)	scaffold_9:4966801-4967012(+) (11)	NA	Q9SS80	"UPF0503 protein At3g09070, chloroplastic"	AT5G58930.1	Protein of unknown function (DUF740) 	LOC_Os05g37800.1	"DUF740 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130966.1.S1_s_at	A	A1TS	POPTR_0001s23210	POPTR_0001s23210 (11)	scaffold_1:22491576-22492080(-) (11)	NA	P44747	Tyrosine-specific transport protein 2	AT5G19500.1	Tryptophan/tyrosine permease 	LOC_Os07g46780.1	"tyrosine-specific transport protein, putative, expressed"	Medtr5g095820.1	Aromatic amino acid permease 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.130974.1.S1_at	A	A1TS	POPTR_0005s14730	POPTR_0005s14730 (9)	scaffold_5:11706159-11706835(-) (9)	NA	C5CG19	Methionyl-tRNA formyltransferase	AT1G66520.1	"formyltransferase, putative "	LOC_Os01g49330.1	"formyl transferase, putative, expressed"	NA	NA	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.130982.1.S1_s_at	A	A1TS	POPTR_0001s44610	POPTR_0001s44610 (11)	scaffold_1:45077357-45077619(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.130992.1.S1_s_at	A	A1TS	POPTR_0004s13480	POPTR_0004s13480 (11)	scaffold_4:13633822-13634994(+) (11)	NA	Q32RS0	Pyruvate dehydrogenase E1 component subunit beta	AT2G34590.1	Transketolase family protein 	LOC_Os12g42230.1	"transketolase, putative, expressed"	Medtr3g115120.1	Bacterial transketolase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.131.1.S1_a_at	A	A2TS	POPTR_0004s21210	POPTR_0004s21210 (11)//POPTR_0009s16490 (11)	scaffold_4:20442604-20442640(+) (11)//scaffold_9:12514749-12514785(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT3G52660.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g009690.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.131.3.S1_a_at	A	A1TS	POPTR_0009s16490	POPTR_0009s16490 (11)	scaffold_9:12515476-12515649(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT4G00830.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g009690.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.131.4.S1_at	A	A1MS	POPTR_0004s21210	POPTR_0004s21210 (11)	scaffold_4:20443045-20443445(+) (11)	NA	O60506	Heterogeneous nuclear ribonucleoprotein Q	AT3G52660.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g04180.4	"RNA recognition motif containing protein, expressed"	Medtr7g009690.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1310.2.A1_a_at	A	A1TS	POPTR_0006s24120	POPTR_0006s24120 (11)	scaffold_6:22789269-22790884(-) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G33080.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g139660.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1310.2.A1_at	A	A1TS	POPTR_0006s24120	POPTR_0006s24120 (11)	scaffold_6:22788946-22791082(-) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G33080.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g09200.1	"AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g139660.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13101.2.A1_at	A	A1TS	POPTR_0010s24840	POPTR_0010s24840 (11)	scaffold_10:20836155-20838160(+) (11)	NA	Q9CAF2	"Nudix hydrolase 26, chloroplastic"	AT3G10620.1	nudix hydrolase homolog 26 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.13101.3.S1_a_at	A	A1TS	POPTR_0008s01880	POPTR_0008s01880 (11)	scaffold_8:905621-907609(+) (11)	NA	Q9CAF2	"Nudix hydrolase 26, chloroplastic"	AT3G10620.1	nudix hydrolase homolog 26 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.131010.1.S1_s_at	A	A1TS	POPTR_0012s14430	POPTR_0012s14430 (10)	scaffold_12:14325610-14326768(-) (10)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G51560.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.13102.1.S1_s_at	A	A1TS	POPTR_0006s15980	POPTR_0006s15980 (11)	scaffold_6:13749069-13749271(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g29710.1	"beta-expansin precursor, putative, expressed"	Medtr3g136440.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13102.2.S1_at	A	A1MS	POPTR_0006s15980	POPTR_0006s15980 (10)	scaffold_6:13748703-13749473(-) (11)	NA	NA	NA	NA	NA	LOC_Os09g29710.1	"beta-expansin precursor, putative, expressed"	Medtr3g136440.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131025.1.S1_s_at	A	A1TS	POPTR_0017s02040	POPTR_0017s02040 (11)	scaffold_17:1493041-1495719(-) (11)	NA	Q8L8W0	ALA-interacting subunit 5	AT1G79450.1	ALA-interacting subunit 5 	LOC_Os03g02830.1	"cell cycle control protein, putative, expressed"	Medtr7g102850.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.131029.1.S1_s_at	A	A1TS	POPTR_0008s12790	POPTR_0008s12790 (11)	scaffold_8:8277936-8279290(-) (11)	NA	P77938	Probable nicotinate-nucleotide pyrophosphorylase [carboxylating]	AT2G01350.1	quinolinate phoshoribosyltransferase 	LOC_Os09g38060.2	"nicotinate-nucleotide pyrophosphorylase, putative, expressed"	NA	NA	GO:0009435|NAD biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0004514|nicotinate-nucleotide diphosphorylase (carboxylating) activity	NA
PtpAffx.131043.1.S1_s_at	A	A1TS	POPTR_0019s11340	POPTR_0019s11340 (11)	scaffold_19:12670315-12671149(-) (11)	NA	Q4V893	Uncharacterized protein KIAA1704 homolog	AT1G65280.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g33800.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g104870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.131044.1.S1_s_at	A	A1TS	POPTR_0001s28320	POPTR_0001s28320 (11)	scaffold_1:27119017-27119502(-) (11)	NA	Q9LFC5	Pentatricopeptide repeat-containing protein At5g01110	AT5G01110.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06910.1	PPR repeat containing protein	Medtr5g097340.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131056.1.S1_s_at	A	A1TS	POPTR_0007s01460	POPTR_0007s01460 (11)	scaffold_7:819632-820536(-) (11)	NA	Q9NU19	TBC1 domain family member 22B	AT2G30710.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g34040.1	"TBC domain containing protein, expressed"	Medtr2g120560.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.131057.1.A1_s_at	A	A1TS	POPTR_0001s40140	POPTR_0001s40140 (11)	scaffold_1:39452870-39453005(-) (11)	NA	NA	NA	AT1G78815.1	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g092170.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131057.2.S1_s_at	A	A1TS	POPTR_0001s40140	POPTR_0001s40140 (11)	scaffold_1:39454734-39454895(-) (11)	NA	NA	NA	AT1G78815.1	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g092170.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131060.1.S1_at	A	A1TS	POPTR_0001s23990	POPTR_0001s23990 (9)	scaffold_1:23373392-23374597(+) (10)	NA	Q9XES1	"Calcium-transporting ATPase 4, endoplasmic reticulum-type"	AT1G07670.1	endomembrane-type CA-ATPase 4 	LOC_Os03g17310.1	"calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed"	Medtr7g120500.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.131073.1.S1_at	A	A1TS	POPTR_0006s29170	POPTR_0006s29170 (11)	scaffold_6:26624794-26627856(+) (11)	NA	NA	NA	AT4G31340.1	myosin heavy chain-related 	LOC_Os08g40790.2	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131074.1.S1_s_at	A	A1TS	POPTR_0015s13940	POPTR_0015s13940 (11)	scaffold_15:13690207-13692579(-) (11)	NA	NA	NA	AT5G51880.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g02730.1	expressed protein	Medtr1g129750.1	"ABR017Cp, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1311.1.A1_at	A	A1TS	POPTR_0013s01620	POPTR_0013s01620 (11)	scaffold_13:919235-919292(+) (11)	NA	Q9M9W3	Serine/threonine-protein phosphatase PP1 isozyme 9	AT3G05580.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os01g24750.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr7g138660.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.13110.1.S1_s_at	A	A1TS	POPTR_0003s03100	POPTR_0003s03100 (11)	scaffold_3:3452538-3453399(-) (11)	NA	O22607	WD-40 repeat-containing protein MSI4	AT2G19520.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os01g51300.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g045840.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131102.1.S1_at	A	A1TS	POPTR_0007s06190	POPTR_0007s06190 (10)	scaffold_7:4357203-4358155(-) (10)	NA	Q940M2	"Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial"	AT4G39660.1	alanine:glyoxylate aminotransferase 2 	LOC_Os03g07570.4	"aminotransferase, putative, expressed"	Medtr4g140630.1	"Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.131105.1.S1_at	A	A1TS	POPTR_0016s06640	POPTR_0016s06640 (11)	scaffold_16:4447664-4447966(+) (11)	NA	Q5IH14	Sucrose-phosphatase 1	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os02g05030.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.131105.1.S1_s_at	A	A2TS	POPTR_0006s21420	POPTR_0016s06640 (11)//POPTR_0006s21420 (11)	scaffold_16:4447214-4448092(+) (11)//scaffold_6:20479321-20480155(+) (11)	NA	Q5IH14	Sucrose-phosphatase 1	AT2G35840.3	Sucrose-6F-phosphate phosphohydrolase family protein 	LOC_Os01g27880.1	"sucrose-phosphatase, putative, expressed"	Medtr1g059590.1	"Sucrose phosphatase, plant and cyanobacteria "	GO:0005986|sucrose biosynthetic process	GO:0050307|sucrose-phosphatase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.131114.3.S1_s_at	A	A1TS	POPTR_0007s10100	POPTR_0007s10100 (11)	scaffold_7:9825918-9827869(+) (11)	NA	Q08467	Casein kinase II subunit alpha-1	AT5G67380.1	casein kinase alpha 1 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr8g099310.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.131142.1.S1_a_at	A	A2TS	POPTR_0002s12420	POPTR_0014s02290 (11)//POPTR_0002s12420 (11)	scaffold_14:1940849-1941105(+) (11)//scaffold_2:9217974-9218230(+) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.131142.1.S1_at	A	A1TS	POPTR_0002s12420	POPTR_0002s12420 (11)	scaffold_2:9217836-9218829(+) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.131148.1.S1_a_at	A	A1TS	POPTR_0010s05740	POPTR_0010s05740 (9)	scaffold_10:7227668-7228054(+) (10)//scaffold_5:6547947-6548333(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131149.1.S1_at	A	A1TS	POPTR_0008s09950	POPTR_0008s09950 (10)	scaffold_8:6160806-6161813(-) (10)	NA	Q5RD67	Solute carrier family 25 member 44	AT5G15640.1	Mitochondrial substrate carrier family protein 	LOC_Os01g22600.1	"mitochondrial carrier protein, putative, expressed"	Medtr2g036920.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13116.1.S1_at	A	A1TS	POPTR_0006s14630	POPTR_0006s14630 (11)	scaffold_6:11989548-11989599(-) (11)	NA	NA	NA	AT2G06520.1	photosystem II subunit X 	NA	NA	Medtr3g139380.1	"ultraviolet-B-repressible protein, putative "	GO:0015979|photosynthesis	NA	GO:0009523|photosystem II
PtpAffx.13117.1.A1_at	A	A1TS	POPTR_0002s01920	POPTR_0002s01920 (11)	scaffold_2:1030580-1031610(+) (11)	NA	NA	NA	AT1G76010.1	Alba DNA/RNA-binding protein 	LOC_Os09g37006.2	"protein of unknown function domain containing protein, expressed"	Medtr3g144390.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.131198.1.S1_at	A	A1TS	POPTR_0010s08200	POPTR_0010s08200 (11)	scaffold_10:9145232-9145776(+) (11)	NA	Q96524	Cryptochrome-2	AT1G04400.1	cryptochrome 2 	LOC_Os02g41550.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr1g042700.1	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.131222.1.S1_at	A	A1TS	POPTR_0007s13060	POPTR_0007s13060 (11)	scaffold_7:13241764-13242302(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G66530.2	Galactose mutarotase-like superfamily protein 	LOC_Os09g15820.1	"aldose 1-epimerase, putative, expressed"	Medtr5g020530.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.131222.1.S1_s_at	A	A1TS	POPTR_0007s13060	POPTR_0007s13060 (11)	scaffold_7:13242299-13242670(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G66530.2	Galactose mutarotase-like superfamily protein 	LOC_Os09g15820.1	"aldose 1-epimerase, putative, expressed"	Medtr5g020530.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.131228.1.S1_at	A	A1TS	POPTR_0009s01050	POPTR_0009s01050 (9)	scaffold_9:1175997-1178378(-) (9)	NA	O04997	"Superoxide dismutase [Cu-Zn], chloroplastic"	AT2G28190.1	copper/zinc superoxide dismutase 2 	LOC_Os08g44770.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr4g076170.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
PtpAffx.131235.1.S1_at	A	A1TS	POPTR_0006s25050	POPTR_0006s25050 (9)	scaffold_6:23496857-23498458(-) (9)	NA	Q8VY07	Clathrin interactor EPSIN 1	AT5G11710.1	ENTH/VHS family protein 	LOC_Os04g51120.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131235.1.S1_s_at	A	A1TS	POPTR_0006s25050	POPTR_0006s25050 (11)	scaffold_6:23496160-23498409(-) (11)	NA	Q8VY07	Clathrin interactor EPSIN 1	AT5G11710.1	ENTH/VHS family protein 	LOC_Os04g51120.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131255.1.S1_at	A	A1TS	POPTR_0010s25440	POPTR_0010s25440 (11)	scaffold_10:21123364-21124754(+) (11)	POPTR_0008s01130 (7)	Q9LES3	ABSCISIC ACID-INSENSITIVE 5-like protein 2	AT3G56850.1	ABA-responsive element binding protein 3 	LOC_Os01g59760.1	"bZIP transcription factor, putative, expressed"	Medtr8g047750.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.131267.1.S1_s_at	A	A1TS	POPTR_0011s05200	POPTR_0011s05200 (11)	scaffold_11:5086226-5086638(+) (11)	NA	P93011	Pentatricopeptide repeat-containing protein At2g33760	AT2G33760.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g08140.1	"pentatricopeptide, putative, expressed"	Medtr7g096840.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131276.1.S1_at	A	A1TS	POPTR_0016s11670	POPTR_0016s11670 (10)	scaffold_16:10880470-10880679(+) (10)	NA	Q9SR77	"Heme-binding-like protein At3g10130, chloroplastic"	AT2G37970.1	SOUL heme-binding family protein 	LOC_Os01g63210.1	"SOUL heme-binding protein, putative, expressed"	Medtr4g016000.1	SOUL heme-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13128.1.S1_at	A	A1TS	POPTR_0010s21790	POPTR_0010s21790 (11)	scaffold_10:18927005-18927991(-) (11)	NA	Q54K56	Beta-hexosaminidase subunit B2	AT3G55260.1	beta-hexosaminidase 1 	LOC_Os05g02510.1	"beta-hexosaminidase precursor, putative, expressed"	Medtr2g080430.1	"Glycoside hydrolase, family 20; ; "	GO:0005975|carbohydrate metabolic process	GO:0004563|beta-N-acetylhexosaminidase activity	NA
PtpAffx.131287.1.S1_at	A	A1TS	POPTR_0001s42650	POPTR_0001s42650 (11)	scaffold_1:42680219-42684132(-) (11)	NA	Q567B1	Ubiquitin thioesterase OTU1	AT1G50670.1	OTU-like cysteine protease family protein 	LOC_Os02g06890.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr5g100030.1	"Ovarian tumour, otubain; Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131317.1.S1_s_at	A	A2TS	POPTR_0012s07540	POPTR_0012s07540 (11)//POPTR_0015s07980 (11)	scaffold_12:8445237-8447567(+) (11)//scaffold_15:9262707-9265145(+) (11)	NA	Q6P2B1	Transportin-3	AT5G62600.1	ARM repeat superfamily protein 	LOC_Os10g33770.1	importin-beta N-terminal domain containing protein	AC233677_6.1	Exportin-1/Importin-beta-like AC233677.2 40883-35967 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.131319.1.A1_s_at	A	A1TS	POPTR_0001s26240	POPTR_0001s26240 (11)	scaffold_1:25295036-25295285(-) (11)	NA	Q94CJ8	Zinc finger CCCH domain-containing protein 55	AT3G21100.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g21140.1	"RNA-binding zinc finger protein, putative, expressed"	Medtr5g008940.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.131325.1.S1_s_at	A	A1TS	POPTR_0004s11800	POPTR_0004s11800 (11)	scaffold_4:10670177-10671403(+) (11)	NA	Q9LLC1	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic"	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	Medtr7g012310.1	Biotin-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131433.1.S1_at	A	A1TS	POPTR_0006s07730	POPTR_0006s07730 (11)	scaffold_6:5633984-5634778(+) (11)	NA	NA	NA	AT5G35330.3	methyl-CPG-binding domain protein 02 	LOC_Os09g32090.1	"methyl-binding domain protein MBD, putative, expressed"	Medtr1g111540.1	"Thymidine kinase; Methyl-CpG binding; Zinc finger, CW-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.131450.1.S1_at	A	A1TS	POPTR_0017s06050	POPTR_0017s06050 (11)	scaffold_17:4691219-4692454(-) (11)	POPTR_0007s02130 (6)	Q84RR0	Probable E3 ubiquitin-protein ligase ARI7	AT2G31510.1	IBR domain-containing protein 	LOC_Os04g41470.1	expressed protein	Medtr2g118110.1	"Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.131455.1.S1_s_at	A	A1TS	POPTR_0003s11510	POPTR_0003s11510 (11)	scaffold_3:12279242-12280073(+) (11)	POPTR_0001s07990 (6)	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
PtpAffx.131467.1.S1_at	A	A1TS	POPTR_0007s06770	POPTR_0007s06770 (9)	scaffold_7:5137320-5137457(+) (9)	NA	Q9SJ12	"Probable ATP synthase 24 kDa subunit, mitochondrial"	AT2G21870.1	copper ion binding;cobalt ion binding;zinc ion binding 	LOC_Os02g03860.1	"mitochondrial ATP synthase precursor, putative, expressed"	Medtr4g141050.1	"Probable ATP synthase 24 kDa subunit, mitochondrial precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131474.1.S1_s_at	A	A1TS	POPTR_0003s16110	POPTR_0003s16110 (11)	scaffold_3:15724680-15725489(-) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr7g020760.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.131475.1.S1_at	A	A1TS	POPTR_0002s25080	POPTR_0002s25080 (9)	scaffold_2:22272497-22272987(+) (9)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT3G25290.2	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr7g046190.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1315.2.S1_a_at	A	A1TS	POPTR_0003s10690	POPTR_0003s10690 (11)	scaffold_3:11620417-11621648(+) (11)	NA	Q924W5	Structural maintenance of chromosomes protein 6	AT5G61460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g03370.1	"MIM, putative, expressed"	Medtr4g080220.1	"structural maintenance of chromosomes, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1315.4.S1_a_at	A	A1TS	POPTR_0003s10690	POPTR_0003s10690 (11)	scaffold_3:11621816-11622180(+) (11)	NA	Q924W5	Structural maintenance of chromosomes protein 6	AT5G61460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g03370.1	"MIM, putative, expressed"	Medtr4g080220.1	"structural maintenance of chromosomes, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131511.1.S1_s_at	A	A1TS	POPTR_0004s11510	POPTR_0004s11510 (11)	scaffold_4:10288602-10289096(+) (11)	NA	Q9S7W5	Transcription factor TCP13	AT3G02150.2	plastid transcription factor 1 	LOC_Os01g55750.3	"TCP family transcription factor, putative, expressed"	Medtr3g036490.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131512.1.S1_at	A	A1TS	POPTR_0010s25730	POPTR_0010s25730 (9)	scaffold_10:21256394-21256457(-) (9)	NA	Q9LU41	"Calcium-transporting ATPase 9, plasma membrane-type"	AT3G21180.1	autoinhibited Ca(2+)-ATPase 9 	LOC_Os04g51610.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.131586.1.S1_at	A	A1TS	POPTR_0003s19410	POPTR_0003s19410 (11)	scaffold_3:18140124-18142751(-) (11)	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr8g043600.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.131589.1.A1_at	A	A1TS	POPTR_0012s07890	POPTR_0012s07890 (11)	scaffold_12:8848384-8848951(-) (11)	NA	Q27GI3	Nucleobase-ascorbate transporter 6	AT5G62890.4	Xanthine/uracil permease family protein 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g125300.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.131598.1.S1_at	A	A1TS	POPTR_0001s21640	POPTR_0001s21640 (11)	scaffold_1:20167475-20171742(+) (11)	NA	NA	NA	AT1G11400.3	partner of Y14-MAGO 	LOC_Os03g15560.1	"wibg, putative, expressed"	Medtr2g007870.1	"Exon junction complex, Pym "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1316.2.S1_s_at	A	A1TS	POPTR_0001s14240	POPTR_0001s14240 (11)	scaffold_1:11177685-11177814(-) (11)	NA	Q944R1	Probable pectate lyase 15	AT4G13710.1	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr7g065150.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13160.1.A1_at	A	A1TS	POPTR_0001s28860	POPTR_0001s28860 (11)	scaffold_1:27635771-27636049(+) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G30150.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131613.1.S1_s_at	A	A1TS	POPTR_0012s05840	POPTR_0012s05840 (11)	scaffold_12:5653441-5655299(+) (11)	NA	Q84M92	Actin-related protein 4	AT1G18450.1	actin-related protein 4 	LOC_Os08g04280.2	"actin, putative, expressed"	Medtr5g075350.3	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.131630.1.S1_at	A	A1TS	POPTR_0006s04370	POPTR_0006s04370 (11)	scaffold_6:2968149-2969815(+) (11)	NA	P74476	Peptide chain release factor 2	AT3G57190.1	"peptide chain release factor, putative "	LOC_Os05g31160.1	"peptide chain release factor 2, putative, expressed"	Medtr1g062640.1	Class I peptide chain release factor; PCRF 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
PtpAffx.13164.2.S1_at	A	A1TS	POPTR_0012s05720	POPTR_0012s05720 (11)	scaffold_12:5514723-5515189(+) (11)	NA	Q869R9	Myb-like protein J	AT1G49010.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr8g073480.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13164.3.S1_at	A	A1TS	POPTR_0001s32730	POPTR_0001s32730 (10)	scaffold_1:31009401-31009913(-) (11)	NA	Q9LIS3	UDP-glucuronate 4-epimerase 6	AT3G23820.1	UDP-D-glucuronate 4-epimerase 6 	LOC_Os08g41440.1	"UDP-glucuronate 4-epimerase, putative, expressed"	Medtr3g105090.1	"NAD-dependent epimerase/dehydratase; TonB box, N-terminal "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.131640.1.A1_at	A	A1TS	POPTR_0005s26980	POPTR_0005s26980 (10)	scaffold_5:24794407-24794909(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131654.1.S1_s_at	A	A1TS	POPTR_0013s06770	POPTR_0013s06770 (11)	scaffold_13:5481809-5483732(-) (11)	NA	P26683	RNA polymerase sigma factor rpoD	AT1G08540.1	RNApolymerase sigma subunit 2 	LOC_Os11g26160.1	"RNA polymerase sigma factor, putative, expressed"	Medtr3g163870.1	"Winged helix repressor DNA-binding; RNA polymerase sigma factor RpoS, proteobacteria; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.131693.1.S1_at	A	A2TS	POPTR_0009s03980	POPTR_0009s03980 (10)//POPTR_0001s25020 (9)	scaffold_1:24283863-24285026(+) (9)//scaffold_9:4554877-4555901(+) (10)	NA	Q9ZW06	Pumilio homolog 2	AT2G29190.2	pumilio 2 	LOC_Os01g62650.1	"pumilio-family RNA binding protein, putative, expressed"	Medtr4g084270.1	Nucleic acid binding NABP 	NA	GO:0003723|RNA binding	NA
PtpAffx.1317.1.A1_at	A	A1TS	POPTR_0003s15800	POPTR_0003s15800 (11)	scaffold_3:15494915-15494981(-) (11)	NA	Q41542	Probable xyloglucan endotransglucosylase/hydrolase	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099560.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.1317.1.A1_x_at	A	A1TS	POPTR_0003s15800	POPTR_0003s15800 (11)	scaffold_3:15494883-15495108(-) (11)	NA	Q41542	Probable xyloglucan endotransglucosylase/hydrolase	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099560.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.131717.1.S1_at	A	A1TS	POPTR_0016s02100	POPTR_0016s02100 (10)	scaffold_16:1012770-1012858(+) (10)	NA	Q7ZUW2	Hypoxia up-regulated protein 1	AT4G16660.1	heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g48110.1	"DnaK family protein, putative, expressed"	Medtr3g068340.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131719.1.S1_at	A	A1TS	POPTR_0014s05780	POPTR_0014s05780 (11)	scaffold_14:4316010-4317486(-) (11)	NA	NA	NA	AT2G45060.1	Uncharacterised conserved protein UCP022280 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131727.1.S1_at	A	A1TS	POPTR_0007s10110	POPTR_0007s10110 (10)	scaffold_7:9835616-9836327(+) (10)	NA	NA	NA	AT2G23093.1	Major facilitator superfamily protein 	LOC_Os08g02190.1	expressed protein	Medtr5g016070.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131750.1.S1_at	A	A1TS	POPTR_0006s03550	POPTR_0006s03550 (10)	scaffold_6:2319598-2320070(+) (10)	NA	O80674	Transcription factor bHLH106	AT2G41130.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr7g106450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.131756.1.S1_at	A	A1TS	POPTR_0010s18680	POPTR_0010s18680 (10)	scaffold_10:16858510-16861701(-) (10)	NA	Q93WI9	Protein HEADING DATE 3A	AT1G65480.1	PEBP (phosphatidylethanolamine-binding protein) family protein 	LOC_Os06g06320.1	"osFTL2  FT-Like2 homologous to Flowering Locus T  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	Medtr7g099820.1	"Protein FLOWERING LOCUS T, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13176.1.A1_a_at	A	A1TS	POPTR_0019s10720	POPTR_0019s10720 (11)	scaffold_19:12218003-12218234(-) (11)	NA	Q9LJM4	Receptor-like protein kinase HAIKU2	AT1G72180.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os01g65650.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr4g041600.1	"Receptor-like protein kinase HAIKU2 precursor, related "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.131760.1.A1_at	A	A1TS	POPTR_0009s10430	POPTR_0009s10430 (10)	scaffold_9:8952854-8953353(+) (10)	NA	Q9LJK1	Glycoprotein 3-alpha-L-fucosyltransferase A	AT3G19280.1	fucosyltransferase 11 	LOC_Os08g36840.1	"glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed"	Medtr4g129820.1	"Glycosyl transferase, family 10 "	GO:0006486|protein amino acid glycosylation	GO:0008417|fucosyltransferase activity	GO:0016020|membrane
PtpAffx.131798.1.S1_at	A	A1TS	POPTR_0001s15990	POPTR_0001s15990 (11)	scaffold_1:12820938-12820973(-) (11)//scaffold_1:12824603-12824638(-) (11)//scaffold_1347:2245-2280(+) (11)	NA	O49432	Polygalacturonase QRT3	AT4G20050.2	Pectin lyase-like superfamily protein 	LOC_Os04g52320.1	"QRT3, putative, expressed"	Medtr4g089990.1	Parallel beta-helix repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131802.1.S1_at	A	A1TS	POPTR_0008s18400	POPTR_0008s18400 (10)	scaffold_8:12370597-12372440(-) (10)	NA	Q9SS90	E3 ubiquitin-protein ligase RGLG1	AT3G01650.1	RING domain ligase1 	LOC_Os01g68060.1	"copine, putative, expressed"	Medtr3g102530.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131809.1.S1_at	A	A1TS	POPTR_0016s02560	POPTR_0016s02560 (11)	scaffold_16:1264926-1265559(+) (11)	NA	Q9M1K3	Probable aquaporin SIP2-1	AT3G56950.2	small and basic intrinsic protein 2;1 	LOC_Os03g20410.1	"aquaporin SIP2-1, putative, expressed"	Medtr7g105100.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13181.1.S1_at	A	A1MS	POPTR_0011s13920	POPTR_0011s13920 (11)	scaffold_11:16541913-16542023(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.13181.1.S1_s_at	A	A1TS	POPTR_0011s13920	POPTR_0011s13920 (11)	scaffold_11:16541469-16541829(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.131810.1.S1_at	A	A1TS	POPTR_0015s10010	POPTR_0015s10010 (11)	scaffold_15:11065425-11066200(+) (11)	NA	Q9AWM9	Ribosome production factor 2 homolog	AT3G23620.1	Ribosomal RNA processing Brix domain protein 	LOC_Os01g33030.1	"Brix domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131812.1.S1_at	A	A1TS	POPTR_0006s15920	POPTR_0006s15920 (11)	scaffold_6:13599766-13600235(+) (11)	NA	NA	NA	AT3G25910.1	Protein of unknown function (DUF1644) 	LOC_Os01g42700.5	expressed protein	Medtr8g119520.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131813.1.S1_at	A	A1TS	POPTR_0001s28180	POPTR_0001s28180 (11)	scaffold_1:26950680-26952817(-) (11)	NA	Q1PFH7	Pentatricopeptide repeat-containing protein At1g62350	AT1G62350.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os03g18620.1	"PPR repeat domain containing protein, putative, expressed"	Medtr1g034630.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131820.1.S1_at	A	A1TS	POPTR_0004s14310	POPTR_0004s14310 (11)	scaffold_4:14758282-14759761(-) (11)	NA	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr5g099260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.131822.1.S1_s_at	A	A1TS	POPTR_0015s08960	POPTR_0015s08960 (11)	scaffold_15:10307452-10307663(+) (11)	NA	O00566	U3 small nucleolar ribonucleoprotein protein MPP10	AT5G66540.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os11g04200.1	"M phase phosphoprotein 10, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131828.1.S1_at	A	A1TS	POPTR_0006s19860	POPTR_0006s19860 (10)	scaffold_6:18876650-18877135(+) (10)	NA	Q9ZUH3	Probable purine permease 5	AT2G24220.2	purine permease 5 	LOC_Os09g38510.1	"purine permease, putative, expressed"	Medtr2g018910.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.131835.1.S1_at	A	A1TS	POPTR_0009s16140	POPTR_0009s16140 (11)	scaffold_9:12342504-12343015(+) (11)	NA	Q9SEA0	"Capsanthin/capsorubin synthase, chromoplast"	AT3G10230.1	lycopene cyclase 	LOC_Os02g09750.1	"lycopene beta cyclase, chloroplast precursor, putative, expressed"	Medtr2g107590.1	Lycopene beta and epsilon cyclase 	GO:0016117|carotenoid biosynthetic process	"GO:0016705|""oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"""	NA
PtpAffx.131847.1.S1_at	A	A1TS	POPTR_0013s07150	POPTR_0013s07150 (11)	scaffold_13:5876945-5877407(+) (11)	NA	P38935	DNA-binding protein SMUBP-2	AT5G35970.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g04440.1	"DNA-binding protein, putative, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131848.1.S1_at	A	A1TS	POPTR_0001s13420	POPTR_0001s13420 (11)	scaffold_1:10507486-10508560(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G13160.1	Protein kinase superfamily protein 	LOC_Os02g30900.1	"protein kinase domain containing protein, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.131853.1.S1_s_at	A	A1TS	POPTR_0003s13290	POPTR_0003s13290 (11)	scaffold_3:13673030-13673437(+) (11)	NA	NA	NA	AT1G64050.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os02g16600.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131881.1.S1_at	A	A1TS	POPTR_0002s08470	POPTR_0002s08470 (10)	scaffold_2:5905933-5911148(-) (10)	NA	Q5F3V3	Sister chromatid cohesion protein PDS5 homolog A	AT1G77600.2	ARM repeat superfamily protein 	LOC_Os01g64900.1	"HEAT, putative, expressed"	Medtr2g032740.1	"HEAT, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131887.1.A1_at	A	A1TS	POPTR_0018s04970	POPTR_0018s04970 (9)	scaffold_18:4414986-4415491(+) (9)	NA	Q92346	Uncharacterized protein C6G9.01c	AT5G11760.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1764, eukaryotic (InterPro:IPR013885); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os03g49485.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131888.1.S1_s_at	A	A1TS	POPTR_0008s09330	POPTR_0008s09330 (11)	scaffold_8:5772687-5773851(-) (11)	NA	Q9LMG8	Putative SNAP25 homologous protein SNAP30	AT1G13890.1	soluble N-ethylmaleimide-sensitive factor adaptor protein 30 	LOC_Os02g32740.1	"SNARE domain containing protein, putative, expressed"	Medtr5g046670.1	Target SNARE coiled-coil region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131904.1.S1_s_at	A	A1TS	POPTR_0005s23250	POPTR_0005s23250 (11)	scaffold_5:22078149-22078631(-) (11)	NA	Q4P4G8	UPF0396 protein UM04995	AT4G02720.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g28220.1	"NFKB, putative, expressed"	AC235567_24.1	Protein of unknown function DUF926 AC235567.1 81779-83332 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131927.1.S1_at	A	A1TS	POPTR_0001s35620	POPTR_0001s35620 (9)	scaffold_1:33957284-33957997(-) (9)	NA	Q9LY84	GDSL esterase/lipase At5g14450	AT5G14450.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.131941.1.S1_at	A	A1TS	POPTR_0013s13890	POPTR_0013s13890 (9)	scaffold_13:14218308-14218772(-) (9)	NA	Q0WUU6	Probable polyol transporter 4	AT2G20780.1	Major facilitator superfamily protein 	LOC_Os04g44750.1	"transporter family protein, putative, expressed"	Medtr6g104300.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.131946.1.S1_s_at	A	A2TS	POPTR_0004s15960	POPTR_0004s15960 (11)//POPTR_0004s15900 (9)	scaffold_4:16413117-16413554(+) (9)//scaffold_4:16446880-16447292(+) (11)	NA	Q8VZ80	Polyol transporter 5	AT3G18830.1	polyol/monosaccharide transporter 5 	LOC_Os07g39350.1	"transporter family protein, putative, expressed"	Medtr3g159730.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.131949.1.S1_at	A	A1TS	POPTR_0014s10680	POPTR_0014s10680 (9)	scaffold_14:7949616-7949848(-) (9)	NA	Q8LPH6	Transcription factor MYB86	AT1G09540.1	myb domain protein 61 	LOC_Os05g04820.1	"MYB family transcription factor, putative, expressed"	Medtr7g134240.1	"MYB2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131971.1.S1_at	A	A1MS	POPTR_0001s05150	POPTR_0001s05150 (10)	scaffold_1:3950515-3950956(-) (10)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.2	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.131988.1.S1_at	A	A1TS	POPTR_0013s13440	POPTR_0013s13440 (11)	scaffold_13:13919539-13919583(+) (11)	NA	Q8GY87	Probable ubiquitin-conjugating enzyme E2 26	AT1G53025.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.131988.1.S1_s_at	A	A1TS	POPTR_0013s13440	POPTR_0013s13440 (11)	scaffold_13:13920934-13921297(+) (11)	NA	Q8GY87	Probable ubiquitin-conjugating enzyme E2 26	AT1G53025.1	Ubiquitin-conjugating enzyme family protein 	LOC_Os05g48380.1	"ubiquitin-conjugating enzyme domain containing protein, expressed"	Medtr8g070730.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.131999.1.S1_at	A	A1TS	POPTR_0019s10430	POPTR_0019s10430 (10)	scaffold_19:12009466-12009753(+) (10)	NA	Q9LQ28	Ethylene-responsive transcription factor ERF022	AT1G33760.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g36640.1	"dehydration-responsive element-binding protein, putative"	Medtr5g008580.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.13200.1.S1_at	A	A1MS	POPTR_0010s00430	POPTR_0010s00430 (10)	scaffold_10:205924-206210(+) (10)	NA	Q9LRP1	Novel plant SNARE 13	AT3G17440.1	novel plant snare 13 	LOC_Os03g25390.1	"novel plant SNARE 11, putative, expressed"	Medtr8g134080.1	Target SNARE coiled-coil region; Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13201.1.S1_at	A	A1TS	POPTR_0012s13160	POPTR_0012s13160 (11)	scaffold_12:13436810-13437208(+) (11)	NA	NA	NA	AT5G23760.1	Copper transport protein family 	LOC_Os10g36200.2	"heavy metal-associated domain containing protein, expressed"	AC235674_17.1	"heavy-metal-associated domain-containing protein, putative AC235674.1 87926-88304 E EGN_Mt090430 200"	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.132026.1.A1_at	A	A1TS	POPTR_0007s10880	POPTR_0007s10880 (11)	scaffold_7:11065589-11066062(-) (11)	NA	O48653	DNA polymerase alpha catalytic subunit	AT5G67100.1	DNA-directed DNA polymerases 	LOC_Os01g64820.1	"POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed"	Medtr5g017000.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0001882|nucleoside binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	GO:0005634|nucleus
PtpAffx.132026.1.A1_s_at	A	A1TS	POPTR_0007s10880	POPTR_0007s10880 (11)	scaffold_7:11065813-11066266(-) (11)	NA	O48653	DNA polymerase alpha catalytic subunit	AT5G67100.1	DNA-directed DNA polymerases 	LOC_Os01g64820.1	"POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed"	Medtr5g017000.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0001882|nucleoside binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	GO:0005634|nucleus
PtpAffx.132029.1.A1_at	A	A1MA	POPTR_0019s12860	POPTR_0019s12860 (10)	scaffold_104:9906-10171(+) (10)//scaffold_19:13867827-13868092(-) (10)//scaffold_2238:1454-1719(+) (10)	NA	Q9FZB8	Probable LRR receptor-like serine/threonine-protein kinase At1g51810	AT4G29990.1	Leucine-rich repeat transmembrane protein kinase protein 	LOC_Os05g44930.1	"receptor-like protein kinase, putative, expressed"	Medtr8g016230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.132056.1.A1_s_at	A	A1TS	POPTR_0001s35160	POPTR_0001s35160 (11)	scaffold_1:33415756-33416243(-) (11)	NA	Q9LXE5	DNA (cytosine-5)-methyltransferase DRM1	AT5G15380.1	domains rearranged methylase 1 	LOC_Os03g02010.2	"DNA methyltransferase protein, putative, expressed"	Medtr5g019320.1	C-5 cytosine-specific DNA methylase; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132059.1.A1_at	A	A1TS	POPTR_0002s03290	POPTR_0002s03290 (11)	scaffold_2:2019959-2020742(+) (11)	NA	NA	NA	AT1G19690.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g15660.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr1g028880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132065.1.A1_at	A	A1TS	POPTR_0006s23930	POPTR_0006s23930 (11)	scaffold_6:22643230-22643789(-) (11)	NA	NA	NA	AT3G13980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). 	LOC_Os03g07920.1	expressed protein	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132065.2.A1_a_at	A	A2TS	POPTR_0006s23930	POPTR_0006s23930 (11)//POPTR_0018s05500 (11)	scaffold_18:5107769-5108130(+) (11)//scaffold_6:22643511-22643866(-) (11)	NA	NA	NA	AT3G13980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). 	LOC_Os03g07920.1	expressed protein	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132065.2.A1_at	A	A1TS	POPTR_0018s05500	POPTR_0018s05500 (11)	scaffold_18:5107846-5108272(+) (11)	NA	NA	NA	AT1G54200.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13980.1); Has 1084 Blast hits to 581 proteins in 136 species: Archae - 0; Bacteria - 72; Metazoa - 212; Fungi - 78; Plants - 102; Viruses - 0; Other Eukaryotes - 620 (source: NCBI BLink). 	NA	NA	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132068.1.A1_at	A	A1MS	POPTR_0008s08980	POPTR_0008s08980 (11)	scaffold_8:5569703-5569809(+) (11)	NA	Q6R8G0	Phosphate transporter PHO1 homolog 10	AT1G69480.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.132068.1.A1_s_at	A	A1TS	POPTR_0008s08980	POPTR_0008s08980 (11)	scaffold_8:5569463-5569712(+) (11)	NA	Q6R8G0	Phosphate transporter PHO1 homolog 10	AT1G69480.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os01g02000.1	"phosphate transporter 1, putative, expressed"	Medtr7g010610.1	"SPX, N-terminal; EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.132071.1.S1_at	A	A1TS	POPTR_0011s09560	POPTR_0011s09560 (11)	scaffold_11:11898247-11899182(-) (11)	NA	NA	NA	AT4G26630.2	DEK domain-containing chromatin associated protein 	LOC_Os03g40010.1	"DEK C terminal domain containing protein, expressed"	Medtr5g103320.1	DEK C terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132085.1.A1_at	A	A1TS	POPTR_0005s20190	POPTR_0005s20190 (9)	scaffold_5:19237374-19237804(+) (11)	NA	Q6MEG4	Ribosomal RNA small subunit methyltransferase H	AT5G10910.1	mraW methylase family protein 	LOC_Os02g04500.2	"S-adenosyl-L-methionine-dependent methyltransferase mraW, putative, expressed"	NA	NA	NA	GO:0008168|methyltransferase activity	NA
PtpAffx.132097.1.A1_at	A	A1TS	POPTR_0005s15220	POPTR_0005s15220 (11)	scaffold_5:11987647-11987995(+) (11)	NA	Q9ZDC7	Putative glutamine amidotransferase-like protein RP404	AT5G38200.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os01g04620.3	"transposon protein, putative, unclassified, expressed"	Medtr7g093720.1	Peptidase C26 	GO:0006541|glutamine metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.1321.1.S1_a_at	A	A2TS	POPTR_0007s02360	POPTR_0017s06380 (11)//POPTR_0007s02360 (11)	scaffold_17:4894090-4895696(+) (11)//scaffold_7:1390895-1391514(+) (11)	NA	Q9DCQ3	Vesicle transport protein GOT1A	AT5G01430.2	Got1/Sft2-like vescicle transport protein family 	LOC_Os03g11100.1	"vesicle transport protein GOT1B, putative, expressed"	Medtr5g096590.1	Got1-like protein 	GO:0016192|vesicle-mediated transport	NA	NA
PtpAffx.1321.2.S1_a_at	A	A1TS	POPTR_0007s02360	POPTR_0007s02360 (11)	scaffold_7:1390913-1391765(+) (11)	NA	Q9DCQ3	Vesicle transport protein GOT1A	AT5G01430.2	Got1/Sft2-like vescicle transport protein family 	LOC_Os03g11100.1	"vesicle transport protein GOT1B, putative, expressed"	Medtr5g096590.1	Got1-like protein 	GO:0016192|vesicle-mediated transport	NA	NA
PtpAffx.132115.1.A1_at	A	A1TS	POPTR_0016s14610	POPTR_0016s14610 (10)	scaffold_16:13780791-13781258(-) (10)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g60330.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g083650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.13213.1.A1_at	A	A1TS	POPTR_0009s11820	POPTR_0009s11820 (11)	scaffold_9:9733068-9734114(-) (11)	NA	P93398	Guanine nucleotide-binding protein subunit beta-2	AT4G34460.1	GTP binding protein beta 1 	LOC_Os03g46650.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g159480.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132141.1.S1_at	A	A1TS	POPTR_0010s17700	POPTR_0010s17700 (9)	scaffold_10:16185017-16185124(-) (9)	NA	NA	NA	AT4G33540.1	metallo-beta-lactamase family protein 	LOC_Os02g58270.1	"metallo-beta-lactamase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132154.1.A1_s_at	A	A1TS	POPTR_0015s07370	POPTR_0015s07370 (11)	scaffold_15:8536037-8536440(-) (11)	NA	Q9D853	Methyltransferase-like protein 10	AT1G66680.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g03090.1	"methyltransferase, putative, expressed"	Medtr7g094110.1	Methyltransferase type 12 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.132157.1.A1_at	A	A1TS	POPTR_0004s20700	POPTR_0004s20700 (9)	scaffold_4:20136509-20136995(-) (9)	NA	Q8K9U9	Bifunctional aspartokinase/homoserine dehydrogenase	AT5G21060.1	Glyceraldehyde-3-phosphate dehydrogenase-like family protein 	LOC_Os11g03470.3	"bifunctional aspartokinase/homoserine dehydrogenase, putative, expressed"	Medtr3g111270.1	Homoserine dehydrogenase 	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.132201.1.A1_at	A	A1TS	POPTR_0001s30210	POPTR_0001s30210 (10)	scaffold_1:28741595-28743090(+) (10)	NA	A9A3L9	Ribosomal RNA large subunit methyltransferase N	AT3G19630.1	Radical SAM superfamily protein 	LOC_Os03g10520.1	"radical SAM enzyme, putative, expressed"	Medtr5g005360.1	Conserved hypothetical protein 48; Radical SAM 	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.132210.1.A1_at	A	A1TS	POPTR_0017s02840	POPTR_0017s02840 (11)	scaffold_17:2040654-2040859(+) (11)	NA	NA	NA	AT5G16610.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g12120.1	"no apical meristem protein, putative, expressed"	Medtr5g085900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132216.1.A1_at	A	A1TS	POPTR_0002s12650	POPTR_0002s12650 (11)	scaffold_2:9440472-9440990(+) (11)	NA	NA	NA	AT3G49180.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g22534.4	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g039650.1	"WD repeat-containing protein 18, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132216.2.A1_at	A	A1TS	POPTR_0014s02710	POPTR_0014s02710 (9)	scaffold_14:2252502-2253146(+) (9)	NA	Q3SZD4	WD repeat-containing protein 18	AT3G49180.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g22534.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g015120.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132231.1.A1_at	A	A1TS	POPTR_0003s13480	POPTR_0003s13480 (10)	scaffold_3:13861595-13863331(+) (11)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT5G41620.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os02g15980.1	expressed protein	Medtr5g009870.1	"Uncharacterized protein At5g41620, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132235.1.A1_at	A	A1TS	POPTR_0002s00660	POPTR_0002s00660 (10)	scaffold_2:293094-293357(-) (10)	NA	Q4R7R1	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0006694|steroid biosynthetic process||GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity	NA
PtpAffx.132254.1.S1_at	A	A1TS	POPTR_0008s14600	POPTR_0008s14600 (9)	scaffold_8:9687539-9688238(-) (11)	NA	P42751	Cyclin-D1-1	AT1G70210.1	CYCLIN D1;1 	LOC_Os08g32540.1	"cyclin, putative, expressed"	Medtr5g036580.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.13229.2.S1_at	A	A1TS	POPTR_0018s08300	POPTR_0018s08300 (11)	scaffold_18:9201231-9201925(+) (11)	NA	Q9C5K8	Protein TIFY 3B	AT5G20900.1	jasmonate-zim-domain protein 12 	LOC_Os04g55920.2	"zinc-finger protein, putative, expressed"	Medtr2g052350.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13229.3.A1_at	A	A1TS	POPTR_0006s23390	POPTR_0006s23390 (10)	scaffold_6:22129442-22129692(+) (10)	NA	Q9C5K8	Protein TIFY 3B	AT5G20900.1	jasmonate-zim-domain protein 12 	LOC_Os04g55920.2	"zinc-finger protein, putative, expressed"	Medtr2g052350.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132297.1.A1_at	A	A1TS	POPTR_0002s17000	POPTR_0002s17000 (9)	scaffold_2:12764056-12764191(+) (9)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132322.1.A1_a_at	A	A2TS	POPTR_0001s41040	POPTR_0001s41040 (11)//POPTR_0011s12010 (11)	scaffold_1:40684088-40684691(-) (11)//scaffold_11:14796365-14796930(+) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132322.1.A1_at	A	A1TS	POPTR_0001s41040	POPTR_0001s41040 (11)	scaffold_1:40684032-40684782(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132322.2.A1_at	A	A1TS	POPTR_0011s12010	POPTR_0011s12010 (11)	scaffold_11:14796613-14797033(+) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.2	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132329.2.A1_a_at	A	A1TS	POPTR_0006s03890	POPTR_0006s03890 (11)	scaffold_6:2604663-2604935(-) (11)	NA	Q10KY3	Calcium/calmodulin-dependent serine/threonine-protein kinase 1	AT2G41140.1	CDPK-related kinase 1 	LOC_Os07g44710.1	"CAMK_CAMK_like.36 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr7g106490.1	Protein kinase; EF-Hand type 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132333.1.A1_at	A	A1TS	POPTR_0010s04470	POPTR_0010s04470 (9)	scaffold_10:5561790-5562093(+) (9)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G69910.1	Protein kinase superfamily protein 	LOC_Os03g58750.1	"protein kinase domain containing protein, expressed"	Medtr5g038490.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132345.1.A1_s_at	A	A1TS	POPTR_0004s14080	POPTR_0004s14080 (11)	scaffold_4:14566435-14568299(-) (11)	NA	Q38772	Cell division control protein 2 homolog A	AT3G48750.1	cell division control 2 	LOC_Os03g02680.2	"cyclin-dependent kinase A-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132367.1.A1_at	A	A1TS	POPTR_0014s08800	POPTR_0014s08800 (11)	scaffold_14:6515018-6515153(+) (11)	NA	Q8S8M5	Protein ABIL1	AT2G46225.1	ABI-1-like 1 	LOC_Os01g43420.1	expressed protein	Medtr7g143400.1	"Protein ABIL2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132381.1.A1_at	A	A1TS	POPTR_0008s03660	POPTR_0008s03660 (11)	scaffold_8:1988869-1989340(-) (11)	NA	Q9LTC0	Probable receptor-like protein kinase At5g47070	AT3G09830.2	Protein kinase superfamily protein 	LOC_Os02g57420.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr1g076510.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.132383.1.A1_s_at	A	A1TS	POPTR_0006s13670	POPTR_0006s13670 (11)	scaffold_6:10898989-10899366(+) (11)	NA	Q43062	Pectinesterase/pectinesterase inhibitor PPE8B	AT4G33220.1	pectin methylesterase 44 	LOC_Os08g34900.1	"pectinesterase, putative, expressed"	Medtr2g052320.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.132389.1.A1_s_at	A	A1TS	POPTR_0001s30900	POPTR_0001s30900 (11)	scaffold_1:29317812-29318256(+) (11)	NA	Q2N5X0	Kynurenine formamidase	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132389.2.S1_s_at	A	A1TS	POPTR_0001s30900	POPTR_0001s30900 (11)	scaffold_1:29315471-29316604(+) (11)	NA	Q2N5X0	Kynurenine formamidase	AT4G35220.1	Cyclase family protein 	LOC_Os08g23100.2	"cyclase family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132398.1.A1_at	A	A1TS	POPTR_0005s17760	POPTR_0005s17760 (10)	scaffold_5:15490856-15491058(-) (10)	NA	NA	NA	AT5G49710.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g54080.2	expressed protein	Medtr5g074990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132407.2.A1_a_at	A	A1TS	POPTR_0016s00320	POPTR_0016s00320 (11)	scaffold_16:51755-51910(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT3G24120.1	Homeodomain-like superfamily protein 	LOC_Os08g25799.1	"Myb transcription factor, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132417.1.A1_at	A	A1TS	POPTR_0012s10930	POPTR_0012s10930 (11)	scaffold_12:11589905-11591016(-) (11)	NA	Q6TNS2	p21-activated protein kinase-interacting protein 1-like	AT1G65030.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g42150.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g056250.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132467.1.S1_s_at	A	A2TS	POPTR_0005s05450	POPTR_0005s05450 (11)//POPTR_0013s03790 (11)	scaffold_13:2448023-2448362(-) (11)//scaffold_5:3608357-3608696(-) (11)	NA	A2Z7B3	"GDP-mannose 3,5-epimerase 1"	AT5G28840.2	"GDP-D-mannose 3',5'-epimerase "	LOC_Os10g28200.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr7g140940.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.132468.1.S1_s_at	A	A2TS	POPTR_0006s20580	POPTR_0016s04800 (11)//POPTR_0006s20580 (11)	scaffold_16:2878733-2879054(-) (11)//scaffold_6:19603247-19603573(+) (11)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os09g10710.2	"R-interacting factor 1, putative, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132468.2.S1_at	A	A1TS	POPTR_0006s20580	POPTR_0006s20580 (10)	scaffold_6:19602403-19603721(+) (10)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os09g10710.2	"R-interacting factor 1, putative, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132472.1.S1_at	A	A1TS	POPTR_0001s34640	POPTR_0001s34640 (10)	scaffold_1:32877936-32879098(-) (10)	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.132474.1.S1_at	A	A1TS	POPTR_0001s07900	POPTR_0001s07900 (11)	scaffold_1:5986619-5990906(-) (11)	NA	Q8MJJ1	Maspardin	AT4G12230.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g08840.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g106940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132481.1.S1_at	A	A1MS	POPTR_0013s13900	POPTR_0013s13900 (11)	scaffold_13:14225855-14226375(+) (11)	NA	Q91YR7	Pre-mRNA-processing factor 6	AT4G03430.1	pre-mRNA splicing factor-related 	LOC_Os10g35550.1	"pre-mRNA-processing factor 6, putative, expressed"	Medtr1g013230.1	"PRP1 splicing factor, N-terminal "	"GO:0044260|cellular macromolecule metabolic process||GO:0000398|""nuclear mRNA splicing, via spliceosome"""	NA	GO:0005634|nucleus
PtpAffx.1325.1.S1_at	A	A1TS	POPTR_0021s00790	POPTR_0021s00790 (9)	scaffold_21:460561-461586(+) (9)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT1G61900.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1). 	LOC_Os07g01240.1	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13251.1.S1_at	A	A1TS	POPTR_0012s10330	POPTR_0012s10330 (11)	scaffold_12:11143200-11143834(-) (11)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os11g43820.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr3g150820.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132513.1.S1_at	A	A1MS	POPTR_0006s20720	POPTR_0006s20720 (11)	scaffold_6:19706721-19707847(+) (11)	NA	P93740	"Nudix hydrolase 23, chloroplastic"	AT2G42070.1	nudix hydrolase homolog 23 	LOC_Os09g38040.1	"hydrolase, NUDIX family protein, expressed"	Medtr7g111980.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.132556.1.S1_at	A	A1TS	POPTR_0009s16660	POPTR_0009s16660 (11)	scaffold_9:12608958-12609791(+) (11)	NA	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.1	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.132590.1.S1_at	A	A1TS	POPTR_0003s15390	POPTR_0003s15390 (11)	scaffold_3:15177776-15181072(-) (11)	NA	Q9XI84	"Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT4G20130.1	plastid transcriptionally active 14 	LOC_Os05g50980.1	"SET domain containing protein, expressed"	Medtr4g089950.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132592.1.S1_at	A	A1TS	POPTR_0009s14350	POPTR_0009s14350 (9)	scaffold_9:11250098-11250726(+) (9)	NA	Q9SVE5	Expansin-like A2	AT4G38400.1	expansin-like A2 	LOC_Os03g04020.1	"expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132598.1.S1_s_at	A	A1TS	POPTR_0002s11270	POPTR_0002s11270 (11)	scaffold_2:8337395-8338014(+) (11)	NA	P92934	Amino acid permease 6	AT5G49630.1	amino acid permease 6 	LOC_Os07g04180.1	"amino acid transporter, putative, expressed"	Medtr3g127950.1	Aldo/keto reductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132606.1.S1_at	A	A1TS	POPTR_0001s28510	POPTR_0001s28510 (11)	scaffold_1:27277159-27277563(+) (11)	NA	O80871	Probable protein phosphatase 2C 25	AT2G30020.1	Protein phosphatase 2C family protein 	LOC_Os03g18150.1	"protein phosphatase 2C, putative, expressed"	Medtr5g079830.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132626.1.S1_s_at	A	A1TS	POPTR_0013s12230	POPTR_0013s12230 (11)	scaffold_13:12855268-12856180(+) (11)	NA	NA	NA	AT2G31130.1	unknown protein; Has 116 Blast hits to 113 proteins in 44 species: Archae - 0; Bacteria - 3; Metazoa - 21; Fungi - 2; Plants - 40; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). 	NA	NA	Medtr4g109560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132628.1.S1_s_at	A	A1TS	POPTR_0002s17010	POPTR_0002s17010 (11)	scaffold_2:12774990-12776245(-) (11)	NA	Q9SKD9	Probable WRKY transcription factor 46	AT2G46400.1	WRKY DNA-binding protein 46 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.132656.1.A1_at	A	A1TS	POPTR_0011s14170	POPTR_0011s14170 (11)	scaffold_11:16682145-16682675(-) (11)	NA	Q67YE6	Zinc finger AN1 domain-containing stress-associated protein 12	AT3G28210.1	zinc finger (AN1-like) family protein 	LOC_Os09g21710.1	"AN1-like zinc finger domain containing protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.132676.1.S1_at	A	A1TS	POPTR_0014s08420	POPTR_0014s08420 (11)	scaffold_14:6260587-6261208(+) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT4G00290.1	Mechanosensitive ion channel protein 	LOC_Os04g48940.2	"uncharacterized mscS family protein, putative, expressed"	AC235567_81.1	MscS Mechanosensitive ion channel AC235567.1 293100-287373 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.132676.1.S1_s_at	A	A2TS	POPTR_0002s16360	POPTR_0014s08420 (11)//POPTR_0002s16360 (11)	scaffold_14:6260664-6262378(+) (11)//scaffold_2:12244154-12245302(+) (11)	NA	P0AEB5	MscS family inner membrane protein ynaI	AT4G00290.1	Mechanosensitive ion channel protein 	LOC_Os04g48940.2	"uncharacterized mscS family protein, putative, expressed"	AC235567_81.1	MscS Mechanosensitive ion channel AC235567.1 293100-287373 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.132684.1.A1_at	A	A1TS	POPTR_0004s22560	POPTR_0004s22560 (11)	scaffold_4:21424363-21425356(+) (11)	NA	Q4QSC8	Shugoshin-1	AT3G44960.1	unknown protein; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g31930.1	"shugoshin-1, putative, expressed"	Medtr4g076490.1	hypothetical protein 	GO:0045132|meiotic chromosome segregation	NA	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.132694.1.S1_at	A	A1TS	POPTR_0003s15900	POPTR_0003s15900 (11)	scaffold_3:15571628-15571885(+) (11)	NA	Q0WQK2	Probable S-acyltransferase At3g26935	AT3G26935.1	DHHC-type zinc finger family protein 	LOC_Os08g42620.2	"zinc finger DHHC domain-containing protein, putative, expressed"	Medtr1g124850.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.132698.2.S1_at	A	A1TS	POPTR_0001s05720	POPTR_0001s05720 (9)	scaffold_1:4397272-4397440(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0009664|plant-type cell wall organization||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process||GO:0071669|plant-type cell wall organization or biogenesis	GO:0005199|structural constituent of cell wall	NA
PtpAffx.132702.1.A1_at	A	A1TS	POPTR_0015s11530	POPTR_0015s11530 (11)	scaffold_15:12097103-12097278(-) (11)	NA	Q11204	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2"	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.132702.1.A1_s_at	A	A1TS	POPTR_0015s11530	POPTR_0015s11530 (11)	scaffold_15:12097299-12098125(-) (11)	NA	Q11204	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2"	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.132718.1.S1_s_at	A	A1TS	POPTR_0012s03340	POPTR_0012s03340 (11)	scaffold_12:2649964-2650530(+) (11)	NA	Q14684	Ribosomal RNA processing protein 1 homolog B	AT5G20600.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). "	LOC_Os04g56350.1	"nucleolar protein,Nop52 containing protein, expressed"	Medtr8g147770.1	"Nucleolar, Nop52 "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	"GO:0030688|""preribosome, small subunit precursor"""
PtpAffx.13272.2.S1_a_at	A	A1TS	POPTR_0013s15250	POPTR_0013s15250 (11)	scaffold_13:15279488-15279873(-) (11)	NA	A7NY33	Peroxidase 4	AT5G05340.1	Peroxidase superfamily protein 	LOC_Os11g02130.1	"peroxidase precursor, putative, expressed"	Medtr3g145050.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.13274.1.A1_a_at	A	A2TS	POPTR_0012s10040	POPTR_0015s10930 (11)//POPTR_0012s10040 (11)	scaffold_12:10908387-10908466(-) (11)//scaffold_15:11677769-11677848(-) (11)	NA	Q9SW34	Protein transport protein Sec61 subunit gamma-1	AT5G50460.1	secE/sec61-gamma protein transport protein 	LOC_Os02g08180.1	"protein transport protein SEC61 subunit gamma, putative, expressed"	Medtr5g091490.1	Protein secE/sec61-gamma protein 	GO:0006605|protein targeting	NA	GO:0016020|membrane
PtpAffx.13274.1.A1_s_at	A	A1TS	POPTR_0012s10040	POPTR_0012s10040 (11)	scaffold_12:10907296-10908386(-) (11)	NA	Q9SW34	Protein transport protein Sec61 subunit gamma-1	AT5G50460.1	secE/sec61-gamma protein transport protein 	LOC_Os02g08180.1	"protein transport protein SEC61 subunit gamma, putative, expressed"	Medtr5g091490.1	Protein secE/sec61-gamma protein 	GO:0006605|protein targeting	NA	GO:0016020|membrane
PtpAffx.132767.1.S1_at	A	A1TS	POPTR_0009s12690	POPTR_0009s12690 (9)	scaffold_9:10313483-10314032(+) (9)	NA	Q93YQ7	Endoglucanase 24	AT4G39010.1	glycosyl hydrolase 9B18 	LOC_Os09g36060.1	"endoglucanase, putative, expressed"	Medtr3g163060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.132816.1.S1_at	A	A1TS	POPTR_0014s16520	POPTR_0014s16520 (11)	scaffold_14:12586947-12587517(-) (11)	NA	O19071	"Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase"	AT2G05320.1	"beta-1,2-N-acetylglucosaminyltransferase II "	LOC_Os02g55470.1	"alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, putative"	NA	NA	GO:0009312|oligosaccharide biosynthetic process	"GO:0008455|""alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity"""	GO:0016021|integral to membrane||GO:0005795|Golgi stack
PtpAffx.132819.1.S1_s_at	A	A1TS	POPTR_0005s17850	POPTR_0005s17850 (11)	scaffold_5:15606550-15607029(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT5G49700.1	Predicted AT-hook DNA-binding family protein 	LOC_Os04g50030.1	"DNA binding protein, putative, expressed"	Medtr3g149230.1	Predicted AT-hook DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132845.1.S1_at	A	A2TS	POPTR_0013s09940	POPTR_0013s09940 (11)//POPTR_0013s10990 (11)	scaffold_13:9918139-9919113(+) (11)//scaffold_13:11670388-11671343(-) (11)	NA	Q94K73	"Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial"	AT3G58140.1	phenylalanyl-tRNA synthetase class IIc family protein 	LOC_Os12g34860.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr7g094230.1	"Phenylalanyl-tRNA synthetase, mitochondrial; Ribosomal protein L20; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0008033|tRNA processing||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.132851.1.S1_at	A	A1TS	POPTR_0014s16700	POPTR_0014s16700 (11)	scaffold_14:12781680-12782726(-) (11)	NA	P49572	"Indole-3-glycerol phosphate synthase, chloroplastic"	AT5G48220.1	Aldolase-type TIM barrel family protein 	LOC_Os04g39270.1	"indole-3-glycerol phosphate synthase, chloroplast precursor, putative, expressed"	Medtr5g091460.1	"Indole-3-glycerol phosphate synthase; TonB box, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132883.1.S1_at	A	A1TS	POPTR_0012s04140	POPTR_0012s04140 (11)	scaffold_12:3352287-3352337(+) (11)	NA	Q9LE73	Nudix hydrolase 4	AT1G18300.1	nudix hydrolase homolog 4 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr6g080940.2	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.132894.1.S1_a_at	A	A2TS	POPTR_0002s16960	POPTR_0002s16960 (11)//POPTR_0014s09120 (11)	scaffold_14:6754867-6755016(+) (11)//scaffold_2:12726398-12726547(+) (11)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132894.2.S1_s_at	A	A1TS	POPTR_0014s09120	POPTR_0014s09120 (11)	scaffold_14:6755591-6755897(+) (11)	POPTR_0002s16960 (6)	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT2G46370.4	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132904.1.S1_at	A	A1TS	POPTR_0017s14230	POPTR_0017s14230 (11)	scaffold_17:14368599-14369648(-) (11)	POPTR_0004s10580 (7)	P58813	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase"	AT3G30841.1	Cofactor-independent phosphoglycerate mutase 	LOC_Os12g35040.1	"2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0046872|metal ion binding	NA
PtpAffx.132910.1.S1_s_at	A	A2TS	POPTR_0001s33180	POPTR_0001s33180 (11)//POPTR_0016s00420 (10)	scaffold_1:31374534-31375625(-) (11)//scaffold_16:112260-113358(+) (10)	NA	A7IPQ1	50S ribosomal protein L15	AT5G64670.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os08g21840.1	"50S ribosomal protein L15, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.132923.1.S1_at	A	A1TS	POPTR_0005s07640	POPTR_0005s07640 (10)	scaffold_5:5228377-5230590(+) (10)	NA	O24454	Ubiquitin carboxyl-terminal hydrolase 3	AT4G39910.1	ubiquitin-specific protease 3 	LOC_Os04g37950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr3g101810.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.132923.1.S1_s_at	A	A2TS	POPTR_0005s07640	POPTR_0005s07640 (11)//POPTR_0007s05400 (11)	scaffold_5:5228341-5230848(+) (11)//scaffold_7:3487461-3489654(+) (11)	NA	O24454	Ubiquitin carboxyl-terminal hydrolase 3	AT4G39910.1	ubiquitin-specific protease 3 	LOC_Os04g37950.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr3g101810.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.132950.1.S1_s_at	A	A1TS	POPTR_0009s04790	POPTR_0009s04790 (11)	scaffold_9:5056184-5056699(+) (11)	NA	NA	NA	AT1G07310.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132968.1.S1_s_at	A	A1TS	POPTR_0002s03180	POPTR_0002s03180 (11)	scaffold_2:1959054-1959695(+) (11)	NA	P82859	Agglutinin	AT1G19715.3	Mannose-binding lectin superfamily protein 	LOC_Os05g43240.3	"jacalin-like lectin domain containing protein, expressed"	Medtr5g079480.1	Jacalin-related lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132974.1.S1_s_at	A	A1TS	POPTR_0019s04960	POPTR_0019s04960 (11)	scaffold_19:5161969-5162847(-) (11)	NA	NA	NA	AT1G55370.2	NDH-dependent cyclic electron flow 5 	LOC_Os03g53710.1	"aldose 1-epimerase, putative, expressed"	Medtr6g030670.1	Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132992.1.A1_at	A	A1TS	POPTR_0008s03280	POPTR_0008s03280 (11)	scaffold_8:1742686-1743054(-) (11)	NA	NA	NA	AT2G39210.1	Major facilitator superfamily protein 	LOC_Os03g58580.1	"nodulin, putative, expressed"	AC233660_5.1	Nodulin-like; Major facilitator superfamily MFS_1 AC233660.2 23536-25326 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.132995.1.S1_at	A	A1TS	POPTR_0002s05830	POPTR_0002s05830 (11)	scaffold_2:3831182-3831648(-) (11)	NA	NA	NA	AT2G30880.1	Pleckstrin homology (PH) domain-containing protein 	LOC_Os03g46340.1	"pleckstrin homology domain-containing protein, putative, expressed"	Medtr5g098210.1	Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1330.1.S1_at	A	A1TS	POPTR_0005s02620	POPTR_0005s02620 (9)	scaffold_5:1668117-1668752(-) (9)	NA	NA	NA	AT1G56210.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os05g05820.1	"pro-resilin precursor, putative, expressed"	Medtr8g138820.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.133005.1.S1_at	A	A1MS	POPTR_0018s12340	POPTR_0018s12340 (10)	scaffold_18:12830649-12831368(-) (10)	NA	Q9Z1R2	Large proline-rich protein BAT3	AT5G25270.1	Ubiquitin-like superfamily protein 	LOC_Os08g19830.1	"ubiquitin family protein, putative, expressed"	Medtr8g122470.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133007.1.S1_at	A	A1TS	POPTR_0013s07620	POPTR_0013s07620 (11)	scaffold_13:6453928-6455064(-) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT4G27600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os10g42240.1	"kinase, pfkB family, putative, expressed"	Medtr4g107860.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133012.1.S1_at	A	A1TS	POPTR_0010s08090	POPTR_0010s08090 (9)	scaffold_10:9027005-9028823(-) (9)	NA	NA	NA	AT5G43310.2	COP1-interacting protein-related 	LOC_Os03g64320.1	expressed protein	Medtr1g090340.1	"COP1-interacting protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133018.1.S1_s_at	A	A1TS	POPTR_0015s11290	POPTR_0015s11290 (11)	scaffold_15:11888119-11888742(+) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G41040.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr3g150860.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.133056.1.S1_at	A	A1TA	POPTR_0007s03550	POPTR_0007s03550 (10)	scaffold_7:2043077-2043665(+) (10)	NA	Q9FMF5	Root phototropism protein 3	AT5G64330.1	Phototropic-responsive NPH3 family protein 	LOC_Os02g35970.1	"BTBN2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr4g120980.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.133062.1.S1_at	A	A1TS	POPTR_0003s07930	POPTR_0003s07930 (11)	scaffold_3:9426229-9430465(-) (11)	NA	Q8W5B1	Polycomb group protein VERNALIZATION 2	AT4G16845.1	VEFS-Box of polycomb protein 	LOC_Os09g13630.1	"ZOS9-03 - C2H2 zinc finger protein, expressed"	Medtr5g013280.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133063.1.S1_at	A	A1MS	POPTR_0014s17910	POPTR_0014s17910 (10)	scaffold_14:14453059-14453746(-) (11)	NA	NA	NA	AT1G45150.1	unknown protein; Has 219 Blast hits to 202 proteins in 78 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). 	LOC_Os07g39300.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133067.1.S1_s_at	A	A1TS	POPTR_0019s07200	POPTR_0019s07200 (11)	scaffold_19:8052639-8052912(-) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT5G16730.1	Plant protein of unknown function (DUF827) 	LOC_Os05g02820.1	"protein transport protein-related, putative, expressed"	Medtr4g107430.1	"protein transport protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133091.1.S1_s_at	A	A1TS	POPTR_0012s10660	POPTR_0012s10660 (11)	scaffold_12:11365935-11366100(-) (11)	NA	NA	NA	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.1331.1.S1_at	A	A1TS	POPTR_0010s21070	POPTR_0010s21070 (11)	scaffold_10:18489443-18490288(-) (11)	NA	Q9R0U0	Serine/arginine-rich splicing factor 10	AT3G55460.1	SC35-like splicing factor 30 	LOC_Os02g15310.1	"RNA recognition motif containing protein, expressed"	Medtr5g087290.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.133107.1.S1_at	A	A1TS	POPTR_0016s14750	POPTR_0016s14750 (10)	scaffold_16:13902153-13902743(-) (10)	NA	NA	NA	AT3G08640.1	Protein of unknown function (DUF3411) 	LOC_Os01g59740.1	expressed protein	Medtr7g080630.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133124.1.S1_at	A	A1TS	POPTR_0001s06930	POPTR_0001s06930 (9)	scaffold_1:5291023-5292189(+) (9)	NA	A7MCT6	Ethanolamine kinase 2	AT1G74320.1	Protein kinase superfamily protein 	LOC_Os01g51920.1	"phosphotransferase, putative, expressed"	Medtr3g005000.1	"Choline kinase, N-terminal; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133149.1.S1_at	A	A1TS	POPTR_0009s04180	POPTR_0009s04180 (10)	scaffold_9:4675977-4677084(+) (10)	POPTR_0001s25160 (6)	NA	NA	AT3G46780.1	plastid transcriptionally active 16 	LOC_Os05g22614.1	"PTAC16, putative, expressed"	Medtr4g084290.1	"PTAC16 ; binding {Arab, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13315.1.S1_at	A	A1TS	POPTR_0015s05800	POPTR_0015s05800 (10)	scaffold_15:6148974-6150376(+) (10)	NA	Q6TEN6	WD repeat-containing protein 91	AT3G49660.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os05g23430.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g125820.1	"WD repeat-containing protein 91, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133175.1.S1_at	A	A1TS	POPTR_0002s03840	POPTR_0002s03840 (11)	scaffold_2:2399015-2399739(+) (11)	NA	Q80Y84	Lysine-specific demethylase 5B	AT1G08620.2	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os05g10770.1	"transcription factor jumonji, putative, expressed"	Medtr4g137840.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN; FY-rich, N-terminal; Zinc finger, C5HC2-type "	NA	NA	GO:0005634|nucleus
PtpAffx.133177.1.S1_at	A	A1TS	POPTR_0010s02190	POPTR_0010s02190 (11)	scaffold_10:2506957-2507451(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr2g025100.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133192.1.S1_at	A	A1TS	POPTR_0001s34380	POPTR_0001s34380 (9)	scaffold_1:32532958-32533128(-) (9)	NA	A5GI62	Ribosome maturation factor rimM	AT5G46420.1	16S rRNA processing protein RimM family 	LOC_Os05g49130.2	"16S rRNA processing protein RimM containing protein, expressed"	Medtr4g136560.1	UTP--glucose-1-phosphate uridylyltransferase; 16S rRNA processing protein RimM 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	NA
PtpAffx.133192.1.S1_s_at	A	A1TS	POPTR_0001s34380	POPTR_0001s34380 (11)	scaffold_1:32531609-32532891(-) (11)	NA	A5GI62	Ribosome maturation factor rimM	AT5G46420.1	16S rRNA processing protein RimM family 	LOC_Os05g49130.2	"16S rRNA processing protein RimM containing protein, expressed"	Medtr4g136560.1	UTP--glucose-1-phosphate uridylyltransferase; 16S rRNA processing protein RimM 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	NA
PtpAffx.1332.1.S1_at	A	A1TS	POPTR_0003s04980	POPTR_0003s04980 (11)	scaffold_3:6080987-6081925(-) (11)	NA	Q9ZSY8	Auxin-responsive protein IAA27	AT4G29080.1	phytochrome-associated protein 2 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122570.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.1332.2.A1_at	A	A1TS	POPTR_0001s18680	POPTR_0001s18680 (11)	scaffold_1:15819457-15820212(+) (11)	NA	Q9ZSY8	Auxin-responsive protein IAA27	AT4G29080.1	phytochrome-associated protein 2 	LOC_Os01g13030.2	"OsIAA3 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122570.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.133200.1.S1_at	A	A1TS	POPTR_0013s14020	POPTR_0013s14020 (11)	scaffold_13:14335980-14336879(-) (11)	NA	NA	NA	AT4G03420.1	Protein of unknown function (DUF789) 	LOC_Os10g35150.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133206.1.S1_at	A	A1TS	POPTR_0010s12520	POPTR_0010s12520 (11)	scaffold_10:12536681-12536739(-) (11)	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.2	expressed protein	Medtr4g156620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133206.1.S1_s_at	A	A1TS	POPTR_0010s12520	POPTR_0010s12520 (11)	scaffold_10:12535944-12536633(-) (11)	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.2	expressed protein	Medtr4g156620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133217.1.S1_s_at	A	A1TS	POPTR_0005s03890	POPTR_0005s03890 (11)	scaffold_5:2579982-2581473(-) (11)	NA	Q9MA98	DNA excision repair protein ERCC-1	AT3G05210.1	"nucleotide repair protein, putative "	LOC_Os10g37490.1	"DNA excision repair protein ERCC-1, putative, expressed"	Medtr1g099210.1	DNA repair protein rad10; RuvA domain 2-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0004519|endonuclease activity||GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.133231.1.S1_at	A	A1TS	POPTR_0011s16040	POPTR_0011s16040 (11)	scaffold_11:18009126-18010837(+) (11)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G14350.2	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.133233.1.S1_at	A	A1TS	POPTR_0001s47730	POPTR_0001s47730 (10)	scaffold_1:47891434-47894079(-) (11)	POPTR_0004s06480 (6)	Q8RXZ4	Probable protein phosphatase 2C 18	AT1G79630.1	Protein phosphatase 2C family protein 	LOC_Os08g39100.1	"protein phosphatase 2C, putative, expressed"	Medtr7g089830.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133244.1.S1_at	A	A2TS	POPTR_0017s12950	POPTR_0017s12950 (11)//POPTR_0005s13350 (9)	scaffold_17:13114129-13114698(-) (11)//scaffold_5:10509804-10510371(+) (11)	NA	O35250	Exocyst complex component 7	AT3G29400.1	exocyst subunit exo70 family protein E1 	LOC_Os01g55799.3	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr3g036640.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.133247.1.S1_at	A	A1TS	POPTR_0005s02670	POPTR_0005s02670 (11)	scaffold_5:1708454-1708923(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.3	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133254.1.A1_at	A	A1TS	POPTR_0002s07560	POPTR_0002s07560 (11)	scaffold_2:5169615-5170395(-) (11)	NA	Q54M22	"2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial"	AT1G21400.1	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein 	LOC_Os12g08260.2	"dehydrogenase E1 component domain containing protein, expressed"	Medtr3g143240.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.133277.1.S1_at	A	A1TS	POPTR_0001s44480	POPTR_0001s44480 (11)	scaffold_1:44883877-44885161(+) (11)	NA	Q94C53	DDRGK domain-containing protein 1	AT4G27120.2	CONTAINS InterPro DOMAIN/s: DDRGK domain (InterPro:IPR019153); Has 14775 Blast hits to 8764 proteins in 778 species: Archae - 29; Bacteria - 1878; Metazoa - 5164; Fungi - 1447; Plants - 582; Viruses - 164; Other Eukaryotes - 5511 (source: NCBI BLink). 	LOC_Os07g01320.1	expressed protein	Medtr2g097160.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133289.1.S1_at	A	A3TS	POPTR_0015s00220	POPTR_0015s00220 (11)//POPTR_0015s02010 (11)//POPTR_0015s02000 (10)	scaffold_15:53037-53380(+) (11)//scaffold_15:1383648-1392861(-) (11)//scaffold_15:1388321-1393180(-) (10)	NA	Q3ECH2	Probable receptor-like protein kinase At1g65250	AT1G66920.1	Protein kinase superfamily protein 	LOC_Os01g02560.1	"Ser/Thr receptor-like kinase, putative, expressed"	Medtr1g034440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.133294.1.A1_at	A	A1MS	POPTR_0007s05310	POPTR_0007s05310 (11)	scaffold_7:3417137-3417299(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133302.1.S1_at	A	A1TS	POPTR_0006s15440	POPTR_0006s15440 (11)	scaffold_6:12826569-12827506(-) (11)	NA	NA	NA	AT2G26695.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os06g04920.1	"zinc finger family protein, putative, expressed"	Medtr8g119620.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.133334.1.A1_at	A	A1TS	POPTR_0008s06930	POPTR_0008s06930 (10)	scaffold_8:4176585-4176914(-) (10)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g094020.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.133344.1.A1_at	A	A1TS	POPTR_0002s15810	POPTR_0002s15810 (9)	scaffold_2:11780757-11781085(+) (9)	NA	Q9ZUH5	Short-chain dehydrogenase/reductase 2	AT1G01800.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44980.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034640.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133356.1.A1_at	A	A1TS	POPTR_0018s11470	POPTR_0018s11470 (9)	scaffold_18:12193365-12195258(-) (11)	NA	Q9M099	Serine carboxypeptidase 24	AT4G30610.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g55130.2	"OsSCP10 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.133377.1.A1_at	A	A3TS	POPTR_0005s09090	POPTR_0005s09090 (10)//POPTR_0007s07280 (10)//POPTR_0007s07220 (10)	scaffold_5:6374338-6374835(+) (10)//scaffold_7:5549921-5550404(+) (10)//scaffold_7:5584077-5584560(-) (10)	NA	Q9FTA0	GEM-like protein 4	AT5G08350.1	GRAM domain-containing protein / ABA-responsive protein-related 	LOC_Os10g34730.1	"GEM, putative, expressed"	Medtr1g143990.1	Isopenicillin N synthetase; GRAM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133379.1.A1_at	A	A1TS	POPTR_0002s07330	POPTR_0002s07330 (11)	scaffold_2:5004202-5004956(+) (11)	NA	O49292	"PsbP domain-containing protein 4, chloroplastic"	AT1G77090.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os12g08830.1	"thylakoid lumenal 29.8 kDa protein, putative, expressed"	Medtr3g125340.1	"thylakoid lumenal 29.8 kDa protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133383.1.A1_at	A	A1TS	POPTR_0008s00290	POPTR_0008s00290 (11)	scaffold_8:82880-83187(-) (11)	NA	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog 1	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58130.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1334.1.S1_a_at	A	A2TS	POPTR_0006s27490	POPTR_0018s02150 (11)//POPTR_0006s27490 (11)	scaffold_18:1913514-1913618(-) (11)//scaffold_6:25377117-25377221(-) (11)	NA	NA	NA	AT2G25270.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1334.1.S1_at	A	A1TS	POPTR_0006s27490	POPTR_0006s27490 (11)	scaffold_6:25376780-25377337(-) (11)	NA	NA	NA	AT2G25270.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1334.2.A1_a_at	A	A1TS	POPTR_0018s02150	POPTR_0018s02150 (11)	scaffold_18:1913215-1913359(-) (11)	NA	NA	NA	AT2G25270.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1334.3.A1_at	A	A1TS	POPTR_0018s02150	POPTR_0018s02150 (9)	scaffold_18:1913239-1917226(-) (10)	NA	NA	NA	AT2G25270.1	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g55590.1	expressed protein	Medtr3g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133404.1.A1_a_at	A	A1MS	POPTR_0004s19050	POPTR_0004s19050 (11)	scaffold_19:2347552-2347660(-) (11)//scaffold_217:35088-35196(+) (11)//scaffold_4:9478915-9479023(+) (11)//scaffold_4:18852393-18852501(+) (11)//scaffold_4:18951347-18951455(+) (11)	POPTR_0019s02590 (8)	Q9FH03	Beta-glucosidase 12	AT5G42260.1	beta glucosidase 12 	LOC_Os06g21570.1	"Os6bglu24 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed"	Medtr4g024200.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.13344.2.S1_a_at	A	A1TS	POPTR_0002s08150	POPTR_0002s08150 (11)	scaffold_2:5646268-5646726(+) (11)	NA	Q39013	NAC domain-containing protein 2	AT1G01720.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os01g66120.1	"No apical meristem protein, putative, expressed"	Medtr3g100760.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.133453.1.A1_at	A	A1TS	POPTR_0016s00270	POPTR_0016s00270 (11)	scaffold_16:33236-33591(+) (11)	NA	NA	NA	NA	NA	LOC_Os08g38960.1	expressed protein	Medtr2g033700.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133458.1.A1_at	A	A1TS	POPTR_0001s32030	POPTR_0001s32030 (11)	scaffold_1:30457793-30458080(-) (11)	NA	Q8RXS5	Probable disease resistance protein At5g63020	AT5G63020.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os01g57870.2	"disease resistance protein RPS2, putative, expressed"	Medtr4g124830.1	"Heat shock protein DnaJ, N-terminal; NB-ARC "	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.133468.1.A1_at	A	A1TS	POPTR_0005s01330	POPTR_0005s01330 (9)	scaffold_5:439521-439608(-) (11)//scaffold_5:555212-555299(-) (11)//scaffold_5:566975-567062(-) (11)//scaffold_5:796867-796954(-) (11)//scaffold_5:880839-880925(-) (9)	NA	Q9SD53	UPF0481 protein At3g47200	AT2G44930.1	Plant protein of unknown function (DUF247) 	LOC_Os01g38120.1	plant protein of unknown function domain containing protein	Medtr3g111220.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133471.1.A1_at	A	A1TS	POPTR_0005s23360	POPTR_0005s23360 (11)	scaffold_5:22165205-22166081(+) (11)	NA	NA	NA	AT2G48140.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g57980.1	"LTPL99 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr1g084060.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133481.1.A1_at	A	A1TS	POPTR_0002s09230	POPTR_0002s09230 (11)	scaffold_2:6550316-6550666(+) (11)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os10g21940.1	expressed protein	Medtr5g010660.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133484.1.A1_at	A	A1TS	POPTR_0012s03540	POPTR_0012s03540 (11)	scaffold_12:2779819-2780003(-) (11)	NA	NA	NA	AT2G27660.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g41930.1	"DC1 domain-containing protein, putative"	Medtr7g112030.1	C1-like 	NA	GO:0008270|zinc ion binding	NA
PtpAffx.133485.1.A1_at	A	A1TS	POPTR_0005s05090	POPTR_0005s05090 (11)	scaffold_5:3394226-3394525(+) (11)	NA	Q9M081	Protein transport protein Sec24-like At4g32640	AT4G32640.2	Sec23/Sec24 protein transport family protein 	LOC_Os11g29200.1	"protein transport protein, putative, expressed"	AC235094_11.1	Sec23/Sec24 trunk region; Sec23/Sec24 beta-sandwich AC235094.1 54936-56264 E EGN_Mt090430 200	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.133493.1.A1_at	A	A1TA	POPTR_0018s11080	POPTR_0018s11080 (10)	scaffold_18:11875884-11876256(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133495.1.S1_at	A	A1TS	POPTR_0007s03690	POPTR_0007s03690 (9)	scaffold_280:20285-21549(-) (9)//scaffold_7:2111995-2113185(-) (9)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT4G05430.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os01g53750.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g137950.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133511.1.S1_at	A	A1TS	POPTR_0010s07120	POPTR_0010s07120 (11)	scaffold_10:8319692-8320541(+) (11)//scaffold_10:8333484-8334388(+) (9)	NA	Q03662	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os05g34150.1	"glutathione S-transferase, putative, expressed"	Medtr1g111730.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133519.1.A1_at	A	A1TS	POPTR_0009s01160	POPTR_0009s01160 (11)	scaffold_9:1290627-1290666(-) (11)	NA	NA	NA	AT5G22930.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.2	expressed protein	Medtr4g076380.1	Protein of unknown function DUF1635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133534.1.A1_at	A	A1TS	POPTR_0012s00570	POPTR_0012s00570 (11)	scaffold_12:281487-282237(-) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G71400.1	receptor like protein 12 	LOC_Os12g11860.1	"verticillium wilt disease resistance protein precursor, putative"	Medtr5g094230.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.133554.1.A1_s_at	A	A1TS	POPTR_0005s16540	POPTR_0005s16540 (11)	scaffold_5:13402490-13402952(-) (11)	NA	Q13085	Acetyl-CoA carboxylase 1	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
PtpAffx.133563.1.A1_at	A	A1MS	POPTR_0014s15990	POPTR_0014s15990 (10)	scaffold_14:12070291-12071446(+) (10)	NA	A7SLC8	N-acetyltransferase 9-like protein	AT2G04845.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g09860.2	"acetyltransferase, GNAT family, putative, expressed"	Medtr3g106050.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.133567.1.A1_at	A	A1TS	POPTR_0014s07600	POPTR_0014s07600 (11)	scaffold_14:5710107-5710584(+) (11)	NA	Q9ZUT0	ABC transporter G family member 2	AT2G37360.1	ABC-2 type transporter family protein 	LOC_Os03g17350.1	"white-brown complex homolog protein, putative, expressed"	AC235022_3.1	ABC transporter related AC235022.1 10753-13248 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.133584.1.A1_at	A	A1TS	POPTR_0001s35280	POPTR_0001s35280 (10)	scaffold_1:33584735-33585267(-) (10)	NA	Q8L8Q3	LOB domain-containing protein 25	AT3G27650.1	LOB domain-containing protein 25 	LOC_Os01g07480.2	"DUF260 domain containing protein, putative, expressed"	Medtr3g114570.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133609.1.A1_at	A	A1TS	POPTR_0014s02660	POPTR_0014s02660 (11)	scaffold_14:2216188-2216663(+) (11)	NA	NA	NA	AT1G45688.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42860.1); Has 258 Blast hits to 242 proteins in 39 species: Archae - 0; Bacteria - 11; Metazoa - 10; Fungi - 14; Plants - 198; Viruses - 17; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os04g59330.1	expressed protein	Medtr4g155720.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.133610.1.A1_at	A	A1MS	POPTR_0012s03530	POPTR_0012s03530 (9)	scaffold_12:2770762-2771252(-) (9)	NA	Q6R0H1	Protein LHY	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133616.1.A1_at	A	A1TS	POPTR_0017s04640	POPTR_0017s04640 (11)	scaffold_17:3545799-3547601(+) (11)	NA	Q9XFD1	Nuclear cap-binding protein subunit 2	AT5G44200.2	CAP-binding protein 20 	LOC_Os02g39890.1	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.133629.1.A1_s_at	A	A1TS	POPTR_0001s09040	POPTR_0001s09040 (11)	scaffold_1:6922184-6922293(+) (11)	NA	Q54KJ8	General transcription factor IIE subunit 2	AT4G20330.1	"Transcription initiation factor TFIIE, beta subunit "	LOC_Os10g25770.2	"transcription initiation factor IIE subunit beta, putative, expressed"	Medtr5g010780.2	"transcription initiation factor-related, putative "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006367|transcription initiation from RNA polymerase II promoter||GO:0006461|protein complex assembly	GO:0003702|RNA polymerase II transcription factor activity	GO:0005673|transcription factor TFIIE complex
PtpAffx.133632.2.A1_s_at	A	A5TS	POPTR_0002s15110	POPTR_0002s15110 (11)//POPTR_0201s00200 (11)//POPTR_0002s15150 (11)//POPTR_0002s15170 (9)//POPTR_0002s15140 (9)	scaffold_2:11241209-11241504(+) (11)//scaffold_2:11290911-11291206(+) (11)//scaffold_2:11320855-11321150(+) (11)//scaffold_2:11337936-11338231(+) (9)//scaffold_201:4855-5150(-) (11)	NA	O64638	Cytochrome P450 76C3	AT2G45580.1	"cytochrome P450, family 76, subfamily C, polypeptide 3 "	LOC_Os10g08540.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.133641.1.A1_at	A	A1MS	POPTR_0008s20240	POPTR_0008s20240 (11)	scaffold_8:14014060-14014299(-) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G18910.1	Protein kinase superfamily protein 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr1g098870.1	Tyrosine protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133650.1.A1_at	A	A1TS	POPTR_0013s01940	POPTR_0013s01940 (11)	scaffold_13:1115525-1115869(-) (11)	NA	NA	NA	AT5G27650.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os05g05660.1	"PWWP domain containing protein, expressed"	Medtr7g138980.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133656.1.A1_a_at	A	A2TS	POPTR_0002s03860	POPTR_0002s03860 (11)//POPTR_0005s24730 (11)	scaffold_2:2417418-2417455(-) (11)//scaffold_5:23170606-23170643(+) (11)	NA	NA	NA	AT2G31160.1	Protein of unknown function (DUF640) 	LOC_Os02g07030.3	"DUF640 domain containing protein, putative, expressed"	Medtr1g043150.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133656.2.S1_at	A	A1TS	POPTR_0002s03860	POPTR_0002s03860 (11)	scaffold_2:2416811-2417156(-) (11)	NA	NA	NA	AT2G31160.1	Protein of unknown function (DUF640) 	LOC_Os02g07030.3	"DUF640 domain containing protein, putative, expressed"	Medtr1g043150.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133656.3.A1_at	A	A1TS	POPTR_0005s24730	POPTR_0005s24730 (11)	scaffold_5:23170759-23171120(+) (11)	NA	NA	NA	AT2G31160.1	Protein of unknown function (DUF640) 	LOC_Os02g41460.1	"DUF640 domain containing protein, putative, expressed"	Medtr1g043150.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133657.1.A1_a_at	A	A1TS	POPTR_0002s09730	POPTR_0002s09730 (11)	scaffold_2:6976886-6977092(+) (11)	NA	Q43125	Cryptochrome-1	AT4G08920.1	cryptochrome 1 	LOC_Os04g37920.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g072760.2	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.133657.1.A1_at	A	A1TS	POPTR_0002s09730	POPTR_0002s09730 (9)	scaffold_2:6976455-6977258(+) (9)	NA	Q43125	Cryptochrome-1	AT4G08920.1	cryptochrome 1 	LOC_Os04g37920.4	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g072760.2	"Deoxyribodipyrimidine photolyase, class 1; "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.133657.2.A1_a_at	A	A1TA	POPTR_0002s09740	POPTR_0002s09740 (9)	scaffold_2:6977890-6978195(+) (11)	NA	P08995	Nodulin-26	AT4G18910.1	NOD26-like intrinsic protein 1;2 	LOC_Os02g13870.1	"aquaporin protein, putative, expressed"	Medtr5g072770.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.13366.1.S1_at	A	A2TS	POPTR_0001s04800	POPTR_0003s21590 (11)//POPTR_0001s04800 (11)	scaffold_1:3686657-3688364(+) (11)//scaffold_3:19688900-19690804(+) (11)	NA	Q9SPK5	Formate--tetrahydrofolate ligase	AT1G50480.1	10-formyltetrahydrofolate synthetase 	LOC_Os09g27420.1	"formate--tetrahydrofolate ligase, putative, expressed"	Medtr1g146470.1	"Formate-tetrahydrofolate ligase, FTHFS "	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004329|formate-tetrahydrofolate ligase activity||GO:0005524|ATP binding	NA
PtpAffx.133686.1.A1_at	A	A1TS	POPTR_0006s08310	POPTR_0006s08310 (11)	scaffold_6:6048138-6049089(+) (11)	NA	P45482	Cell division protein ftsZ	AT3G52750.1	Tubulin/FtsZ family protein 	LOC_Os03g44420.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g127280.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	NA	GO:0043234|protein complex
PtpAffx.133702.1.A1_at	A	A1TS	POPTR_0017s12910	POPTR_0017s12910 (9)	scaffold_17:13098801-13099273(+) (9)	NA	Q9LIA4	Protein RIK	AT3G29390.1	RS2-interacting KH protein 	LOC_Os03g11520.2	expressed protein	NA	NA	NA	GO:0003723|RNA binding	NA
PtpAffx.133712.1.A1_at	A	A1TS	POPTR_0018s12670	POPTR_0018s12670 (9)	scaffold_18:13192863-13193323(+) (11)	NA	Q8RX87	Probable galactinol--sucrose galactosyltransferase 6	AT5G20250.4	Raffinose synthase family protein 	LOC_Os06g07600.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr8g121390.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133714.1.A1_at	A	A1MS	POPTR_0008s21150	POPTR_0008s21150 (11)	scaffold_8:15312526-15312826(-) (11)	NA	NA	NA	AT1G09520.1	"LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr8g133790.1	"Zinc finger, PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133715.1.A1_at	A	A1TS	POPTR_0016s15060	POPTR_0016s15060 (9)	scaffold_16:14102972-14103291(+) (9)	NA	Q9AVK4	Protein SCARECROW	AT3G54220.1	GRAS family transcription factor 	LOC_Os11g03110.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr7g081070.1	Flagellar basal body rod protein; GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133720.1.A1_at	A	A1TS	POPTR_0015s06120	POPTR_0015s06120 (11)	scaffold_15:6407224-6407815(+) (11)	NA	Q7SXW0	Solute carrier family 25 member 39	AT4G27940.1	manganese tracking factor for mitochondrial SOD2 	LOC_Os08g29720.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g124670.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133722.1.A1_at	A	A1TS	POPTR_0013s05200	POPTR_0013s05200 (10)	scaffold_13:3690313-3691130(+) (10)	NA	Q9P2D0	Inhibitor of Bruton tyrosine kinase	AT3G03790.2	ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein 	LOC_Os07g07080.1	"regulator of chromosome condensation/beta-lactamase-inhibitor protein II, putative, expressed"	Medtr7g102770.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133729.1.A1_at	A	A1TS	POPTR_0010s25750	POPTR_0010s25750 (11)	scaffold_10:21282087-21282321(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133729.1.A1_s_at	A	A1TS	POPTR_0010s25750	POPTR_0010s25750 (11)	scaffold_10:21282126-21282381(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133752.1.A1_at	A	A1TS	POPTR_0004s19720	POPTR_0004s19720 (11)	scaffold_4:19485415-19485810(-) (11)	NA	A2YBX5	Protein kinase G11A	AT3G44610.1	Protein kinase superfamily protein 	LOC_Os11g05320.1	"AGC_PVPK_like_kin82y.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.133756.1.A1_at	A	A1MS	POPTR_0006s20820	POPTR_0006s20820 (11)	scaffold_6:19851790-19852068(+) (11)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr7g112150.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.133756.2.A1_a_at	A	A2TS	POPTR_0016s05890	POPTR_0149s00220 (11)//POPTR_0016s05890 (11)	scaffold_149:54551-54643(+) (11)//scaffold_16:3844072-3844165(+) (11)//scaffold_16:3844173-3844266(+) (11)//scaffold_16:3854355-3854451(+) (9)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr7g112150.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.133756.2.A1_at	A	A2TS	POPTR_0016s05890	POPTR_0016s05890 (11)//POPTR_0149s00220 (9)	scaffold_149:54385-54660(+) (9)//scaffold_16:3843909-3844283(+) (11)	NA	P46665	Homeobox-leucine zipper protein HAT14	AT5G06710.1	homeobox from Arabidopsis thaliana 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr7g112150.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.133758.1.A1_at	A	A1TS	POPTR_0003s01370	POPTR_0003s01370 (10)	scaffold_3:1206198-1206761(-) (10)	NA	Q9SAC4	F-box protein At1g10780	AT1G10780.1	F-box/RNI-like superfamily protein 	LOC_Os09g28120.1	"OsFBX330 - F-box domain containing protein, expressed"	Medtr2g007270.1	"F-box protein At1g10780, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133782.1.A1_s_at	A	A1TS	POPTR_0006s02970	POPTR_0006s02970 (11)	scaffold_6:1881547-1881712(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity	NA
PtpAffx.133784.1.A1_at	A	A1TS	POPTR_0002s00440	POPTR_0002s00440 (11)	scaffold_2:156720-157085(-) (11)	NA	Q8RY95	Squamosa promoter-binding-like protein 14	AT1G20980.1	squamosa promoter binding protein-like 14 	LOC_Os08g40260.1	"OsSPL15 - SBP-box gene family member, expressed"	Medtr1g039740.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.133790.1.A1_at	A	A1TS	POPTR_0015s11170	POPTR_0015s11170 (11)	scaffold_15:11822968-11823305(-) (11)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os11g43820.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr3g150820.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133825.1.A1_at	A	A1TS	POPTR_0002s15660	POPTR_0002s15660 (11)	scaffold_2:11695746-11696217(+) (11)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT3G61180.1	RING/U-box superfamily protein 	LOC_Os02g45240.1	"zinc finger family protein, putative, expressed"	Medtr5g010900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133834.2.S1_s_at	A	A1TS	POPTR_0007s10380	POPTR_0007s10380 (11)	scaffold_7:10307070-10307800(-) (11)	NA	Q8BHJ5	F-box-like/WD repeat-containing protein TBL1XR1	AT5G67320.1	WD-40 repeat family protein 	LOC_Os07g22220.1	"F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133839.1.A1_at	A	A1TS	POPTR_0006s00350	POPTR_0006s00350 (11)	scaffold_6:134283-134827(-) (11)	NA	Q1LUT1	Enhancer of mRNA-decapping protein 4	AT3G13300.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g033290.1	"Peptidase S26A, signal peptidase I; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133840.1.A1_at	A	A1TS	POPTR_0014s13550	POPTR_0014s13550 (9)	scaffold_14:9964093-9964491(-) (9)	NA	Q95K04	E3 ubiquitin-protein ligase RNF133	AT3G58720.2	RING/U-box superfamily protein 	LOC_Os09g17610.1	"RING finger protein, putative, expressed"	Medtr4g110540.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133843.1.A1_a_at	A	A1TS	POPTR_0003s21350	POPTR_0003s21350 (11)	scaffold_3:19553869-19554217(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13385.1.S1_at	A	A1TS	POPTR_0004s24200	POPTR_0004s24200 (11)	scaffold_4:22910763-22911217(+) (11)	NA	P43903	Quinone oxidoreductase	AT5G61510.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os03g01190.1	"dehydrogenase, putative, expressed"	Medtr2g014130.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.13385.2.S1_at	A	A1TS	POPTR_0001s02300	POPTR_0001s02300 (11)	scaffold_1:1739463-1739831(-) (11)	NA	P43903	Quinone oxidoreductase	AT5G61510.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os03g01190.1	"dehydrogenase, putative, expressed"	Medtr2g014130.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.133870.1.A1_at	A	A1TS	POPTR_0018s07540	POPTR_0018s07540 (11)	scaffold_18:7888910-7889149(+) (11)	NA	P47787	Thromboxane-A synthase	AT2G26170.2	"cytochrome P450, family 711, subfamily A, polypeptide 1 "	LOC_Os01g50590.1	"cytochrome P450, putative"	Medtr3g139760.1	"E-class P450, group I "	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.133875.1.A1_at	A	A1MS	POPTR_0004s06530	POPTR_0004s06530 (11)	scaffold_4:5266506-5267896(-) (11)	NA	NA	NA	AT1G73350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 46 Blast hits to 46 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 3; Plants - 36; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os02g42540.1	expressed protein	Medtr6g083900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133880.1.A1_at	A	A1MS	POPTR_0018s00600	POPTR_0018s00600 (11)	scaffold_18:531466-531737(+) (11)	NA	Q571G4	Protein lin-54 homolog	AT4G29000.1	Tesmin/TSO1-like CXC domain-containing protein 	LOC_Os01g55580.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	AC225507_24.1	"Tesmin/TSO1-like, CXC AC225507.11 107125-103243 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133884.1.A1_at	A	A1TS	POPTR_0011s07490	POPTR_0011s07490 (11)	scaffold_11:8337200-8338327(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133890.1.A1_at	A	A1TS	POPTR_0010s23760	POPTR_0010s23760 (11)	scaffold_10:20246345-20246887(+) (11)	NA	P29503	Protein neuralized	AT5G04460.3	RING/U-box superfamily protein 	LOC_Os02g57750.1	"protein binding protein, putative, expressed"	AC235664_19.1	"Haem peroxidase, plant/fungal/bacterial AC235664.1 73370-70390 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133891.1.A1_at	A	A1TS	POPTR_0018s02240	POPTR_0018s02240 (11)	scaffold_18:2005745-2006735(+) (11)	NA	Q0V7T5	Probable receptor-like protein kinase At1g80640	AT4G32000.2	Protein kinase superfamily protein 	LOC_Os05g25540.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g012230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.133899.1.A1_at	A	A1MS	POPTR_0010s09670	POPTR_0010s09670 (11)	scaffold_10:10387829-10388160(-) (11)	NA	NA	NA	AT3G22520.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14840.1); Has 717 Blast hits to 703 proteins in 179 species: Archae - 14; Bacteria - 134; Metazoa - 141; Fungi - 74; Plants - 209; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). "	LOC_Os03g53590.2	expressed protein	Medtr5g006500.1	"CDPK adapter protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133900.1.A1_a_at	A	A1TS	POPTR_0014s10650	POPTR_0014s10650 (11)	scaffold_14:7928252-7928551(+) (11)	NA	Q8R116	Protein notum homolog	AT3G62060.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134290.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133900.1.A1_at	A	A1TS	POPTR_0014s10650	POPTR_0014s10650 (11)	scaffold_14:7929291-7929556(+) (11)	NA	Q8R116	Protein notum homolog	AT3G62060.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134290.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133900.2.A1_a_at	A	A1MS	POPTR_0014s10650	POPTR_0014s10650 (11)	scaffold_14:7928557-7928819(+) (11)	NA	Q8R116	Protein notum homolog	AT3G62060.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134290.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133902.1.A1_at	A	A1TS	POPTR_0001s35910	POPTR_0001s35910 (11)	scaffold_1:34371272-34371627(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133918.1.A1_at	A	A1TS	POPTR_0015s01160	POPTR_0015s01160 (11)	scaffold_15:717369-717869(-) (11)	NA	Q8LAP8	Dof zinc finger protein DOF4.6	AT4G24060.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os04g47990.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.133920.1.A1_at	A	A1MS	POPTR_0010s13620	POPTR_0010s13620 (11)	scaffold_10:13438095-13438322(+) (11)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	LOC_Os06g15370.1	"peptide transporter PTR2, putative, expressed"	Medtr5g068370.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.133937.2.A1_a_at	A	A1TS	POPTR_0001s07200	POPTR_0001s07200 (11)	scaffold_1:5447975-5448188(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133937.3.A1_a_at	A	A1TS	POPTR_0001s07200	POPTR_0001s07200 (11)	scaffold_1:5449767-5450152(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133939.1.A1_at	A	A1MS	POPTR_0012s04250	POPTR_0012s04250 (11)	scaffold_12:3482364-3482756(+) (11)	NA	Q15526	Surfeit locus protein 1	AT3G17910.1	Surfeit locus 1 cytochrome c oxidase biogenesis protein 	LOC_Os03g10360.1	"SURF1, putative, expressed"	Medtr6g083260.1	Surfeit locus 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133950.1.A1_at	A	A1MS	POPTR_0013s15390	POPTR_0013s15390 (11)	scaffold_13:15394788-15395039(+) (11)	NA	Q6BY27	ATP-dependent RNA helicase DBP2	AT1G55150.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os01g10050.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.133965.1.A1_at	A	A1TS	POPTR_0019s13630	POPTR_0019s13630 (11)	scaffold_19:14493767-14494303(-) (11)	NA	NA	NA	AT4G03320.1	translocon at the inner envelope membrane of chloroplasts 20-IV 	LOC_Os07g38110.2	"tic20, putative, expressed"	Medtr5g024740.1	"Tic20-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133967.1.A1_at	A	A1TA	POPTR_0009s16220	POPTR_0009s16220 (11)	scaffold_9:12389908-12390144(-) (11)	NA	P60123	RuvB-like 1	AT5G22330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g08170.1	"ruvB-like, putative, expressed"	Medtr3g140320.1	"AAA ATPase; TIP49, C-terminal "	NA	GO:0003678|DNA helicase activity||GO:0005524|ATP binding	NA
PtpAffx.13397.1.S1_at	A	A1TS	POPTR_0014s07410	POPTR_0014s07410 (11)	scaffold_14:5587502-5588033(+) (11)	NA	Q16MG9	ATPase ASNA1 homolog	AT1G01910.4	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g34970.1	"arsenical pump-driving ATPase, putative, expressed"	Medtr1g120500.1	Anion-transporting ATPase 	GO:0006875|cellular metal ion homeostasis	GO:0005524|ATP binding	NA
PtpAffx.133970.1.A1_s_at	A	A1TS	POPTR_0013s14900	POPTR_0013s14900 (11)	scaffold_13:14977482-14978645(-) (11)	NA	Q9VDQ7	Phagocyte signaling-impaired protein	AT5G58450.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g27870.1	expressed protein	Medtr3g033590.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133976.1.A1_at	A	A1TS	POPTR_0007s00330	POPTR_0007s00330 (11)	scaffold_7:96076-96347(-) (11)	NA	O80575	"6,7-dimethyl-8-ribityllumazine synthase, chloroplastic"	AT2G44050.1	"6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase "	LOC_Os04g42000.1	"6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	NA	GO:0009349|riboflavin synthase complex
PtpAffx.133977.1.A1_at	A	A1TS	POPTR_0015s12290	POPTR_0015s12290 (11)	scaffold_15:12609144-12609597(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.133979.1.A1_at	A	A1TS	POPTR_0003s19440	POPTR_0003s19440 (11)	scaffold_3:18168811-18169314(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13399.1.A1_at	A	A1TS	POPTR_0014s12790	POPTR_0014s12790 (11)	scaffold_14:9418865-9420423(-) (11)	NA	Q110D7	Peptide chain release factor 1	AT3G62910.1	Peptide chain release factor 1 	LOC_Os11g43600.1	"peptide chain release factor protein, putative, expressed"	Medtr7g130010.1	Peptide chain release factor 1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
PtpAffx.133994.1.A1_at	A	A1TS	POPTR_0005s16100	POPTR_0005s16100 (11)	scaffold_5:12747226-12748341(-) (11)	NA	Q7XJS0	Histone-lysine N-methyltransferase ASHR1	AT2G17900.1	SET domain group 37 	LOC_Os03g49730.2	"zinc finger protein, putative, expressed"	Medtr3g098090.1	"Histone-lysine N-methyltransferase ASHR1, putative "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.134011.1.A1_at	A	A1TS	POPTR_0005s25530	POPTR_0005s25530 (11)	scaffold_5:23766747-23766849(-) (11)	NA	P68428	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.134027.1.A1_at	A	A1TS	POPTR_0010s09860	POPTR_0010s09860 (10)	scaffold_10:10484011-10484178(+) (10)	NA	Q55CU8	Random slug protein 5	AT1G05370.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os03g11950.1	"SEC14 cytosolic factor family protein, putative, expressed"	Medtr1g132520.1	"Cellular retinaldehyde-binding/triple function, C-terminal; Phosphatidylinositol transfer protein-like, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134039.1.A1_at	A	A1TS	POPTR_0017s01970	POPTR_0017s01970 (11)	scaffold_17:1447618-1448000(+) (11)	NA	Q9M9P0	Expansin-A13	AT3G03220.1	expansin A13 	LOC_Os04g49410.1	"expansin precursor, putative, expressed"	Medtr5g084850.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134048.1.S1_at	A	A1TS	POPTR_0010s20580	POPTR_0010s20580 (10)	scaffold_10:18103924-18104199(+) (10)	NA	Q54TS4	Protein YIPF1 homolog	AT2G39805.1	Integral membrane Yip1 family protein 	LOC_Os05g38180.4	"Yip1 domain containing protein, expressed"	Medtr5g088310.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134049.1.A1_at	A	A1TS	POPTR_0008s07580	POPTR_0008s07580 (11)	scaffold_8:4632285-4632479(-) (11)	NA	Q10HL3	Endoribonuclease Dicer homolog 2a	AT3G03300.3	dicer-like 2 	LOC_Os03g38740.1	"Dicer, putative, expressed"	Medtr2g129960.1	"Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008026|ATP-dependent helicase activity||GO:0003677|DNA binding||GO:0004525|ribonuclease III activity||GO:0005524|ATP binding||GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
PtpAffx.134057.1.A1_s_at	A	A1TS	POPTR_0014s12210	POPTR_0014s12210 (11)	scaffold_14:9025625-9025878(-) (11)	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os03g22180.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.134058.1.A1_at	A	A1TS	POPTR_0017s12600	POPTR_0017s12600 (11)	scaffold_17:12807999-12809543(+) (11)	NA	NA	NA	AT5G39380.1	Plant calmodulin-binding protein-related 	LOC_Os03g11290.1	expressed protein	Medtr6g013960.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134095.1.A1_at	A	A1TS	POPTR_0017s06570	POPTR_0017s06570 (11)	scaffold_17:4992857-4993336(+) (11)	POPTR_0007s02590 (6)	O23044	Peroxidase 3	AT1G05260.1	Peroxidase superfamily protein 	LOC_Os06g46799.1	"peroxidase precursor, putative, expressed"	Medtr2g103700.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.134116.1.A1_at	A	A1TS	POPTR_0007s09640	POPTR_0007s09640 (11)	scaffold_7:9145451-9147255(-) (11)	NA	Q3U2J5	Uncharacterized protein C2orf34 homolog	AT4G35987.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os03g14020.1	"AGAP009131-PA, putative, expressed"	Medtr8g089670.1	"Uncharacterized protein C2orf34 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134120.1.A1_at	A	A1TS	POPTR_0005s18040	POPTR_0005s18040 (11)	scaffold_5:16051910-16052029(-) (11)	NA	NA	NA	AT3G50620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr5g017700.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134131.1.A1_at	A	A1TS	POPTR_0006s03380	POPTR_0006s03380 (11)	scaffold_6:2142178-2143058(-) (11)	NA	NA	NA	AT2G40820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT3G56480.1); Has 203 Blast hits to 195 proteins in 64 species: Archae - 3; Bacteria - 13; Metazoa - 26; Fungi - 15; Plants - 101; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). 	LOC_Os01g59130.2	"proline-rich family protein, putative, expressed"	Medtr7g106120.1	"3'-5'-exoribonuclease/ RNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134132.1.A1_at	A	A1TS	POPTR_0009s01700	POPTR_0009s01700 (9)	scaffold_9:2207760-2208263(-) (11)	NA	Q9ZTX9	Auxin response factor 4	AT5G60450.1	auxin response factor 4 	LOC_Os04g36054.1	"auxin response factor 9, putative, expressed"	Medtr4g081060.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.134134.1.A1_at	A	A1TS	POPTR_0014s12530	POPTR_0014s12530 (11)	scaffold_14:9226316-9227026(-) (11)	NA	P54278	Mismatch repair endonuclease PMS2	AT4G02460.1	"DNA mismatch repair protein, putative "	LOC_Os02g37920.1	expressed protein	Medtr1g108570.1	"ATP-binding region, ATPase-like; ; ; ; ; "	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.134162.1.A1_at	A	A1TS	POPTR_0004s06560	POPTR_0004s06560 (10)	scaffold_4:5283936-5284987(+) (10)	NA	Q8LEB2	Alcohol dehydrogenase-like 6	AT5G24760.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g42520.2	"dehydrogenase, putative, expressed"	Medtr6g083950.1	"Alcohol dehydrogenase, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.13417.1.S1_at	A	A1TS	POPTR_0010s11290	POPTR_0010s11290 (9)	scaffold_10:11609733-11610181(+) (9)	NA	Q5RCZ2	Cytochrome b561	AT1G14730.1	Cytochrome b561/ferric reductase transmembrane protein family 	LOC_Os03g50820.1	"cytochrome b561, putative, expressed"	CU633465_7.1	Cytochrome b561 / ferric reductase transmembrane CU633465.7 43513-41380 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.134171.1.A1_s_at	A	A1TS	POPTR_0006s21600	POPTR_0006s21600 (11)	scaffold_6:20638475-20640350(-) (11)	NA	Q54SW1	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179	AT3G11780.1	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134176.1.A1_at	A	A1TS	POPTR_0012s03570	POPTR_0012s03570 (11)	scaffold_12:2807438-2810496(-) (11)	NA	Q9LD37	"Probable cyclic nucleotide-gated ion channel 20, chloroplastic"	AT3G17700.1	cyclic nucleotide-binding transporter 1 	LOC_Os02g53340.2	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr6g074020.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.134187.6.A1_at	A	A1TA	POPTR_0002s21450	POPTR_0002s21450 (11)	scaffold_2:17953532-17957279(-) (11)	NA	NA	NA	AT2G32580.1	Protein of unknown function (DUF1068) 	LOC_Os03g56610.1	expressed protein	Medtr7g139680.1	Protein of unknown function DUF1068 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134212.1.A1_at	A	A1TS	POPTR_0008s10070	POPTR_0008s10070 (11)	scaffold_8:6283118-6283852(-) (11)	NA	Q8RWB8	E3 ubiquitin-protein ligase UPL6	AT3G17205.3	ubiquitin protein ligase 6 	LOC_Os05g06690.2	"HECT-domain domain containing protein, expressed"	Medtr2g037340.1	IQ calmodulin-binding region; HECT 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.134213.1.A1_at	A	A1TS	POPTR_0001s44880	POPTR_0001s44880 (11)	scaffold_1:45251971-45253071(-) (11)	NA	Q5M759	Vacuolar protein sorting-associated protein 22 homolog 1	AT4G27040.4	EAP30/Vps36 family protein 	LOC_Os09g36020.1	"EAP30/Vps36 family domain containing protein, expressed"	Medtr3g068260.1	EAP30 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134221.1.A1_at	A	A1TS	POPTR_0005s12520	POPTR_0005s12520 (10)	scaffold_5:9288846-9289325(-) (10)	NA	Q9FL03	Scarecrow-like protein 4	AT5G66770.1	GRAS family transcription factor 	LOC_Os03g51330.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g107060.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134230.1.A1_at	A	A1MS	POPTR_0016s04850	POPTR_0016s04850 (9)	scaffold_16:2923880-2925194(+) (11)//scaffold_453:13203-13617(-) (10)	NA	NA	NA	AT5G06810.1	Mitochondrial transcription termination factor family protein 	LOC_Os08g40630.2	"mTERF domain containing protein, expressed"	Medtr7g111650.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134231.1.A1_at	A	A1TS	POPTR_0012s00990	POPTR_0012s00990 (11)	scaffold_12:661256-661804(-) (11)	NA	Q9FLX3	F-box protein At5g52880	AT5G52880.1	F-box family protein 	LOC_Os05g45040.1	"OsFBX170 - F-box domain containing protein, expressed"	Medtr1g125970.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134238.1.A1_a_at	A	A1TS	POPTR_0002s19610	POPTR_0002s19610 (11)	scaffold_2:15561901-15562315(+) (11)	NA	NA	NA	AT2G47350.1	HIT zinc finger ;PAPA-1-like conserved region 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134238.1.A1_at	A	A1TS	POPTR_0002s19610	POPTR_0002s19610 (9)	scaffold_2:15561993-15562397(+) (9)	NA	NA	NA	AT2G47350.1	HIT zinc finger ;PAPA-1-like conserved region 	LOC_Os12g37430.2	"PAPA-1-like conserved region family protein, expressed"	Medtr7g133070.1	"PAPA-1-like conserved region; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134240.1.A1_at	A	A1TS	POPTR_0010s14870	POPTR_0010s14870 (11)	scaffold_10:14341694-14343361(+) (11)	NA	Q96JB2	Conserved oligomeric Golgi complex subunit 3	AT1G73430.2	sec34-like family protein 	LOC_Os08g34970.1	"conserved oligomeric Golgi complex component 3, putative, expressed"	Medtr8g133280.1	Sec34-like protein 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane||GO:0005801|cis-Golgi network
PtpAffx.134252.1.A1_at	A	A1TS	POPTR_0019s10040	POPTR_0019s10040 (11)	scaffold_19:11673994-11674293(+) (11)	NA	O81852	"Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic"	AT4G19710.2	aspartate kinase-homoserine dehydrogenase ii 	LOC_Os08g25390.1	"bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g132760.2	"Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016491|oxidoreductase activity||GO:0050661|NADP or NADPH binding	NA
PtpAffx.134258.1.A1_at	A	A1TS	POPTR_0011s00520	POPTR_0011s00520 (10)	scaffold_11:235413-235938(+) (10)	NA	Q93V99	Homeobox-leucine zipper protein PROTODERMAL FACTOR 2	AT4G04890.1	protodermal factor 2 	LOC_Os04g53540.4	"homeobox and START domains containing protein, putative, expressed"	Medtr2g103900.2	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.134259.1.A1_at	A	A1TS	POPTR_0010s20760	POPTR_0010s20760 (11)	scaffold_10:18227234-18227656(+) (11)	NA	NA	NA	AT3G11420.1	Protein of unknown function (DUF604) 	LOC_Os03g16334.1	"fringe-related protein, putative, expressed"	Medtr7g088020.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134267.1.A1_s_at	A	A1TS	POPTR_0006s18630	POPTR_0006s18630 (11)	scaffold_6:17198665-17199069(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G52450.1	MATE efflux family protein 	LOC_Os06g29844.1	"MATE efflux family protein, putative, expressed"	Medtr6g086210.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.134273.1.A1_at	A	A1MS	POPTR_0012s02580	POPTR_0012s02580 (11)	scaffold_12:2123582-2124050(+) (11)	NA	Q9LFL5	Pentatricopeptide repeat-containing protein At5g16860	AT5G16860.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g10800.1	"pentatricopeptide, putative, expressed"	Medtr1g008660.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134284.1.A1_at	A	A1TS	POPTR_0006s27850	POPTR_0006s27850 (11)	scaffold_6:25704739-25705264(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134305.1.A1_at	A	A1TA	POPTR_0006s19840	POPTR_0006s19840 (11)	scaffold_6:18852591-18853055(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134307.1.A1_at	A	A1TS	POPTR_0001s04740	POPTR_0001s04740 (10)	scaffold_1:3661597-3662169(-) (10)//scaffold_1020:2281-2835(+) (10)//scaffold_1020:6366-6936(+) (10)	POPTR_1020s00210 (7)//POPTR_1020s00200 (6)	Q10PP8	Metal tolerance protein 4	AT3G58060.1	Cation efflux family protein 	LOC_Os03g12530.1	"cation efflux family protein, putative, expressed"	Medtr3g083790.1	Cation efflux protein 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	GO:0016020|membrane
PtpAffx.134316.1.A1_at	A	A1TS	POPTR_0030s00210	POPTR_0030s00210 (9)	scaffold_30:23916-24156(-) (9)	NA	Q5F3K4	WD repeat-containing protein 48	AT3G05090.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g06810.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g140230.1	WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134322.1.A1_at	A	A1TS	POPTR_0452s00200	POPTR_0452s00200 (11)	scaffold_452:140-549(+) (11)	NA	NA	NA	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	Medtr4g012380.1	TIR; NB-ARC; AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134328.1.A1_at	A	A1TS	POPTR_0002s13900	POPTR_0002s13900 (11)	scaffold_2:10307591-10307887(-) (11)	NA	Q9QZR0	E3 ubiquitin-protein ligase RNF25	AT3G60300.1	RWD domain-containing protein 	LOC_Os11g35870.1	"RWD domain containing protein, expressed"	Medtr5g027310.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134329.1.A1_at	A	A1TS	POPTR_0010s19480	POPTR_0010s19480 (11)	scaffold_10:17364548-17364939(-) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134338.1.A1_at	A	A1TS	POPTR_0016s12740	POPTR_0016s12740 (11)	scaffold_16:12110113-12110633(-) (11)	NA	Q9UI26	Importin-11	AT3G08960.1	ARM repeat superfamily protein 	LOC_Os07g49260.1	"importin subunit beta, putative, expressed"	Medtr7g075610.1	"Importin-beta, N-terminal "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.134341.1.A1_at	A	A1TS	POPTR_0019s14080	POPTR_0019s14080 (11)	scaffold_19:14842040-14842499(+) (11)	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT4G28100.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18050.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os07g37156.1	expressed protein	Medtr2g102990.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134351.1.A1_at	A	A1TS	POPTR_0019s07820	POPTR_0019s07820 (11)	scaffold_19:9043972-9044013(-) (11)	NA	Q9M9M9	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	AT3G03100.1	"NADH:ubiquinone oxidoreductase, 17.2kDa subunit "	LOC_Os10g42840.1	"NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed"	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity||GO:0009055|electron carrier activity	GO:0016020|membrane
PtpAffx.134355.1.A1_at	A	A1TS	POPTR_0012s00390	POPTR_0012s00390 (11)	scaffold_12:128757-129078(+) (11)	NA	NA	NA	AT5G24660.1	response to low sulfur 2 	NA	NA	Medtr3g122000.1	"UP-9A, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134361.1.A1_s_at	A	A1TS	POPTR_0003s14170	POPTR_0003s14170 (11)	scaffold_3:14303954-14304052(+) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT1G64500.1	Glutaredoxin family protein 	LOC_Os01g13480.1	"glutaredoxin, putative, expressed"	Medtr7g127470.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.134364.1.S1_a_at	A	A1TS	POPTR_0012s03350	POPTR_0012s03350 (11)	scaffold_12:2653303-2653605(-) (11)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.134364.2.S1_at	A	A1TS	POPTR_0012s03350	POPTR_0012s03350 (11)	scaffold_12:2653225-2653531(-) (11)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
PtpAffx.134366.1.A1_at	A	A1TS	POPTR_0006s11000	POPTR_0006s11000 (11)	scaffold_6:8346734-8347795(-) (11)	NA	NA	NA	AT2G38570.1	CONTAINS InterPro DOMAIN/s: PRC-barrel-like (InterPro:IPR011033); Has 300 Blast hits to 300 proteins in 81 species: Archae - 0; Bacteria - 135; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 128 (source: NCBI BLink). 	LOC_Os03g21630.2	"PRC-barrel domain protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134377.1.A1_at	A	A1TS	POPTR_0010s00750	POPTR_0010s00750 (11)	scaffold_10:462589-463093(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g20830.1	"heavy metal-associated domain containing protein, expressed"	Medtr8g138440.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.13438.1.S1_s_at	A	A1TS	POPTR_0017s11530	POPTR_0017s11530 (11)	scaffold_17:11267294-11268842(-) (11)	NA	Q9LHA4	V-type proton ATPase subunit d2	AT3G28715.1	"ATPase, V0/A0 complex, subunit C/D "	LOC_Os01g40470.1	"vacuolar ATP synthase subunit d, putative, expressed"	Medtr7g009000.1	"H+-transporting two-sector ATPase, C (AC39) subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.134385.1.A1_at	A	A1TS	POPTR_0017s11760	POPTR_0017s11760 (11)	scaffold_17:11585891-11586898(+) (11)	NA	Q9CA64	Transcription factor bHLH135	AT3G28857.1	basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g26460.1	"bHLH family protein, putative, expressed"	Medtr5g040160.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.13439.1.S1_s_at	A	A1TS	POPTR_0013s14800	POPTR_0013s14800 (11)	scaffold_13:14919810-14920360(-) (11)	NA	Q9SS94	Cell division control protein 48 homolog C	AT3G01610.1	cell division cycle 48C 	LOC_Os06g01980.1	"AAA family ATPase, putative, expressed"	Medtr2g007090.1	"Peptidase M14, carboxypeptidase A; AAA ATPase, central region "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.134399.1.A1_at	A	A1TS	POPTR_0008s14470	POPTR_0008s14470 (11)	scaffold_8:9606626-9606814(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1344.1.A1_at	A	A1TS	POPTR_0003s16530	POPTR_0003s16530 (9)	scaffold_3:16115043-16116055(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G13160.1	Protein kinase superfamily protein 	LOC_Os02g30900.1	"protein kinase domain containing protein, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13443.2.S1_at	A	A2TS	POPTR_0017s05910	POPTR_0017s05910 (10)//POPTR_2108s00200 (9)	scaffold_17:4579213-4579600(+) (10)//scaffold_2108:183-570(-) (10)	NA	NA	NA	AT2G43310.1	Ribosomal L18p/L5e family protein 	NA	NA	Medtr2g118290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134432.1.A1_at	A	A1TS	POPTR_0012s03730	POPTR_0012s03730 (11)	scaffold_12:2945616-2946139(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G01940.1	C2H2-like zinc finger protein 	LOC_Os09g27650.2	"ZOS9-14 - C2H2 zinc finger protein, expressed"	Medtr8g018830.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.134444.1.A1_s_at	A	A1TS	POPTR_0001s13490	POPTR_0001s13490 (11)	scaffold_1:10564860-10565393(-) (11)	NA	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os08g42080.1	"ACR5, putative, expressed"	Medtr7g022460.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.13445.1.A1_at	A	A1TS	POPTR_0005s17970	POPTR_0005s17970 (10)	scaffold_5:15837073-15837588(-) (10)	NA	Q8L7S0	Probable ubiquitin-like-specific protease 2B	AT1G09730.1	Cysteine proteinases superfamily protein 	LOC_Os05g11770.1	"ulp1 protease family protein, putative, expressed"	Medtr3g149330.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.134451.1.A1_at	A	A1TS	POPTR_0006s00570	POPTR_0006s00570 (11)	scaffold_6:303320-303610(+) (11)	NA	Q0DCT8	Protein kinase G11A	AT5G47750.1	D6 protein kinase like 2 	LOC_Os08g38320.3	"AGC_PVPK_like_kin82y.14 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.134453.1.A1_at	A	A1MS	POPTR_0013s13040	POPTR_0013s13040 (11)	scaffold_13:13605004-13605270(-) (11)	NA	NA	NA	AT5G60030.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr1g020400.1	"AGAP002737-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134458.1.A1_at	A	A1TS	POPTR_0015s07640	POPTR_0015s07640 (11)	scaffold_15:8942585-8942626(+) (11)	NA	Q02283	Homeobox-leucine zipper protein HAT5	AT3G01470.1	homeobox 1 	LOC_Os02g49700.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g113090.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.13446.1.S1_at	A	A1TS	POPTR_0018s11350	POPTR_0018s11350 (11)	scaffold_18:12123968-12124505(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134474.1.A1_at	A	A1TS	POPTR_0005s09410	POPTR_0005s09410 (11)	scaffold_5:6562364-6563871(-) (11)	NA	Q0WPR4	Serine carboxypeptidase-like 34	AT5G23210.1	serine carboxypeptidase-like 34 	LOC_Os02g42310.1	"OsSCP8 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g100960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.134482.1.A1_at	A	A1TS	POPTR_0003s10220	POPTR_0003s10220 (11)	scaffold_3:11300935-11301457(-) (11)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1345.1.A1_at	A	A1TS	POPTR_0017s11590	POPTR_0017s11590 (9)	scaffold_17:11382027-11382546(-) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT1G74690.1	IQ-domain 31 	LOC_Os05g45930.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr8g112590.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134503.1.A1_at	A	A1TS	POPTR_0016s01980	POPTR_0016s01980 (11)	scaffold_16:907873-908351(-) (11)	NA	Q9LIE5	Protein FAR-RED ELONGATED HYPOCOTYL 3	AT3G22170.2	far-red elongated hypocotyls 3 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.13452.1.S1_at	A	A1TS	POPTR_0007s04570	POPTR_0007s04570 (11)	scaffold_7:2830852-2838910(+) (11)	POPTR_0007s04560 (6)	P57681	Probable prenylcysteine oxidase	AT5G63910.1	farnesylcysteine lyase 	LOC_Os04g59630.1	"prenylcysteine oxidase 1 precursor, putative, expressed"	Medtr3g142890.1	Prenylcysteine lyase 	GO:0030328|prenylcysteine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	"GO:0016670|""oxidoreductase activity, acting on sulfur group of donors, oxygen as acceptor"""	NA
PtpAffx.134522.1.A1_at	A	A1TS	POPTR_0013s01340	POPTR_0013s01340 (9)	scaffold_13:749554-749676(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134524.1.A1_at	A	A1TS	POPTR_0014s09770	POPTR_0014s09770 (11)	scaffold_14:7284467-7284779(+) (11)	NA	Q40191	Ras-related protein Rab11A	AT1G01200.1	RAB GTPase homolog A3 	LOC_Os09g35860.1	"ras-related protein, putative, expressed"	Medtr8g029570.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.134527.1.A1_at	A	A2TS	POPTR_0016s03390	POPTR_0016s03390 (11)//POPTR_0016s04660 (9)	scaffold_16:1758356-1758822(+) (11)//scaffold_16:2770022-2770465(-) (9)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.134537.1.A1_a_at	A	A2TS	POPTR_0001s29840	POPTR_0001s29840 (11)//POPTR_0001s29870 (9)	scaffold_1:28417881-28418507(-) (9)//scaffold_1:28432004-28432775(-) (11)//scaffold_1:28456027-28457063(-) (9)//scaffold_1:28467958-28468719(-) (11)//scaffold_1:28501392-28502126(+) (11)	NA	Q9C7Z9	Serine carboxypeptidase-like 18	AT1G73300.1	serine carboxypeptidase-like 2 	LOC_Os11g42390.1	"OsSCP64 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g022160.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.134543.1.A1_a_at	A	A1TS	POPTR_0006s04510	POPTR_0006s04510 (10)	scaffold_6:3074998-3075324(+) (10)	NA	Q9M2L4	"Putative calcium-transporting ATPase 11, plasma membrane-type"	AT3G57330.1	autoinhibited Ca2+-ATPase 11 	LOC_Os12g04220.1	"calcium-transporting ATPase, plasma membrane-type, putative"	Medtr4g118290.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.134543.1.A1_at	A	A1TS	POPTR_0006s04510	POPTR_0006s04510 (10)	scaffold_6:3074249-3074984(+) (10)	NA	Q9M2L4	"Putative calcium-transporting ATPase 11, plasma membrane-type"	AT3G57330.1	autoinhibited Ca2+-ATPase 11 	LOC_Os12g04220.1	"calcium-transporting ATPase, plasma membrane-type, putative"	Medtr4g118290.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.134549.1.S1_at	A	A1TS	POPTR_0003s13790	POPTR_0003s13790 (11)	scaffold_3:14075719-14076071(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G41800.1	Transmembrane amino acid transporter family protein 	LOC_Os01g43320.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13455.1.S1_at	A	A1TS	POPTR_0009s16510	POPTR_0009s16510 (10)	scaffold_9:12519744-12521593(+) (10)	NA	Q9ZQH1	Probable calcium-binding protein CML48	AT2G27480.1	Calcium-binding EF-hand family protein 	LOC_Os08g44390.2	"EF hand family protein, putative, expressed"	Medtr2g107710.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134559.1.A1_at	A	A1TS	POPTR_0013s11160	POPTR_0013s11160 (11)	scaffold_13:11835038-11835363(-) (11)	NA	Q0WP01	Probable peptide/nitrate transporter At1g22540	AT1G22540.1	Major facilitator superfamily protein 	LOC_Os01g65110.1	"POT family protein, expressed"	Medtr3g012600.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.134562.1.A1_at	A	A1TS	POPTR_0018s07360	POPTR_0018s07360 (11)	scaffold_18:7569685-7571898(+) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G43220.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.1	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134562.2.A1_a_at	A	A1TS	POPTR_0018s07360	POPTR_0018s07360 (11)	scaffold_18:7569601-7569678(+) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G43220.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.1	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134566.1.A1_at	A	A1TS	POPTR_0002s25580	POPTR_0002s25580 (11)	scaffold_2:22658414-22658569(-) (11)	NA	P50053	Ketohexokinase	AT4G28706.3	pfkB-like carbohydrate kinase family protein 	LOC_Os08g45180.1	"kinase, pfkB family, putative, expressed"	Medtr7g117720.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134567.1.A1_at	A	A1TA	POPTR_0019s00960	POPTR_0019s00960 (11)	scaffold_19:733174-733599(-) (11)	NA	NA	NA	AT5G14930.2	senescence-associated gene 101 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr6g008690.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.134577.1.A1_at	A	A1TS	POPTR_0002s14580	POPTR_0002s14580 (10)	scaffold_2:10852439-10852705(+) (10)	NA	NA	NA	AT3G60680.1	Plant protein of unknown function (DUF641) 	LOC_Os10g36400.1	"GIL1, putative, expressed"	Medtr4g135700.1	"Protein of unknown function DUF641, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134586.1.A1_at	A	A1TS	POPTR_0009s06080	POPTR_0009s06080 (11)	scaffold_9:5990259-5991348(+) (11)	NA	Q0WRX3	Serine carboxypeptidase-like 40	AT3G63470.1	serine carboxypeptidase-like 40 	LOC_Os07g46350.1	"OsSCP40 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr3g040960.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.134594.1.A1_s_at	A	A1TS	POPTR_0001s01610	POPTR_0001s01610 (11)	scaffold_1:1207684-1208020(+) (11)	NA	Q03516	Uncharacterized protein RSN1	AT1G32090.1	early-responsive to dehydration stress protein (ERD4) 	LOC_Os10g42820.1	"early-responsive to dehydration protein-related, putative, expressed"	Medtr5g027680.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.134612.1.A1_at	A	A1TS	POPTR_0002s05800	POPTR_0002s05800 (9)	scaffold_2:3805943-3806323(+) (10)	NA	NA	NA	AT1G06660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g56590.1	expressed protein	Medtr5g098090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134617.1.A1_at	A	A1TS	POPTR_0005s05250	POPTR_0005s05250 (11)	scaffold_5:3477396-3477624(+) (11)	NA	NA	NA	AT5G28150.1	Plant protein of unknown function (DUF868) 	LOC_Os03g59200.1	expressed protein	Medtr7g140620.1	"Protein of unknown function DUF868, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13462.1.S1_at	A	A1TS	POPTR_0009s15710	POPTR_0009s15710 (10)	scaffold_9:12081341-12081605(-) (11)	NA	O93309	Structural maintenance of chromosomes protein 3	AT2G27170.2	Structural maintenance of chromosomes (SMC) family protein 	LOC_Os02g04050.1	"chromosome segregation protein, putative, expressed"	Medtr5g094200.1	"condensin complex component SMC3, related "	GO:0016032|viral reproduction||GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane||GO:0005694|chromosome
PtpAffx.13465.1.S1_a_at	A	A1TS	POPTR_0002s08280	POPTR_0002s08280 (11)	scaffold_2:5779935-5780959(+) (11)	NA	Q9SFH9	"Delta-aminolevulinic acid dehydratase, chloroplastic"	AT1G69740.2	Aldolase superfamily protein 	LOC_Os06g49110.3	"delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed"	Medtr3g100480.1	Delta-aminolevulinic acid dehydratase 	GO:0033014|tetrapyrrole biosynthetic process	GO:0004655|porphobilinogen synthase activity||GO:0046872|metal ion binding	NA
PtpAffx.134656.1.A1_at	A	A1TS	POPTR_0026s00240	POPTR_0026s00240 (11)	scaffold_26:270741-271001(+) (11)	NA	NA	NA	AT4G15800.1	ralf-like 33 	LOC_Os12g35670.1	"RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed"	Medtr8g138780.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134659.1.A1_at	A	A1TS	POPTR_0011s09300	POPTR_0011s09300 (11)	scaffold_11:11558516-11558728(-) (11)	NA	Q9UHW9	Solute carrier family 12 member 6	AT1G30450.2	cation-chloride co-transporter 1 	LOC_Os08g23440.1	"amino acid permease family protein, putative, expressed"	Medtr2g055760.1	Interleukin-6/G-CSF/MGF; Amino acid permease-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134679.1.A1_at	A	A1TA	POPTR_0016s13550	POPTR_0016s13550 (11)	scaffold_16:12730761-12731048(+) (11)	NA	Q9M007	Cation/H(+) antiporter 27	AT5G01680.1	cation/H+ exchanger 26 	LOC_Os05g40650.1	"ATCHX, putative, expressed"	Medtr5g082360.1	Sodium/hydrogen exchanger 	GO:0006812|cation transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.134681.1.A1_at	A	A1TS	POPTR_0004s01520	POPTR_0004s01520 (10)	scaffold_4:869224-869746(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g146730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13469.1.S1_at	A	A1TS	POPTR_0006s16610	POPTR_0006s16610 (10)	scaffold_6:14484090-14484596(-) (10)	NA	Q07469	Bark storage protein A	AT4G28940.1	Phosphorylase superfamily protein 	LOC_Os05g13970.2	"phosphorylase domain containing protein, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.134696.1.A1_at	A	A1TS	POPTR_0006s08510	POPTR_0006s08510 (11)	scaffold_6:6198456-6198742(+) (11)	NA	NA	NA	AT3G09410.1	Pectinacetylesterase family protein 	LOC_Os05g02120.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134700.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13470.1.S1_s_at	A	A1TS	POPTR_0002s02010	POPTR_0002s02010 (11)	scaffold_2:1077172-1077395(+) (11)	NA	O65351	Subtilisin-like protease	AT1G20160.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os09g30458.1	"subtilisin-like protease, putative, expressed"	Medtr3g139400.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.134708.1.A1_at	A	A1TS	POPTR_0014s10370	POPTR_0014s10370 (11)	scaffold_14:7753372-7766374(-) (11)	POPTR_0014s10340 (6)	Q7GCL7	NAC domain-containing protein 74	AT5G24590.2	TCV-interacting protein 	LOC_Os08g06140.2	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.134721.1.S1_at	A	A1TS	POPTR_0015s00470	POPTR_0015s00470 (9)	scaffold_15:268586-269064(+) (11)	NA	Q9XGN1	Protein TRANSPARENT TESTA GLABRA 1	AT5G24520.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g45810.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g122570.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134742.1.S1_at	A	A1MS	POPTR_0016s05660	POPTR_0016s05660 (11)	scaffold_16:3589637-3590149(-) (11)	NA	NA	NA	AT3G57400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52500.1); Has 38 Blast hits to 38 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134772.1.S1_s_at	A	A1TS	POPTR_0012s07160	POPTR_0012s07160 (11)	scaffold_12:7935513-7935891(+) (11)	NA	Q84K47	ABC transporter A family member 2	AT3G47730.1	ATP-binding cassette A2 	LOC_Os08g30740.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g149810.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.134776.1.S1_at	A	A1TS	POPTR_0015s03790	POPTR_0015s03790 (9)	scaffold_15:3676999-3679296(-) (9)	NA	NA	NA	AT1G67060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 283 Blast hits to 281 proteins in 136 species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). 	LOC_Os02g12870.1	expressed protein	Medtr7g093340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134798.1.S1_at	A	A1TS	POPTR_0002s00550	POPTR_0002s00550 (11)	scaffold_2:215546-216354(+) (11)	NA	NA	NA	AT1G76510.2	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr3g159760.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.134832.1.S1_s_at	A	A1TS	POPTR_0010s15000	POPTR_0010s15000 (11)	scaffold_10:14412743-14413989(-) (11)	NA	P78316	Nucleolar protein 14	AT1G69070.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). 	LOC_Os03g40110.1	"nop14-like family protein, expressed"	Medtr1g043170.1	Nop14-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134834.1.S1_at	A	A1TS	POPTR_0005s23730	POPTR_0005s23730 (11)	scaffold_5:22489325-22490239(+) (11)	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT3G63400.3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g08190.1	"cyclophilin, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.13485.1.A1_at	A	A1TS	POPTR_0011s04470	POPTR_0011s04470 (11)	scaffold_11:4447704-4448174(+) (11)	NA	Q38945	PAP-specific phosphatase HAL2-like	AT5G54390.1	HAL2-like 	LOC_Os02g56170.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.134857.1.S1_a_at	A	A2TS	POPTR_0001s03780	POPTR_0003s20690 (11)//POPTR_0001s03780 (11)	scaffold_1:3065594-3068494(-) (11)//scaffold_3:19164182-19167110(-) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134857.2.S1_at	A	A1TS	POPTR_0001s03780	POPTR_0001s03780 (11)	scaffold_1:3068140-3068575(-) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134863.1.S1_at	A	A1TS	POPTR_0009s10380	POPTR_0009s10380 (11)	scaffold_9:8917514-8918401(-) (11)	NA	Q9LDD8	"Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial"	AT4G34030.1	3-methylcrotonyl-CoA carboxylase 	LOC_Os08g32850.1	"methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed"	Medtr4g129940.1	"Acetyl-coenzyme A carboxyltransferase, C-terminal "	NA	GO:0016874|ligase activity	NA
PtpAffx.134873.1.S1_s_at	A	A1TS	POPTR_0005s05290	POPTR_0005s05290 (9)	scaffold_5:3498572-3498604(-) (9)	NA	Q5M7J9	Tetratricopeptide repeat protein 35	AT3G04830.1	Protein prenylyltransferase superfamily protein 	LOC_Os02g03470.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr7g140640.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134886.1.S1_at	A	A1TS	POPTR_0001s20770	POPTR_0001s20770 (11)	scaffold_1:18934658-18934857(-) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134886.1.S1_s_at	A	A2TS	POPTR_0001s20770	POPTR_0001s20770 (11)//POPTR_0003s02410 (11)	scaffold_1:18934212-18934916(-) (11)//scaffold_3:2498567-2499278(+) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134891.1.S1_at	A	A1TS	POPTR_0002s12630	POPTR_0002s12630 (9)	scaffold_2:9410316-9412233(+) (9)	NA	NA	NA	AT1G45976.1	S-ribonuclease binding protein 1 	LOC_Os03g15730.1	"S-RNase-binding protein, putative, expressed"	Medtr1g024220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13492.1.S1_at	A	A1TS	POPTR_0004s03700	POPTR_0004s03700 (11)	scaffold_4:2560737-2561158(-) (11)	NA	NA	NA	AT1G61240.4	Protein of unknown function (DUF707) 	LOC_Os07g37760.2	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr2g014270.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134925.1.S1_s_at	A	A1TS	POPTR_0016s04320	POPTR_0016s04320 (11)	scaffold_16:2499891-2501199(-) (11)	NA	Q5R8D8	DnaJ homolog subfamily C member 7	AT2G41520.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os05g31062.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g108140.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.134939.1.S1_s_at	A	A1TS	POPTR_0004s03490	POPTR_0004s03490 (10)	scaffold_4:2408543-2409461(+) (11)	NA	O65418	Anaphase-promoting complex subunit 4	AT4G21530.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g54490.1	"nucleotide binding protein, putative, expressed"	Medtr4g125250.1	"nucleotide binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134941.1.A1_at	A	A1TS	POPTR_0003s14320	POPTR_0003s14320 (11)	scaffold_3:14415895-14416241(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01960.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.134976.1.S1_at	A	A1TS	POPTR_0017s06920	POPTR_0017s06920 (11)	scaffold_17:5302819-5303299(-) (11)	NA	Q7XAS7	"Isoprene synthase, chloroplastic"	AT3G25810.1	Terpenoid cyclases/Protein prenyltransferases superfamily protein 	LOC_Os08g04500.1	"terpene synthase, putative, expressed"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
PtpAffx.13498.1.A1_s_at	A	A1TS	POPTR_0002s25000	POPTR_0002s25000 (11)	scaffold_2:22219276-22219721(+) (11)	NA	Q9SRT0	U-box domain-containing protein 9	AT3G07360.1	plant U-box 9 	LOC_Os02g28720.1	"spotted leaf 11, putative, expressed"	Medtr7g143240.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.134989.1.S1_at	A	A1TS	POPTR_0002s15350	POPTR_0002s15350 (9)	scaffold_2:11496162-11496632(+) (9)	NA	P93733	Phospholipase D beta 1	AT2G42010.1	phospholipase D beta 1 	LOC_Os10g38060.2	"phospholipase D, putative, expressed"	Medtr7g083520.1	"C2; Phospholipase D, plant "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.13499.1.S1_s_at	A	A1TS	POPTR_0002s25710	POPTR_0002s25710 (11)	scaffold_2:22804490-22804993(+) (11)	NA	Q7GB25	ABC transporter C family member 5	AT1G04120.1	multidrug resistance-associated protein 5 	LOC_Os03g04920.1	"multidrug resistance-associated protein, putative, expressed"	Medtr7g117090.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.135.1.S1_a_at	A	A1TS	POPTR_0003s10620	POPTR_0003s10620 (11)	scaffold_3:11549853-11550729(+) (11)	NA	Q0WWQ1	Autophagy-related protein 3	AT5G61500.1	autophagy 3 (APG3) 	LOC_Os01g10290.2	"autophagy-related protein 3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1350.1.S1_at	A	A1TS	POPTR_0019s12130	POPTR_0019s12130 (11)	scaffold_19:13268528-13268980(-) (11)	NA	Q9M2K6	"Glucan endo-1,3-beta-glucosidase-like protein 1"	AT3G58100.1	plasmodesmata callose-binding protein 5 	LOC_Os06g34660.1	"X8 domain containing protein, expressed"	AC233678_6.1	X8 AC233678.1 26026-27089 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1350.3.S1_at	A	A1TS	POPTR_0013s12380	POPTR_0013s12380 (11)	scaffold_13:13015167-13015374(-) (11)	NA	Q9M2K6	"Glucan endo-1,3-beta-glucosidase-like protein 1"	AT3G58100.1	plasmodesmata callose-binding protein 5 	LOC_Os06g34660.1	"X8 domain containing protein, expressed"	AC233675_22.1	X8 AC233675.1 104814-106418 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135027.1.S1_at	A	A1TS	POPTR_0013s03330	POPTR_0013s03330 (11)	scaffold_13:2033278-2033786(-) (11)	NA	Q9ZVN2	"Acyltransferase-like protein At1g54570, chloroplastic"	AT1G54570.1	Esterase/lipase/thioesterase family protein 	LOC_Os01g26039.1	expressed protein	Medtr7g140210.1	Diacylglycerol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135079.1.S1_s_at	A	A1TS	POPTR_0004s10180	POPTR_0004s10180 (11)	scaffold_4:8753944-8755205(+) (11)	POPTR_0017s13890 (6)	Q55403	Thylakoid membrane protein slr0575	AT5G38660.1	acclimation of photosynthesis to  environment 	LOC_Os08g27010.1	"APE1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135080.1.S1_s_at	A	A1TS	POPTR_0015s02230	POPTR_0015s02230 (11)	scaffold_15:1565486-1566715(-) (11)	NA	Q9FGM0	"ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial"	AT5G53170.1	FTSH protease 11 	LOC_Os01g43150.1	"OsFtsH9  FtsH protease, homologue of AtFtsH11, expressed"	Medtr3g139890.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.135082.1.S1_at	A	A1TS	POPTR_0002s25900	POPTR_0002s25900 (11)	scaffold_2:22914924-22915103(+) (11)	NA	Q9FNC9	Mitochondrial import receptor subunit TOM22 homolog 2	AT5G43970.1	translocase of outer membrane 22-V 	LOC_Os02g29400.1	expressed protein	Medtr1g065560.1	"Mitochondrial import translocase, subunit Tom22 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135096.1.S1_at	A	A1TS	POPTR_0005s23150	POPTR_0005s23150 (11)	scaffold_5:21959399-21961167(-) (11)	NA	O31743	Ribosome biogenesis GTPase A	AT4G02790.1	GTP-binding family protein 	LOC_Os05g35540.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr7g108550.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.135096.2.S1_a_at	A	A1TS	POPTR_0005s23150	POPTR_0005s23150 (10)	scaffold_5:21961684-21962240(-) (10)	NA	O31743	Ribosome biogenesis GTPase A	AT4G02790.1	GTP-binding family protein 	LOC_Os05g35540.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr7g108550.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.1351.1.A1_at	A	A1TS	POPTR_0001s36870	POPTR_0001s36870 (11)	scaffold_1:35623701-35624153(-) (11)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT1G30360.1	Early-responsive to dehydration stress protein (ERD4) 	LOC_Os07g05570.1	"ERD4 protein, putative, expressed"	Medtr2g022330.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.1351.2.S1_s_at	A	A1TS	POPTR_0018s01790	POPTR_0018s01790 (11)	scaffold_18:1634348-1634755(-) (11)	NA	Q8LF20	Putative clathrin assembly protein At2g25430	AT2G25430.1	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related 	LOC_Os03g16800.2	"clathrin assembly protein, putative, expressed"	Medtr3g137180.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.135110.1.S1_at	A	A1TS	POPTR_0010s09260	POPTR_0010s09260 (10)	scaffold_10:10129912-10131435(-) (10)	NA	NA	NA	AT4G14746.1	CONTAINS InterPro DOMAIN/s: EGF-like (InterPro:IPR006210); Has 259 Blast hits to 234 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os03g06580.2	"MTN26L2 - MtN26 family protein precursor, expressed"	Medtr7g140750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13512.1.S1_s_at	A	A1TS	POPTR_0012s09650	POPTR_0012s09650 (9)	scaffold_12:10616269-10616301(-) (9)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117330.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.13512.2.S1_at	A	A1TS	POPTR_0012s09660	POPTR_0012s09660 (11)	scaffold_12:10627956-10630972(-) (11)	POPTR_0012s09670 (7)	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr3g117340.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.135197.1.S1_at	A	A1TS	POPTR_0010s22010	POPTR_0010s22010 (11)	scaffold_10:19099451-19099968(+) (11)	NA	Q9LX66	Receptor-like protein kinase HERK 1	AT3G46290.1	hercules receptor kinase 1 	LOC_Os06g22810.1	"TKL_IRAK_CrRLK1L-1.14 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr4g079470.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1352.2.A1_at	A	A1TA	POPTR_0007s14250	POPTR_0007s14250 (9)	scaffold_7:14087584-14087851(+) (9)	NA	Q9T074	Phosphoenolpyruvate carboxykinase [ATP]	AT4G37870.1	phosphoenolpyruvate carboxykinase 1 	LOC_Os03g15050.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	Medtr5g032160.1	Phosphoenolpyruvate carboxykinase (ATP); 	GO:0044283|small molecule biosynthetic process||GO:0006094|gluconeogenesis||GO:0044281|small molecule metabolic process	GO:0004612|phosphoenolpyruvate carboxykinase (ATP) activity||GO:0005524|ATP binding	NA
PtpAffx.1352.3.A1_s_at	A	A1TS	POPTR_0007s14250	POPTR_0007s14250 (11)	scaffold_7:14087511-14088173(-) (11)	NA	Q9T074	Phosphoenolpyruvate carboxykinase [ATP]	AT4G37870.1	phosphoenolpyruvate carboxykinase 1 	LOC_Os03g15050.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	Medtr5g032160.1	Phosphoenolpyruvate carboxykinase (ATP); 	GO:0044283|small molecule biosynthetic process||GO:0006094|gluconeogenesis||GO:0044281|small molecule metabolic process	GO:0004612|phosphoenolpyruvate carboxykinase (ATP) activity||GO:0005524|ATP binding	NA
PtpAffx.135244.1.S1_at	A	A1TS	POPTR_0019s01800	POPTR_0019s01800 (11)	scaffold_19:1553931-1554297(-) (11)	NA	NA	NA	AT5G09840.1	Putative endonuclease or glycosyl hydrolase 	LOC_Os12g06560.1	expressed protein	Medtr3g144270.1	Protein of unknown function DUF537 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135263.1.S1_s_at	A	A1TS	POPTR_0010s15250	POPTR_0010s15250 (11)	scaffold_10:14573712-14573773(+) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.135268.1.S1_s_at	A	A1TS	POPTR_0018s07050	POPTR_0018s07050 (11)	scaffold_18:7212766-7213080(-) (11)	NA	Q9LTR9	Glycylpeptide N-tetradecanoyltransferase 1	AT5G57020.1	myristoyl-CoA:protein N-myristoyltransferase 	LOC_Os01g51170.1	"glycylpeptide N-tetradecanoyltransferase 1, putative, expressed"	Medtr2g046620.1	Myristoyl-CoA:protein N-myristoyltransferase 	GO:0006499|N-terminal protein myristoylation	GO:0004379|glycylpeptide N-tetradecanoyltransferase activity	NA
PtpAffx.135278.1.S1_s_at	A	A1TS	POPTR_0015s04580	POPTR_0015s04580 (11)	scaffold_15:4790051-4791345(-) (11)	POPTR_0012s04440 (7)	Q5X4H5	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT3G17970.1	translocon at the outer membrane of chloroplasts 64-III 	LOC_Os03g50010.1	"toc64, putative, expressed"	Medtr4g154900.1	Amidase; 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.135280.1.S1_at	A	A1TS	POPTR_0011s11830	POPTR_0011s11830 (9)	scaffold_11:14625674-14626496(-) (11)	NA	NA	NA	AT1G64980.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os07g23120.1	expressed protein	Medtr5g007200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135298.1.A1_at	A	A1MS	POPTR_0001s45660	POPTR_0001s45660 (9)	scaffold_1:46230010-46230563(-) (11)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135307.1.S1_s_at	A	A1TS	POPTR_0006s04290	POPTR_0006s04290 (11)	scaffold_6:2933526-2933843(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135334.1.S1_at	A	A1TS	POPTR_0011s12520	POPTR_0011s12520 (11)	scaffold_11:15260035-15260468(-) (11)	NA	NA	NA	AT5G54400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.135334.2.S1_a_at	A	A2TS	POPTR_0001s41590	POPTR_0011s12520 (11)//POPTR_0001s41590 (11)	scaffold_1:41287630-41287752(-) (11)//scaffold_11:15260993-15261115(-) (11)	NA	NA	NA	AT5G54400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.135334.2.S1_at	A	A1MS	POPTR_0001s41590	POPTR_0001s41590 (11)	scaffold_1:41287555-41288058(-) (11)	NA	NA	NA	AT5G54400.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	NA	NA	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.135336.1.S1_at	A	A1TS	POPTR_0016s03360	POPTR_0016s03360 (9)	scaffold_16:1740518-1740919(-) (9)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135336.2.S1_a_at	A	A1TS	POPTR_0016s03360	POPTR_0016s03360 (10)	scaffold_16:1740761-1740948(-) (10)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135336.2.S1_at	A	A1TS	POPTR_0016s03360	POPTR_0016s03360 (10)	scaffold_16:1740786-1742153(-) (10)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135342.1.S1_at	A	A1TS	POPTR_0006s05330	POPTR_0006s05330 (11)	scaffold_6:3759678-3762762(-) (11)	NA	Q60560	DNA-binding protein SMUBP-2	AT2G03270.1	"DNA-binding protein, putative "	LOC_Os03g38990.1	"DNA-binding protein, putative, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135343.1.S1_at	A	A1TS	POPTR_0010s18710	POPTR_0010s18710 (11)	scaffold_10:16880713-16883738(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G65450.1	HXXXD-type acyl-transferase family protein 	LOC_Os11g31090.1	"transferase family protein, putative, expressed"	Medtr7g099800.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.135344.1.S1_at	A	A1TS	POPTR_0012s09800	POPTR_0012s09800 (11)	scaffold_12:10724457-10725359(-) (11)	NA	Q14746	Conserved oligomeric Golgi complex subunit 2	AT4G24840.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g63250.1	"brefeldin A-sensitive Golgi protein-like, putative, expressed"	Medtr8g109320.1	"COG complex component, COG2 "	GO:0007030|Golgi organization||GO:0015031|protein transport	NA	GO:0016020|membrane
PtpAffx.135358.1.S1_s_at	A	A1TS	POPTR_0001s11780	POPTR_0001s11780 (11)	scaffold_1:9141196-9141557(+) (11)	NA	Q8VY90	Ethylene-responsive transcription factor ERF105	AT5G51190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.135361.1.S1_s_at	A	A1TS	POPTR_0008s07790	POPTR_0008s07790 (11)	scaffold_8:4783806-4784794(-) (11)	NA	Q9FQ19	Sister chromatid cohesion 1 protein 3	AT5G16270.1	sister chromatid cohesion 1 protein 4 	LOC_Os01g67250.2	"Rad21 / Rec8 like protein, putative, expressed"	Medtr7g090210.1	"Rad21/Rec8 like protein, C-terminal; Rad21/Rec8 like protein, N-terminal "	NA	NA	GO:0000228|nuclear chromosome
PtpAffx.135374.1.S1_at	A	A1TS	POPTR_0001s36650	POPTR_0001s36650 (11)	scaffold_1:35331342-35332263(+) (11)	NA	Q9FLP0	65-kDa microtubule-associated protein 1	AT5G55230.1	microtubule-associated proteins 65-1 	LOC_Os06g20370.1	"microtubule associated protein, putative, expressed"	Medtr5g101260.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135376.1.S1_at	A	A1TS	POPTR_0001s06210	POPTR_0001s06210 (11)	scaffold_1:4797252-4797373(-) (11)	NA	Q9SE45	Annexin D3	AT2G38760.1	annexin 3 	LOC_Os05g31760.1	"annexin, putative, expressed"	Medtr8g039910.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.135376.1.S1_s_at	A	A1TS	POPTR_0001s06210	POPTR_0001s06210 (11)	scaffold_1:4795616-4797238(-) (11)	NA	Q9SE45	Annexin D3	AT2G38760.1	annexin 3 	LOC_Os05g31760.1	"annexin, putative, expressed"	Medtr8g039910.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.13538.1.A1_at	A	A1TS	POPTR_0010s17200	POPTR_0010s17200 (10)	scaffold_10:15898385-15898723(+) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G14020.1	O-fucosyltransferase family protein 	LOC_Os01g07410.1	"growth regulator related protein, putative, expressed"	Medtr5g045270.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135397.1.S1_at	A	A1TS	POPTR_0001s13390	POPTR_0001s13390 (11)	scaffold_1:10478692-10479471(-) (11)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.135403.1.S1_s_at	A	A1TS	POPTR_0004s16120	POPTR_0004s16120 (11)	scaffold_4:16559329-16559376(-) (11)	NA	Q9M069	"Glucan endo-1,3-beta-glucosidase 7"	AT4G34480.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os03g46660.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr3g159470.2	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.135416.1.S1_s_at	A	A1TS	POPTR_0008s12930	POPTR_0008s12930 (11)	scaffold_8:8424885-8425350(-) (11)	NA	Q39221	SEC12-like protein 2	AT2G01470.1	SEC12P-like 2 protein 	LOC_Os11g39650.1	"WD domain, G-beta repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135442.1.S1_at	A	A1TS	POPTR_0007s04220	POPTR_0007s04220 (11)	scaffold_7:2545204-2545738(-) (11)	NA	Q9FXA4	U-box domain-containing protein 26	AT1G49780.1	plant U-box 26 	LOC_Os04g35680.1	"U-box domain containing protein, expressed"	Medtr3g143260.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.13547.1.S1_s_at	A	A1TS	POPTR_0018s06510	POPTR_0018s06510 (11)	scaffold_18:6415346-6417430(-) (11)	NA	Q38998	Potassium channel AKT1	AT2G26650.1	K+ transporter 1 	LOC_Os01g45990.1	"potassium channel AKT1, putative, expressed"	Medtr8g119290.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.135486.1.S1_s_at	A	A1TS	POPTR_0393s00210	POPTR_0393s00210 (11)	scaffold_393:4359-12724(+) (11)	POPTR_0003s18610 (6)	Q83A83	Cystathionine beta-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.13550.1.S1_at	A	A1MA	POPTR_0012s04430	POPTR_0012s04430 (11)	scaffold_12:3646428-3646935(-) (11)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135514.1.S1_at	A	A1TS	POPTR_0015s03470	POPTR_0015s03470 (10)	scaffold_15:3026123-3029558(+) (10)	NA	P0C895	LRR repeats and ubiquitin-like domain-containing protein At2g30105	AT5G07910.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g11360.2	"leucine rich repeat containing protein, expressed"	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.135582.1.A1_at	A	A1TS	POPTR_0002s00380	POPTR_0002s00380 (11)	scaffold_2:100990-101281(-) (11)	NA	Q6DFB8	Tetratricopeptide repeat protein 37	AT1G76630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g40050.1	"tetratricopeptide repeat domain containing protein, expressed"	AC151525_24.1	Tetratricopeptide-like helical AC151525.18 129753-118532 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135584.1.S1_at	A	A1TS	POPTR_0002s06080	POPTR_0002s06080 (11)	scaffold_2:4072482-4073247(+) (11)	NA	Q9SJG9	Mitogen-activated protein kinase 20	AT2G42880.1	MAP kinase 20 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr3g119710.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.135595.1.S1_at	A	A1TS	POPTR_0005s11830	POPTR_0005s11830 (11)	scaffold_5:8605037-8605349(+) (11)	NA	P93031	"GDP-mannose 4,6 dehydratase 2"	AT3G51160.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g04620.1	"GDP-mannose 4,6 dehydratase 2, putative, expressed"	Medtr5g021700.1	"NAD-dependent epimerase/dehydratase; Short-chain dehydrogenase/reductase SDR; GDP-mannose 4,6-dehydratase "	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.1356.2.A1_a_at	A	A1TS	POPTR_0001s38470	POPTR_0001s38470 (11)	scaffold_1:37598500-37598724(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1356.4.A1_at	A	A1TA	POPTR_0001s38470	POPTR_0001s38470 (11)	scaffold_1:37598544-37598790(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135645.1.S1_at	A	A1TS	POPTR_0009s06140	POPTR_0009s06140 (10)	scaffold_9:6016347-6017139(+) (11)	NA	Q9SV01	F-box/WD-40 repeat-containing protein At3g52030	AT3G52030.2	F-box family protein with WD40/YVTN repeat doamin 	LOC_Os11g07970.1	"OsFBW2 - F-box domain and WD40 repeat containing protein, expressed"	Medtr3g040900.1	Cyclin-like F-box; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135648.1.S1_s_at	A	A1TS	POPTR_0005s21230	POPTR_0005s21230 (11)	scaffold_5:20345513-20345740(-) (11)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT5G42140.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os04g58960.1	"regulator of chromosome condensation, putative, expressed"	Medtr1g125660.1	"Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135649.1.S1_s_at	A	A1TS	POPTR_0019s07530	POPTR_0019s07530 (11)	scaffold_19:8560521-8561865(-) (11)	NA	Q7X996	CBL-interacting protein kinase 2	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.135655.1.S1_at	A	A1TS	POPTR_0016s02130	POPTR_0016s02130 (11)	scaffold_16:1025996-1027327(+) (11)	NA	NA	NA	AT3G22270.1	Topoisomerase II-associated protein PAT1 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135663.1.S1_s_at	A	A1TS	POPTR_0010s16250	POPTR_0010s16250 (11)	scaffold_10:15229808-15230055(-) (11)	NA	NA	NA	AT3G17340.1	ARM repeat superfamily protein 	LOC_Os11g47320.1	"protein transporter, putative, expressed"	Medtr8g134520.1	"protein transporter, related "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.135670.1.S1_at	A	A1TS	POPTR_0015s08160	POPTR_0015s08160 (10)	scaffold_15:9428970-9429793(+) (10)	NA	Q96AV8	Transcription factor E2F7	AT3G48160.2	DP-E2F-like 1 	LOC_Os02g50630.1	"E2F family transcription factor protein, putative, expressed"	Medtr8g124980.2	Winged helix repressor DNA-binding 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
PtpAffx.135671.1.S1_at	A	A1TS	POPTR_0005s25605	POPTR_0005s25605 (10)	scaffold_5:23839668-23841845(-) (10)	NA	P53849	Zinc finger protein GIS2	AT1G75560.2	zinc knuckle (CCHC-type) family protein 	LOC_Os10g39820.1	"zinc knuckle domain containing protein, expressed"	Medtr3g162990.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.135675.1.S1_at	A	A1TS	POPTR_0009s13930	POPTR_0009s13930 (11)	scaffold_9:11001946-11004784(-) (11)	NA	O88060	Translation initiation factor IF-3	AT1G34360.1	translation initiation factor 3 (IF-3) family protein 	LOC_Os02g01110.1	"translation initiation factor IF-3, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.135680.1.S1_at	A	A1TS	POPTR_0001s17520	POPTR_0001s17520 (11)	scaffold_1:14308593-14308640(+) (11)	NA	O24381	Plastidic ATP/ADP-transporter	AT1G80300.1	nucleotide transporter 1 	LOC_Os02g11740.1	"plastidic ATP/ADP-transporter, putative, expressed"	Medtr2g123610.1	ADP/ATP carrier protein 	GO:0006810|transport	GO:0005524|ATP binding||GO:0005471|ATP:ADP antiporter activity	GO:0016021|integral to membrane
PtpAffx.135680.1.S1_s_at	A	A2TS	POPTR_0003s05760	POPTR_0003s05760 (11)//POPTR_0001s17520 (10)	scaffold_1:14308342-14308740(+) (10)//scaffold_3:7134528-7135083(-) (11)	NA	O24381	Plastidic ATP/ADP-transporter	AT1G80300.1	nucleotide transporter 1 	LOC_Os02g11740.1	"plastidic ATP/ADP-transporter, putative, expressed"	Medtr2g123610.1	ADP/ATP carrier protein 	GO:0006810|transport	GO:0005524|ATP binding||GO:0005471|ATP:ADP antiporter activity	GO:0016021|integral to membrane
PtpAffx.135681.1.S1_s_at	A	A1TS	POPTR_0011s13610	POPTR_0011s13610 (11)	scaffold_11:16316401-16317356(-) (11)	NA	Q9H6U6	Breast carcinoma-amplified sequence 3	AT5G54730.1	homolog of yeast autophagy 18 (ATG18) F 	LOC_Os01g57720.2	expressed protein	Medtr2g096860.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135684.1.S1_at	A	A1TS	POPTR_0010s12550	POPTR_0010s12550 (10)	scaffold_10:12557451-12557884(+) (10)	NA	O14197	Uncharacterized transporter C5D6.04	AT1G71090.1	Auxin efflux carrier family protein 	LOC_Os08g09190.1	"auxin efflux carrier component, putative, expressed"	Medtr5g068420.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
PtpAffx.135693.1.S1_s_at	A	A1TS	POPTR_0015s12490	POPTR_0015s12490 (11)	scaffold_15:12718702-12718830(-) (11)	NA	Q6PGS5	Transmembrane protein 56-B	AT1G31300.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os03g46410.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.1357.1.S1_at	A	A1TS	POPTR_0009s09170	POPTR_0009s09170 (11)	scaffold_9:8195991-8196555(+) (11)	NA	NA	NA	AT3G19650.1	cyclin-related 	LOC_Os03g10590.1	"splicing factor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135709.1.S1_s_at	A	A1TS	POPTR_0010s08390	POPTR_0010s08390 (11)	scaffold_10:9324042-9324225(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.13574.1.S1_at	A	A1TS	POPTR_0019s05620	POPTR_0019s05620 (11)	scaffold_19:5987638-5989080(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT1G58030.1	cationic amino acid transporter 2 	LOC_Os12g42850.1	"amino acid permease, putative, expressed"	Medtr7g103380.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.135757.1.S1_at	A	A1TS	POPTR_0008s19180	POPTR_0008s19180 (11)	scaffold_8:13144121-13144900(+) (11)	NA	Q9BXS5	AP-1 complex subunit mu-1	AT1G60780.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os01g50770.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g034870.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.135763.1.S1_s_at	A	A1TS	POPTR_0010s19240	POPTR_0010s19240 (11)	scaffold_10:17214117-17214820(+) (11)	NA	Q9SIZ3	Probable methyltransferase PMT23	AT2G40280.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g61250.1	"methyltransferase, putative, expressed"	Medtr5g090650.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.135781.1.S1_s_at	A	A1TS	POPTR_0015s10890	POPTR_0015s10890 (11)	scaffold_15:11656491-11656842(-) (11)	NA	NA	NA	AT4G24910.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g103910.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135786.1.S1_s_at	A	A1TS	POPTR_0018s09020	POPTR_0018s09020 (11)	scaffold_18:9896746-9896963(-) (11)	NA	O82480	Rac-like GTP-binding protein ARAC7	AT4G28950.1	RHO-related protein from plants 9 	LOC_Os05g43820.3	"ras-related protein, putative, expressed"	Medtr6g099230.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.135805.1.A1_at	A	A1TS	POPTR_0015s06580	POPTR_0015s06580 (11)	scaffold_15:7524788-7526188(+) (11)	NA	NA	NA	AT1G26190.1	Phosphoribulokinase / Uridine kinase family 	LOC_Os02g47860.2	"uridine kinase, putative, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135849.1.S1_at	A	A1TS	POPTR_0009s05770	POPTR_0009s05770 (9)	scaffold_9:5785682-5786112(-) (9)	NA	NA	NA	AT3G20898.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr3g080740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135854.1.S1_at	A	A1TS	POPTR_0006s05180	POPTR_0006s05180 (11)	scaffold_6:3625514-3626007(-) (11)	NA	P93788	Remorin	AT3G57540.1	Remorin family protein 	LOC_Os07g38170.1	"remorin, putative, expressed"	Medtr7g110620.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135854.2.S1_at	A	A1TS	POPTR_0016s05470	POPTR_0016s05470 (9)	scaffold_16:3397121-3398187(+) (9)	NA	P93788	Remorin	AT2G41870.1	Remorin family protein 	LOC_Os07g38170.1	"remorin, putative, expressed"	Medtr7g110620.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135867.1.A1_at	A	A1TS	POPTR_0001s16120	POPTR_0001s16120 (10)	scaffold_1:12945514-12946120(+) (10)	NA	Q9UUH0	Uncharacterized protein C630.12	AT1G53710.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os03g27950.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g027100.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.135878.1.A1_s_at	A	A1TS	POPTR_0001s37570	POPTR_0001s37570 (11)	scaffold_1:36547383-36548252(+) (11)	NA	P87131	Cysteine synthase 2	AT1G55880.1	Pyridoxal-5'-phosphate-dependent enzyme family protein 	LOC_Os03g11660.1	"cysteine synthase, putative, expressed"	Medtr5g103260.1	Cystathionine beta-synthase 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.135882.1.A1_at	A	A1TS	POPTR_0001s38730	POPTR_0001s38730 (10)	scaffold_1:37896288-37896798(-) (10)	NA	Q759M1	Protein SIP5	AT1G78420.2	RING/U-box superfamily protein 	LOC_Os02g14720.1	expressed protein	Medtr7g031940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135933.1.S1_at	A	A1TS	POPTR_0019s02230	POPTR_0019s02230 (10)	scaffold_19:2078410-2079014(-) (10)	NA	NA	NA	AT3G04590.2	AT hook motif DNA-binding family protein 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr1g093350.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135947.2.A1_s_at	A	A1MS	POPTR_0018s08280	POPTR_0018s08280 (11)	scaffold_18:9180499-9180727(-) (11)	NA	NA	NA	AT5G20885.1	RING/U-box superfamily protein 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135961.1.A1_at	A	A1TS	POPTR_0015s05430	POPTR_0015s05430 (11)	scaffold_15:5786999-5787370(+) (11)	NA	P92973	Protein CCA1	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135961.2.A1_at	A	A1TS	POPTR_0015s05430	POPTR_0015s05430 (11)	scaffold_15:5786845-5786955(+) (11)	NA	P92973	Protein CCA1	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.135961.2.A1_s_at	A	A1TS	POPTR_0015s05430	POPTR_0015s05430 (11)	scaffold_15:5786672-5786829(+) (11)	NA	P92973	Protein CCA1	AT1G18330.2	Homeodomain-like superfamily protein 	LOC_Os06g51260.1	"MYB family transcription factor, putative, expressed"	Medtr5g084860.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136012.1.A1_at	A	A1TS	POPTR_0010s19240	POPTR_0010s19240 (11)	scaffold_10:17216286-17216659(+) (11)	NA	Q9SIZ3	Probable methyltransferase PMT23	AT2G40280.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g61250.1	"methyltransferase, putative, expressed"	Medtr5g090650.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.136012.1.A1_s_at	A	A1TS	POPTR_0010s19240	POPTR_0010s19240 (11)	scaffold_10:17215899-17216266(+) (11)	NA	Q9SIZ3	Probable methyltransferase PMT23	AT2G40280.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g61250.1	"methyltransferase, putative, expressed"	Medtr5g090650.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.136052.1.A1_at	A	A1TS	POPTR_0001s19200	POPTR_0001s19200 (10)	scaffold_1:16666662-16670135(-) (10)	NA	P37572	DNA repair protein radA homolog	AT5G50340.1	ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases 	LOC_Os06g05820.1	"OsLonP2 - Putative Lon protease homologue, expressed"	Medtr2g121930.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136061.1.A1_at	A	A1TS	POPTR_0006s17810	POPTR_0006s17810 (11)	scaffold_6:15994853-15995348(+) (11)	NA	Q0JLP9	Probable protein phosphatase 2C 6	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr4g159800.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136075.1.A1_at	A	A1TS	POPTR_0002s02920	POPTR_0002s02920 (10)	scaffold_2:1796332-1796860(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136077.1.A1_s_at	A	A1TS	POPTR_0013s06770	POPTR_0013s06770 (11)	scaffold_13:5479571-5479986(-) (11)	POPTR_0019s06100 (8)	P26683	RNA polymerase sigma factor rpoD	AT1G08540.1	RNApolymerase sigma subunit 2 	LOC_Os11g26160.1	"RNA polymerase sigma factor, putative, expressed"	Medtr3g163870.1	"Winged helix repressor DNA-binding; RNA polymerase sigma factor RpoS, proteobacteria; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.136078.1.A1_at	A	A1TS	POPTR_0016s11410	POPTR_0016s11410 (9)	scaffold_16:10266037-10266762(+) (9)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13609.1.S1_at	A	A1TS	POPTR_0011s09340	POPTR_0011s09340 (11)	scaffold_11:11585540-11585992(-) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.136142.1.S1_at	A	A1TS	POPTR_0014s03860	POPTR_0014s03860 (11)	scaffold_14:3080189-3081470(-) (11)	NA	Q9SX85	Exocyst complex component SEC3A	AT1G47550.1	exocyst complex component sec3A 	LOC_Os03g42750.1	"roothairless 1, putative, expressed"	Medtr1g025760.1	"Strong similarity to F16N3.18 from, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136157.1.S1_at	A	A1TS	POPTR_0001s35930	POPTR_0001s35930 (11)	scaffold_1:34386788-34389163(-) (11)	NA	Q5KGJ3	Mitochondrial inner membrane protease ATP23	AT3G03420.1	Ku70-binding family protein 	LOC_Os12g19090.1	"metalloprotease ATP23, putative, expressed"	Medtr8g025200.1	"Mitochondrial inner membrane protease atp23, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136158.1.S1_at	A	A1TS	POPTR_0005s06640	POPTR_0005s06640 (9)	scaffold_5:4447879-4449196(+) (11)	NA	Q8L7V3	Probable methyltransferase PMT26	AT5G64030.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.136160.1.A1_a_at	A	A1TS	POPTR_0007s02610	POPTR_0007s02610 (11)	scaffold_7:1533086-1533542(-) (11)	NA	Q58760	Uncharacterized protein MJ1365	AT1G05270.1	TraB family protein 	LOC_Os05g42010.1	"TraB family protein, putative, expressed"	Medtr6g059350.1	TraB determinant 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136174.1.S1_at	A	A1TS	POPTR_0008s00670	POPTR_0008s00670 (11)	scaffold_8:309843-309991(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136179.1.A1_at	A	A1TS	POPTR_0005s24810	POPTR_0005s24810 (11)	scaffold_5:23245419-23246240(+) (11)	NA	Q681Q7	Uncharacterized protein At1g03900	AT1G03900.1	non-intrinsic ABC protein 4 	LOC_Os10g33630.2	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
PtpAffx.136213.1.S1_s_at	A	A1TS	POPTR_0010s21500	POPTR_0010s21500 (11)	scaffold_10:18755124-18755741(+) (11)	NA	NA	NA	AT3G12590.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os01g74310.1	expressed protein	Medtr7g025550.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13627.3.A1_a_at	A	A1TS	POPTR_0006s04380	POPTR_0006s04380 (9)	scaffold_6:2974414-2975588(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136305.1.S1_at	A	A1TS	POPTR_0004s03680	POPTR_0004s03680 (10)	scaffold_4:2549991-2550801(-) (10)	NA	Q9M5P2	Secretory carrier-associated membrane protein 3	AT1G61250.1	secretory carrier 3 	LOC_Os01g57220.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
PtpAffx.136323.1.S1_at	A	A1TS	POPTR_0014s03980	POPTR_0014s03980 (11)	scaffold_14:3165630-3165908(-) (11)	NA	Q9LN68	Probable galacturonosyltransferase-like 1	AT1G19300.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.136350.1.S1_at	A	A1TS	POPTR_0007s01340	POPTR_0007s01340 (11)	scaffold_7:750782-751208(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT1G28440.1	HAESA-like 1 	LOC_Os01g13800.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr2g018130.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.136353.1.S1_s_at	A	A1TS	POPTR_0002s15590	POPTR_0002s15590 (11)	scaffold_2:11632169-11632440(+) (11)	NA	P45432	COP9 signalosome complex subunit 1	AT3G61140.1	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os03g02540.1	"proteasome subunit, putative, expressed"	Medtr7g083770.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136353.2.S1_s_at	A	A1TS	POPTR_0014s07160	POPTR_0014s07160 (11)	scaffold_14:5417370-5418459(-) (11)	NA	P45432	COP9 signalosome complex subunit 1	AT3G61140.1	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os03g02540.1	"proteasome subunit, putative, expressed"	Medtr7g083770.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136359.1.A1_at	A	A2TS	POPTR_0004s05350	POPTR_0004s05350 (11)//POPTR_0686s00200 (9)	scaffold_4:4086247-4087079(+) (11)//scaffold_686:416-937(+) (9)	NA	Q8RXT9	GDSL esterase/lipase At1g28590	AT1G28590.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g11710.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr2g019010.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.136361.1.S1_s_at	A	A1TS	POPTR_0004s24510	POPTR_0004s24510 (11)	scaffold_4:23184273-23185159(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT4G19185.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os02g47500.1	"nodulin, putative, expressed"	Medtr8g086840.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.136364.1.A1_s_at	A	A1TS	POPTR_0014s15270	POPTR_0014s15270 (11)	scaffold_14:11338110-11339325(+) (11)	NA	P79051	ATP-dependent helicase rhp16	AT1G05120.1	Helicase protein with RING/U-box domain 	LOC_Os07g32730.1	"DNA repair protein rhp16, putative, expressed"	Medtr4g064720.1	"SNF2-related; Helicase, C-terminal; Zinc finger, RING-type; ; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.136368.1.S1_at	A	A1TS	POPTR_0004s23180	POPTR_0004s23180 (11)	scaffold_4:21960055-21960214(-) (11)	NA	Q40863	Embryogenesis-associated protein EMB8	AT5G49950.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g35730.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g122270.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136368.1.S1_s_at	A	A1TS	POPTR_0004s23180	POPTR_0004s23180 (9)	scaffold_4:21960225-21960421(-) (11)	NA	Q40863	Embryogenesis-associated protein EMB8	AT5G49950.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g35730.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr1g122270.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13638.1.S1_a_at	A	A2TS	POPTR_0008s16560	POPTR_0010s08360 (11)//POPTR_0008s16560 (11)	scaffold_10:9304799-9305563(+) (11)//scaffold_8:11116777-11117801(-) (11)	NA	Q8L467	Transcription factor bHLH104	AT4G14410.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02480.3	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr1g042530.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.13638.1.S1_at	A	A1TS	POPTR_0010s08360	POPTR_0010s08360 (11)	scaffold_10:9305341-9305725(+) (11)	NA	Q8L467	Transcription factor bHLH104	AT4G14410.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02480.3	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr1g042530.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.13638.2.S1_at	A	A1TS	POPTR_0008s16560	POPTR_0008s16560 (11)	scaffold_8:11116534-11117815(-) (11)	NA	Q8L467	Transcription factor bHLH104	AT4G14410.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os02g02480.3	"basic helix-loop-helix DND-binding domain containing protein, expressed"	Medtr1g042530.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.136381.1.S1_at	A	A1TS	POPTR_0002s16340	POPTR_0002s16340 (9)	scaffold_2:12220646-12221104(-) (9)	NA	Q9SUS5	E3 ubiquitin-protein ligase RHA1B	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136381.2.S1_s_at	A	A1TS	POPTR_0014s08360	POPTR_0014s08360 (10)	scaffold_14:6219605-6219808(-) (10)	NA	Q9SUS5	E3 ubiquitin-protein ligase RHA1B	AT3G61460.1	brassinosteroid-responsive RING-H2 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1364.1.A1_a_at	A	A1TS	POPTR_0007s01010	POPTR_0007s01010 (11)	scaffold_7:548257-548378(-) (11)	NA	P31691	"ADP,ATP carrier protein, mitochondrial"	AT4G28390.1	ADP/ATP carrier 3 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1364.3.A1_at	A	A1TS	POPTR_0007s01010	POPTR_0007s01010 (11)	scaffold_7:547330-547785(-) (11)	NA	P31691	"ADP,ATP carrier protein, mitochondrial"	AT4G28390.1	ADP/ATP carrier 3 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1364.4.S1_s_at	A	A1TS	POPTR_0007s01010	POPTR_0007s01010 (9)	scaffold_7:549435-549756(-) (9)	POPTR_0017s04450 (8)	P31691	"ADP,ATP carrier protein, mitochondrial"	AT4G28390.1	ADP/ATP carrier 3 	LOC_Os05g23720.1	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13640.1.A1_at	A	A1TS	POPTR_0006s12520	POPTR_0006s12520 (9)	scaffold_6:9660771-9661967(-) (9)	NA	NA	NA	AT5G03420.1	5'-AMP-activated protein kinase-related 	LOC_Os03g48170.1	"5-AMP-activated protein kinase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136402.1.S1_at	A	A1TS	POPTR_0010s10750	POPTR_0010s10750 (11)	scaffold_10:11186733-11188923(-) (11)	NA	NA	NA	AT3G02820.1	zinc knuckle (CCHC-type) family protein 	LOC_Os02g52460.1	"zinc knuckle domain containing protein, expressed"	Medtr4g100980.1	"Zinc finger, CCHC-type; Replication fork protection component Swi3 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0007049|cell cycle||GO:0048478|replication fork protection||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.13641.2.A1_a_at	A	A1TS	POPTR_0003s01080	POPTR_0003s01080 (11)	scaffold_3:948235-949037(-) (11)	NA	Q38732	"DAG protein, chloroplastic"	AT4G20020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast hits to 16023 proteins in 1033 species: Archae - 4; Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants - 3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI BLink). 	LOC_Os11g11020.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g006280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136410.1.S1_at	A	A1TS	POPTR_0010s19690	POPTR_0010s19690 (9)	scaffold_10:17534814-17536641(+) (9)	NA	NA	NA	AT2G40095.1	Alpha/beta hydrolase related protein 	LOC_Os01g45960.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g093490.1	"hydrolase, alpha/beta fold family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136423.1.S1_s_at	A	A1TS	POPTR_0004s06640	POPTR_0004s06640 (11)	scaffold_4:5325437-5325718(-) (11)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr3g137660.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
PtpAffx.136492.1.S1_s_at	A	A1TS	POPTR_0015s14080	POPTR_0015s14080 (11)	scaffold_15:13816399-13816510(-) (11)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT4G25390.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	Medtr8g150930.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.136498.1.S1_at	A	A1TS	POPTR_0001s18400	POPTR_0001s18400 (10)	scaffold_1:15467462-15468091(-) (10)	NA	Q66GQ3	Protein disulfide isomerase-like 1-6	AT3G16110.1	PDI-like 1-6 	LOC_Os06g06790.1	"OsPDIL1-5  protein disulfide isomerase PDIL1-5, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.136506.1.S1_at	A	A1TS	POPTR_0005s09860	POPTR_0005s09860 (10)	scaffold_5:6940319-6940763(-) (10)	NA	O04866	"Acetylornithine aminotransferase, mitochondrial"	AT1G80600.1	HOPW1-1-interacting 1 	LOC_Os05g03830.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.13651.1.A1_s_at	A	A1TS	POPTR_0002s13630	POPTR_0002s13630 (11)	scaffold_2:10097587-10097902(-) (11)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.136512.1.S1_at	A	A1TS	POPTR_0001s03320	POPTR_0001s03320 (10)	scaffold_1:2705119-2705598(-) (10)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G79720.1	Eukaryotic aspartyl protease family protein 	LOC_Os09g25570.1	"aspartic proteinase, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13652.1.S1_s_at	A	A1TS	POPTR_0015s14430	POPTR_0015s14430 (11)	scaffold_15:14039395-14039780(+) (11)	NA	Q9FHM7	Hypersensitive-induced response protein 4	AT5G51570.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os06g04460.1	"hypersensitive-induced response protein, putative, expressed"	Medtr6g069910.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13664.1.A1_at	A	A1TS	POPTR_0008s16750	POPTR_0008s16750 (11)	scaffold_8:11263140-11263658(+) (11)	POPTR_0010s08140 (7)	NA	NA	AT2G31160.1	Protein of unknown function (DUF640) 	LOC_Os02g07030.3	"DUF640 domain containing protein, putative, expressed"	Medtr1g043150.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13666.1.S1_at	A	A1TS	POPTR_0010s15230	POPTR_0010s15230 (11)	scaffold_10:14565839-14566393(+) (11)	NA	NA	NA	AT5G49400.1	zinc knuckle (CCHC-type) family protein 	LOC_Os11g09310.1	"zinc finger CCHC domain-containing protein 10, putative, expressed"	Medtr8g137800.1	"Zinc finger CCHC domain-containing protein 10, related "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.136671.1.A1_s_at	A	A1TS	POPTR_0013s02250	POPTR_0013s02250 (9)	scaffold_13:1341704-1344633(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr7g139200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1367.1.A1_at	A	A1MA	POPTR_0006s18770	POPTR_0006s18770 (11)	scaffold_6:17402976-17403373(+) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G57670.2	Protein kinase superfamily protein 	LOC_Os08g15060.1	"ATP binding protein, putative, expressed"	Medtr8g128150.1	Tyrosine protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0006950|response to stress	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13670.1.S1_at	A	A1TS	POPTR_0018s08800	POPTR_0018s08800 (11)	scaffold_18:9727315-9727764(+) (11)	NA	Q9LV48	Proline-rich receptor-like protein kinase PERK1	AT3G24550.1	proline extensin-like receptor kinase 1 	LOC_Os05g12680.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g093550.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13671.1.S1_at	A	A1TS	POPTR_0007s06480	POPTR_0007s06480 (9)	scaffold_7:4850964-4851505(+) (11)	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os08g07740.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr4g140740.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
PtpAffx.136723.1.S1_at	A	A1TS	POPTR_0004s01220	POPTR_0004s01220 (11)	scaffold_4:668770-668822(-) (11)	NA	P92980	"5'-adenylylsulfate reductase 3, chloroplastic"	AT4G21990.1	APS reductase 3 	LOC_Os07g32570.2	"OsAPRL1  adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed"	Medtr3g017000.1	hypothetical protein 	GO:0008152|metabolic process	GO:0016740|transferase activity	NA
PtpAffx.136723.1.S1_s_at	A	A1TS	POPTR_0004s01220	POPTR_0004s01220 (11)	scaffold_4:668324-668778(-) (11)	POPTR_0004s01190 (6)	P92980	"5'-adenylylsulfate reductase 3, chloroplastic"	AT4G21990.1	APS reductase 3 	LOC_Os07g32570.2	"OsAPRL1  adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed"	Medtr3g017000.1	hypothetical protein 	GO:0008152|metabolic process	GO:0016740|transferase activity	NA
PtpAffx.136738.1.S1_s_at	A	A1TS	POPTR_0002s08900	POPTR_0002s08900 (11)	scaffold_2:6285545-6285608(-) (11)	NA	P42732	"30S ribosomal protein S13, chloroplastic"	AT5G14320.1	Ribosomal protein S13/S18 family 	LOC_Os03g49710.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr3g098290.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
PtpAffx.13675.1.A1_at	A	A1TS	POPTR_0006s27150	POPTR_0006s27150 (9)	scaffold_6:25151204-25151473(+) (9)	NA	Q15B89	UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (Fragment)	AT4G32272.1	Nucleotide/sugar transporter family protein 	LOC_Os02g40030.1	"transporter family protein, putative, expressed"	Medtr1g014080.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.136766.1.S1_at	A	A1MS	POPTR_0016s04710	POPTR_0016s04710 (9)	scaffold_16:2711050-2712019(-) (9)//scaffold_16:2810202-2811182(-) (10)	POPTR_0016s04610 (6)	Q6BDR8	Non-structural maintenance of chromosome element 4	AT1G51130.1	"Nse4, component of Smc5/6 DNA repair complex "	LOC_Os02g10090.1	expressed protein	Medtr1g147250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136792.1.S1_at	A	A1TS	POPTR_0002s03730	POPTR_0002s03730 (11)	scaffold_2:2315218-2315568(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G28540.1	casein kinase I-like 6 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1368.1.A1_at	A	A1TS	POPTR_0008s18050	POPTR_0008s18050 (11)	scaffold_8:12104202-12104605(+) (11)	NA	Q8RW96	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform	AT3G26020.3	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os07g17360.2	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13681.1.S1_s_at	A	A1TS	POPTR_0014s16750	POPTR_0014s16750 (11)	scaffold_14:12832877-12833928(-) (11)	NA	Q9SJD4	Long chain acyl-CoA synthetase 8	AT2G04350.2	AMP-dependent synthetase and ligase family protein 	LOC_Os05g25310.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g106650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.136820.1.S1_a_at	A	A2TS	POPTR_0008s12780	POPTR_0008s12780 (11)//POPTR_0010s12390 (11)	scaffold_10:12429976-12430190(+) (11)//scaffold_8:8253621-8253835(-) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT1G71010.1	FORMS APLOID AND BINUCLEATE CELLS 1C 	LOC_Os08g33200.1	"1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.136820.2.S1_at	A	A1TS	POPTR_0010s12390	POPTR_0010s12390 (11)	scaffold_10:12430014-12430459(+) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT1G71010.1	FORMS APLOID AND BINUCLEATE CELLS 1C 	LOC_Os06g14750.1	"phosphatidylinositol-4-phosphate 5-Kinase family protein, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.13683.2.A1_a_at	A	A1TS	POPTR_0012s09360	POPTR_0012s09360 (11)	scaffold_12:10407749-10408064(+) (11)	NA	Q9M8Y0	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC	AT5G63200.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g67920.1	"tetratricopeptide repeat domain containing protein, expressed"	AC235753_16.1	Tetratricopeptide-like helical; AC235753.1 94332-88707 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136832.1.S1_at	A	A1TS	POPTR_0005s01720	POPTR_0005s01720 (9)	scaffold_5:1148249-1148831(+) (9)	NA	Q9FP29	Homeobox protein knotted-1-like 1	AT1G23380.1	KNOTTED1-like homeobox gene 6 	LOC_Os01g19694.1	"Homeobox domain containing protein, expressed"	Medtr5g035050.1	ELK; KNOX1; KNOX2; Homeodomain-related 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.13687.1.S1_at	A	A1TS	POPTR_0010s19720	POPTR_0010s19720 (11)	scaffold_10:17559816-17560975(-) (11)	NA	O49595	High mobility group B protein 1	AT3G51880.2	high mobility group B1 	LOC_Os09g37910.3	"HMG1/2, putative, expressed"	Medtr3g025490.1	HMG1/2 (high mobility group) box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.13687.2.S1_a_at	A	A1TS	POPTR_0008s06730	POPTR_0008s06730 (11)	scaffold_8:4022818-4024031(+) (11)	NA	O49595	High mobility group B protein 1	AT3G51880.2	high mobility group B1 	LOC_Os09g37910.3	"HMG1/2, putative, expressed"	Medtr3g025490.1	HMG1/2 (high mobility group) box 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.13688.2.S1_a_at	A	A1TS	POPTR_0008s17670	POPTR_0008s17670 (11)	scaffold_8:11870081-11870517(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13691.1.A1_at	A	A1TS	POPTR_0011s17010	POPTR_0011s17010 (10)	scaffold_11:18679667-18680110(+) (10)	NA	Q9FF99	Probable amino acid permease 7	AT5G23810.1	amino acid permease 7 	LOC_Os04g39489.1	"amino acid transporter, putative, expressed"	CU013523_1.1	"Amino acid transporter, transmembrane CU013523.3 15682-12598 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136912.1.S1_s_at	A	A1TS	POPTR_0004s14080	POPTR_0004s14080 (11)	scaffold_4:14569490-14570715(-) (11)	NA	Q38772	Cell division control protein 2 homolog A	AT3G48750.1	cell division control 2 	LOC_Os03g02680.2	"cyclin-dependent kinase A-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13692.1.A1_at	A	A1TS	POPTR_0001s26170	POPTR_0001s26170 (11)	scaffold_1:25235499-25235606(-) (11)	NA	Q99J36	THUMP domain-containing protein 1	AT5G12410.1	THUMP domain-containing protein 	LOC_Os11g36060.1	"THUMP domain-containing protein, putative, expressed"	Medtr5g009030.1	THUMP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136933.1.S1_s_at	A	A1TS	POPTR_0003s13810	POPTR_0003s13810 (11)	scaffold_3:14084219-14085252(+) (11)	NA	A7YY75	Nucleoporin SEH1	AT1G64350.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g43250.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr6g076630.1	"seh1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13694.1.S1_at	A	A1TS	POPTR_0013s02160	POPTR_0013s02160 (11)	scaffold_13:1299514-1300498(+) (11)	NA	NA	NA	AT5G27560.1	Domain of unknown function (DUF1995) 	LOC_Os06g05390.1	expressed protein	Medtr1g099510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136947.1.S1_at	A	A1MS	POPTR_0011s12010	POPTR_0011s12010 (10)	scaffold_11:14792099-14792645(+) (10)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.2	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13695.1.S1_at	A	A1TS	POPTR_0001s18780	POPTR_0001s18780 (11)	scaffold_1:15916948-15918457(-) (11)	NA	Q5KAH3	Cytochrome c oxidase assembly protein COX19	AT1G66590.1	cytochrome c oxidase 19-1 	LOC_Os02g20940.2	"CHCH domain containing protein, expressed"	Medtr8g015260.1	CHCH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136953.1.S1_s_at	A	A1TS	POPTR_0002s02490	POPTR_0002s02490 (11)	scaffold_2:1405832-1407254(+) (11)	NA	Q54UB1	tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6	AT2G45730.1	eukaryotic initiation factor 3 gamma subunit family protein 	LOC_Os04g02150.2	"tRNA methyltransferase, putative, expressed"	Medtr1g030970.1	"Eukaryotic initiation factor 3, gamma subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
PtpAffx.136954.1.S1_at	A	A1TS	POPTR_0007s01590	POPTR_0007s01590 (11)	scaffold_7:901361-903762(+) (11)	NA	NA	NA	AT3G07565.1	Protein of unknown function (DUF3755) 	LOC_Os05g24000.2	expressed protein	Medtr3g025420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136959.1.S1_at	A	A2TS	POPTR_0010s06380	POPTR_0010s06380 (11)//POPTR_0010s06390 (11)	scaffold_10:7748584-7748633(+) (11)//scaffold_10:7781038-7781087(+) (11)	NA	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g70025.1	"transferase family protein, putative"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.136959.1.S1_s_at	A	A2TS	POPTR_0010s06380	POPTR_0010s06380 (11)//POPTR_0010s06390 (11)	scaffold_10:7748670-7748850(+) (11)//scaffold_10:7781124-7781304(+) (11)	NA	Q70PR7	Vinorine synthase	AT1G24430.1	HXXXD-type acyl-transferase family protein 	LOC_Os01g70025.1	"transferase family protein, putative"	Medtr3g103100.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.13697.1.S1_a_at	A	A2TS	POPTR_0014s12800	POPTR_0014s12800 (11)//POPTR_0020s00510 (11)	scaffold_14:9436858-9437176(+) (11)//scaffold_20:783324-783642(-) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT1G03010.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g22600.1	"BTBN6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr7g130000.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.13697.1.S1_at	A	A1TS	POPTR_0014s12800	POPTR_0014s12800 (11)	scaffold_14:9437065-9437295(+) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT1G03010.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g22600.1	"BTBN6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr7g130000.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.136973.1.S1_at	A	A1TS	POPTR_0019s14760	POPTR_0019s14760 (11)	scaffold_19:15433903-15434776(+) (11)	NA	NA	NA	AT1G06950.1	translocon at the inner envelope membrane of chloroplasts 110 	LOC_Os10g35010.1	"ATTIC110/TIC110, putative, expressed"	Medtr5g082650.1	"chloroplast inner envelope protein, 110 kD, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136977.2.S1_s_at	A	A2TS	POPTR_0006s16090	POPTR_0130s00220 (11)//POPTR_0006s16090 (11)	scaffold_130:40602-41409(+) (11)//scaffold_6:13978179-13978823(-) (11)	NA	Q9LK09	Syntaxin-32	AT3G24350.1	syntaxin of plants  32 	LOC_Os01g08400.1	"syntaxin, putative, expressed"	Medtr3g136000.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
PtpAffx.136990.1.S1_at	A	A1TS	POPTR_0003s04320	POPTR_0003s04320 (10)	scaffold_3:5031525-5032795(-) (10)	NA	Q5HWH7	5'-nucleotidase surE	AT1G72880.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os01g51280.1	"5-nucleotidase surE, putative, expressed"	Medtr2g120880.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.136997.1.S1_s_at	A	A1TS	POPTR_0009s01890	POPTR_0009s01890 (11)	scaffold_9:2364627-2365936(+) (11)	NA	NA	NA	AT5G60580.3	RING/U-box superfamily protein 	LOC_Os06g46366.1	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr4g081620.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.136998.1.S1_at	A	A1TS	POPTR_0007s14790	POPTR_0007s14790 (11)	scaffold_7:14530905-14531305(-) (11)	NA	NA	NA	AT3G49800.1	BSD domain-containing protein 	LOC_Os01g56100.1	"BSD domain containing protein, expressed"	Medtr5g015300.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1370.1.A1_s_at	A	A1TS	POPTR_0015s07550	POPTR_0015s07550 (11)	scaffold_15:8839706-8840013(+) (11)	NA	Q40255	Probable aldehyde dehydrogenase	AT5G62530.1	aldehyde dehydrogenase 12A1 	LOC_Os05g45960.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g112760.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137019.1.S1_s_at	A	A1TS	POPTR_0004s19350	POPTR_0004s19350 (11)	scaffold_4:19208301-19208749(-) (11)	NA	NA	NA	AT4G35240.2	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37520.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13702.1.S1_at	A	A1TS	POPTR_0004s07130	POPTR_0004s07130 (11)	scaffold_4:5901773-5902260(+) (11)	NA	NA	NA	AT5G52780.1	Protein of unknown function (DUF3464) 	LOC_Os10g38910.1	expressed protein	Medtr6g062120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137025.1.S1_at	A	A1TS	POPTR_0011s11100	POPTR_0011s11100 (11)	scaffold_11:13766891-13767260(+) (11)	NA	P81898	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A	AT3G14920.1	Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein 	LOC_Os01g10930.1	"peptide-N4-asparagine amidase A, putative, expressed"	Medtr1g028750.1	"Peptide-N4-asparagine amidase A, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13703.1.S1_s_at	A	A1TS	POPTR_0011s10590	POPTR_0011s10590 (11)	scaffold_11:13124374-13124627(+) (11)	NA	Q500Y9	NADH kinase	AT1G78590.1	NAD(H) kinase 3 	LOC_Os09g17680.1	"NAD kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137030.1.S1_s_at	A	A1TS	POPTR_0012s07080	POPTR_0012s07080 (11)	scaffold_12:7765788-7766406(+) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.137054.1.S1_at	A	A1TS	POPTR_0002s22430	POPTR_0002s22430 (11)	scaffold_2:19164083-19164119(+) (11)	NA	O22466	WD-40 repeat-containing protein MSI1	AT5G58230.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137054.1.S1_s_at	A	A1TS	POPTR_0002s22430	POPTR_0002s22430 (11)	scaffold_2:19164192-19165050(+) (11)	NA	O22466	WD-40 repeat-containing protein MSI1	AT5G58230.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137060.1.S1_at	A	A1TS	POPTR_0008s01930	POPTR_0008s01930 (11)	scaffold_8:920298-922361(-) (11)	NA	NA	NA	AT5G04840.1	bZIP protein 	LOC_Os02g33560.1	expressed protein	Medtr2g132450.1	Basic leucine zipper 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1371.1.A1_at	A	A1TS	POPTR_0006s10930	POPTR_0006s10930 (10)	scaffold_6:8291924-8292196(-) (10)	NA	P93026	Vacuolar-sorting receptor 1	AT3G52850.1	vacuolar sorting receptor homolog 1 	LOC_Os11g02464.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr8g005600.1	"EGF-like calcium-binding; Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13710.1.S1_at	A	A1TS	POPTR_0022s00840	POPTR_0022s00840 (10)	scaffold_22:442182-442372(+) (10)	NA	Q9C5E7	"Pumilio homolog 6, chloroplastic"	AT4G25880.1	pumilio 6 	LOC_Os08g40830.2	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.137119.1.S1_at	A	A1TS	POPTR_0007s01020	POPTR_0007s01020 (11)	scaffold_7:551590-552359(-) (11)	NA	P41695	Checkpoint serine/threonine-protein kinase BUB1	AT2G20635.1	ATP binding;protein kinases;protein serine/threonine kinases 	LOC_Os07g32480.1	"mitotic checkpoint serine/threonine-protein kinase BUB1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137124.1.S1_s_at	A	A1TS	POPTR_0015s11530	POPTR_0015s11530 (11)	scaffold_15:12100012-12101500(-) (11)	NA	Q11204	"CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2"	AT3G48820.1	Glycosyltransferase family 29 (sialyltransferase) family protein 	LOC_Os02g02620.1	"sialyltransferase family domain containing protein, expressed"	Medtr4g152010.1	"Glycosyl transferase, family 29 "	GO:0006486|protein amino acid glycosylation	GO:0008373|sialyltransferase activity	GO:0030173|integral to Golgi membrane
PtpAffx.137125.1.S1_at	A	A1TS	POPTR_0013s04790	POPTR_0013s04790 (11)	scaffold_13:3303747-3304362(+) (11)	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g022900.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.137131.1.S1_s_at	A	A1TS	POPTR_0006s04210	POPTR_0006s04210 (11)	scaffold_6:2878183-2879766(-) (11)	NA	Q84TJ0	Probable methyltransferase PMT6	AT3G10200.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os05g31480.2	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.137139.1.S1_at	A	A1TS	POPTR_0013s11770	POPTR_0013s11770 (11)	scaffold_13:12425401-12427095(-) (11)	NA	P46687	Gibberellin-regulated protein 3	AT2G18420.1	Gibberellin-regulated family protein 	LOC_Os05g35690.1	"GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr1g031010.1	Appr-1-p processing; Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137161.1.S1_at	A	A1TS	POPTR_0001s00330	POPTR_0001s00330 (11)	scaffold_1:198584-199437(-) (11)	NA	Q9C8U0	Flavin-containing monooxygenase FMO GS-OX-like 5	AT1G63370.1	Flavin-binding monooxygenase family protein 	LOC_Os10g40570.1	"flavin-containing monooxygenase family protein, putative, expressed"	Medtr5g012290.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137171.1.S1_at	A	A1TS	POPTR_0018s08210	POPTR_0018s08210 (9)	scaffold_18:9052800-9055190(+) (9)	NA	NA	NA	AT1G15215.2	BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g17770.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g070910.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137173.1.S1_s_at	A	A1TS	POPTR_0009s08120	POPTR_0009s08120 (11)	scaffold_9:7480773-7481712(+) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137176.1.S1_s_at	A	A1TS	POPTR_0018s00760	POPTR_0018s00760 (11)	scaffold_18:656435-657363(-) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.13718.1.S1_at	A	A1TS	POPTR_0014s02040	POPTR_0014s02040 (11)	scaffold_14:1788986-1790122(-) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G43100.1	Eukaryotic aspartyl protease family protein 	LOC_Os07g40260.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr5g016240.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137186.1.S1_at	A	A1TS	POPTR_0001s18640	POPTR_0001s18640 (11)	scaffold_1:15695400-15697189(-) (11)	NA	Q9M817	Probable peptide transporter At1g52190	AT1G52190.1	Major facilitator superfamily protein 	LOC_Os01g55610.1	"peptide transporter PTR2, putative, expressed"	Medtr2g122680.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.137248.1.S1_at	A	A1TS	POPTR_0008s20440	POPTR_0008s20440 (11)	scaffold_8:14192970-14194681(-) (11)	NA	Q944H2	"Protein ABCI12, chloroplastic"	AT3G21580.1	cobalt ion transmembrane transporters 	LOC_Os05g33230.1	"cobalt ion transporter, putative, expressed"	Medtr2g026300.1	Cobalt transport protein 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006824|cobalt ion transport||GO:0044283|small molecule biosynthetic process	GO:0015087|cobalt ion transmembrane transporter activity	NA
PtpAffx.137256.1.S1_s_at	A	A1TS	POPTR_0006s26520	POPTR_0006s26520 (11)	scaffold_6:24720668-24723423(+) (11)	NA	Q8GY84	DEAD-box ATP-dependent RNA helicase 10	AT5G60990.1	DEA(D/H)-box RNA helicase family protein 	LOC_Os03g46610.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC146793_9.1	"Helicase, C-terminal; ; AC146793.7 47553-38999 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.137277.1.S1_s_at	A	A1TS	POPTR_0006s21980	POPTR_0006s21980 (11)	scaffold_6:20998152-20999735(+) (11)	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137280.1.S1_a_at	A	A1TS	POPTR_0003s04140	POPTR_0003s04140 (11)	scaffold_3:4804933-4806040(-) (11)	NA	Q8RWN9	"Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial"	AT3G13930.1	"Dihydrolipoamide acetyltransferase, long form protein "	LOC_Os06g01630.5	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.137280.2.S1_a_at	A	A1TS	POPTR_0003s04140	POPTR_0003s04140 (11)	scaffold_3:4805043-4806040(-) (11)	NA	Q8RWN9	"Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial"	AT3G13930.1	"Dihydrolipoamide acetyltransferase, long form protein "	LOC_Os06g01630.5	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.137281.1.S1_at	A	A1TS	POPTR_0005s12560	POPTR_0005s12560 (11)	scaffold_5:9339916-9340405(-) (11)	NA	NA	NA	AT2G18460.1	like COV 3 	LOC_Os05g45280.1	"protein of unknown function DUF502 domain containing protein, expressed"	Medtr4g158960.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13732.1.S1_s_at	A	A1TS	POPTR_0010s25090	POPTR_0010s25090 (11)	scaffold_10:20944606-20945468(-) (11)	NA	Q06850	Calcium-dependent protein kinase 1	AT5G04870.1	calcium dependent protein kinase 1 	LOC_Os03g57450.1	"CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr1g060320.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.137321.1.S1_s_at	A	A1TS	POPTR_0001s05620	POPTR_0001s05620 (11)	scaffold_1:4338207-4341115(+) (11)	NA	Q940Q3	Zinc transporter ZTP29	AT3G20870.1	ZIP metal ion transporter family 	LOC_Os02g10230.1	"metal cation transporter, putative, expressed"	Medtr4g087400.1	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.13733.1.A1_at	A	A1TS	POPTR_0008s04800	POPTR_0008s04800 (9)	scaffold_8:2788707-2788955(+) (9)	NA	NA	NA	AT5G13560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). 	LOC_Os05g06980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137376.1.A1_at	A	A1MA	POPTR_0010s24730	POPTR_0010s24730 (11)	scaffold_10:20774093-20774544(-) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT5G04770.1	cationic amino acid transporter 6 	LOC_Os11g05690.2	"amino acid permease family protein, putative, expressed"	AC233577_6.1	Amino acid permease-associated region AC233577.5 33201-36915 E EGN_Mt090430 200	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.13738.2.S1_a_at	A	A1TS	POPTR_0007s11640	POPTR_0007s11640 (11)	scaffold_7:12025306-12027428(+) (11)	NA	O13978	Meiotically up-regulated gene 66 protein	AT5G66930.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1649 (InterPro:IPR012445); Has 251 Blast hits to 251 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 91; Fungi - 85; Plants - 58; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). 	LOC_Os12g26044.3	expressed protein	Medtr6g086730.1	Protein of unknown function DUF1649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137388.1.S1_at	A	A2TS	POPTR_0009s13080	POPTR_0009s13080 (9)//POPTR_0009s13100 (9)	scaffold_9:10506623-10507159(-) (9)//scaffold_9:10522671-10523204(-) (9)	NA	Q7XSQ9	Probable aquaporin PIP1-2	AT2G16850.1	plasma membrane intrinsic protein 2;8 	LOC_Os04g47220.1	"aquaporin protein, putative, expressed"	Medtr5g010260.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.13741.1.A1_at	A	A1TS	POPTR_0002s24700	POPTR_0002s24700 (11)	scaffold_2:21985807-21986186(-) (11)	NA	Q42712	"Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment)"	AT3G25110.1	fatA acyl-ACP thioesterase 	LOC_Os09g32760.1	"acyl-ACP thioesterase, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13741.2.S1_s_at	A	A1TS	POPTR_0009s08330	POPTR_0009s08330 (11)	scaffold_9:7657294-7657682(+) (11)	NA	B5FZA8	LYR motif-containing protein 4	AT5G61220.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os08g14070.1	"LYR motif containing protein, putative, expressed"	Medtr7g012110.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137414.1.S1_s_at	A	A1TS	POPTR_0017s12960	POPTR_0017s12960 (11)	scaffold_17:13122690-13124157(-) (11)	NA	Q8L9Y0	Serine carboxypeptidase-like 25	AT3G02110.1	serine carboxypeptidase-like 25 	LOC_Os02g55130.4	"OsSCP10 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g121500.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.137415.1.S1_at	A	A1TS	POPTR_0002s10250	POPTR_0002s10250 (10)	scaffold_2:7356120-7356756(-) (10)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT5G65380.1	MATE efflux family protein 	LOC_Os03g08900.1	"MATE efflux family protein, putative, expressed"	Medtr3g150100.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.137439.1.S1_s_at	A	A1TS	POPTR_0013s07530	POPTR_0013s07530 (11)	scaffold_13:6333433-6334257(+) (11)	NA	Q0WQG8	GPCR-type G protein 2	AT4G27630.2	GPCR-type G protein 2 	LOC_Os04g51180.1	"GPR89A, putative, expressed"	Medtr5g005620.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13744.1.S1_a_at	A	A2TS	POPTR_0001s47380	POPTR_0011s16970 (10)//POPTR_0001s47380 (10)	scaffold_1:47606502-47606868(+) (10)//scaffold_11:18663942-18664358(+) (10)	NA	Q39254	Vacuolar cation/proton exchanger 2	AT3G13320.1	cation exchanger 2 	LOC_Os03g27960.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g107060.1	Calcium/proton exchanger superfamily 	NA	NA	GO:0016021|integral to membrane
PtpAffx.13744.1.S1_at	A	A1TS	POPTR_0001s47380	POPTR_0001s47380 (9)	scaffold_1:47606472-47607252(+) (9)	NA	Q39254	Vacuolar cation/proton exchanger 2	AT3G13320.1	cation exchanger 2 	LOC_Os03g27960.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g107060.1	Calcium/proton exchanger superfamily 	NA	NA	GO:0016021|integral to membrane
PtpAffx.137445.1.S1_at	A	A1TS	POPTR_0014s09740	POPTR_0014s09740 (11)	scaffold_14:7264419-7264723(+) (11)	NA	Q42883	"Calcium-transporting ATPase, endoplasmic reticulum-type"	AT4G00900.1	ER-type Ca2+-ATPase 2 	LOC_Os03g17310.1	"calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed"	Medtr8g029470.1	Haloacid dehalogenase-like hydrolase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.137455.1.S1_s_at	A	A2TS	POPTR_0013s15480	POPTR_0019s15210 (11)//POPTR_0013s15480 (11)	scaffold_13:15435676-15435858(-) (11)//scaffold_19:15771309-15771491(-) (11)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g60330.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g083650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.137458.1.S1_at	A	A1TS	POPTR_0010s06670	POPTR_0010s06670 (11)	scaffold_10:7966108-7967334(+) (11)	NA	O32107	Uncharacterized membrane protein yuiD	AT1G67600.1	Acid phosphatase/vanadium-dependent haloperoxidase-related protein 	LOC_Os01g67560.1	"Divergent PAP2 family domain containing protein, expressed"	Medtr3g103440.1	Acid phosphatase/vanadium-dependent haloperoxidase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137461.1.S1_at	A	A1TS	POPTR_0013s03260	POPTR_0013s03260 (9)	scaffold_13:2000923-2001892(-) (9)	POPTR_0005s04710 (6)	Q9MAB3	Probable nucleolar protein 5-2	AT3G05060.1	NOP56-like pre RNA processing ribonucleoprotein 	LOC_Os03g22740.1	"nucleolar protein NOP5-1, putative"	Medtr5g010360.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOP5, N-terminal; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137472.1.S1_at	A	A1TS	POPTR_0006s05620	POPTR_0006s05620 (11)	scaffold_6:3972238-3972752(+) (11)	NA	NA	NA	AT3G57810.3	Cysteine proteinases superfamily protein 	LOC_Os09g31280.2	"OTU-like cysteine protease family protein, putative, expressed"	Medtr3g103530.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137476.1.S1_at	A	A1TS	POPTR_0007s00360	POPTR_0007s00360 (11)	scaffold_7:113286-114032(+) (11)	NA	NA	NA	AT2G31840.1	Thioredoxin superfamily protein 	LOC_Os05g34470.1	expressed protein	Medtr4g134500.1	Thioredoxin-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137477.1.S1_at	A	A1TS	POPTR_0005s16280	POPTR_0005s16280 (9)	scaffold_5:12994262-12997064(+) (9)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006333|chromatin assembly or disassembly||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0003682|chromatin binding||GO:0008270|zinc ion binding"	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.137477.2.S1_at	A	A1TS	POPTR_0002s09010	POPTR_0002s09010 (11)	scaffold_2:6377281-6379422(+) (11)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0008270|zinc ion binding"	GO:0005634|nucleus
PtpAffx.137481.1.S1_at	A	A1TS	POPTR_0006s23990	POPTR_0006s23990 (9)	scaffold_6:22701070-22701346(+) (9)	NA	O81488	PHD finger protein At5g26210	AT5G20510.1	alfin-like 5 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137481.2.S1_a_at	A	A2TS	POPTR_0006s23990	POPTR_0018s05470 (11)//POPTR_0006s23990 (11)	scaffold_18:5040297-5042757(-) (11)//scaffold_6:22697470-22699768(+) (11)	NA	O81488	PHD finger protein At5g26210	AT5G20510.1	alfin-like 5 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1375.2.S1_a_at	A	A1TS	POPTR_0002s19890	POPTR_0002s19890 (11)	scaffold_2:15829605-15830064(+) (11)	NA	Q6GPW4	Transmembrane protein 205	AT3G62580.1	Late embryogenesis abundant protein (LEA) family protein 	LOC_Os11g44940.1	"seed maturation protein PM27, putative, expressed"	Medtr1g107090.1	"Transmembrane protein 205, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137507.1.S1_at	A	A2TS	POPTR_0012s07090	POPTR_0015s07400 (11)//POPTR_0012s07090 (11)	scaffold_12:7775898-7778299(+) (11)//scaffold_15:8592980-8594893(+) (10)	NA	P53997	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.137524.1.S1_s_at	A	A1TS	POPTR_0007s00690	POPTR_0007s00690 (11)	scaffold_7:348241-349221(+) (11)	NA	Q39173	Probable NADP-dependent oxidoreductase P2	AT5G16990.1	Zinc-binding dehydrogenase family protein 	LOC_Os04g41960.1	"NADP-dependent oxidoreductase, putative, expressed"	Medtr4g115680.1	"Alcohol dehydrogenase superfamily, zinc-containing "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.137525.1.S1_s_at	A	A2TS	POPTR_0012s00940	POPTR_0012s00940 (11)//POPTR_0012s00960 (10)	scaffold_12:605364-605855(+) (11)//scaffold_12:626009-626500(+) (10)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os01g50200.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g040170.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137530.1.S1_at	A	A1TS	POPTR_0013s08200	POPTR_0013s08200 (11)	scaffold_13:7218114-7222743(+) (11)	NA	NA	NA	AT2G43945.1	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G59870.1); Has 292 Blast hits to 292 proteins in 84 species: Archae - 0; Bacteria - 122; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). 	LOC_Os01g23680.1	"rossmann fold nucleotide-binding protein involved in DNA uptake, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137532.1.S1_at	A	A1TS	POPTR_0004s04220	POPTR_0004s04220 (10)	scaffold_4:3034249-3036534(+) (10)	POPTR_0011s05110 (6)	Q9ZPH2	Monothiol glutaredoxin-S17	AT4G04950.1	thioredoxin family protein 	LOC_Os10g35720.1	"OsGrx_S17 - glutaredoxin subgroup II, expressed"	AC233659_21.1	Glutaredoxin-related protein; Thioredoxin-like fold AC233659.1 95734-92338 F EGN_Mt090430 200	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.137540.1.S1_at	A	A1TS	POPTR_0006s27100	POPTR_0006s27100 (10)	scaffold_6:25112614-25114864(-) (10)	NA	Q55AX0	Dynamin-like protein C	AT3G19720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g07880.1	"dynamin family protein, putative, expressed"	AC235758_24.1	Dynamin central region; Dynamin; Dynamin GTPase effector AC235758.1 170271-163793 H EGN_Mt090430 200	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.137556.1.S1_at	A	A1TS	POPTR_0005s18400	POPTR_0005s18400 (11)	scaffold_5:16581232-16582023(+) (11)	NA	P47927	Floral homeotic protein APETALA 2	AT4G36920.2	Integrase-type DNA-binding superfamily protein 	LOC_Os04g55560.2	"AP2 domain containing protein, expressed"	Medtr5g016710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.137572.1.S1_at	A	A1TS	POPTR_0002s21790	POPTR_0002s21790 (11)	scaffold_2:18393343-18395311(+) (11)	NA	Q94AD9	Zinc finger CCCH domain-containing protein 3	AT1G04990.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g092550.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.137577.1.S1_s_at	A	A1TS	POPTR_0005s18040	POPTR_0005s18040 (11)	scaffold_5:16050536-16051752(-) (11)	NA	NA	NA	AT3G50620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr5g017700.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13760.1.S1_at	A	A1TS	POPTR_0002s02940	POPTR_0002s02940 (11)	scaffold_2:1806872-1807249(+) (11)	NA	O23052	Uncharacterized TPR repeat-containing protein At1g05150	AT1G05150.1	Calcium-binding tetratricopeptide family protein 	LOC_Os03g15740.1	"uncharacterized TPR repeat-containing protein, putative, expressed"	Medtr1g065540.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.137613.1.S1_s_at	A	A1TS	POPTR_0012s05810	POPTR_0012s05810 (11)	scaffold_12:5618707-5620828(+) (11)	NA	Q9LS42	Protein CASP	AT3G18480.1	CCAAT-displacement protein alternatively spliced product 	LOC_Os03g50300.1	"CASP, putative, expressed"	Medtr4g158400.1	"CASP, C-terminal "	GO:0006891|intra-Golgi vesicle-mediated transport	NA	GO:0030173|integral to Golgi membrane
PtpAffx.137618.1.S1_at	A	A1TS	POPTR_0003s11940	POPTR_0003s11940 (9)	scaffold_3:12654610-12655018(+) (9)	NA	Q8L3Z8	Protein FIZZY-RELATED 2	AT4G22910.1	FIZZY-related 2 	LOC_Os03g03150.2	"WD repeat-containing protein, putative, expressed"	Medtr5g008110.1	Cdc20/Fizzy; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13762.1.S1_s_at	A	A1TS	POPTR_0002s16760	POPTR_0002s16760 (11)	scaffold_2:12524728-12525112(+) (11)	NA	Q54RP0	UDP-galactose:fucoside alpha-3-galactosyltransferase	AT4G01220.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os05g32120.1	"alpha 1,3-xylosyltransferase, putative, expressed"	AC235671_3.1	Reticulon AC235671.2 18499-13273 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137632.1.S1_s_at	A	A1TS	POPTR_0004s14890	POPTR_0004s14890 (9)	scaffold_4:15546939-15547294(-) (11)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137647.1.S1_s_at	A	A1TS	POPTR_0006s14400	POPTR_0006s14400 (11)	scaffold_6:11763195-11763334(+) (11)	NA	Q8RWQ9	Thiol protease aleurain-like	AT3G45310.1	Cysteine proteinases superfamily protein 	LOC_Os09g27030.2	"oryzain gamma chain precursor, putative, expressed"	Medtr4g109600.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.137659.1.S1_at	A	A1TS	POPTR_0009s12510	POPTR_0009s12510 (11)	scaffold_9:10192681-10192931(-) (11)	NA	Q6S001	Kinesin-related protein 11	AT4G39050.1	Kinesin motor family protein 	LOC_Os10g36880.1	"kinesin motor domain containing protein, putative, expressed"	Medtr3g162930.1	"Kinesin, motor region; Zinc finger, RING-type "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.137676.1.S1_at	A	A1TS	POPTR_0016s03700	POPTR_0016s03700 (11)	scaffold_16:2058613-2059752(+) (11)	POPTR_0006s03900 (6)	Q9XX15	Probable ribosome biogenesis protein nep-1	AT3G57000.1	nucleolar essential protein-related 	LOC_Os02g18830.1	"ribosome biogenesis protein NEP1, putative, expressed"	Medtr4g033190.1	Suppressor Mra1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137685.1.S1_s_at	A	A1TS	POPTR_0004s07060	POPTR_0004s07060 (10)	scaffold_4:5873050-5875201(-) (11)	NA	NA	NA	AT5G62650.1	Tic22-like family protein 	LOC_Os01g12550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1377.1.A1_at	A	A1TS	POPTR_0009s16470	POPTR_0009s16470 (11)	scaffold_9:12496527-12496853(-) (11)	NA	O65199	"Superoxide dismutase [Cu-Zn], chloroplastic"	AT2G28190.1	copper/zinc superoxide dismutase 2 	LOC_Os08g44770.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr4g076170.1	"Superoxide dismutase, copper/zinc binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0015934|large ribosomal subunit
PtpAffx.13770.1.S1_s_at	A	A1TS	POPTR_0001s35320	POPTR_0001s35320 (11)	scaffold_1:33677872-33678412(-) (11)	NA	Q9WTK3	Glycosylphosphatidylinositol anchor attachment 1 protein	AT5G19130.2	GPI transamidase component family protein / Gaa1-like family protein 	LOC_Os01g48980.1	"GPI transamidase component family protein, putative, expressed"	Medtr4g143270.1	"Gaa1-like, GPI transamidase component "	NA	NA	GO:0042765|GPI-anchor transamidase complex||GO:0071212|subsynaptic reticulum
PtpAffx.137701.1.S1_at	A	A2TS	POPTR_0001s29790	POPTR_0001s29790 (10)//POPTR_0183s00200 (9)	scaffold_1:28402968-28403489(+) (10)//scaffold_183:2218-2742(-) (9)	NA	NA	NA	AT5G14930.2	senescence-associated gene 101 	LOC_Os09g22450.1	"lipase, putative, expressed"	Medtr6g008690.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.137708.1.S1_at	A	A1TS	POPTR_0001s41070	POPTR_0001s41070 (9)	scaffold_1:40729396-40729939(+) (9)	NA	Q54ID0	Cytochrome c oxidase copper chaperone	AT3G15352.1	cytochrome c oxidase 17 	LOC_Os02g55134.1	"cytochrome c oxidase copper chaperone, putative, expressed"	Medtr2g100210.1	Cytochrome C oxidase copper chaperone 	GO:0006825|copper ion transport	GO:0016531|copper chaperone activity	GO:0005758|mitochondrial intermembrane space
PtpAffx.137722.1.S1_at	A	A1TS	POPTR_0009s01460	POPTR_0009s01460 (11)	scaffold_9:1792696-1793296(-) (11)	NA	Q8T1P1	Uncharacterized protein DDB_G0273453/DDB_G0273565	AT5G60760.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g39870.1	"2-phosphoglycerate kinase-related, putative, expressed"	AC235487_44.1	"2-phosphoglycerate kinase-related, putative AC235487.1 210241-205859 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13773.2.A1_at	A	A1TS	POPTR_0005s24600	POPTR_0005s24600 (10)	scaffold_5:23090476-23091081(-) (10)	NA	NA	NA	AT2G20515.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; Has 71 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g43670.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137731.1.S1_s_at	A	A1TS	POPTR_0008s12680	POPTR_0008s12680 (11)	scaffold_8:8198395-8198475(+) (11)	NA	NA	NA	AT1G71080.1	RNA polymerase II transcription elongation factor 	LOC_Os01g32300.2	expressed protein	Medtr4g156620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13774.1.S1_at	A	A1TS	POPTR_0001s16050	POPTR_0001s16050 (9)	scaffold_1:12857145-12857427(+) (11)	NA	O81123	Zinc transporter 1	AT3G12750.1	zinc transporter 1 precursor 	LOC_Os07g12890.2	"metal cation transporter, putative, expressed"	Medtr3g107170.2	Zinc/iron permease 	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.13775.1.A1_at	A	A1TS	POPTR_0003s05930	POPTR_0003s05930 (11)	scaffold_3:7296792-7297174(+) (11)	NA	Q15269	Periodic tryptophan protein 2 homolog	AT1G15440.2	periodic tryptophan protein 2 	LOC_Os05g44320.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g083830.1	"Periodic tryptophan protein-associated region; Quinoprotein amine dehydrogenase, beta chain-like; WD40-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.13775.2.A1_at	A	A1TS	POPTR_0001s17340	POPTR_0001s17340 (10)	scaffold_1:14144471-14145102(-) (10)	NA	Q15269	Periodic tryptophan protein 2 homolog	AT1G15440.1	periodic tryptophan protein 2 	LOC_Os05g44320.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g083830.1	"Periodic tryptophan protein-associated region; Quinoprotein amine dehydrogenase, beta chain-like; WD40-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.13776.1.A1_at	A	A1MS	POPTR_0005s17620	POPTR_0005s17620 (10)	scaffold_5:15200725-15201021(-) (10)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT4G24660.1	homeobox protein 22 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g074550.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137765.1.S1_at	A	A2TS	POPTR_0006s27400	POPTR_0006s27400 (11)//POPTR_0018s02080 (9)	scaffold_18:1842400-1843490(-) (9)//scaffold_6:25304593-25305737(-) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.1	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13777.1.S1_at	A	A1TS	POPTR_0001s35570	POPTR_0001s35570 (11)	scaffold_1:33905247-33906607(+) (11)	NA	Q9RB36	tRNA pseudouridine synthase B	AT5G14460.1	Pseudouridine synthase family protein 	LOC_Os05g01750.1	"TruB family pseudouridylate synthase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13778.1.S1_a_at	A	A1TS	POPTR_0018s05050	POPTR_0018s05050 (11)	scaffold_18:4467840-4467997(-) (11)	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.2	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os06g36770.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13778.1.S1_at	A	A1TS	POPTR_0018s05050	POPTR_0018s05050 (11)	scaffold_18:4467291-4468330(-) (11)	NA	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.2	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os06g36770.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137815.1.S1_at	A	A1TS	POPTR_0009s15000	POPTR_0009s15000 (10)	scaffold_9:11642333-11643391(-) (10)	NA	B0G107	Protein SAMHD1 homolog	AT5G40270.1	HD domain-containing metal-dependent phosphohydrolase family protein 	LOC_Os01g01920.2	"HD domain containing protein 2, putative, expressed"	Medtr5g035750.1	"Metal-dependent phosphohydrolase, HD region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137823.1.S1_at	A	A1TS	POPTR_0010s21430	POPTR_0010s21430 (11)	scaffold_10:18716394-18718777(-) (11)	NA	Q8Z068	Methionyl-tRNA synthetase	AT3G55400.1	methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) 	LOC_Os03g11120.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr1g023340.1	"Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.137829.1.S1_at	A	A1TS	POPTR_0001s41490	POPTR_0001s41490 (9)	scaffold_1:41118955-41119343(+) (9)	NA	Q9ZNU2	NAC domain-containing protein 18	AT3G15510.1	NAC domain containing protein  2 	LOC_Os07g37920.1	"no apical meristem protein, putative, expressed"	Medtr7g100100.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.137838.1.A1_a_at	A	A1TS	POPTR_0013s03070	POPTR_0013s03070 (11)	scaffold_13:1868164-1868681(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.13785.1.S1_s_at	A	A1TS	POPTR_0001s26430	POPTR_0001s26430 (11)	scaffold_1:25466772-25466846(-) (11)	NA	Q38873	Calcium-dependent protein kinase 7	AT5G12480.1	calmodulin-domain protein kinase 7 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.137850.1.S1_s_at	A	A1TS	POPTR_0001s30610	POPTR_0001s30610 (11)	scaffold_1:29085158-29086679(-) (11)	NA	Q8L7W8	Alpha-L-fucosidase 2	AT4G34260.1	"1,2-alpha-L-fucosidases "	LOC_Os10g19880.1	"alpha-1,2-fucosidase, putative, expressed"	Medtr8g129740.1	"Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13787.1.S1_at	A	A1TS	POPTR_0002s19900	POPTR_0002s19900 (10)	scaffold_2:15835104-15835526(-) (10)	NA	NA	NA	AT1G02660.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g15000.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.137882.1.S1_at	A	A1TS	POPTR_0007s11850	POPTR_0007s11850 (9)	scaffold_7:12216049-12216405(-) (9)	NA	Q59536	Protease 2	AT5G66960.1	Prolyl oligopeptidase family protein 	LOC_Os09g29950.3	"OsPOP19 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr5g050120.1	"Peptidase S9A, prolyl oligopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.13789.1.S1_s_at	A	A1TS	POPTR_0014s12000	POPTR_0014s12000 (11)	scaffold_14:8883877-8884490(-) (11)	NA	Q9SRW9	Cellulose synthase-like protein D5	AT1G02730.1	cellulose synthase-like D5 	LOC_Os12g36890.1	"CSLD4 - cellulose synthase-like family D, expressed"	Medtr7g132520.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.13792.1.S1_at	A	A1TS	POPTR_0015s00770	POPTR_0015s00770 (11)	scaffold_15:449606-453044(+) (11)	NA	NA	NA	AT3G49390.2	CTC-interacting domain 10 	LOC_Os08g02330.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122920.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.13792.2.S1_at	A	A1TS	POPTR_0012s02890	POPTR_0012s02890 (11)	scaffold_12:2348405-2351430(+) (11)	NA	NA	NA	AT3G49390.2	CTC-interacting domain 10 	LOC_Os08g02330.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122920.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.13792.3.S1_a_at	A	A1TS	POPTR_0015s00770	POPTR_0015s00770 (11)	scaffold_15:448736-449282(+) (11)	NA	NA	NA	AT3G49390.2	CTC-interacting domain 10 	LOC_Os08g02330.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122920.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.13792.3.S1_at	A	A1MS	POPTR_0015s00770	POPTR_0015s00770 (11)	scaffold_15:448365-449230(+) (11)	NA	NA	NA	AT3G49390.2	CTC-interacting domain 10 	LOC_Os08g02330.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g122920.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.137920.1.S1_at	A	A1TS	POPTR_0007s08090	POPTR_0007s08090 (10)	scaffold_7:6581324-6583835(-) (10)	NA	NA	NA	AT1G79200.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g07420.1	"splicing factor, arginine/serine-rich 12, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137949.1.A1_s_at	A	A1TS	POPTR_0001s11990	POPTR_0001s11990 (11)	scaffold_1:9305763-9305804(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13795.1.A1_at	A	A1TS	POPTR_0017s08630	POPTR_0017s08630 (11)	scaffold_17:7247502-7247986(-) (11)	NA	Q94BZ5	Heat stress transcription factor A-5	AT4G13980.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os02g29340.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g132650.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.137956.1.S1_at	A	A1TS	POPTR_0006s25050	POPTR_0006s25050 (10)	scaffold_6:23498997-23500188(-) (10)	NA	Q8VY07	Clathrin interactor EPSIN 1	AT5G11710.1	ENTH/VHS family protein 	LOC_Os04g51120.1	"ENTH domain containing protein, expressed"	Medtr7g005920.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137959.1.S1_at	A	A1TS	POPTR_0016s11960	POPTR_0016s11960 (10)	scaffold_16:11136605-11137575(+) (10)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr4g012530.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.137964.1.S1_s_at	A	A1TS	POPTR_0013s00280	POPTR_0013s00280 (11)	scaffold_13:66506-67397(+) (11)	NA	Q6P988	Protein notum homolog	AT3G05910.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134700.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13797.1.A1_s_at	A	A1TS	POPTR_0010s20290	POPTR_0010s20290 (11)	scaffold_10:17937682-17938187(-) (11)	NA	Q9FIA0	Cytokinin-N-glucosyltransferase 2	AT3G55700.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g60960.1	"cytokinin-N-glucosyltransferase 1, putative, expressed"	Medtr3g092660.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.137974.1.S1_at	A	A2TS	POPTR_0011s10390	POPTR_0011s10390 (11)//POPTR_0001s39020 (10)	scaffold_1:38265937-38266304(+) (10)//scaffold_11:12836023-12836390(+) (11)	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g47530.2	"CGMC_MAPKCMGC_2.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.137977.1.S1_s_at	A	A1TS	POPTR_0015s11610	POPTR_0015s11610 (11)	scaffold_15:12160604-12163395(+) (11)	NA	Q93Y09	Serine carboxypeptidase-like 45	AT1G28110.2	serine carboxypeptidase-like 45 	LOC_Os11g31980.1	"OsSCP63 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr4g152110.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.13798.1.S1_at	A	A1TS	POPTR_0017s13410	POPTR_0017s13410 (10)	scaffold_17:13584399-13585488(+) (10)	NA	Q42429	Agamous-like MADS-box protein AGL8 homolog	AT5G60910.1	AGAMOUS-like 8 	LOC_Os07g41370.1	"OsMADS18 - MADS-box family gene with MIKCc type-box, expressed"	Medtr8g077590.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.137981.1.S1_a_at	A	A2TS	POPTR_0012s08010	POPTR_0012s08010 (11)//POPTR_0015s08540 (11)	scaffold_12:9018800-9018989(+) (11)//scaffold_15:9827445-9827634(+) (11)	NA	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.137981.1.S1_at	A	A1TS	POPTR_0015s08540	POPTR_0015s08540 (11)	scaffold_15:9827495-9828504(+) (11)	POPTR_0012s08010 (6)	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.137984.1.S1_s_at	A	A1TS	POPTR_0013s10610	POPTR_0013s10610 (11)	scaffold_13:10972262-10972763(+) (11)	NA	Q8CFE4	SCY1-like protein 2	AT1G22870.1	Protein kinase family protein with ARM repeat domain 	LOC_Os01g42950.1	"protein kinase family protein, putative, expressed"	Medtr4g032040.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.137989.1.S1_at	A	A1TS	POPTR_0003s01530	POPTR_0003s01530 (11)	scaffold_3:1388854-1389300(+) (11)	NA	Q9LDX1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	LOC_Os12g09580.1	"leafbladeless1, putative, expressed"	Medtr2g007820.1	"Emr1, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138.2.S1_s_at	A	A1TS	POPTR_0001s00450	POPTR_0001s00450 (11)	scaffold_1:348865-350625(+) (11)	NA	NA	NA	AT4G16510.1	YbaK/aminoacyl-tRNA synthetase-associated domain 	LOC_Os02g44330.1	"rho guanine nucleotide exchange factor, putative, expressed"	Medtr8g105950.1	YbaK/prolyl-tRNA synthetase associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138005.1.S1_at	A	A1TS	POPTR_0004s22680	POPTR_0004s22680 (9)	scaffold_4:21538644-21539511(-) (9)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT3G44880.1	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain 	LOC_Os03g05310.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g076120.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.13804.1.S1_s_at	A	A1TS	POPTR_0005s12860	POPTR_0005s12860 (11)	scaffold_5:9669399-9669833(+) (11)	NA	Q94ID7	"Geranylgeranyl pyrophosphate synthase, chloroplastic"	AT4G36810.1	geranylgeranyl pyrophosphate synthase 1 	LOC_Os07g39270.2	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.13806.1.S1_at	A	A1TS	POPTR_0005s07170	POPTR_0005s07170 (11)	scaffold_5:4825598-4825788(-) (11)	NA	NA	NA	AT5G08720.1	CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g62170.1	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13806.2.A1_at	A	A1MS	POPTR_0005s07170	POPTR_0005s07170 (11)	scaffold_5:4822197-4822302(-) (11)	NA	NA	NA	AT5G08720.1	CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g62170.1	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13806.2.A1_s_at	A	A1TS	POPTR_0005s07170	POPTR_0005s07170 (11)	scaffold_5:4822127-4822663(-) (11)	NA	NA	NA	AT5G08720.1	CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g62170.1	"cyclase/dehydrase family protein, expressed"	Medtr4g144020.1	Streptomyces cyclase/dehydrase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138084.1.S1_s_at	A	A1TS	POPTR_0009s06530	POPTR_0009s06530 (11)	scaffold_9:6286791-6288460(+) (11)	NA	Q8LP17	"Carotenoid 9,10(9',10')-cleavage dioxygenase 1"	AT3G63520.1	carotenoid cleavage dioxygenase 1 	LOC_Os12g44310.2	"carotenoid cleavage dioxygenase, putative, expressed"	Medtr5g025290.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13809.1.S1_at	A	A1TS	POPTR_0014s06600	POPTR_0014s06600 (9)	scaffold_14:5016790-5017231(+) (9)	NA	O22131	LOB domain-containing protein 18	AT2G45420.1	LOB domain-containing protein 18 	LOC_Os03g14270.1	"DUF260 domain containing protein, putative"	Medtr5g087820.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138099.1.S1_s_at	A	A1TS	POPTR_0010s01800	POPTR_0010s01800 (11)	scaffold_10:1975454-1975734(+) (11)	NA	O81283	"Translocase of chloroplast 159, chloroplastic"	AT4G02510.1	translocon at the outer envelope membrane of chloroplasts 159 	LOC_Os05g05950.1	"TOC159, putative, expressed"	Medtr4g136870.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.1381.1.S1_at	A	A1TS	POPTR_0011s09170	POPTR_0011s09170 (11)	scaffold_11:11329109-11329432(-) (11)	NA	Q642R9	Rab3 GTPase-activating protein catalytic subunit	AT5G55060.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58510.1); Has 223 Blast hits to 218 proteins in 80 species: Archae - 0; Bacteria - 2; Metazoa - 117; Fungi - 6; Plants - 65; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). 	LOC_Os07g32670.1	expressed protein	Medtr5g100640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138124.1.S1_s_at	A	A1TS	POPTR_0002s05060	POPTR_0002s05060 (11)	scaffold_2:3279147-3280236(+) (11)	POPTR_0005s23490 (7)	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr5g006700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138147.1.S1_s_at	A	A7TS	POPTR_0001s39630	POPTR_0001s39650 (11)//POPTR_0001s39630 (11)//POPTR_0001s39660 (11)//POPTR_0001s39940 (11)//POPTR_0001s39680 (11)//POPTR_0001s39920 (10)//POPTR_0001s39900 (9)	scaffold_1:38849174-38849698(+) (11)//scaffold_1:38883336-38883860(+) (11)//scaffold_1:38932461-38932985(+) (11)//scaffold_1:38975851-38976375(+) (11)//scaffold_1:39112359-39112883(+) (9)//scaffold_1:39173661-39174166(+) (10)//scaffold_1:39214434-39214958(+) (11)	POPTR_0001s39670 (6)	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.138153.1.S1_s_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (11)	scaffold_18:10249377-10251089(+) (11)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13816.1.S1_at	A	A1TS	POPTR_0001s05310	POPTR_0001s05310 (11)	scaffold_1:4080317-4080840(+) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.138160.1.S1_at	A	A1TS	POPTR_0001s11420	POPTR_0001s11420 (11)	scaffold_1:8893706-8893758(+) (11)	NA	NA	NA	AT1G64680.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os08g02210.2	expressed protein	Medtr3g109380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138160.1.S1_s_at	A	A1TS	POPTR_0001s11420	POPTR_0001s11420 (11)	scaffold_1:8893778-8894361(+) (11)	NA	NA	NA	AT1G64680.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os08g02210.2	expressed protein	Medtr3g109380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138169.1.S1_at	A	A1TS	POPTR_0002s25600	POPTR_0002s25600 (11)	scaffold_2:22690159-22690965(+) (11)	POPTR_0014s18620 (6)	Q9C0C7	Activating molecule in BECN1-regulated autophagy protein 1	AT1G04140.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g18820.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g117620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138176.1.S1_s_at	A	A1TS	POPTR_0007s09270	POPTR_0007s09270 (11)	scaffold_7:8641794-8642489(-) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G66060.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr5g022950.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.13818.1.S1_at	A	A2TS	POPTR_0019s04110	POPTR_0019s04110 (11)//POPTR_2251s00200 (11)	scaffold_19:4216364-4217012(+) (11)//scaffold_2251:384-1369(+) (11)	NA	Q9M8Y5	GDSL esterase/lipase LTL1	AT3G04290.1	Li-tolerant lipase 1 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g143160.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.138182.1.S1_at	A	A1TS	POPTR_0001s03050	POPTR_0001s03050 (10)	scaffold_1:2402564-2402892(-) (10)	NA	O49725	Probable purine permease 10	AT4G18210.1	purine permease 10 	LOC_Os02g46380.2	"purine permease, putative, expressed"	Medtr2g018910.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138184.1.S1_at	A	A1TS	POPTR_0001s02650	POPTR_0001s02650 (10)	scaffold_1:2100706-2101650(-) (10)	NA	NA	NA	AT1G32540.3	lsd one like 1 	LOC_Os08g06280.2	"LSD1 zinc finger domain containing protein, expressed"	Medtr8g102780.1	"Zinc finger, LSD1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138198.1.S1_s_at	A	A2TS	POPTR_0012s09300	POPTR_0427s00200 (11)//POPTR_0012s09300 (11)	scaffold_12:10334773-10335208(-) (11)//scaffold_427:12494-12929(-) (11)	NA	NA	NA	AT5G63160.1	BTB and TAZ domain protein 1 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr8g109870.1	"Zinc finger, TAZ-type; BTB/POZ; ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.13821.1.A1_at	A	A1TS	POPTR_0018s12810	POPTR_0018s12810 (10)	scaffold_18:13335379-13336609(+) (10)	NA	Q27GK7	Topless-related protein 4	AT3G15880.1	WUS-interacting protein 2 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr8g121060.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Quinoprotein amine dehydrogenase, beta chain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138213.1.S1_at	A	A1TS	POPTR_0001s47540	POPTR_0001s47540 (11)	scaffold_1:47695409-47696387(+) (11)	NA	Q9FKT0	Actin-related protein 8	AT5G56180.1	actin-related protein 8 	LOC_Os04g57210.1	"actin-6, putative, expressed"	Medtr3g016840.1	Cyclin-like F-box; Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.138224.1.S1_at	A	A1TS	POPTR_0005s22580	POPTR_0005s22580 (10)	scaffold_5:21495186-21495522(-) (10)	POPTR_0002s05920 (8)	Q680C0	GDSL esterase/lipase At4g10955	AT5G50890.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g54810.1	"lipase, putative, expressed"	Medtr5g098440.1	"lipase class 3 family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138225.1.S1_at	A	A1TS	POPTR_0005s23210	POPTR_0005s23210 (11)	scaffold_5:22045922-22047858(-) (11)	NA	Q0WRC9	F-box protein SKIP17	AT4G02740.1	F-box/RNI-like superfamily protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138239.1.S1_at	A	A1TS	POPTR_0004s14260	POPTR_0004s14260 (10)	scaffold_4:14726344-14729073(+) (10)	NA	O95562	Vesicle transport protein SFT2B	AT5G23550.1	Got1/Sft2-like vescicle transport protein family 	LOC_Os02g35640.1	"SFT2, putative, expressed"	Medtr6g070860.1	SFT2-like 	GO:0016192|vesicle-mediated transport	NA	NA
PtpAffx.138243.1.S1_at	A	A1TS	POPTR_0006s21290	POPTR_0006s21290 (11)	scaffold_6:20359517-20359983(-) (11)	NA	NA	NA	AT3G11890.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os08g29100.1	"SAM domain family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138243.2.S1_a_at	A	A1TS	POPTR_0006s21290	POPTR_0006s21290 (11)	scaffold_6:20360504-20360600(-) (11)	NA	NA	NA	AT3G11890.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os08g29100.1	"SAM domain family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138248.1.S1_at	A	A1MS	POPTR_0014s13410	POPTR_0014s13410 (11)	scaffold_14:9871307-9871631(-) (11)	NA	Q6NTT6	Mitochondrial ubiquitin ligase activator of nfkb 1	AT1G63900.1	E3 Ubiquitin ligase family protein 	LOC_Os07g45350.2	"zinc finger, RING-type, putative, expressed"	Medtr1g111550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138249.1.S1_s_at	A	A1TS	POPTR_0007s06020	POPTR_0007s06020 (11)	scaffold_7:4166071-4166861(-) (11)	NA	NA	NA	AT4G39690.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane protein Mitofilin (InterPro:IPR019133); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g54410.1	expressed protein	Medtr4g140510.1	hypothetical protein 	NA	NA	GO:0031305|integral to mitochondrial inner membrane
PtpAffx.138251.1.S1_at	A	A1TS	POPTR_0008s14580	POPTR_0008s14580 (11)	scaffold_8:9663236-9664264(+) (11)	NA	Q0WPE9	Nucleobase-ascorbate transporter 7	AT1G60030.1	nucleobase-ascorbate transporter 7 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g073630.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.138263.1.S1_at	A	A1TS	POPTR_0011s09710	POPTR_0011s09710 (11)	scaffold_11:12098452-12099015(+) (11)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT5G55970.2	RING/U-box superfamily protein 	LOC_Os01g50750.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g079910.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138269.1.S1_at	A	A1TS	POPTR_0004s22110	POPTR_0004s22110 (11)	scaffold_4:21058081-21060431(+) (11)	NA	Q5H9R7	Serine/threonine-protein phosphatase 6 regulatory subunit 3	AT1G07990.1	SIT4 phosphatase-associated family protein 	LOC_Os05g51490.2	"SIT4 phosphatase-associated protein domain containing protein, expressed"	Medtr2g110170.2	SIT4 phosphatase-associated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138282.1.S1_s_at	A	A1TS	POPTR_0005s10990	POPTR_0005s10990 (11)	scaffold_5:7906316-7906829(-) (11)	NA	Q42560	Aconitate hydratase 1	AT4G35830.1	aconitase 1 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr5g022930.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.138290.1.S1_s_at	A	A1TS	POPTR_0005s21620	POPTR_0005s21620 (11)	scaffold_5:20732972-20733572(+) (11)	POPTR_0002s06710 (7)	Q9SJ22	Probable cellulose synthase A catalytic subunit 9 [UDP-forming]	AT2G21770.1	cellulose synthase A9 	LOC_Os07g24190.1	"CESA3 - cellulose synthase, expressed"	Medtr1g124990.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.138291.1.S1_s_at	A	A1TS	POPTR_0004s21100	POPTR_0004s21100 (11)	scaffold_4:20377856-20379461(-) (11)	NA	O35261	Transcription factor E2F3	AT5G22220.2	E2F transcription factor 1 	LOC_Os12g06200.1	"E2F family transcription factor protein, putative, expressed"	AC146557_13.1	Winged helix repressor DNA-binding AC146557.33 75654-81329 F EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005667|transcription factor complex
PtpAffx.138318.1.S1_s_at	A	A1TS	POPTR_0007s04870	POPTR_0007s04870 (11)	scaffold_7:3053971-3054114(-) (11)	NA	Q8LLE5	Filament-like plant protein (Fragment)	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os11g06910.2	"myosin heavy chain-related, putative, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138329.1.S1_at	A	A1TS	POPTR_0003s04650	POPTR_0003s04650 (11)	scaffold_3:5565441-5566099(-) (11)	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os01g53880.6	"OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.138338.1.S1_at	A	A1TS	POPTR_0001s38760	POPTR_0001s38760 (11)	scaffold_1:38001616-38002144(-) (11)	NA	Q9SQ80	Gibberellin 2-beta-dioxygenase 1	AT1G78440.1	Arabidopsis thaliana gibberellin 2-oxidase 1 	LOC_Os01g55240.1	"gibberellin 2-beta-dioxygenase, putative, expressed"	Medtr2g024600.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.138344.1.S1_at	A	A1TA	POPTR_0006s22690	POPTR_0006s22690 (11)	scaffold_6:21628988-21629296(-) (11)	POPTR_0006s22660 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138350.1.S1_at	A	A1TS	POPTR_0015s01020	POPTR_0015s01020 (11)	scaffold_15:593606-594108(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G46620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g02330.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g123370.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.138361.1.S1_at	A	A1TS	POPTR_0012s07840	POPTR_0012s07840 (10)	scaffold_12:8793670-8794058(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138367.1.S1_s_at	A	A1TS	POPTR_0008s07600	POPTR_0008s07600 (11)	scaffold_8:4652614-4655370(+) (11)	NA	Q93V61	Phospholipase A(1) LCAT3	AT3G03310.1	lecithin:cholesterol acyltransferase 3 	LOC_Os09g33820.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr7g090070.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138377.1.A1_at	A	A1TS	POPTR_0011s03990	POPTR_0011s03990 (9)	scaffold_11:4056307-4056584(+) (9)	NA	NA	NA	AT1G11380.1	PLAC8 family protein 	LOC_Os07g36820.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g124650.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138381.1.S1_at	A	A1TS	POPTR_0014s05830	POPTR_0014s05830 (11)	scaffold_14:4367988-4368544(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138393.1.S1_at	A	A1TA	POPTR_0005s12020	POPTR_0005s12020 (9)	scaffold_5:8801359-8801825(+) (9)	NA	NA	NA	AT3G51060.1	Lateral root primordium (LRP) protein-related 	LOC_Os09g36160.1	"LRP1, putative, expressed"	Medtr5g021040.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138426.1.S1_at	A	A1TS	POPTR_0010s24400	POPTR_0010s24400 (10)	scaffold_10:20628434-20628841(+) (10)	NA	A0JNC2	R3H domain-containing protein 2	AT3G10770.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr1g117280.1	Single-stranded nucleic acid binding R3H 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.138433.1.S1_s_at	A	A1TS	POPTR_0012s09940	POPTR_0012s09940 (11)	scaffold_12:10823568-10824827(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os08g41880.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g109230.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.13846.1.S1_at	A	A1TS	POPTR_0001s08570	POPTR_0001s08570 (11)	scaffold_1:6532576-6532893(+) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G63000.1	nucleotide-rhamnose synthase/epimerase-reductase 	LOC_Os02g45540.1	"synthase, putative, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138477.1.S1_at	A	A1TS	POPTR_0014s09540	POPTR_0014s09540 (9)	scaffold_14:7097651-7098179(+) (9)	NA	Q1ECI2	Ethylene-responsive transcription factor ERF023	AT1G01250.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g46400.1	"AP2 domain containing protein, expressed"	Medtr5g012990.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.138519.1.S1_at	A	A1TS	POPTR_0016s05850	POPTR_0016s05850 (9)	scaffold_16:3777511-3777953(-) (9)	NA	NA	NA	NA	NA	LOC_Os02g53360.1	expressed protein	Medtr7g112050.1	WRC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13856.1.S1_at	A	A1TS	POPTR_0006s04010	POPTR_0006s04010 (9)	scaffold_6:2720661-2721207(-) (9)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT3G57070.1	Glutaredoxin family protein 	LOC_Os03g24030.1	"glutaredoxin, putative, expressed"	Medtr7g107280.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.13858.1.A1_at	A	A1TS	POPTR_0003s07630	POPTR_0003s07630 (10)	scaffold_3:9161952-9162124(-) (10)	NA	O82528	60S ribosomal protein L15	AT4G16720.1	Ribosomal protein L23/L15e family protein 	LOC_Os05g19370.1	"60S ribosomal protein L15, putative, expressed"	Medtr2g017710.1	"Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.138587.1.A1_at	A	A2TS	POPTR_0553s00210	POPTR_0553s00210 (11)//POPTR_0011s13970 (9)	scaffold_11:16575600-16576050(+) (10)//scaffold_553:11822-12272(-) (11)	NA	NA	NA	AT1G50910.1	unknown protein; Has 1105 Blast hits to 802 proteins in 217 species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi - 210; Plants - 58; Viruses - 6; Other Eukaryotes - 207 (source: NCBI BLink). 	LOC_Os09g32710.1	expressed protein	Medtr3g020830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138591.1.A1_at	A	A1TS	POPTR_0010s00800	POPTR_0010s00800 (11)	scaffold_10:513288-513714(+) (11)	NA	Q9Y4D2	Sn1-specific diacylglycerol lipase alpha	AT4G16070.1	"Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 "	LOC_Os01g20840.1	"lipase class 3 family protein, putative, expressed"	Medtr8g025380.1	"lipase class 3 family protein, related "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.138607.1.A1_at	A	A1MS	POPTR_0010s26060	POPTR_0010s26060 (11)	scaffold_10:21434027-21434094(-) (11)	NA	NA	NA	AT1G16790.1	ribosomal protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138607.1.A1_s_at	A	A1TS	POPTR_0010s26060	POPTR_0010s26060 (11)	scaffold_10:21434127-21434302(-) (11)	NA	NA	NA	AT1G16790.1	ribosomal protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138614.1.A1_at	A	A1TS	POPTR_0013s10990	POPTR_0013s10990 (11)	scaffold_13:11667882-11668055(-) (11)	POPTR_0013s09940 (6)	Q94K73	"Phenylalanyl-tRNA synthetase, chloroplastic/mitochondrial"	AT3G58140.1	phenylalanyl-tRNA synthetase class IIc family protein 	LOC_Os12g34860.1	"phenylalanyl-tRNA synthetase, putative, expressed"	Medtr7g094230.1	"Phenylalanyl-tRNA synthetase, mitochondrial; Ribosomal protein L20; Aminoacyl-transfer RNA synthetase, class II "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006432|phenylalanyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0008033|tRNA processing||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0004826|phenylalanine-tRNA ligase activity||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.138621.1.A1_at	A	A2TS	POPTR_0003s21140	POPTR_0629s00210 (11)//POPTR_0003s21140 (11)	scaffold_3:19412425-19413356(+) (11)//scaffold_629:10813-11725(-) (11)	NA	O05235	Uncharacterized hydrolase yugF	AT5G19850.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g38830.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr5g067450.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138621.2.S1_a_at	A	A1TS	POPTR_0003s21140	POPTR_0003s21140 (9)	scaffold_3:19411189-19411296(+) (9)	NA	O05235	Uncharacterized hydrolase yugF	AT5G19850.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g38830.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr5g067450.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138630.1.A1_at	A	A1TS	POPTR_0001s20370	POPTR_0001s20370 (11)	scaffold_1:18256296-18256665(-) (11)	POPTR_0008s02760 (8)	Q8LPH6	Transcription factor MYB86	AT3G13890.2	myb domain protein 26 	LOC_Os01g51260.1	"MYB family transcription factor, putative, expressed"	Medtr2g120890.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138635.1.A1_at	A	A1TS	POPTR_0019s08650	POPTR_0019s08650 (11)	scaffold_19:10182333-10183253(-) (11)	NA	Q6DBN5	U-box domain-containing protein 62	AT5G05230.1	RING/U-box superfamily protein 	LOC_Os03g60140.1	"U-box domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13864.1.A1_at	A	A1TS	POPTR_0016s00540	POPTR_0016s00540 (11)	scaffold_16:183444-183796(-) (11)	NA	Q28147	Nuclear inhibitor of protein phosphatase 1	AT5G47790.1	SMAD/FHA domain-containing protein  	LOC_Os08g23680.3	"FHA domain containing protein, putative, expressed"	Medtr2g032980.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138640.1.A1_at	A	A1TS	POPTR_0008s05650	POPTR_0008s05650 (9)	scaffold_8:3286703-3287133(+) (9)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os05g02020.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.13865.2.S1_at	A	A1TS	POPTR_0016s02530	POPTR_0016s02530 (9)	scaffold_16:1249186-1249251(+) (9)	NA	NA	NA	AT3G56810.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast hits to 14 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g104760.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138650.1.A1_s_at	A	A1TS	POPTR_0015s01330	POPTR_0015s01330 (9)	scaffold_15:826379-826818(+) (11)	NA	NA	NA	AT5G26760.2	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g04370.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1387.1.A1_at	A	A1TS	POPTR_0009s08000	POPTR_0009s08000 (11)	scaffold_9:7420996-7421210(-) (11)	NA	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os03g18454.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed"	Medtr3g034410.1	"Gamma-interferon-inducible lysosomal thiol reductase precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138763.1.A1_at	A	A1TS	POPTR_0013s01990	POPTR_0013s01990 (11)	scaffold_13:1149797-1149904(-) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT3G50700.1	indeterminate(ID)-domain 2 	LOC_Os02g31890.1	ZOS2-08 - C2H2 zinc finger protein	Medtr7g130150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.13877.1.S1_at	A	A1TS	POPTR_0007s08380	POPTR_0007s08380 (10)	scaffold_7:7149321-7149822(+) (10)	NA	Q0VFE3	Post-GPI attachment to proteins factor 3	AT1G16560.3	Per1-like family protein 	LOC_Os05g13330.1	"per1-like family protein, putative, expressed"	Medtr6g089390.1	Per1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138786.1.A1_at	A	A1TS	POPTR_0005s21670	POPTR_0005s21670 (11)	scaffold_5:20773301-20774011(+) (11)	NA	Q2KI24	Methenyltetrahydrofolate synthase domain-containing protein	AT1G76730.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os12g07020.1	"5-formyltetrahydrofolate cyclo-ligase, putative, expressed"	NA	NA	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0030272|5-formyltetrahydrofolate cyclo-ligase activity	NA
PtpAffx.138791.1.A1_at	A	A1TS	POPTR_0002s25080	POPTR_0002s25080 (11)	scaffold_2:22274368-22274564(+) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT3G25290.2	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr7g046190.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138801.1.A1_at	A	A1TS	POPTR_0012s01800	POPTR_0012s01800 (11)	scaffold_12:1357207-1357765(-) (11)	NA	Q9LFT8	Cyclin-dependent kinase C-1	AT5G10270.1	cyclin-dependent kinase C;1 	LOC_Os01g72790.1	"cyclin-dependent kinase, putative, expressed"	Medtr5g008910.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138813.1.A1_s_at	A	A1TS	POPTR_0013s00580	POPTR_0013s00580 (11)	scaffold_13:273308-273905(-) (11)	NA	Q91V92	ATP-citrate synthase	AT1G09430.1	ATP-citrate lyase A-3 	LOC_Os11g47330.1	"ATP-grasp domain containing protein, expressed"	Medtr5g035230.1	"ATP-grasp fold, succinyl-CoA synthetase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138829.1.A1_at	A	A1TS	POPTR_0011s09610	POPTR_0011s09610 (11)	scaffold_11:11952810-11953149(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT5G55830.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os06g17490.1	expressed protein	Medtr3g009180.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138853.1.A1_at	A	A1TS	POPTR_0002s01040	POPTR_0002s01040 (9)	scaffold_2:524614-524709(+) (9)	NA	P46573	"Protein kinase APK1B, chloroplastic"	AT1G76360.1	Protein kinase superfamily protein 	LOC_Os04g47620.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.138864.1.A1_at	A	A1TS	POPTR_0006s11590	POPTR_0006s11590 (11)	scaffold_6:8806136-8806359(+) (11)	NA	Q2PCF1	Pleiotropic drug resistance protein 2	AT1G66950.1	pleiotropic drug resistance 11 	LOC_Os01g42410.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr7g126900.1	PAK-box/P21-Rho-binding; AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.13888.1.S1_at	A	A1TS	POPTR_0004s10680	POPTR_0004s10680 (11)	scaffold_4:9203679-9204631(+) (11)	NA	NA	NA	AT5G08120.1	movement protein binding protein 2C 	LOC_Os06g17440.1	"microtubule-associated protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138886.1.A1_at	A	A1TS	POPTR_0011s14180	POPTR_0011s14180 (11)	scaffold_11:16688868-16690614(+) (11)	NA	NA	NA	AT5G54920.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g53450.1	expressed protein	Medtr3g068300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138893.1.A1_at	A	A1TS	POPTR_0002s14050	POPTR_0002s14050 (10)	scaffold_2:10406049-10406676(-) (10)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	AC202489_30.1	RNA-binding region RNP-1 (RNA recognition motif) AC202489.10 129376-123921 E EGN_Mt090430 200	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.1389.1.S1_at	A	A1TS	POPTR_0009s02660	POPTR_0009s02660 (11)	scaffold_9:3425065-3425291(+) (11)	NA	P27164	Calmodulin-related protein	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138918.1.A1_at	A	A1TS	POPTR_0006s10420	POPTR_0006s10420 (11)	scaffold_6:7794853-7794935(-) (11)	NA	P70168	Importin subunit beta-1	AT3G08947.1	ARM repeat superfamily protein 	LOC_Os05g28510.4	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.13893.1.S1_at	A	A1TS	POPTR_0012s14310	POPTR_0012s14310 (10)	scaffold_12:14241182-14241666(-) (10)	NA	NA	NA	AT5G51670.1	Protein of unknown function (DUF668) 	LOC_Os03g64130.1	"avr9/Cf-9 rapidly elicited protein, putative, expressed"	Medtr7g034900.1	Protein of unknown function DUF668 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138948.1.A1_at	A	A1TS	POPTR_0005s25440	POPTR_0005s25440 (11)	scaffold_5:23697173-23697448(-) (11)	NA	P43297	Cysteine proteinase RD21a	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os05g43230.1	"oryzain alpha chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.138988.1.S1_at	A	A1TS	POPTR_0016s12480	POPTR_0016s12480 (9)	scaffold_16:11939821-11940159(-) (9)	NA	NA	NA	AT5G01370.1	ALC-interacting protein 1 	NA	NA	Medtr4g013080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138990.1.S1_s_at	A	A1TS	POPTR_0012s05000	POPTR_0012s05000 (11)	scaffold_12:4499566-4499820(-) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT1G73760.1	RING/U-box superfamily protein 	LOC_Os01g49770.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g096250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.138996.1.S1_at	A	A1TS	POPTR_0002s13070	POPTR_0002s13070 (11)	scaffold_2:9726756-9727467(+) (11)	NA	Q9SZA7	Probable disease resistance protein At4g33300	AT4G33300.2	ADR1-like 1 	LOC_Os12g39620.1	"disease resistance protein, putative, expressed"	Medtr1g025080.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.139.1.S1_at	A	A1TS	POPTR_0019s05220	POPTR_0019s05220 (10)	scaffold_19:5488476-5488624(+) (10)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr7g102590.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.139005.1.S1_at	A	A1TS	POPTR_0010s23650	POPTR_0010s23650 (11)	scaffold_10:20172583-20173439(+) (11)	NA	Q84K00	NAC domain-containing protein 78	AT5G04410.1	NAC domain containing protein 2 	LOC_Os05g35170.2	"no apical meristem protein, putative, expressed"	Medtr8g073410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.139026.1.S1_s_at	A	A1TS	POPTR_0008s10010	POPTR_0008s10010 (11)	scaffold_8:6241939-6243125(+) (11)	NA	Q9LNF4	Probable protein phosphatase 2C 13	AT1G48040.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037290.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139026.2.S1_at	A	A1TS	POPTR_0010s16130	POPTR_0010s16130 (11)	scaffold_10:15155021-15156170(-) (11)	NA	Q9LNF4	Probable protein phosphatase 2C 13	AT1G48040.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037290.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139032.1.S1_at	A	A1TS	POPTR_0010s10010	POPTR_0010s10010 (11)	scaffold_10:10613121-10614117(+) (11)	NA	Q94AZ2	Sugar transport protein 13	AT5G26340.1	Major facilitator superfamily protein 	LOC_Os03g11900.1	"transporter family protein, putative, expressed"	Medtr5g006160.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.139048.1.S1_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (11)	scaffold_14:13871227-13871286(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.139048.1.S1_s_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (11)	scaffold_14:13871285-13872424(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
PtpAffx.139060.1.S1_at	A	A1TS	POPTR_0007s12520	POPTR_0007s12520 (11)	scaffold_7:12812581-12813682(-) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os03g10140.1	"ZOS3-04 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.139062.1.S1_at	A	A1TS	POPTR_0010s04470	POPTR_0010s04470 (11)	scaffold_10:5560419-5560845(+) (11)	NA	P0C5E2	Probable serine/threonine-protein kinase At1g18390	AT1G69910.1	Protein kinase superfamily protein 	LOC_Os03g58750.1	"protein kinase domain containing protein, expressed"	Medtr5g038490.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.139063.1.S1_at	A	A1TS	POPTR_0002s23760	POPTR_0002s23760 (9)	scaffold_2:21265302-21265762(+) (9)	POPTR_0002s23770 (8)	Q9LR44	Indole-3-acetate beta-glucosyltransferase 1	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139086.1.S1_at	A	A1TS	POPTR_0014s01470	POPTR_0014s01470 (11)	scaffold_14:1410314-1410614(-) (11)	NA	Q9FZI8	Lecithin-cholesterol acyltransferase-like 1	AT1G27480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g52010.1	"lecithin cholesterol acyltransferase, putative, expressed"	Medtr2g091450.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
PtpAffx.139089.1.S1_at	A	A1TS	POPTR_0018s09450	POPTR_0018s09450 (11)	scaffold_18:10344574-10344932(-) (11)	NA	NA	NA	AT4G15450.1	Senescence/dehydration-associated protein-related 	LOC_Os01g52480.1	"senescence-associated protein, putative, expressed"	Medtr4g159850.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139092.1.S1_at	A	A1TS	POPTR_0010s12930	POPTR_0010s12930 (11)	scaffold_10:12851144-12851748(-) (11)	NA	Q9XI60	Lipid phosphate phosphatase 2	AT1G15080.1	lipid phosphate phosphatase 2 	LOC_Os08g27040.1	"lipid phosphatase protein, putative, expressed"	Medtr7g093870.1	"Phosphoesterase, PA-phosphatase related "	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.1391.1.S1_at	A	A1TS	POPTR_0006s09730	POPTR_0006s09730 (9)	scaffold_6:7162559-7162645(+) (9)	NA	NA	NA	AT3G09090.1	defective in exine formation protein (DEX1) 	LOC_Os03g61050.1	"FG-GAP repeat-containing protein, putative, expressed"	Medtr4g012280.1	"DEX1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13910.1.S1_a_at	A	A1TS	POPTR_0006s10750	POPTR_0006s10750 (11)	scaffold_6:8107911-8108664(-) (11)	NA	NA	NA	AT2G40435.1	BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1); Has 289 Blast hits to 289 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 289; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g47960.1	"basic helix-loop-helix domain containing protein, expressed"	Medtr5g091250.1	"transcription regulator, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139103.1.S1_s_at	A	A1TS	POPTR_0010s15450	POPTR_0010s15450 (11)	scaffold_10:14687668-14689207(-) (11)	NA	Q94A16	"Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial"	AT3G66654.2	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g29390.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.139103.2.S1_at	A	A1TS	POPTR_0008s10530	POPTR_0008s10530 (11)	scaffold_8:6601789-6603090(+) (11)	NA	Q94A16	"Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial"	AT3G66654.2	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g29390.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.139103.2.S1_s_at	A	A2TS	POPTR_0008s10530	POPTR_0008s10530 (11)//POPTR_0010s15450 (11)	scaffold_10:14686598-14687084(-) (11)//scaffold_8:6602431-6602867(+) (11)	NA	Q94A16	"Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial"	AT3G66654.2	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g29390.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.139109.1.S1_s_at	A	A1TS	POPTR_0001s23460	POPTR_0001s23460 (11)	scaffold_1:22810266-22812451(-) (9)//scaffold_1:22867772-22869861(-) (11)	POPTR_0001s23450 (7)	A2SY66	Vicianin hydrolase (Fragment)	AT2G44480.1	beta glucosidase 17 	LOC_Os04g39880.1	"Os4bglu12 - beta-glucosidase, exo-beta-glucanase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.139113.1.S1_at	A	A1TS	POPTR_0003s04970	POPTR_0003s04970 (11)	scaffold_3:6077060-6078754(+) (11)	NA	NA	NA	AT3G16200.1	unknown protein; Has 97 Blast hits to 97 proteins in 15 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). 	LOC_Os01g31220.1	expressed protein	Medtr2g122550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13912.1.S1_at	A	A1TS	POPTR_0003s10720	POPTR_0003s10720 (11)	scaffold_3:11629539-11630115(+) (11)	NA	Q9WZ25	3-isopropylmalate dehydratase small subunit 2	AT2G43090.1	Aconitase/3-isopropylmalate dehydratase protein 	LOC_Os02g43830.2	"3-isopropylmalate dehydratase small subunit 2, putative, expressed"	NA	NA	GO:0008152|metabolic process	NA	NA
PtpAffx.139136.1.S1_at	A	A1TS	POPTR_0007s04120	POPTR_0007s04120 (11)	scaffold_7:2484008-2484536(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G20015.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58070.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139139.1.S1_at	A	A1TS	POPTR_0001s17360	POPTR_0001s17360 (10)	scaffold_1:14162375-14164052(-) (10)	NA	Q9WTL7	Acyl-protein thioesterase 2	AT3G15650.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g07960.3	"acyl-protein thioesterase, putative, expressed"	Medtr2g125780.1	Phospholipase/Carboxylesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.13915.1.S1_at	A	A1TS	POPTR_0014s01530	POPTR_0014s01530 (11)	scaffold_14:1454384-1455271(-) (11)	NA	NA	NA	AT4G33800.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr5g005430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139151.1.S1_at	A	A1TS	POPTR_0009s01240	POPTR_0009s01240 (10)	scaffold_9:1450776-1451109(-) (10)	NA	Q8GW72	Alpha-L-fucosidase 1	AT2G28100.1	alpha-L-fucosidase 1 	LOC_Os04g47280.1	"ATFUC1, putative, expressed"	Medtr2g113690.1	"Glycoside hydrolase, family 29 (alpha-L-fucosidase); Galactose-binding like "	GO:0005975|carbohydrate metabolic process	GO:0004560|alpha-L-fucosidase activity	NA
PtpAffx.139160.1.S1_at	A	A1TS	POPTR_0007s10820	POPTR_0007s10820 (11)	scaffold_7:10986755-10987291(-) (11)	NA	NA	NA	AT4G34090.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g01920.1	expressed protein	Medtr7g127140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139165.1.S1_at	A	A2TS	POPTR_0005s18730	POPTR_0005s18730 (11)//POPTR_0007s03230 (11)	scaffold_5:17003313-17003555(+) (11)//scaffold_7:1846451-1846693(+) (11)	NA	P93147	Isoflavone 2'-hydroxylase	AT4G37370.1	"cytochrome P450, family 81, subfamily D, polypeptide 8 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.139172.2.S1_s_at	A	A1TS	POPTR_0019s12550	POPTR_0019s12550 (11)	scaffold_19:13600742-13602375(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G59690.1	IQ-domain 13 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13918.1.S1_at	A	A1TS	POPTR_0004s19470	POPTR_0004s19470 (11)	scaffold_4:19310305-19311159(+) (11)	NA	Q02921	Early nodulin-93	AT5G25940.1	early nodulin-related 	LOC_Os06g05020.1	"early nodulin 93 ENOD93 protein, putative, expressed"	Medtr8g119590.1	Early nodulin 93 ENOD93 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139198.1.A1_at	A	A1TS	POPTR_0010s10400	POPTR_0010s10400 (10)	scaffold_10:10917125-10918989(-) (10)	NA	Q9CYW4	Haloacid dehalogenase-like hydrolase domain-containing protein 3	AT1G14310.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g07300.2	"haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed"	Medtr5g040970.1	"HAD-superfamily subfamily IA hydrolase, REG-2-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.139201.1.A1_at	A	A1MS	POPTR_0008s16580	POPTR_0008s16580 (11)	scaffold_8:11126943-11127257(-) (11)	NA	P93823	RING-H2 finger protein ATL1	AT1G04360.1	RING/U-box superfamily protein 	LOC_Os02g57460.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr1g042550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139236.1.S1_at	A	A1MS	POPTR_0008s08720	POPTR_0008s08720 (10)	scaffold_8:5379629-5380162(-) (10)	NA	Q9SAK5	Myb family transcription factor APL	AT1G69580.2	Homeodomain-like superfamily protein 	LOC_Os03g20900.1	"Myb transcription factor, putative, expressed"	Medtr4g111390.1	"Peptidase M22, glycoprotease; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13928.1.S1_at	A	A1TS	POPTR_0006s05850	POPTR_0006s05850 (11)	scaffold_6:4118417-4120592(+) (11)	NA	Q9FG23	CDK5RAP3-like protein	AT5G06830.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 365 Blast hits to 359 proteins in 109 species: Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 	LOC_Os06g21560.1	"CDK5RAP3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13928.2.A1_at	A	A1MS	POPTR_0006s05850	POPTR_0006s05850 (11)	scaffold_6:4118113-4118293(+) (11)	NA	Q9FG23	CDK5RAP3-like protein	AT5G06830.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491); Has 365 Blast hits to 359 proteins in 109 species: Archae - 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants - 47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). 	LOC_Os06g21560.1	"CDK5RAP3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13929.1.A1_at	A	A1TS	POPTR_0001s26430	POPTR_0001s26430 (11)	scaffold_1:25465624-25465923(-) (11)	NA	Q38873	Calcium-dependent protein kinase 7	AT5G12480.1	calmodulin-domain protein kinase 7 	LOC_Os07g38120.1	"CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g096420.1	"Calcium-dependent protein kinase 2, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.139301.1.S1_s_at	A	A1TS	POPTR_0005s20600	POPTR_0005s20600 (11)	scaffold_5:19637522-19639665(+) (11)	POPTR_0002s07770 (7)	Q8CFV9	Riboflavin kinase	AT4G21470.1	riboflavin kinase/FMN hydrolase 	LOC_Os10g32730.1	"haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed"	Medtr4g125160.1	"HAD-superfamily hydrolase subfamily IA, variant 3; Epoxide hydrolase N-terminal domain-like phosphatase "	GO:0009231|riboflavin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0008531|riboflavin kinase activity	NA
PtpAffx.139312.1.S1_at	A	A1TS	POPTR_0003s14370	POPTR_0003s14370 (9)	scaffold_3:14452037-14452982(-) (9)	NA	Q54ML1	Glutamine-dependent NAD(+) synthetase	AT1G55090.1	carbon-nitrogen hydrolase family protein 	LOC_Os07g07260.1	"glutamine-dependent NAD, putative, expressed"	NA	NA	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.139313.1.S1_at	A	A1TS	POPTR_0001s21160	POPTR_0001s21160 (11)	scaffold_1:19536540-19536983(+) (11)	NA	NA	NA	AT1G15760.1	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os04g55120.1	"jp18, putative, expressed"	Medtr4g006090.1	Sterile alpha motif homology 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139327.1.S1_at	A	A1TS	POPTR_0016s13390	POPTR_0016s13390 (10)	scaffold_16:12579985-12581856(-) (10)	NA	NA	NA	AT3G08780.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; Has 129 Blast hits to 129 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 96; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). "	LOC_Os07g35600.2	expressed protein	Medtr4g011620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139342.1.S1_at	A	A1TS	POPTR_0014s12150	POPTR_0014s12150 (11)	scaffold_14:8979210-8979944(-) (11)	NA	O52177	GTP pyrophosphokinase	AT4G02260.2	RELA/SPOT homolog 1 	LOC_Os03g22160.1	"relA-SpoT like protein RSH1, putative, expressed"	Medtr8g025050.2	"Metal-dependent phosphohydrolase, HD subdomain "	GO:0015969|guanosine tetraphosphate metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.139389.1.S1_at	A	A1TS	POPTR_0005s17320	POPTR_0005s17320 (11)	scaffold_5:14634726-14635152(-) (11)	NA	NA	NA	AT1G78310.1	VQ motif-containing protein 	NA	NA	Medtr3g150400.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139435.1.S1_at	A	A1MS	POPTR_0008s19470	POPTR_0008s19470 (10)	scaffold_8:13412250-13415949(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139439.1.S1_at	A	A1TS	POPTR_0014s07270	POPTR_0014s07270 (11)	scaffold_14:5492808-5495539(-) (11)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.139442.1.S1_s_at	A	A1TS	POPTR_0012s14190	POPTR_0012s14190 (11)	scaffold_12:14166053-14167284(-) (11)	NA	Q39189	DEAD-box ATP-dependent RNA helicase 7	AT5G62190.1	DEAD box RNA helicase (PRH75) 	LOC_Os09g34910.1	"DEAD-box ATP-dependent RNA helicase 7, putative, expressed"	Medtr1g130350.1	"Helicase, C-terminal; GUCT; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005634|nucleus
PtpAffx.139448.1.S1_a_at	A	A1TS	POPTR_0015s13790	POPTR_0015s13790 (11)	scaffold_15:13574712-13575043(+) (11)	NA	A5A7I7	Calcium-dependent protein kinase 4	AT1G12580.1	phosphoenolpyruvate carboxylase-related kinase 1 	LOC_Os06g03682.1	"calcium-dependent protein kinase isoform AK1, putative, expressed"	Medtr1g129530.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.139449.1.S1_s_at	A	A1TS	POPTR_0002s13010	POPTR_0002s13010 (11)	scaffold_2:9668088-9668786(-) (11)	NA	P34422	Dipeptidyl peptidase family member 6	AT5G36210.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g11180.1	"OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr3g068350.1	"Peptidase S9, prolyl oligopeptidase active site region "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.139453.1.S1_at	A	A1TS	POPTR_0006s14150	POPTR_0006s14150 (11)	scaffold_6:11456866-11457490(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os07g42380.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g132790.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.13946.1.A1_at	A	A1TS	POPTR_0017s07070	POPTR_0017s07070 (11)	scaffold_17:5497478-5498783(+) (11)	NA	NA	NA	AT4G33625.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 59 Blast hits to 59 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os07g02710.1	expressed protein	Medtr2g009650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13947.1.A1_s_at	A	A1TS	POPTR_0013s01950	POPTR_0013s01950 (11)	scaffold_13:1121875-1122360(-) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT3G05420.2	acyl-CoA binding protein 4 	LOC_Os03g61930.1	"ACBP4, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.139478.1.S1_at	A	A1TS	POPTR_0006s08210	POPTR_0006s08210 (10)	scaffold_6:5970716-5971549(-) (10)	NA	NA	NA	AT2G37480.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G53670.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os05g02260.2	expressed protein	Medtr7g118380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139482.1.S1_at	A	A1TS	POPTR_0001s08690	POPTR_0001s08690 (11)	scaffold_1:6640008-6641168(-) (11)	NA	Q5R831	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT4G23010.1	UDP-galactose transporter 2 	LOC_Os03g02670.2	"transporter family protein, putative, expressed"	Medtr7g083930.2	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139484.1.S1_at	A	A1TS	POPTR_0007s14900	POPTR_0007s14900 (10)	scaffold_7:14593732-14594308(+) (10)	POPTR_0014s01000 (8)	A4XP61	Amino-acid acetyltransferase	AT4G37670.2	N-acetyl-l-glutamate synthase 2 	LOC_Os03g31690.1	"GCN5-related N-acetyltransferase, putative, expressed"	Medtr5g015470.1	Amino-acid N-acetyltransferase (ArgA) 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.139489.1.S1_s_at	A	A1TS	POPTR_0001s26960	POPTR_0001s26960 (11)	scaffold_1:25935994-25936446(-) (11)	NA	NA	NA	AT5G12470.1	Protein of unknown function (DUF3411) 	LOC_Os05g32230.1	expressed protein	Medtr4g104500.1	"chloroplast lumenal protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139512.1.S1_at	A	A1TS	POPTR_0009s04540	POPTR_0009s04540 (9)	scaffold_9:4870663-4872468(+) (9)	NA	Q9ZW34	Cytosolic enolase 3	AT2G29560.1	cytosolic enolase 	LOC_Os03g15950.1	"enolase, putative, expressed"	Medtr5g104640.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
PtpAffx.139515.1.S1_at	A	A1TS	POPTR_0015s15740	POPTR_0015s15740 (10)	scaffold_15:14959765-14959989(+) (10)//scaffold_15:14965654-14965878(+) (10)	NA	NA	NA	AT4G19670.2	RING/U-box superfamily protein 	LOC_Os12g43560.1	"zinc finger, putative, expressed"	Medtr2g034440.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139528.1.S1_at	A	A1TS	POPTR_0016s14670	POPTR_0016s14670 (11)	scaffold_16:13826328-13827229(-) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT3G08570.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02620.1	"BTBN21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr7g080500.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.139528.2.A1_at	A	A1TA	POPTR_0016s14670	POPTR_0016s14670 (11)	scaffold_16:13826056-13826420(+) (11)	NA	Q9FKB6	BTB/POZ domain-containing protein At5g48800	AT3G08570.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02620.1	"BTBN21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr7g080500.1	BTB/POZ; NPH3 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
PtpAffx.139530.1.S1_s_at	A	A1TS	POPTR_0002s00980	POPTR_0002s00980 (11)	scaffold_2:481732-482337(-) (11)	NA	Q5QMM3	WUSCHEL-related homeobox 8	AT4G35550.1	WUSCHEL related homeobox 13 	LOC_Os01g60270.2	"homeobox domain containing protein, expressed"	Medtr7g025190.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.139530.2.S1_s_at	A	A2TS	POPTR_0002s00980	POPTR_0002s00980 (11)//POPTR_0005s27410 (11)	scaffold_2:482430-482537(-) (11)//scaffold_5:25097855-25097962(+) (11)	NA	Q5QMM3	WUSCHEL-related homeobox 8	AT4G35550.1	WUSCHEL related homeobox 13 	LOC_Os01g60270.2	"homeobox domain containing protein, expressed"	Medtr7g025190.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.139544.1.S1_at	A	A1TS	POPTR_0004s04310	POPTR_0004s04310 (10)	scaffold_4:3086464-3087536(-) (10)	NA	NA	NA	AT4G21610.1	lsd one like 2 	LOC_Os01g42710.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g102780.1	"Zinc finger, LSD1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139547.1.S1_at	A	A1TS	POPTR_0009s11450	POPTR_0009s11450 (9)	scaffold_9:9511185-9511867(-) (9)	NA	Q8H124	"Uncharacterized protein At2g34460, chloroplastic"	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g01044.1	"isoflavone reductase, putative, expressed"	Medtr8g121780.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139572.1.S1_s_at	A	A1TS	POPTR_0002s05580	POPTR_0002s05580 (11)	scaffold_2:3652183-3652696(-) (11)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33410.1	"xylanase inhibitor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139579.1.S1_at	A	A1TS	POPTR_0006s06390	POPTR_0006s06390 (11)	scaffold_6:4554399-4558287(+) (11)	NA	Q9LHS0	Putative clathrin assembly protein At5g35200	AT5G35200.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os06g07830.1	"ANTH/ENTH domain containing protein, putative, expressed"	Medtr8g121480.1	ENTH/VHS; ANTH; 	NA	GO:0005543|phospholipid binding	NA
PtpAffx.139596.1.S1_at	A	A1TS	POPTR_0018s09290	POPTR_0018s09290 (10)	scaffold_18:10174090-10174609(+) (10)	NA	NA	NA	AT2G20010.2	Protein of unknown function (DUF810) 	LOC_Os09g17760.1	expressed protein	Medtr1g143550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139618.1.S1_at	A	A2TS	POPTR_0001s34620	POPTR_0001s34620 (11)//POPTR_0017s10910 (11)	scaffold_1:32856607-32856641(+) (11)//scaffold_17:10500224-10500258(+) (11)	NA	Q9SSA5	"Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic"	AT3G01480.1	cyclophilin 38 	LOC_Os08g29370.1	"peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.139618.1.S1_s_at	A	A1TS	POPTR_0001s34620	POPTR_0001s34620 (10)	scaffold_1:32856637-32858438(+) (10)	POPTR_0017s10910 (6)	Q9SSA5	"Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic"	AT3G01480.1	cyclophilin 38 	LOC_Os08g29370.1	"peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.139646.1.S1_s_at	A	A1TS	POPTR_0011s14840	POPTR_0011s14840 (11)	scaffold_11:17093775-17095824(+) (11)	NA	Q9FN02	Serine/threonine-protein phosphatase 7	AT5G63870.1	serine/threonine phosphatase 7 	LOC_Os08g40200.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr8g087100.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.139697.1.S1_s_at	A	A1TS	POPTR_0003s02540	POPTR_0003s02540 (11)	scaffold_3:2642563-2643979(+) (11)	NA	A5UUN1	Formamidopyrimidine-DNA glycosylase	AT1G52500.2	MUTM homolog-1 	LOC_Os08g21330.1	"formamidopyrimidine-DNA glycosylase, putative, expressed"	Medtr2g126800.1	"Formamidopyrimidine-DNA glycolase; Formamidopyrimidine-DNA glycosylase, catalytic "	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0016799|""hydrolase activity, hydrolyzing N-glycosyl compounds""||GO:0003906|DNA-(apurinic or apyrimidinic site) lyase activity||GO:0003684|damaged DNA binding||GO:0008270|zinc ion binding"	NA
PtpAffx.139698.1.A1_at	A	A1TS	POPTR_0004s07640	POPTR_0004s07640 (11)	scaffold_4:6275339-6275690(+) (11)	NA	Q9FGV1	Auxin response factor 8	AT5G37020.1	auxin response factor 8 	LOC_Os04g57610.1	"auxin response factor, putative, expressed"	Medtr5g084140.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.139716.1.S1_at	A	A1TS	POPTR_0007s13650	POPTR_0007s13650 (11)	scaffold_7:13675296-13676612(-) (11)	NA	Q70E96	Aldehyde dehydrogenase family 3 member F1	AT4G36250.1	aldehyde dehydrogenase 3F1 	LOC_Os04g45720.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g090560.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.139725.1.S1_s_at	A	A1TS	POPTR_0014s09780	POPTR_0014s09780 (11)	scaffold_14:7293343-7293718(-) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G46620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g02330.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g123370.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.139752.1.S1_at	A	A1TS	POPTR_0010s25900	POPTR_0010s25900 (11)	scaffold_10:21346689-21353862(-) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT1G16860.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139754.1.S1_at	A	A1TS	POPTR_0012s07460	POPTR_0012s07460 (11)	scaffold_12:8377084-8377806(+) (11)	NA	NA	NA	AT3G47850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; Has 57 Blast hits to 57 proteins in 32 species: Archae - 0; Bacteria - 5; Metazoa - 12; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). 	LOC_Os05g13390.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13976.1.A1_at	A	A1TS	POPTR_0001s15110	POPTR_0001s15110 (11)	scaffold_1:11969386-11970573(+) (11)	NA	Q13395	Probable methyltransferase TARBP1	AT4G17610.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os03g01110.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.13977.1.S1_at	A	A1TS	POPTR_0013s05400	POPTR_0013s05400 (11)	scaffold_13:3856588-3856748(-) (11)	NA	NA	NA	AT5G56540.1	arabinogalactan protein 14 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.13977.1.S1_x_at	A	A1TS	POPTR_0013s05400	POPTR_0013s05400 (11)	scaffold_13:3856580-3856769(-) (11)	NA	NA	NA	AT5G56540.1	arabinogalactan protein 14 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1398.12.A1_a_at	A	A1TS	POPTR_0002s17750	POPTR_0002s17750 (11)	scaffold_2:13590859-13591321(+) (11)	NA	O49687	Transcription factor MYC4	AT4G17880.1	Basic helix-loop-helix (bHLH) DNA-binding family protein 	LOC_Os10g42430.1	"transcription factor MYC7E, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.1398.2.A1_a_at	A	A1TS	POPTR_0008s11310	POPTR_0008s11310 (11)	scaffold_8:7159495-7159813(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1398.4.A1_a_at	A	A1TS	POPTR_0001s08910	POPTR_0001s08910 (11)	scaffold_1:6810726-6811093(+) (11)	NA	Q8L4D8	Protein IQ-DOMAIN 31	AT4G23060.1	IQ-domain 22 	LOC_Os04g48160.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g129280.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139802.1.S1_at	A	A1TS	POPTR_0005s26230	POPTR_0005s26230 (9)	scaffold_5:24297898-24298215(+) (11)	NA	NA	NA	AT4G24175.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g24410.1	"kinesin heavy chain isolog, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139845.1.S1_at	A	A1TS	POPTR_0009s05150	POPTR_0009s05150 (11)	scaffold_9:5310467-5311310(+) (11)	NA	Q9LUZ4	Zinc finger CCCH domain-containing protein 66	AT5G58620.1	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g079420.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.1399.1.S1_s_at	A	A1TS	POPTR_0006s00460	POPTR_0006s00460 (11)	scaffold_6:220346-220788(-) (11)	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30210.1	expressed protein	Medtr2g033120.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139904.1.S1_at	A	A1TS	POPTR_0008s02540	POPTR_0008s02540 (9)	scaffold_8:1243886-1244373(+) (9)	NA	NA	NA	AT3G52240.1	unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). 	LOC_Os05g37340.1	expressed protein	Medtr1g116860.1	Pectinesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139944.1.A1_at	A	A1TS	POPTR_0016s02900	POPTR_0016s02900 (11)	scaffold_16:1441866-1442237(+) (11)	NA	Q62383	Transcription elongation factor SPT6	AT1G65440.2	global transcription factor group B1 	LOC_Os05g41510.1	"SH2 motif, putative, expressed"	Medtr7g105590.1	"Alcohol dehydrogenase, zinc-containing; RNA binding S1; Resolvase, RNase H-like fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139950.1.A1_at	A	A1TS	POPTR_0001s45510	POPTR_0001s45510 (11)	scaffold_1:46024398-46024710(+) (11)	NA	Q9MAP3	"50S ribosomal protein L11, chloroplastic"	AT1G32990.1	plastid ribosomal protein l11 	LOC_Os03g03020.1	"L11 domain containing ribosomal protein, putative, expressed"	Medtr3g109450.1	Ribosomal protein L11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.139964.1.A1_at	A	A1TS	POPTR_0010s13020	POPTR_0010s13020 (11)	scaffold_10:12930671-12931152(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.139993.1.A1_at	A	A1TS	POPTR_0001s30940	POPTR_0001s30940 (11)	scaffold_1:29361890-29362315(-) (11)	NA	Q8T9S7	"Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN"	AT3G19420.1	PTEN 2 	LOC_Os12g21890.1	"PTEN, putative, expressed"	Medtr5g016480.1	"Dual specificity protein phosphatase; C2 calcium/lipid-binding region, CaLB; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14.1.S1_at	A	A1MS	POPTR_0001s37280	POPTR_0001s37280 (10)	scaffold_1:36265264-36265793(+) (10)	NA	NA	NA	AT5G55580.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g39430.1	"mTERF family protein, expressed"	Medtr5g102090.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140.1.S1_at	A	A1TS	POPTR_0015s09990	POPTR_0015s09990 (11)	scaffold_15:11050658-11053489(-) (11)	NA	P95649	Protein CbbY	AT3G48420.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os03g36750.1	"cbbY, putative, expressed"	AC235753_15.1	"HAD-superfamily hydrolase subfamily IA, variant 3 AC235753.1 88087-84841 F EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.1400.1.S1_at	A	A1TS	POPTR_0019s11670	POPTR_0019s11670 (11)	scaffold_19:12920113-12920544(+) (11)	NA	Q3E7Q9	Probable glycosyltransferase At5g25310	AT1G34270.1	Exostosin family protein 	LOC_Os04g57510.1	"exostosin family domain containing protein, expressed"	Medtr4g107310.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.140006.1.A1_at	A	A1TS	POPTR_0004s03350	POPTR_0004s03350 (11)	scaffold_4:2287591-2288267(+) (11)	NA	Q8VYN2	Vesicle-associated protein 4-2	AT4G21450.1	PapD-like superfamily protein 	LOC_Os08g04620.1	"MSP domain containing protein, putative, expressed"	Medtr4g124720.1	Major sperm protein 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.140013.1.A1_at	A	A1TS	POPTR_0001s27400	POPTR_0001s27400 (11)	scaffold_1:26296825-26297250(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14002.1.S1_at	A	A1TS	POPTR_0003s02980	POPTR_0003s02980 (10)	scaffold_3:3201539-3202012(-) (10)	NA	Q9C889	PRA1 family protein F2	AT1G55190.1	PRA1 (Prenylated rab acceptor) family protein 	LOC_Os05g11120.1	"prenylated rab acceptor, putative, expressed"	Medtr2g121490.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140042.1.A1_a_at	A	A1MS	POPTR_0006s24530	POPTR_0006s24530 (11)	scaffold_6:23116472-23116569(+) (11)//scaffold_6:23116771-23117157(+) (11)	NA	Q66GS2	"Probable beta-1,3-galactosyltransferase 12"	AT2G26100.1	Galactosyltransferase family protein 	LOC_Os06g06280.2	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.140042.1.A1_s_at	A	A2MS	POPTR_0006s24530	POPTR_0006s24530 (11)//POPTR_0018s05200 (10)	scaffold_18:4705787-4706094(+) (10)//scaffold_18:4705932-4706111(+) (9)//scaffold_18:4706073-4706263(+) (9)//scaffold_18:4706225-4706402(+) (9)//scaffold_18:4706367-4706536(+) (9)//scaffold_6:23115594-23116512(+) (11)//scaffold_6:23115777-23116811(+) (11)//scaffold_6:23115919-23117113(+) (11)//scaffold_6:23116062-23116828(+) (9)//scaffold_6:23116205-23116986(+) (9)//scaffold_6:23116348-23117130(+) (9)//scaffold_6:23116491-23117285(+) (9)	NA	Q66GS2	"Probable beta-1,3-galactosyltransferase 12"	AT2G26100.1	Galactosyltransferase family protein 	LOC_Os06g06280.2	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.140057.1.A1_at	A	A1TS	POPTR_0006s08440	POPTR_0006s08440 (9)	scaffold_6:6146118-6146479(+) (9)	NA	Q9LZ56	Dof zinc finger protein DOF5.1	AT5G02460.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os03g60630.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.140062.1.A1_s_at	A	A1TS	POPTR_0002s00960	POPTR_0002s00960 (11)	scaffold_2:461338-461416(-) (11)//scaffold_2:9083592-9083670(+) (11)//scaffold_2:9106005-9106083(+) (11)//scaffold_2:9115487-9115530(+) (9)	NA	Q9HGL2	Uncharacterized calcium-binding protein C800.10c	AT1G20760.1	Calcium-binding EF hand family protein 	LOC_Os03g03830.1	"EF hand family protein, putative, expressed"	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140068.1.S1_at	A	A1TS	POPTR_0006s26750	POPTR_0006s26750 (11)	scaffold_6:24869846-24870062(+) (11)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.2	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.140068.2.S1_at	A	A1TS	POPTR_0018s01490	POPTR_0018s01490 (10)	scaffold_18:1421164-1421814(+) (10)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.2	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.140074.1.A1_at	A	A1TS	POPTR_0016s12600	POPTR_0016s12600 (10)	scaffold_16:12005140-12006013(-) (10)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr1g111720.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140080.1.A1_at	A	A1TS	POPTR_0001s30420	POPTR_0001s30420 (11)	scaffold_1:28889572-28890517(+) (11)	NA	Q5SSZ7	Zinc/RING finger protein 3	AT1G49850.1	RING/U-box superfamily protein 	LOC_Os03g10890.1	"zinc finger, C3HC4 type domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140097.1.A1_a_at	A	A2TS	POPTR_0004s01340	POPTR_0021s00590 (11)//POPTR_0004s01340 (11)	scaffold_21:275123-276385(-) (11)//scaffold_4:725744-726409(-) (11)	NA	Q9SA96	"Arogenate dehydratase/prephenate dehydratase 1, chloroplastic"	AT1G11790.1	arogenate dehydratase 1 	LOC_Os03g17730.1	"P-protein, putative, expressed"	Medtr8g146930.1	Prephenate dehydratase with ACT region 	GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0004664|prephenate dehydratase activity	NA
PtpAffx.140101.1.S1_at	A	A1TS	POPTR_0006s12020	POPTR_0006s12020 (11)	scaffold_6:9192044-9193441(-) (11)	NA	Q9CS00	Uncharacterized protein C19orf29 homolog	AT1G03910.1	"EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2); Has 11711 Blast hits to 7382 proteins in 452 species: Archae - 31; Bacteria - 352; Metazoa - 6006; Fungi - 1138; Plants - 599; Viruses - 33; Other Eukaryotes - 3552 (source: NCBI BLink). "	LOC_Os03g58590.1	expressed protein	Medtr7g124550.1	"Uncharacterized protein C19orf29 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140123.1.S1_s_at	A	A1TS	POPTR_0008s02510	POPTR_0008s02510 (11)	scaffold_8:1228983-1230766(-) (11)	NA	Q7M3S9	RING finger protein B	AT2G36360.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os03g61950.1	"kelch motif family protein, putative, expressed"	Medtr1g116960.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140123.2.A1_s_at	A	A1TS	POPTR_0008s02510	POPTR_0008s02510 (11)	scaffold_8:1227862-1228774(-) (11)	NA	Q7M3S9	RING finger protein B	AT2G36360.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os03g61950.1	"kelch motif family protein, putative, expressed"	Medtr1g116960.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140138.1.A1_s_at	A	A1TS	POPTR_0008s09970	POPTR_0008s09970 (11)	scaffold_8:6179539-6180172(+) (11)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140138.2.A1_at	A	A1TA	POPTR_0008s09980	POPTR_0008s09980 (9)	scaffold_8:6180421-6180757(+) (10)	NA	NA	NA	AT3G17300.1	unknown protein; Has 48 Blast hits to 48 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g37850.1	expressed protein	Medtr2g037030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14014.1.A1_at	A	A1TS	POPTR_0001s13420	POPTR_0001s13420 (11)	scaffold_1:10503566-10503919(-) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G13160.1	Protein kinase superfamily protein 	LOC_Os02g30900.1	"protein kinase domain containing protein, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14014.2.A1_at	A	A1TS	POPTR_0003s16530	POPTR_0003s16530 (10)	scaffold_3:16111063-16111390(-) (10)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G13160.1	Protein kinase superfamily protein 	LOC_Os02g30900.1	"protein kinase domain containing protein, expressed"	Medtr2g025100.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.140158.1.A1_at	A	A1TS	POPTR_0005s19250	POPTR_0005s19250 (11)	scaffold_5:17968545-17969029(-) (11)	NA	NA	NA	AT2G22720.2	SPT2 chromatin protein 	LOC_Os11g19130.1	expressed protein	Medtr5g032140.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140164.2.A1_a_at	A	A1TS	POPTR_0008s17840	POPTR_0008s17840 (10)	scaffold_8:11975124-11975516(-) (10)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.140167.1.A1_at	A	A1TS	POPTR_0010s16590	POPTR_0010s16590 (11)	scaffold_10:15503916-15504081(-) (11)	NA	Q9LMX4	Probable inactive purple acid phosphatase 1	AT1G13750.1	Purple acid phosphatases superfamily protein 	LOC_Os12g38750.2	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g073720.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.140178.1.A1_at	A	A1TS	POPTR_0006s15530	POPTR_0006s15530 (11)	scaffold_6:12975418-12975753(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140180.1.A1_at	A	A1TS	POPTR_0010s10000	POPTR_0010s10000 (10)	scaffold_10:10587500-10587816(-) (10)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140192.1.A1_at	A	A1TS	POPTR_0007s06560	POPTR_0007s06560 (11)	scaffold_7:4965584-4965698(+) (11)	POPTR_0006s17780 (6)	Q5QMN5	Probable RNA-dependent RNA polymerase 3	AT2G19930.1	RNA-dependent RNA polymerase family protein 	LOC_Os01g10140.2	"RNA-dependent RNA polymerase, putative, expressed"	Medtr8g125460.1	RNA dependent RNA polymerase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140200.1.A1_at	A	A1TS	POPTR_0001s36690	POPTR_0001s36690 (11)	scaffold_1:35387623-35388087(+) (11)	NA	Q12872	"Splicing factor, arginine/serine-rich 8"	AT5G55100.2	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein 	LOC_Os01g50320.1	"surp module family protein, putative, expressed"	Medtr5g100990.1	SWAP/Surp 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.140209.1.A1_s_at	A	A1TS	POPTR_0014s13730	POPTR_0014s13730 (11)	scaffold_14:10074849-10075512(-) (11)	NA	Q9USZ2	Uncharacterized protein C11G11.07	AT1G12930.1	ARM repeat superfamily protein 	LOC_Os11g34120.1	"exportin 1, putative"	Medtr7g099720.1	Exportin-1/Importin-beta-like 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.140217.4.A1_a_at	A	A1TS	POPTR_0002s19380	POPTR_0002s19380 (11)	scaffold_2:15345639-15346326(+) (11)	NA	O04425	Flowering time control protein FCA	AT2G47310.1	flowering time control protein-related / FCA gamma-related 	LOC_Os09g03610.4	"flowering time control protein FCA, putative, expressed"	Medtr8g136920.1	RNA-binding region RNP-1 (RNA recognition motif); WW/Rsp5/WWP 	NA	GO:0003676|nucleic acid binding||GO:0005515|protein binding	NA
PtpAffx.140221.1.A1_at	A	A1TS	POPTR_0016s13340	POPTR_0016s13340 (11)	scaffold_16:12537858-12539255(+) (11)	NA	NA	NA	AT5G01620.2	TRICHOME BIREFRINGENCE-LIKE 35 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr4g011830.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140227.1.A1_s_at	A	A1TS	POPTR_0014s00850	POPTR_0014s00850 (11)	scaffold_14:785755-786084(-) (11)	NA	NA	NA	AT3G49800.1	BSD domain-containing protein 	LOC_Os05g43520.2	"BSD, putative, expressed"	Medtr5g015300.1	BSD 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140238.1.A1_at	A	A1MS	POPTR_0008s07600	POPTR_0008s07600 (10)	scaffold_8:4654704-4659417(+) (10)	NA	Q93V61	Phospholipase A(1) LCAT3	AT3G03310.1	lecithin:cholesterol acyltransferase 3 	LOC_Os09g33820.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr7g090070.1	Lecithin:cholesterol acyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140246.1.A1_at	A	A1MS	POPTR_0008s04950	POPTR_0008s04950 (9)	scaffold_8:2884548-2885284(+) (9)	NA	Q9SFU0	Protein transport protein Sec24-like At3g07100	AT3G07100.1	Sec23/Sec24 protein transport family protein 	LOC_Os04g04020.1	"protein transport protein Sec24-like, putative, expressed"	AC235094_10.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region AC235094.1 49157-53293 E EGN_Mt090430 200"	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.14026.1.S1_s_at	A	A1TS	POPTR_0011s07040	POPTR_0011s07040 (10)	scaffold_11:7799094-7799287(+) (10)	NA	Q8LPK5	Cellulose synthase A catalytic subunit 8 [UDP-forming]	AT4G18780.1	cellulose synthase family protein 	LOC_Os01g54620.1	"CESA4 - cellulose synthase, expressed"	Medtr4g134990.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.14026.2.A1_s_at	A	A1TS	POPTR_0004s05830	POPTR_0004s05830 (11)	scaffold_4:4564481-4564594(-) (11)	NA	Q8LPK5	Cellulose synthase A catalytic subunit 8 [UDP-forming]	AT4G18780.1	cellulose synthase family protein 	LOC_Os01g54620.1	"CESA4 - cellulose synthase, expressed"	Medtr4g134990.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.140261.1.A1_at	A	A1TS	POPTR_0017s07820	POPTR_0017s07820 (10)	scaffold_17:6126755-6127194(+) (10)	NA	Q8RXN0	ABC transporter G family member 11	AT1G17840.1	white-brown complex homolog protein 11 	LOC_Os09g29660.1	"white-brown complex homolog protein 11, putative, expressed"	Medtr4g120750.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.14027.1.S1_at	A	A1TS	POPTR_0005s00790	POPTR_0005s00790 (10)	scaffold_5:363444-363904(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140285.1.A1_s_at	A	A1TS	POPTR_0155s00210	POPTR_0155s00210 (11)	scaffold_155:3247-3386(-) (11)//scaffold_271:4365-4504(-) (11)	NA	Q9SX68	"50S ribosomal protein L18, chloroplastic"	AT1G48350.1	Ribosomal L18p/L5e family protein 	LOC_Os03g61260.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr2g052360.1	Ribosomal protein L18 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.140294.1.A1_at	A	A1TS	POPTR_0329s00201	POPTR_0329s00201 (11)	scaffold_329:7827-8320(+) (11)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.1403.1.A1_s_at	A	A1MS	POPTR_0005s18510	POPTR_0005s18510 (10)	scaffold_5:16755497-16755919(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g016530.1	"Glycosyl transferase, family 43 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1403.3.S1_at	A	A1TS	POPTR_0010s11810	POPTR_0010s11810 (9)	scaffold_10:11958194-11961361(+) (10)	NA	Q93YP0	Ubiquitin-conjugating enzyme E2 variant 1A	AT1G23260.1	MMS ZWEI homologue 1 	LOC_Os03g50440.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g157390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140307.1.A1_at	A	A1TA	POPTR_0016s01090	POPTR_0016s01090 (10)	scaffold_16:418975-439844(+) (11)	NA	Q9LY77	"Putative calcium-transporting ATPase 12, plasma membrane-type"	AT3G63380.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.14032.1.S1_at	A	A1TS	POPTR_0001s41770	POPTR_0001s41770 (10)	scaffold_1:41484876-41485058(+) (10)	NA	P54697	Myosin-J heavy chain	AT5G54280.2	myosin 2 	LOC_Os07g37560.1	"myosin-Vb, putative, expressed"	Medtr2g095370.1	"IQ calmodulin-binding region; Myosin head, motor region; Myosin, N-terminal, SH3-like "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.140354.1.A1_at	A	A1TS	POPTR_0016s02330	POPTR_0016s02330 (11)	scaffold_16:1141141-1142781(+) (11)	NA	Q8CCB4	Vacuolar protein sorting-associated protein 53 homolog	AT1G50500.1	Membrane trafficking VPS53 family protein 	LOC_Os01g67880.1	"vacuolar protein sorting-associated protein 53, putative, expressed"	Medtr2g033780.1	"Vps53-like, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140383.2.A1_at	A	A1MS	POPTR_0001s01220	POPTR_0001s01220 (11)	scaffold_1:955970-956477(+) (11)	NA	NA	NA	AT3G45900.1	Ribonuclease P protein subunit P38-related 	LOC_Os03g63660.1	expressed protein	Medtr5g026860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140383.3.A1_a_at	A	A1TS	POPTR_0001s01220	POPTR_0001s01220 (11)	scaffold_1:958752-959143(+) (11)	NA	NA	NA	AT3G45900.1	Ribonuclease P protein subunit P38-related 	LOC_Os03g63660.1	expressed protein	Medtr5g026860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140394.1.A1_at	A	A1TS	POPTR_0019s11220	POPTR_0019s11220 (10)	scaffold_19:12581365-12581884(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr4g121070.1	Cell surface antigen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1404.2.A1_a_at	A	A1TS	POPTR_0010s07540	POPTR_0010s07540 (11)	scaffold_10:8559095-8560808(-) (11)	NA	NA	NA	AT3G24315.1	Sec20 family protein 	LOC_Os02g44111.2	"sec20 domain containing protein, expressed"	Medtr2g034220.1	"ATSEC20, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140400.1.A1_at	A	A1TS	POPTR_0014s11420	POPTR_0014s11420 (11)	scaffold_14:8490640-8490780(-) (11)	NA	Q9FZ24	"Pentatricopeptide repeat-containing protein At1g02370, mitochondrial"	AT1G02370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g25410.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g106520.1	Asparaginase/glutaminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140400.1.A1_s_at	A	A1TS	POPTR_0014s11420	POPTR_0014s11420 (11)	scaffold_14:8490844-8490947(-) (11)	NA	Q9FZ24	"Pentatricopeptide repeat-containing protein At1g02370, mitochondrial"	AT1G02370.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g25410.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g106520.1	Asparaginase/glutaminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140411.1.A1_s_at	A	A1TS	POPTR_0010s16890	POPTR_0010s16890 (11)	scaffold_10:15693349-15695335(+) (11)	NA	A7T167	Protein GDAP2 homolog	AT1G69340.1	appr-1-p processing enzyme family protein 	LOC_Os10g30750.1	"appr-1-p processing enzyme family protein, putative, expressed"	Medtr5g046410.1	"Cellular retinaldehyde-binding/triple function, C-terminal; Appr-1-p processing "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140413.1.A1_at	A	A1TS	POPTR_0003s12680	POPTR_0003s12680 (11)	scaffold_3:13199977-13200397(+) (11)	NA	Q9FHD7	Probable serine/threonine-protein kinase At5g41260	AT1G63500.1	Protein kinase protein with tetratricopeptide repeat domain 	LOC_Os03g61010.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14042.1.A1_s_at	A	A1TS	POPTR_0010s07410	POPTR_0010s07410 (11)	scaffold_10:8465058-8467275(-) (11)	NA	Q93Y39	DEAD-box ATP-dependent RNA helicase 13	AT3G16840.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g43140.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	AC146793_7.1	"Helicase, C-terminal; ; AC146793.7 35969-26139 F EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.140422.1.A1_s_at	A	A1TS	POPTR_0010s26190	POPTR_0010s26190 (11)	scaffold_10:21503308-21503645(+) (11)	NA	Q8H0T9	Katanin p80 WD40 repeat-containing subunit B1 homolog 1	AT5G08390.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os04g58130.1	"katanin p80 WD40 repeat-containing subunit B1 homolog 1, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140423.1.A1_at	A	A1MS	POPTR_0013s02150	POPTR_0013s02150 (10)	scaffold_13:1291452-1291930(-) (10)	NA	O81635	Kinesin-4	AT5G27550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g33030.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.140424.1.A1_at	A	A1TS	POPTR_0013s11000	POPTR_0013s11000 (11)	scaffold_13:11682894-11683271(+) (11)	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.2	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140428.1.A1_at	A	A1MS	POPTR_0007s04020	POPTR_0007s04020 (11)	scaffold_7:2403259-2403546(+) (11)	NA	Q9LXD9	Probable pectinesterase/pectinesterase inhibitor 51	AT5G09760.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g65790.1	"pectinesterase, putative, expressed"	Medtr4g142540.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.140430.1.A1_at	A	A1TS	POPTR_0002s14800	POPTR_0002s14800 (11)	scaffold_2:10977446-10977913(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT2G45340.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g04370.1	expressed protein	Medtr6g070100.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.140431.1.A1_s_at	A	A1TS	POPTR_0004s04250	POPTR_0004s04250 (11)	scaffold_4:3042156-3042637(-) (11)	NA	Q84JR3	"Pentatricopeptide repeat-containing protein At4g21705, mitochondrial"	AT4G21705.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140447.1.A1_at	A	A1TS	POPTR_0002s16080	POPTR_0002s16080 (11)	scaffold_2:11981265-11981444(+) (11)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47040.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.140448.1.A1_a_at	A	A2TS	POPTR_0005s06380	POPTR_0005s06380 (11)//POPTR_0007s04110 (11)	scaffold_5:4245160-4245627(+) (11)//scaffold_7:2473007-2473459(+) (11)	NA	Q941R4	GDP-mannose transporter	AT2G13650.3	golgi nucleotide sugar transporter 1 	LOC_Os08g01610.1	"DUF250 domain containing protein, putative, expressed"	Medtr3g143330.1	"GDP-mannose transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140448.1.A1_at	A	A1TS	POPTR_0005s06380	POPTR_0005s06380 (11)	scaffold_5:4245286-4245873(+) (11)	NA	Q941R4	GDP-mannose transporter	AT2G13650.3	golgi nucleotide sugar transporter 1 	LOC_Os08g01610.1	"DUF250 domain containing protein, putative, expressed"	Medtr3g143330.1	"GDP-mannose transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140448.2.A1_at	A	A1TS	POPTR_0007s04110	POPTR_0007s04110 (11)	scaffold_7:2473038-2473728(+) (11)	NA	Q941R4	GDP-mannose transporter	AT2G13650.3	golgi nucleotide sugar transporter 1 	LOC_Os08g01610.1	"DUF250 domain containing protein, putative, expressed"	Medtr3g143330.1	"GDP-mannose transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140449.1.S1_s_at	A	A1TS	POPTR_0010s25280	POPTR_0010s25280 (11)	scaffold_10:21032352-21032806(+) (11)	NA	NA	NA	AT5G18440.2	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink). "	LOC_Os01g59860.1	expressed protein	AC233682_40.1	hypothetical protein AC233682.2 154897-152825 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140460.1.A1_at	A	A1TS	POPTR_0009s08130	POPTR_0009s08130 (11)	scaffold_9:7488456-7488805(+) (11)	NA	Q55DY8	Mitoferrin	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140465.1.A1_at	A	A1MS	POPTR_0004s05460	POPTR_0004s05460 (11)	scaffold_4:4206669-4206711(-) (11)	NA	Q9CAG5	U-box domain-containing protein 7	AT2G27430.1	ARM repeat superfamily protein 	LOC_Os05g49810.1	armadillo/beta-catenin-like repeat containing protein	Medtr3g138130.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140467.1.A1_at	A	A1TS	POPTR_0016s12870	POPTR_0016s12870 (11)	scaffold_16:12225867-12225924(+) (11)	NA	Q08C72	Pre-mRNA-splicing factor CWC22 homolog	AT1G80930.1	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os12g15420.1	"nucampholin, putative, expressed"	Medtr7g112210.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.140477.1.A1_at	A	A1TS	POPTR_0001s07300	POPTR_0001s07300 (10)	scaffold_1:5493838-5494726(+) (10)	NA	O60318	80 kDa MCM3-associated protein	AT3G54380.1	SAC3/GANP/Nin1/mts3/eIF-3 p25 family 	LOC_Os03g22870.1	"SAC3/GANP family protein, putative, expressed"	Medtr8g045330.1	SAC3/GANP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140478.1.A1_at	A	A1TS	POPTR_0012s00490	POPTR_0012s00490 (10)	scaffold_12:20552-20643(-) (10)//scaffold_12:174409-174500(-) (10)//scaffold_12:261620-261711(-) (9)	NA	O60121	Uncharacterized protein C16G5.07c	AT4G27585.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os08g06200.1	"stomatin-like protein 2, putative, expressed"	Medtr3g122160.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140479.1.A1_at	A	A1TS	POPTR_0006s26840	POPTR_0006s26840 (11)	scaffold_6:24919764-24920439(+) (11)	NA	Q9ZP41	EG45-like domain containing protein	AT2G18660.1	plant natriuretic peptide A 	LOC_Os09g29690.1	"beta-expansin precursor, putative, expressed"	Medtr6g084060.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140480.1.A1_at	A	A1TS	POPTR_0004s12240	POPTR_0004s12240 (11)	scaffold_4:11311334-11311378(+) (11)	NA	P53536	"Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic"	AT3G29320.1	"Glycosyl transferase, family 35 "	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr6g014750.1	"Glycosyl transferase, family 35 "	GO:0005975|carbohydrate metabolic process	GO:0004645|phosphorylase activity	NA
PtpAffx.140498.1.A1_at	A	A1TS	POPTR_0018s01620	POPTR_0018s01620 (11)	scaffold_18:1511602-1511782(-) (11)	NA	Q9LFN6	DEAD-box ATP-dependent RNA helicase 56	AT5G11170.1	DEAD/DEAH box RNA helicase family protein  	LOC_Os01g36890.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g013740.1	ATP-requiring DNA helicase RecQ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.1405.1.S1_s_at	A	A2TS	POPTR_0012s08780	POPTR_0012s08790 (10)//POPTR_0012s08780 (10)	scaffold_12:9859765-9859798(+) (10)//scaffold_12:9871329-9871362(+) (10)//scaffold_12:9882799-9882832(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1405.1.S1_x_at	A	A1TS	POPTR_0012s08780	POPTR_0012s08780 (11)	scaffold_12:9859813-9860101(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140515.1.A1_at	A	A1TS	POPTR_0010s09560	POPTR_0010s09560 (11)	scaffold_10:10315629-10315965(-) (11)	NA	Q5ZLM0	Parafibromin	AT3G22590.1	PLANT HOMOLOGOUS TO PARAFIBROMIN 	LOC_Os03g46190.2	"parafibromin, putative, expressed"	Medtr5g007100.1	"RNA pol II accessory factor, Cdc73 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140528.1.A1_a_at	A	A1TS	POPTR_0002s08190	POPTR_0002s08190 (11)	scaffold_2:5678921-5679593(-) (11)	NA	Q0IU52	Aspartic proteinase Asp1	AT1G44130.1	Eukaryotic aspartyl protease family protein 	LOC_Os12g07780.2	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr4g024860.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140529.1.A1_s_at	A	A2TS	POPTR_0012s08120	POPTR_0015s08630 (11)//POPTR_0012s08120 (11)	scaffold_12:9164087-9164121(+) (11)//scaffold_15:9948005-9948039(+) (11)	NA	Q84WP5	UPF0497 membrane protein At2g36330	AT2G36330.1	Uncharacterised protein family (UPF0497) 	LOC_Os01g47200.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g113600.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.140535.1.A1_at	A	A1TS	POPTR_0015s02200	POPTR_0015s02200 (10)	scaffold_15:1532306-1534834(-) (10)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.140535.2.A1_at	A	A1TS	POPTR_0012s01560	POPTR_0012s01560 (9)	scaffold_12:1191855-1193343(+) (9)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.140553.1.A1_at	A	A1TS	POPTR_0016s02390	POPTR_0016s02390 (11)	scaffold_16:1176341-1176796(+) (11)	POPTR_0016s02360 (8)	Q9CAI3	Probable cinnamyl alcohol dehydrogenase 1	AT1G72680.1	cinnamyl-alcohol dehydrogenase 	LOC_Os10g11810.2	"dehydrogenase, putative, expressed"	Medtr2g009920.1	"Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.140558.1.A1_at	A	A1TS	POPTR_0004s22490	POPTR_0004s22490 (9)	scaffold_4:21372048-21372569(-) (11)	NA	Q9M2Y9	Transcription factor RAX3	AT5G57620.1	myb domain protein 36 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14056.1.S1_at	A	A1TS	POPTR_0001s35310	POPTR_0001s35310 (11)	scaffold_1:33640749-33640897(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140560.1.A1_at	A	A1MS	POPTR_0007s04020	POPTR_0007s04020 (11)	scaffold_7:2402369-2402858(+) (11)	NA	Q9LXD9	Probable pectinesterase/pectinesterase inhibitor 51	AT5G09760.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g65790.1	"pectinesterase, putative, expressed"	Medtr4g142540.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.140567.1.A1_at	A	A1TS	POPTR_0012s11600	POPTR_0012s11600 (9)	scaffold_12:11958663-11959151(-) (9)	NA	Q9LVU3	YDG domain-containing protein At5g47160	AT5G47160.1	YDG/SRA domain-containing protein 	LOC_Os09g19830.1	"histone-lysine N-methyltransferase, putative, expressed"	Medtr5g013560.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140586.1.A1_at	A	A1TS	POPTR_0005s12410	POPTR_0005s12410 (11)	scaffold_5:9166850-9167261(+) (11)	NA	NA	NA	AT4G36600.1	Late embryogenesis abundant (LEA) protein 	NA	NA	Medtr5g020400.1	"late embryogenesis abundant domain-containing protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140586.1.A1_s_at	A	A1TS	POPTR_0005s12410	POPTR_0005s12410 (11)	scaffold_5:9166772-9167183(+) (11)	NA	NA	NA	AT4G36600.1	Late embryogenesis abundant (LEA) protein 	NA	NA	Medtr5g020400.1	"late embryogenesis abundant domain-containing protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140603.1.A1_at	A	A1TS	POPTR_0010s12120	POPTR_0010s12120 (11)	scaffold_10:12199294-12201688(-) (11)	NA	NA	NA	NA	NA	LOC_Os03g49940.1	"integral membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.140618.1.A1_at	A	A1TS	POPTR_0002s07270	POPTR_0002s07270 (11)	scaffold_2:4971639-4971673(+) (11)	NA	NA	NA	AT1G48880.1	TRICHOME BIREFRINGENCE-LIKE 7 	LOC_Os01g65800.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr3g125130.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140618.1.A1_s_at	A	A1TS	POPTR_0002s07270	POPTR_0002s07270 (11)	scaffold_2:4970708-4971921(+) (11)	NA	NA	NA	AT1G48880.1	TRICHOME BIREFRINGENCE-LIKE 7 	LOC_Os01g65800.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr3g125130.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140635.1.A1_at	A	A1TS	POPTR_0018s03710	POPTR_0018s03710 (11)	scaffold_18:3158965-3160097(-) (11)	NA	NA	NA	AT5G10710.1	"INVOLVED IN: chromosome segregation, cell division; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Centromere protein Cenp-O (InterPro:IPR018464); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g21610.1	expressed protein	Medtr3g133360.1	hypothetical protein 	GO:0051301|cell division||GO:0007059|chromosome segregation	GO:0005515|protein binding	"GO:0005634|nucleus||GO:0000775|""chromosome, centromeric region"""
PtpAffx.14065.1.A1_a_at	A	A1TS	POPTR_0002s10290	POPTR_0002s10290 (11)	scaffold_2:7381776-7382286(+) (11)	NA	Q9VDL1	UPF0483 protein CG5412	AT4G24380.1	"INVOLVED IN: 10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os04g37710.1	"serine hydrolase domain containing protein, expressed"	Medtr5g074690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14068.1.S1_s_at	A	A1TS	POPTR_0005s23040	POPTR_0005s23040 (11)	scaffold_5:21873994-21875875(-) (11)	NA	NA	NA	AT4G02830.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. 	LOC_Os01g63050.1	expressed protein	Medtr1g086470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140681.1.A1_s_at	A	A1TS	POPTR_0009s12330	POPTR_0009s12330 (11)	scaffold_9:10076075-10076131(+) (11)	NA	Q9MAK9	26S protease regulatory subunit S10B homolog B	AT1G45000.1	AAA-type ATPase family protein 	LOC_Os02g10640.1	"26S protease regulatory subunit, putative, expressed"	Medtr3g162820.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.140704.1.A1_s_at	A	A1TS	POPTR_0004s17580	POPTR_0004s17580 (11)	scaffold_4:17723156-17723207(+) (11)	NA	P45434	Translocon-associated protein subunit alpha	AT2G16595.1	"Translocon-associated protein (TRAP), alpha subunit "	LOC_Os06g50154.1	"translocon-associated protein subunit alpha precursor, putative, expressed"	Medtr3g163280.1	"Translocon-associated protein subunit alpha precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140711.1.A1_at	A	A1TS	POPTR_0030s00250	POPTR_0030s00250 (9)	scaffold_30:57955-58482(+) (11)	NA	P0C7Q7	"Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial"	AT1G12700.1	ATP binding;nucleic acid binding;helicases 	LOC_Os01g57410.3	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr4g132700.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140716.1.A1_at	A	A1TS	POPTR_0003s21410	POPTR_0003s21410 (11)	scaffold_3:19584799-19585325(+) (11)	NA	Q54BM5	Branchpoint-bridging protein	AT3G32940.1	RNA-binding KH domain-containing protein 	LOC_Os08g01070.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g105450.1	"RNA binding, related "	NA	GO:0003723|RNA binding	NA
PtpAffx.140723.1.A1_at	A	A1TS	POPTR_0001s21820	POPTR_0001s21820 (11)	scaffold_1:20310972-20311915(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140744.1.A1_at	A	A1TS	POPTR_0002s26010	POPTR_0002s26010 (11)	scaffold_2:22996486-22996644(-) (11)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os10g32990.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr7g116690.1	"Leucine-rich repeat, typical subtype "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.140759.1.A1_at	A	A1TS	POPTR_0007s10370	POPTR_0007s10370 (11)	scaffold_7:10300216-10300708(+) (11)	NA	Q9SZT8	"Pentatricopeptide repeat-containing protein At4g37380, chloroplastic"	AT4G37380.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g02280.1	"pentatricopeptide, putative, expressed"	Medtr4g134470.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14077.1.S1_at	A	A1TS	POPTR_0015s09500	POPTR_0015s09500 (11)	scaffold_15:10710126-10710672(+) (11)	NA	NA	NA	AT3G48240.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os11g25780.1	"PB1 domain containing protein, expressed"	Medtr3g114750.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140774.1.A1_at	A	A1TS	POPTR_0002s07900	POPTR_0002s07900 (11)	scaffold_2:5429589-5430077(-) (11)	NA	NA	NA	AT1G21610.2	wound-responsive family protein 	LOC_Os01g66050.1	"wound-responsive family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140781.1.A1_at	A	A1TS	POPTR_0014s13540	POPTR_0014s13540 (11)	scaffold_14:9956315-9956740(-) (11)	NA	Q93WC9	"Adenylate isopentenyltransferase 3, chloroplastic"	AT3G63110.1	isopentenyltransferase 3 	LOC_Os07g11050.1	"IPP transferase, putative, expressed"	Medtr1g140830.1	Isopentenyl transferase-like 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004811|tRNA isopentenyltransferase activity||GO:0005524|ATP binding	NA
PtpAffx.1408.1.A1_s_at	A	A1TS	POPTR_0010s02830	POPTR_0010s02830 (11)	scaffold_10:3332634-3333019(+) (11)	NA	NA	NA	AT4G02040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14081.1.S1_at	A	A1TS	POPTR_0013s05700	POPTR_0013s05700 (11)	scaffold_13:4105691-4105992(-) (11)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os05g40980.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140839.1.A1_at	A	A1TS	POPTR_0001s34520	POPTR_0001s34520 (11)	scaffold_1:32655693-32656147(+) (11)	NA	Q8VWJ2	Probable WRKY transcription factor 28	AT4G18170.1	WRKY DNA-binding protein 28 	LOC_Os01g43650.2	"OsWRKY11 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g098600.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.140848.1.A1_at	A	A1TS	POPTR_0013s11570	POPTR_0013s11570 (9)	scaffold_13:12218086-12218413(+) (11)	NA	Q9P4S5	"tRNA nucleotidyltransferase, mitochondrial"	AT1G22660.1	Polynucleotide adenylyltransferase family protein 	LOC_Os12g07350.1	"tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed"	Medtr5g023710.1	Polynucleotide adenylyltransferase region 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0016779|nucleotidyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.140860.1.A1_at	A	A1TS	POPTR_0001s01500	POPTR_0001s01500 (11)	scaffold_1:1116087-1116988(-) (11)	NA	Q6NS09	Transmembrane protein 45B	AT1G32120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Aminotransferase-like, plant mobile domain (InterPro:IPR019557), Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Aminotransferase-like, plant mobile domain family protein (TAIR:AT1G51538.1); Has 16736 Blast hits to 9656 proteins in 576 species: Archae - 4; Bacteria - 1182; Metazoa - 7098; Fungi - 2631; Plants - 1178; Viruses - 174; Other Eukaryotes - 4469 (source: NCBI BLink). "	LOC_Os11g40570.3	"plant viral response family protein, putative, expressed"	Medtr5g027370.1	Protein of unknown function DUF716 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140861.1.A1_at	A	A1TS	POPTR_0008s15740	POPTR_0008s15740 (11)	scaffold_8:10495559-10495933(+) (11)	NA	Q9LUH8	Heat stress transcription factor A-6b	AT3G22830.1	heat shock transcription factor  A6B 	LOC_Os07g08140.1	"heat stress transcription factor, putative, expressed"	Medtr3g139780.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.140872.1.A1_at	A	A1TS	POPTR_0011s15660	POPTR_0011s15660 (11)	scaffold_11:17752005-17752402(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.140882.1.A1_at	A	A2MS	POPTR_0001s14610	POPTR_0001s14610 (10)//POPTR_0001s14600 (9)	scaffold_1:11449260-11460042(+) (10)//scaffold_1:11458762-11460108(+) (9)	NA	P0C8Y0	Camelliol C synthase	AT1G78955.1	camelliol C synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr4g163370.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.140884.1.A1_at	A	A1MS	POPTR_0016s11020	POPTR_0016s11020 (11)	scaffold_16:9459829-9460613(-) (11)	NA	NA	NA	AT2G36580.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140884.1.A1_s_at	A	A1MS	POPTR_0016s11020	POPTR_0016s11020 (10)	scaffold_16:9459895-9460597(-) (10)	NA	NA	NA	AT2G36580.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140888.1.A1_s_at	A	A1TS	POPTR_0003s11810	POPTR_0003s11810 (11)	scaffold_3:12573984-12574639(+) (11)	NA	O23976	7-ethoxycoumarin O-deethylase	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.140895.1.A1_at	A	A1TS	POPTR_0008s20710	POPTR_0008s20710 (11)	scaffold_8:14615737-14616158(+) (11)	NA	NA	NA	AT3G06130.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os11g05010.3	"heavy-metal-associated domain-containing protein, putative, expressed"	Medtr1g099270.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.140896.1.A1_s_at	A	A1TS	POPTR_0004s11800	POPTR_0004s11800 (11)	scaffold_4:10671562-10672374(+) (11)	NA	Q9LLC1	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic"	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	Medtr7g012310.1	Biotin-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140896.2.A1_at	A	A1TS	POPTR_0017s12810	POPTR_0017s12810 (11)	scaffold_17:12994238-12994274(+) (11)	NA	Q9LLC1	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic"	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	AC231342_10.1	Biotin-binding site AC231342.3 52802-49143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140905.1.A1_at	A	A1TS	POPTR_0014s00780	POPTR_0014s00780 (9)	scaffold_14:745020-745462(+) (9)	NA	NA	NA	AT2G22840.1	growth-regulating factor 1 	LOC_Os03g51970.1	"growth-regulating factor, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.140926.1.S1_at	A	A1TS	POPTR_0017s12340	POPTR_0017s12340 (11)	scaffold_17:12532123-12532811(+) (11)	NA	NA	NA	AT5G39530.1	Protein of unknown function (DUF1997) 	LOC_Os03g07200.2	expressed protein	Medtr6g013340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140928.1.A1_at	A	A1TS	POPTR_0003s15970	POPTR_0003s15970 (11)	scaffold_3:15618364-15618909(+) (11)	NA	Q9FZ87	Indole-3-acetic acid-amido synthetase GH3.17	AT1G28130.1	Auxin-responsive GH3 family protein 	LOC_Os07g47490.2	"OsGH3.11 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14093.1.A1_s_at	A	A1TS	POPTR_0018s10880	POPTR_0018s10880 (11)	scaffold_18:11744050-11744566(-) (11)	NA	NA	NA	AT2G23810.1	tetraspanin8 	LOC_Os09g25760.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
PtpAffx.140937.1.A1_at	A	A1MS	POPTR_0017s11710	POPTR_0017s11710 (11)	scaffold_17:11472728-11472828(+) (11)	NA	Q01105	Protein SET	AT1G18800.1	NAP1-related protein 2 	LOC_Os02g36710.1	"SET, putative, expressed"	Medtr8g112240.1	Nucleosome assembly protein (NAP) 	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	NA	GO:0005634|nucleus
PtpAffx.140939.1.A1_at	A	A1TA	POPTR_0006s14560	POPTR_0006s14560 (11)	scaffold_6:11896934-11897376(-) (11)	NA	NA	NA	AT3G13960.1	growth-regulating factor 5 	LOC_Os02g47280.2	"growth-regulating factor, putative, expressed"	Medtr8g024740.1	"AtGRF5, putative "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.140955.1.A1_at	A	A1TS	POPTR_0005s20130	POPTR_0005s20130 (11)	scaffold_5:19167762-19168186(-) (11)	NA	NA	NA	AT1G21740.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g35070.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr5g106630.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140962.1.A1_at	A	A1TS	POPTR_0012s01530	POPTR_0012s01530 (11)	scaffold_12:1156452-1156977(+) (11)	NA	Q9FGL9	Polypyrimidine tract-binding protein homolog 2	AT5G53180.1	polypyrimidine tract-binding protein 2 	LOC_Os01g43170.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr3g124540.1	"Nucleotide-binding, alpha-beta plait "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140965.1.A1_at	A	A1TS	POPTR_0017s04660	POPTR_0017s04660 (11)	scaffold_17:3563544-3563863(-) (11)	NA	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140974.1.A1_at	A	A1TS	POPTR_0001s09730	POPTR_0001s09730 (11)	scaffold_1:7474049-7474539(-) (11)	NA	NA	NA	AT4G23490.1	Protein of unknown function (DUF604) 	LOC_Os04g48950.1	"fringe-related protein, putative, expressed"	Medtr5g010170.1	Protein of unknown function DUF604 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.140976.1.A1_s_at	A	A1TS	POPTR_0012s05590	POPTR_0012s05590 (11)	scaffold_12:5246426-5247071(-) (11)	NA	P41111	Translation initiation factor eIF-2B subunit delta	AT5G38640.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g44310.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.14098.1.A1_s_at	A	A2TS	POPTR_0014s12170	POPTR_0014s12170 (11)//POPTR_0002s20350 (9)	scaffold_14:8999052-8999703(-) (11)//scaffold_2:16371289-16371775(-) (9)	NA	O81416	Endoglucanase 17	AT4G02290.1	glycosyl hydrolase 9B13 	LOC_Os01g21070.1	"endoglucanase, putative, expressed"	Medtr1g108080.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.140988.1.A1_at	A	A1TS	POPTR_0008s05610	POPTR_0008s05610 (11)	scaffold_8:3253994-3254673(-) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT3G55430.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.140999.1.A1_at	A	A4MS	POPTR_0017s06080	POPTR_0017s06080 (11)//POPTR_0017s06120 (11)//POPTR_0322s00200 (11)//POPTR_0017s06100 (9)	scaffold_17:4715621-4715783(+) (11)//scaffold_17:4730073-4739417(+) (11)//scaffold_17:4739326-4739490(+) (9)//scaffold_322:14393-14557(-) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34230.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr5g036700.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141002.1.A1_at	A	A1TS	POPTR_0013s06180	POPTR_0013s06180 (9)	scaffold_13:4571516-4571964(-) (11)	NA	Q6MDI2	Polyribonucleotide nucleotidyltransferase	AT3G03710.1	"polyribonucleotide nucleotidyltransferase, putative "	LOC_Os07g07310.1	"polynucleotide phosphorylase, putative, expressed"	Medtr7g103420.1	Polyribonucleotide nucleotidyltransferase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0000175|3'-5'-exoribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.141034.1.A1_at	A	A2TS	POPTR_1101s00200	POPTR_1101s00200 (11)//POPTR_0013s14590 (10)	scaffold_1101:837-1098(-) (11)//scaffold_13:14760199-14760460(-) (10)	POPTR_0151s00200 (6)	O64477	G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130	AT2G19130.1	S-locus lectin protein kinase family protein 	LOC_Os07g36780.1	"S-domain receptor-like protein kinase, putative, expressed"	Medtr2g103160.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.141037.1.A1_at	A	A1TS	POPTR_0003s14090	POPTR_0003s14090 (10)	scaffold_3:14271971-14272621(+) (10)	NA	Q39828	Dynamin-related protein 5A	AT5G42080.1	dynamin-like protein 	LOC_Os05g48240.1	"dynamin family protein, putative, expressed"	Medtr5g009190.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.141039.1.A1_at	A	A1TS	POPTR_0003s01720	POPTR_0003s01720 (11)	scaffold_3:1571423-1571496(-) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT5G64530.1	xylem NAC domain 1 	LOC_Os04g35660.1	"no apical meristem protein, putative, expressed"	Medtr4g142900.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.141039.1.A1_s_at	A	A1TS	POPTR_0003s01720	POPTR_0003s01720 (11)	scaffold_3:1571530-1571847(-) (11)	NA	Q52QH4	NAC domain-containing protein 68	AT5G64530.1	xylem NAC domain 1 	LOC_Os04g35660.1	"no apical meristem protein, putative, expressed"	Medtr4g142900.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.141056.1.A1_at	A	A1TA	POPTR_0008s11480	POPTR_0008s11480 (11)	scaffold_8:7289441-7289959(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G25700.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g48330.1	"aspartyl protease family protein, putative, expressed"	Medtr5g098350.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141077.1.A1_at	A	A1TS	POPTR_0016s04010	POPTR_0016s04010 (11)	scaffold_16:2249809-2250083(-) (11)	NA	P93002	Regulatory protein NPR1	AT2G41370.1	Ankyrin repeat family protein / BTB/POZ domain-containing protein 	LOC_Os01g72020.1	"BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr7g107020.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.141081.1.A1_at	A	A1MS	POPTR_0013s03080	POPTR_0013s03080 (11)	scaffold_13:1875204-1875610(-) (11)	NA	Q9SQT8	"Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic"	AT3G06350.1	"dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative "	LOC_Os12g34874.3	"bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed"	Medtr4g125380.1	Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; 	GO:0055114|oxidation reduction	GO:0004764|shikimate 5-dehydrogenase activity||GO:0003855|3-dehydroquinate dehydratase activity	GO:0005737|cytoplasm
PtpAffx.141083.1.A1_at	A	A1TS	POPTR_0007s13750	POPTR_0007s13750 (9)	scaffold_7:13797006-13797564(-) (9)	NA	Q20035	Uncharacterized membrane protein F35D11.3	AT4G36210.3	Protein of unknown function (DUF726) 	LOC_Os03g02170.2	"transmembrane and coiled-coil domain-containing protein 4, putative, expressed"	Medtr5g021350.1	Protein of unknown function DUF726 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141088.1.A1_at	A	A1TS	POPTR_0010s13250	POPTR_0010s13250 (9)	scaffold_10:13116396-13116751(-) (9)	NA	NA	NA	AT1G68350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 20 Blast hits to 20 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141099.1.A1_at	A	A1TS	POPTR_0009s10630	POPTR_0009s10630 (11)	scaffold_9:9092607-9092776(-) (11)	NA	NA	NA	AT2G15695.1	"Protein of unknown function DUF829, transmembrane 53 "	LOC_Os11g40070.1	expressed protein	Medtr4g129420.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141102.1.A1_at	A	A1TS	POPTR_0013s10240	POPTR_0013s10240 (11)	scaffold_13:10259820-10260060(-) (11)	NA	NA	NA	AT1G33800.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141117.1.A1_at	A	A1TS	POPTR_0015s11920	POPTR_0015s11920 (11)	scaffold_15:12414077-12414552(+) (11)//scaffold_15:15071935-15072402(+) (10)//scaffold_88:76926-77402(+) (9)	POPTR_0015s15900 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141124.1.A1_at	A	A1TA	POPTR_0001s35030	POPTR_0001s35030 (10)	scaffold_1:33297745-33298070(+) (10)	NA	Q9LYK2	High affinity nitrate transporter 2.7	AT5G14570.1	high affinity nitrate transporter 2.7 	LOC_Os01g50820.1	"transporter, major facilitator family, putative, expressed"	AC233663_16.1	"High affinity nitrate transporter, putative AC233663.2 118942-120870 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141124.2.S1_s_at	A	A1TS	POPTR_0001s35030	POPTR_0001s35030 (11)	scaffold_1:33295133-33297744(-) (11)	NA	Q9LYK2	High affinity nitrate transporter 2.7	AT5G14570.1	high affinity nitrate transporter 2.7 	LOC_Os01g50820.1	"transporter, major facilitator family, putative, expressed"	AC233663_16.1	"High affinity nitrate transporter, putative AC233663.2 118942-120870 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141124.3.S1_a_at	A	A1TS	POPTR_0001s38640	POPTR_0001s38640 (11)	scaffold_1:37824367-37824576(-) (11)	NA	Q32P51	Heterogeneous nuclear ribonucleoprotein A1-like 2	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g42820.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.141139.1.A1_at	A	A1TS	POPTR_0016s10130	POPTR_0016s10130 (11)	scaffold_16:8307945-8308380(+) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT5G02010.1	RHO guanyl-nucleotide exchange factor 7 	LOC_Os01g62990.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.141142.1.A1_at	A	A1TS	POPTR_0015s13880	POPTR_0015s13880 (10)	scaffold_15:13635124-13635473(+) (11)	NA	P92965	Arginine/serine-rich-splicing factor RSP40	AT4G25500.4	arginine/serine-rich splicing factor 35 	LOC_Os02g03040.1	"RNA recognition motif containing protein, expressed"	Medtr1g129430.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.141148.1.A1_at	A	A1MS	POPTR_0008s15640	POPTR_0008s15640 (9)	scaffold_8:10408475-10408559(-) (9)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.1	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.141148.1.A1_s_at	A	A2TS	POPTR_0008s15640	POPTR_0008s15640 (11)//POPTR_0010s09280 (11)	scaffold_10:10153471-10154499(+) (11)//scaffold_8:10408653-10409824(-) (11)	NA	Q9SV13	Sulfate transporter 3.1	AT3G51895.1	sulfate transporter 3;1 	LOC_Os03g06520.1	"sulfate transporter, putative, expressed"	Medtr1g083930.1	Sulphate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.141159.1.A1_at	A	A1TS	POPTR_0008s22790	POPTR_0008s22790 (10)	scaffold_8:17575951-17576432(+) (10)	NA	Q6AXZ3	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	AT5G18580.1	tonneau 2 (TON2) 	LOC_Os05g05710.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed"	Medtr8g139320.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14116.1.S1_at	A	A1TS	POPTR_0002s20480	POPTR_0002s20480 (11)	scaffold_2:16540502-16540840(-) (11)	NA	P32292	Indole-3-acetic acid-induced protein ARG2	AT4G02380.1	senescence-associated gene 21 	NA	NA	Medtr1g108120.1	Late embryogenesis abundant protein 3 	GO:0006950|response to stress	NA	NA
PtpAffx.141171.1.A1_s_at	A	A1TS	POPTR_0019s07530	POPTR_0019s07530 (11)	scaffold_19:8559020-8559169(-) (11)	NA	Q7X996	CBL-interacting protein kinase 2	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.141179.1.A1_at	A	A1MS	POPTR_0010s04880	POPTR_0010s04880 (11)	scaffold_10:6067079-6067446(+) (11)	NA	NA	NA	AT1G69980.1	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g38750.1	expressed protein	Medtr5g038130.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141192.1.S1_at	A	A1TS	POPTR_0002s06770	POPTR_0002s06770 (11)	scaffold_2:4544727-4544840(-) (11)	NA	Q54IL5	UDP-sugar-dependent glycosyltransferase 52	AT1G43620.3	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64750.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr1g125050.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.141194.1.S1_at	A	A1TS	POPTR_0001s36800	POPTR_0001s36800 (11)	scaffold_1:35530772-35531770(+) (11)	NA	NA	NA	AT2G34680.1	Outer arm dynein light chain 1 protein 	LOC_Os07g05470.1	"AIR9 protein, putative, expressed"	Medtr2g055450.1	Leucine-rich repeat 	NA	GO:0005515|protein binding	NA
PtpAffx.141199.1.A1_at	A	A1TS	POPTR_0015s13450	POPTR_0015s13450 (11)	scaffold_15:13399813-13400044(+) (11)	NA	Q32LJ2	ADP-ribosylation factor-related protein 1	AT5G52210.2	GTP-binding protein 1 	LOC_Os03g27450.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g035450.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.141202.1.A1_at	A	A1TS	POPTR_0001s26830	POPTR_0001s26830 (10)	scaffold_1:25833779-25835940(+) (10)	NA	A5PK19	Methyltransferase-like protein 13	AT3G60910.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g46340.1	"methyltransferase, putative, expressed"	Medtr4g089760.1	"Putative methyltransferase KIAA0859 homolog, "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.141209.1.A1_at	A	A1TS	POPTR_0006s13270	POPTR_0006s13270 (11)	scaffold_6:10514543-10514804(-) (11)	NA	NA	NA	AT3G09730.1	unknown protein; Has 1171 Blast hits to 1097 proteins in 212 species: Archae - 14; Bacteria - 83; Metazoa - 583; Fungi - 105; Plants - 149; Viruses - 14; Other Eukaryotes - 223 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141212.1.A1_s_at	A	A1TS	POPTR_0030s00300	POPTR_0030s00300 (11)	scaffold_30:79522-80132(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.141217.1.A1_at	A	A1MS	POPTR_0018s09060	POPTR_0018s09060 (10)	scaffold_18:9938501-9938951(-) (10)	NA	Q8S3D1	Transcription factor bHLH68	AT4G29100.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g14010.1	"ethylene-responsive protein related, putative, expressed"	AC233783_18.2	Helix-loop-helix DNA-binding AC233783.1 82495-77637 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141227.1.A1_s_at	A	A1TS	POPTR_0014s18930	POPTR_0014s18930 (11)	scaffold_14:16518104-16519720(-) (11)	NA	Q6DCY9	HAUS augmin-like complex subunit 3	AT5G48520.1	unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; Bacteria - 41; Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). 	LOC_Os06g08730.1	expressed protein	Medtr1g046340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14123.1.A1_s_at	A	A1TS	POPTR_0011s11260	POPTR_0011s11260 (11)	scaffold_11:13988228-13988354(+) (11)	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.14123.2.A1_s_at	A	A1TS	POPTR_0011s11260	POPTR_0011s11260 (10)	scaffold_11:13984233-13987878(+) (10)	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
PtpAffx.141260.1.S1_x_at	A	A1TS	POPTR_0013s14790	POPTR_0013s14790 (9)	scaffold_13:14917191-14917588(-) (9)	POPTR_0013s01570 (6)	Q8LEE9	Fasciclin-like arabinogalactan protein 12	AT5G60490.1	FASCICLIN-like arabinogalactan-protein 12 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141260.2.A1_at	A	A1TS	POPTR_0012s00670	POPTR_0012s00670 (11)	scaffold_12:370033-370491(-) (11)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.141260.4.S1_at	A	A1TA	POPTR_0012s00670	POPTR_0012s00670 (9)	scaffold_12:370479-370627(+) (9)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.141271.1.A1_at	A	A1TS	POPTR_0008s00750	POPTR_0008s00750 (9)	scaffold_8:340333-340786(-) (9)	NA	NA	NA	AT3G21150.1	B-box 32 	NA	NA	Medtr2g103200.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.141278.1.A1_at	A	A1MS	POPTR_0015s11040	POPTR_0015s11040 (10)	scaffold_15:11731173-11731344(+) (10)	NA	O82743	Agamous-like MADS-box protein AGL19	AT4G22950.1	AGAMOUS-like 19 	LOC_Os04g49150.1	"OsMADS17 - MADS-box family gene with MIKCc type-box, expressed"	Medtr3g013050.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.141306.1.S1_at	A	A1TS	POPTR_0005s15770	POPTR_0005s15770 (11)	scaffold_5:12374884-12375155(+) (11)	NA	Q86IB5	General transcription factor IIH subunit 3	AT1G18340.1	basal transcription factor complex subunit-related 	LOC_Os02g03340.4	"RNA polymerase II transcription factor B subunit 4, putative, expressed"	Medtr3g097520.1	Transcription factor Tfb4 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0016251|general RNA polymerase II transcription factor activity	GO:0000439|core TFIIH complex
PtpAffx.141320.1.S1_at	A	A1TS	POPTR_0019s05010	POPTR_0019s05010 (11)	scaffold_19:5232101-5233356(+) (11)	NA	Q5RC72	Casein kinase I isoform delta	AT3G03940.1	Protein kinase family protein 	LOC_Os01g56580.2	"CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr7g100510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.141342.1.S1_at	A	A1TS	POPTR_0009s12230	POPTR_0009s12230 (11)	scaffold_9:10009398-10010389(-) (11)	NA	Q10137	Sec14 cytosolic factor	AT2G21520.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g04020.1	expressed protein	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141343.1.S1_at	A	A1TS	POPTR_0010s21680	POPTR_0010s21680 (11)	scaffold_10:18870058-18870951(-) (11)	NA	P41891	Protein gar2	AT3G55340.1	phragmoplastin interacting protein 1 	LOC_Os05g02400.1	"RNA recognition motif containing protein, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.141359.1.S1_s_at	A	A1TS	POPTR_0005s18160	POPTR_0005s18160 (11)	scaffold_5:16268463-16268943(-) (11)	NA	O81360	"Zeaxanthin epoxidase, chloroplastic"	AT5G67030.1	zeaxanthin epoxidase (ZEP) (ABA1) 	LOC_Os04g37619.1	"zeaxanthin epoxidase, chloroplast precursor, putative, expressed"	CU571152_22.1	Forkhead-associated CU571152.5 100554-94827 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141421.1.S1_at	A	A1TS	POPTR_0025s00740	POPTR_0025s00740 (10)	scaffold_25:399202-399331(+) (10)	NA	O22060	Sucrose-phosphate synthase 1	AT5G20280.1	sucrose phosphate synthase 1F 	LOC_Os08g20660.2	"sucrose-phosphate synthase, putative, expressed"	Medtr8g121670.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.141421.1.S1_s_at	A	A1TS	POPTR_0025s00740	POPTR_0025s00740 (11)	scaffold_25:399321-400790(+) (11)	POPTR_0006s06300 (6)	O22060	Sucrose-phosphate synthase 1	AT5G20280.1	sucrose phosphate synthase 1F 	LOC_Os08g20660.2	"sucrose-phosphate synthase, putative, expressed"	Medtr8g121670.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.141424.1.S1_at	A	A1TS	POPTR_0003s11220	POPTR_0003s11220 (11)	scaffold_3:12067306-12068164(+) (11)	POPTR_0001s00250 (6)	Q9SU40	Monocopper oxidase-like protein SKU5	AT4G12420.2	Cupredoxin superfamily protein 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr8g106260.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.141425.1.S1_at	A	A1TS	POPTR_0014s05920	POPTR_0014s05920 (11)	scaffold_14:4432356-4433624(+) (11)	NA	Q8VYK7	Autophagy-related protein 8f	AT4G16520.2	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14144.1.S1_at	A	A2TS	POPTR_0015s08200	POPTR_0729s00200 (11)//POPTR_0015s08200 (11)	scaffold_15:9463976-9464370(-) (11)//scaffold_729:2485-2879(-) (11)	NA	NA	NA	AT1G19020.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g50710.1	expressed protein	Medtr8g125030.1	"UVI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141448.1.S1_s_at	A	A1TS	POPTR_0006s23550	POPTR_0006s23550 (11)	scaffold_6:22266547-22266923(-) (11)	NA	NA	NA	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.6	"smr domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141451.1.S1_s_at	A	A2TS	POPTR_0002s25390	POPTR_0002s25390 (11)//POPTR_0014s18530 (11)	scaffold_14:15799742-15800672(-) (11)//scaffold_2:22463430-22464399(+) (11)	NA	Q9SZD4	26S proteasome regulatory subunit 4 homolog A	AT4G29040.1	regulatory particle AAA-ATPase 2A 	LOC_Os03g18690.1	"26S protease regulatory subunit 4, putative, expressed"	Medtr7g118120.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
PtpAffx.141458.1.S1_s_at	A	A1TS	POPTR_0006s06980	POPTR_0006s06980 (11)	scaffold_6:5029224-5032752(-) (11)	NA	O58107	Probable galactokinase	AT3G10700.1	galacturonic acid kinase 	LOC_Os04g51880.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr4g160950.1	Mevalonate and galactokinase; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.14146.1.A1_s_at	A	A1TS	POPTR_0001s05690	POPTR_0001s05690 (11)	scaffold_1:4382951-4383190(+) (11)	NA	P25083	"ADP,ATP carrier protein, mitochondrial"	AT5G13490.2	ADP/ATP carrier 2 	LOC_Os02g48720.2	"mitochondrial carrier protein, putative, expressed"	Medtr8g037220.1	Adenine nucleotide translocator 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141467.1.S1_s_at	A	A1TS	POPTR_0025s00600	POPTR_0025s00600 (11)	scaffold_25:291664-292542(+) (11)	NA	Q9JM76	Actin-related protein 2/3 complex subunit 3	AT1G60430.2	actin-related protein C3 	LOC_Os02g14000.2	"actin-related protein 2/3 complex subunit 3, putative, expressed"	Medtr8g121950.1	"ARP2/3 complex, 21 kDa p21-Arc subunit "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
PtpAffx.141473.1.S1_s_at	A	A2TS	POPTR_0001s01790	POPTR_0001s01790 (11)//POPTR_0003s09680 (11)	scaffold_1:1308140-1309893(-) (11)//scaffold_3:10943025-10944658(+) (11)	NA	Q9UT88	Probable phosphomevalonate kinase	AT1G31910.1	GHMP kinase family protein 	LOC_Os03g14830.1	"GHMP kinases ATP-binding protein, putative, expressed"	Medtr3g124290.1	Phosphomevalonate kinase Erg8; GHMP kinase; ; 	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.141519.1.S1_at	A	A1TS	POPTR_0005s06050	POPTR_0005s06050 (11)	scaffold_5:3975230-3976938(-) (11)	POPTR_0007s03850 (8)	Q9FMJ0	Phosphatidylinositol 4-kinase beta 1	AT5G64070.1	phosphatidylinositol 4-OH kinase beta1 	LOC_Os11g10420.1	"phosphatidylinositol kinase, putative, expressed"	Medtr4g142660.1	"Phosphatidylinositol 3- and 4-kinase, catalytic "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.141537.2.A1_at	A	A1TA	POPTR_0009s01460	POPTR_0009s01460 (10)	scaffold_9:1791101-1791207(+) (10)	NA	Q8T1P1	Uncharacterized protein DDB_G0273453/DDB_G0273565	AT5G60760.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g39870.1	"2-phosphoglycerate kinase-related, putative, expressed"	AC235487_44.1	"2-phosphoglycerate kinase-related, putative AC235487.1 210241-205859 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141538.1.S1_s_at	A	A2TS	POPTR_0005s24500	POPTR_0005s24500 (11)//POPTR_0005s24490 (10)	scaffold_5:23040171-23048238(+) (11)//scaffold_5:23047862-23048345(+) (10)	NA	Q494P0	Probable inorganic phosphate transporter 1-7	AT3G54700.1	phosphate transporter 1;7 	LOC_Os04g10750.4	"inorganic phosphate transporter, putative, expressed"	Medtr1g089530.1	Phosphate permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.141555.1.S1_s_at	A	A1TS	POPTR_0005s25070	POPTR_0005s25070 (11)	scaffold_5:23419563-23420636(+) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141558.1.S1_at	A	A1TS	POPTR_0001s17100	POPTR_0001s17100 (10)	scaffold_1:13971237-13971579(+) (10)	NA	Q9FNA9	Phospholipid:diacylglycerol acyltransferase 1	AT5G13640.1	phospholipid:diacylglycerol acyltransferase 	LOC_Os09g27210.1	"lecithine cholesterol acyltransferase, putative, expressed"	Medtr6g044030.1	Lecithin:cholesterol acyltransferase 	GO:0006629|lipid metabolic process	GO:0004607|phosphatidylcholine-sterol O-acyltransferase activity	NA
PtpAffx.141565.1.S1_at	A	A1TS	POPTR_0365s00200	POPTR_0365s00200 (9)	scaffold_365:5621-6148(+) (9)	POPTR_0005s10250 (8)	O31826	Putative acyl-CoA synthetase yngI	AT2G17650.1	AMP-dependent synthetase and ligase family protein 	LOC_Os03g04120.1	"AMP-binding enzyme, putative, expressed"	Medtr8g088410.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.141567.1.S1_at	A	A1TS	POPTR_0017s03560	POPTR_0017s03560 (10)	scaffold_17:2578050-2578101(-) (10)	NA	Q6ZPJ0	Testis-expressed sequence 2 protein	AT1G17820.1	Putative integral membrane protein conserved region (DUF2404) 	LOC_Os02g58110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141577.1.S1_at	A	A1TS	POPTR_0002s04160	POPTR_0002s04160 (11)	scaffold_2:2594383-2594668(+) (11)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT2G31280.1	conserved peptide upstream open reading frame 7 	LOC_Os01g64560.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141588.1.S1_s_at	A	A1TS	POPTR_0001s05100	POPTR_0001s05100 (9)	scaffold_1:3924310-3925256(+) (9)	NA	P80030	"Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic"	AT2G05990.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os08g23810.2	"enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed"	Medtr4g101180.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141614.1.S1_at	A	A1TS	POPTR_0014s04050	POPTR_0014s04050 (9)	scaffold_14:3221414-3221706(-) (9)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT5G42610.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141628.1.S1_at	A	A2TS	POPTR_0014s10880	POPTR_0228s00200 (11)//POPTR_0014s10880 (11)	scaffold_14:8122665-8122979(-) (11)//scaffold_228:17367-17681(+) (11)	NA	Q9FWX7	ABC transporter B family member 11	AT1G02520.1	P-glycoprotein 11 	LOC_Os01g18670.1	"MDR-like ABC transporter, putative, expressed"	Medtr1g105850.1	"AAA ATPase; ABC transporter, transmembrane region, type 1 "	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.141636.1.S1_at	A	A1MS	POPTR_0009s02430	POPTR_0009s02430 (10)	scaffold_9:3175295-3175850(-) (11)	NA	Q9FMR3	NAC domain-containing protein 90	AT3G44350.2	NAC domain containing protein 61 	LOC_Os05g37080.1	"No apical meristem protein, putative, expressed"	Medtr2g107600.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.141649.1.S1_at	A	A1TS	POPTR_0006s25360	POPTR_0006s25360 (9)	scaffold_6:23738970-23740265(-) (10)	NA	Q99685	Monoglyceride lipase	AT5G11650.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g10250.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr3g130390.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141654.1.S1_s_at	A	A1TS	POPTR_0001s47210	POPTR_0001s47210 (11)	scaffold_1:47491271-47491433(+) (11)	NA	P46256	"Fructose-bisphosphate aldolase, cytoplasmic isozyme 1"	AT4G26530.2	Aldolase superfamily protein 	LOC_Os06g40640.3	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g104310.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.141731.1.S1_at	A	A1TS	POPTR_0018s03590	POPTR_0018s03590 (11)	scaffold_18:3103033-3103487(+) (11)	NA	Q8LAW2	F-box protein AFR	AT2G24540.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os07g05880.2	"OsFBK18 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g133280.1	Cyclin-like F-box; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141732.1.S1_s_at	A	A1TS	POPTR_0001s02480	POPTR_0001s02480 (11)	scaffold_1:1925131-1925677(+) (11)	NA	NA	NA	AT2G35230.1	VQ motif-containing protein 	NA	NA	Medtr8g078580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141756.1.S1_at	A	A1TS	POPTR_0008s16130	POPTR_0008s16130 (10)	scaffold_8:10777005-10779329(+) (10)	NA	Q9FLG2	Magnesium transporter MRS2-2	AT5G64560.1	magnesium transporter 9 	LOC_Os03g53110.1	"CorA-like magnesium transporter protein, putative, expressed"	Medtr1g117730.1	"Mg2+ transporter protein, CorA-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14176.1.S1_at	A	A1TS	POPTR_0011s09650	POPTR_0011s09650 (11)	scaffold_11:12045052-12045389(+) (11)	NA	NA	NA	AT5G55850.3	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14176.3.S1_a_at	A	A1MS	POPTR_0011s09650	POPTR_0011s09650 (11)	scaffold_11:12044221-12044301(+) (11)//scaffold_11:12044311-12044391(+) (11)	NA	NA	NA	AT5G55850.3	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14176.3.S1_at	A	A1MS	POPTR_0011s09650	POPTR_0011s09650 (10)	scaffold_11:12044191-12044516(+) (10)	NA	NA	NA	AT5G55850.3	RPM1-interacting protein 4 (RIN4) family protein 	LOC_Os09g07920.1	"NOI protein, nitrate-induced, putative, expressed"	Medtr5g103680.1	Nitrate-induced NOI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141763.1.A1_at	A	A1TS	POPTR_0006s21980	POPTR_0006s21980 (9)	scaffold_6:21000259-21000479(+) (9)	NA	NA	NA	AT5G06370.1	NC domain-containing protein-related 	LOC_Os05g36910.1	"NC domain-containing protein, putative, expressed"	Medtr5g084100.1	NC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14180.1.S1_at	A	A1TS	POPTR_0002s19830	POPTR_0002s19830 (10)	scaffold_2:15739081-15739403(+) (11)	NA	Q94KD8	Probable beta-D-xylosidase 2	AT1G02640.1	beta-xylosidase 2 	LOC_Os11g44950.2	"glycosyl hydrolase family 3 protein, putative, expressed"	Medtr2g038840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.14183.2.S1_s_at	A	A1TS	POPTR_0001s40250	POPTR_0001s40250 (11)	scaffold_1:39621482-39621676(+) (11)	NA	Q02909	"Phosphoenolpyruvate carboxylase, housekeeping isozyme"	AT3G14940.1	phosphoenolpyruvate carboxylase 3 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
PtpAffx.141864.1.S1_at	A	A1TS	POPTR_0004s03320	POPTR_0004s03320 (10)	scaffold_4:2274772-2276185(-) (10)	NA	Q9M0Y6	"Putative PAP-specific phosphatase, mitochondrial"	AT4G05090.1	Inositol monophosphatase family protein 	LOC_Os07g37220.1	"inositol-1-monophosphatase, putative, expressed"	Medtr2g014230.1	"3(2),5 -bisphosphate nucleotidase HAL2 "	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
PtpAffx.14187.1.A1_at	A	A1TS	POPTR_0008s20270	POPTR_0008s20270 (11)	scaffold_8:14038872-14039291(-) (11)	NA	Q4L3J1	Putative TrmH family tRNA/rRNA methyltransferase	AT4G15520.1	tRNA/rRNA methyltransferase (SpoU) family protein 	LOC_Os05g04940.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr8g140030.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.14188.1.A1_at	A	A1TS	POPTR_0014s12590	POPTR_0014s12590 (11)	scaffold_14:9272970-9275280(-) (11)	NA	Q39129	"Thiosulfate sulfurtransferase, chloroplastic"	AT2G21045.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os02g01220.1	"rhodanese-like domain containing protein, putative, expressed"	Medtr2g021410.1	Rhodanese-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141946.1.S1_s_at	A	A1TS	POPTR_0007s05200	POPTR_0007s05200 (11)	scaffold_7:3351052-3353627(+) (11)	NA	Q7T3H7	Mediator of RNA polymerase II transcription subunit 18	AT2G22370.1	unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g10050.1	expressed protein	Medtr5g047410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14196.1.S1_s_at	A	A1TS	POPTR_0019s11110	POPTR_0019s11110 (11)	scaffold_19:12506862-12507018(+) (11)	NA	NA	NA	AT1G72020.1	unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g35300.1	"SLL1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14196.1.S1_x_at	A	A1TS	POPTR_0019s11110	POPTR_0019s11110 (10)	scaffold_19:12506862-12507106(+) (10)	NA	NA	NA	AT1G72020.1	unknown protein; Has 52 Blast hits to 52 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g35300.1	"SLL1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141964.1.S1_s_at	A	A1TS	POPTR_0002s10440	POPTR_0002s10440 (11)	scaffold_2:7529776-7530026(-) (11)	NA	NA	NA	AT5G49710.3	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g54080.2	expressed protein	Medtr5g074990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141980.1.S1_at	A	A1TS	POPTR_0008s07000	POPTR_0008s07000 (11)	scaffold_8:4238155-4238769(+) (11)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr3g094070.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.141994.1.S1_at	A	A1TS	POPTR_0013s11380	POPTR_0013s11380 (11)	scaffold_13:12055055-12055463(-) (11)	NA	Q42538	Serine acetyltransferase 5	AT5G56760.1	serine acetyltransferase 1;1 	LOC_Os05g45710.1	"serine acetyltransferase protein, putative, expressed"	Medtr5g103050.1	"Serine acetyltransferase, N-terminal; Trimeric LpxA-like "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006535|cysteine biosynthetic process from serine	GO:0009001|serine O-acetyltransferase activity	GO:0005737|cytoplasm
PtpAffx.142.1.S1_s_at	A	A2TS	POPTR_0001s45750	POPTR_0001s45750 (11)//POPTR_0011s15180 (11)	scaffold_1:46292683-46292737(+) (11)//scaffold_11:17313703-17313757(-) (11)	NA	P49793	Nuclear pore complex protein Nup98	AT1G10390.2	Nucleoporin autopeptidase 	LOC_Os12g06890.1	"OsNucAP3 - Putative Nucleoporin Autopeptidase homologue, expressed"	Medtr5g105600.1	"Peptidase S59, nucleoporin "	GO:0006810|transport	NA	GO:0005643|nuclear pore
PtpAffx.1420.1.A1_s_at	A	A1TS	POPTR_0002s04410	POPTR_0002s04410 (11)	scaffold_2:2762033-2762448(-) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.1420.1.A1_x_at	A	A1TS	POPTR_0002s04410	POPTR_0002s04410 (11)	scaffold_2:2762046-2762466(-) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.1420.5.A1_a_at	A	A1TS	POPTR_0015s07560	POPTR_0015s07560 (11)	scaffold_15:8846870-8846948(+) (11)	NA	NA	NA	AT1G18850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g02170.2	expressed protein	Medtr3g113570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1420.5.A1_at	A	A1TS	POPTR_0015s07560	POPTR_0015s07560 (11)	scaffold_15:8846628-8847098(+) (11)	NA	NA	NA	AT1G18850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g02170.2	expressed protein	Medtr3g113570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1420.6.A1_at	A	A1TS	POPTR_0005s26990	POPTR_0005s26990 (11)	scaffold_5:24800961-24800997(+) (11)	NA	NA	NA	AT1G76200.1	unknown protein; Has 96 Blast hits to 96 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 47; Plants - 38; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os05g03150.1	expressed protein	Medtr4g100950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142009.1.S1_at	A	A1MS	POPTR_0006s03140	POPTR_0006s03140 (11)	scaffold_6:1988220-1988464(+) (11)	POPTR_0006s03130 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142075.1.S1_at	A	A1TS	POPTR_0007s00760	POPTR_0007s00760 (9)	scaffold_7:373614-381309(-) (9)	POPTR_0007s00740 (8)	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05680.1	Uridine diphosphate glycosyltransferase 74E2 	LOC_Os09g34250.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr4g137110.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14209.1.A1_at	A	A1MS	POPTR_0015s03740	POPTR_0015s03740 (11)	scaffold_15:3565173-3565583(-) (11)	NA	NA	NA	AT1G48840.1	Plant protein of unknown function (DUF639) 	LOC_Os10g03830.1	expressed protein	Medtr6g028160.2	Protein of unknown function DUF639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142106.2.S1_a_at	A	A1TS	POPTR_0014s12890	POPTR_0014s12890 (11)	scaffold_14:9499714-9499936(+) (11)	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G62970.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os12g35320.1	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr2g025150.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.142106.3.S1_at	A	A1MS	POPTR_0014s12890	POPTR_0014s12890 (11)	scaffold_14:9498670-9499967(+) (11)	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G62970.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os12g35320.1	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr2g025150.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.142161.1.S1_s_at	A	A2TS	POPTR_0008s08130	POPTR_0008s08130 (11)//POPTR_0010s18130 (11)	scaffold_10:16492042-16493382(+) (11)//scaffold_8:5065599-5066980(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT1G79430.2	Homeodomain-like superfamily protein 	LOC_Os02g07770.1	"Myb transcription factor, putative"	Medtr2g107820.1	"Peptidase M22, glycoprotease; Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142163.1.S1_s_at	A	A1TS	POPTR_0011s16450	POPTR_0011s16450 (11)	scaffold_11:18361971-18363277(-) (11)	NA	NA	NA	AT2G34780.2	maternal effect embryo arrest 22 	LOC_Os01g56290.1	expressed protein	AC147501_20.1	hypothetical protein AC147501.9 80184-71093 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
PtpAffx.142171.1.S1_s_at	A	A1TS	POPTR_0005s09700	POPTR_0005s09700 (11)	scaffold_5:6785992-6786200(-) (11)	NA	Q8T2I8	Serine/threonine-protein kinase sepA	AT3G13530.1	mitogen-activated protein kinase kinase kinase 7 	LOC_Os04g56530.1	"STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g100710.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14222.1.A1_at	A	A1TS	POPTR_0006s25290	POPTR_0006s25290 (11)	scaffold_6:23696361-23696808(-) (11)	NA	P40235	Casein kinase I homolog hhp1	AT2G25760.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g008170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.142260.1.S1_at	A	A1MS	POPTR_0019s13210	POPTR_0019s13210 (10)	scaffold_19:14169220-14169427(+) (10)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT4G03510.2	RING membrane-anchor 1 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142301.1.S1_s_at	A	A1TS	POPTR_0010s23350	POPTR_0010s23350 (11)	scaffold_10:19963676-19964565(+) (11)	NA	Q9SS48	"Glycerol-3-phosphate dehydrogenase SDP6, mitochondrial"	AT3G10370.1	FAD-dependent oxidoreductase family protein 	LOC_Os04g14790.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr1g068510.1	FAD-dependent glycerol-3-phosphate dehydrogenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.142310.1.S1_at	A	A1TS	POPTR_0002s20120	POPTR_0002s20120 (11)	scaffold_2:16069111-16069490(+) (11)	NA	Q8VYF4	Probable galacturonosyltransferase-like 7	AT3G62660.1	galacturonosyltransferase-like 7 	LOC_Os03g18890.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g132630.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.142314.1.S1_at	A	A1TS	POPTR_0001s43080	POPTR_0001s43080 (9)	scaffold_1:43169031-43169484(+) (9)	NA	O65351	Subtilisin-like protease	AT4G20430.1	Subtilase family protein 	LOC_Os01g56320.1	"OsSub4 - Putative Subtilisin homologue, expressed"	Medtr4g137790.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Protease-associated PA; "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.142326.1.S1_at	A	A1TS	POPTR_0015s12700	POPTR_0015s12700 (11)	scaffold_15:12929290-12929834(-) (11)	NA	O31826	Putative acyl-CoA synthetase yngI	AT5G16370.1	acyl activating enzyme 5 	LOC_Os04g57850.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084090.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.142329.1.S1_s_at	A	A1TS	POPTR_0006s02200	POPTR_0006s02200 (11)	scaffold_6:1446292-1446725(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
PtpAffx.142349.1.S1_at	A	A1TS	POPTR_0014s10960	POPTR_0014s10960 (11)	scaffold_14:8183749-8184571(+) (11)	NA	Q9S7P5	Squamosa promoter-binding-like protein 12	AT3G60030.1	squamosa promoter-binding protein-like 12 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.142358.1.S1_at	A	A1TS	POPTR_0017s04880	POPTR_0017s04880 (11)	scaffold_17:3752516-3752558(+) (11)	NA	O22870	"Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplastic"	AT2G43560.1	FKBP-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g42850.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr4g092670.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.142364.1.S1_at	A	A1TS	POPTR_0006s19830	POPTR_0006s19830 (10)	scaffold_6:18847489-18849399(+) (10)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G57970.2	DNA glycosylase superfamily protein 	LOC_Os04g42290.1	"methyladenine glycosylase, putative, expressed"	Medtr8g145370.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.142367.1.S1_at	A	A1TS	POPTR_0018s06120	POPTR_0018s06120 (10)	scaffold_18:5764415-5764967(-) (10)	NA	NA	NA	AT3G24490.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os01g52090.2	"transcription factor like protein, putative, expressed"	AC234703_9.1	"Myb, DNA-binding AC234703.1 59278-57295 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14238.5.A1_a_at	A	A1TS	POPTR_0006s05040	POPTR_0006s05040 (11)	scaffold_6:3505610-3506091(-) (11)	NA	NA	NA	AT1G01170.2	Protein of unknown function (DUF1138) 	LOC_Os06g02420.1	"ATOZI1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142385.1.S1_at	A	A1TS	POPTR_0012s02870	POPTR_0012s02870 (11)	scaffold_12:2318014-2318294(-) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT3G49430.2	SER/ARG-rich protein 34A 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr3g122850.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.142385.1.S1_s_at	A	A1MS	POPTR_0012s02870	POPTR_0012s02870 (11)	scaffold_12:2318064-2319262(-) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT3G49430.2	SER/ARG-rich protein 34A 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr3g122850.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.142388.1.S1_at	A	A1TS	POPTR_0003s17440	POPTR_0003s17440 (11)	scaffold_3:16775051-16778185(+) (11)	NA	Q54LQ6	Probable inosine triphosphate pyrophosphatase	AT4G13720.1	Inosine triphosphate pyrophosphatase family protein 	LOC_Os10g31940.1	"inosine triphosphate pyrophosphatase, putative, expressed"	AC235749_26.1	Ham1-like protein AC235749.1 82849-86143 E EGN_Mt090430 200	NA	GO:0016787|hydrolase activity	NA
PtpAffx.142391.1.S1_at	A	A1TS	POPTR_0005s05440	POPTR_0005s05440 (11)	scaffold_5:3602905-3603267(+) (11)	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142399.1.S1_s_at	A	A1TS	POPTR_0015s04900	POPTR_0015s04900 (11)	scaffold_15:5136128-5136647(+) (11)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT3G17850.1	Protein kinase superfamily protein 	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14241.1.A1_at	A	A1TS	POPTR_0016s02510	POPTR_0016s02510 (11)	scaffold_16:1241079-1241576(+) (11)	NA	Q9FYE1	Metacaspase-9	AT5G04200.1	metacaspase 9 	LOC_Os11g04010.1	"ICE-like protease p20 domain containing protein, putative, expressed"	Medtr7g104790.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.142418.2.A1_at	A	A1MS	POPTR_0005s20600	POPTR_0005s20600 (11)	scaffold_5:19640311-19640411(+) (11)	NA	Q8CFV9	Riboflavin kinase	AT4G21470.1	riboflavin kinase/FMN hydrolase 	LOC_Os10g32730.1	"haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed"	Medtr4g125160.1	"HAD-superfamily hydrolase subfamily IA, variant 3; Epoxide hydrolase N-terminal domain-like phosphatase "	GO:0009231|riboflavin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0008531|riboflavin kinase activity	NA
PtpAffx.142453.1.A1_at	A	A1TS	POPTR_0015s06780	POPTR_0015s06780 (11)	scaffold_15:7817856-7818409(+) (11)	NA	NA	NA	AT5G20170.1	RNA polymerase II transcription mediators 	LOC_Os12g44140.1	expressed protein	Medtr8g119840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142466.1.A1_s_at	A	A1TS	POPTR_0018s13780	POPTR_0018s13780 (11)	scaffold_18:14054945-14055462(+) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT3G23750.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr3g104610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.14248.1.S1_at	A	A1TS	POPTR_0013s13240	POPTR_0013s13240 (11)	scaffold_13:13782584-13782923(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT4G12490.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46810.1	"LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106200.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142561.1.A1_at	A	A1TA	POPTR_0005s25800	POPTR_0005s25800 (11)	scaffold_5:23980641-23981152(+) (11)	NA	P93024	Auxin response factor 5	AT1G19850.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os04g56850.1	"auxin response factor, putative, expressed"	Medtr8g132840.1	Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.142582.1.A1_at	A	A1TS	POPTR_0019s14200	POPTR_0019s14200 (11)	scaffold_19:14942729-14943286(-) (11)	NA	NA	NA	AT4G03260.2	Outer arm dynein light chain 1 protein 	LOC_Os07g01550.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.142585.1.A1_at	A	A1TA	POPTR_0007s12130	POPTR_0007s12130 (11)	scaffold_7:12456693-12457250(-) (11)	NA	O64827	Histone-lysine N-methyltransferase SUVR5	AT2G23740.2	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding 	LOC_Os02g47900.1	"SET domain protein SDG117, putative, expressed"	Medtr5g018800.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.142603.1.A1_s_at	A	A1TS	POPTR_0013s07050	POPTR_0013s07050 (11)	scaffold_13:5755001-5755146(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os10g17260.1	"cytochrome P450, putative, expressed"	Medtr3g037120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.142664.1.A1_at	A	A1TS	POPTR_0010s20060	POPTR_0010s20060 (11)	scaffold_10:17809982-17810486(-) (11)	NA	O20252	"Sedoheptulose-1,7-bisphosphatase, chloroplastic"	AT3G55800.1	sedoheptulose-bisphosphatase 	LOC_Os04g16680.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr3g093130.1	"Inositol phosphatase/fructose-1,6-bisphosphatase; Glycoside hydrolase, family 5 "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.142669.1.S1_s_at	A	A1TS	POPTR_0013s06280	POPTR_0013s06280 (11)	scaffold_13:4697831-4698862(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142674.1.S1_at	A	A1TS	POPTR_0001s41040	POPTR_0001s41040 (11)	scaffold_1:40685075-40688326(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os01g10430.1	"protein kinase family protein, putative, expressed"	Medtr2g100640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.142690.2.S1_s_at	A	A2TS	POPTR_0013s08240	POPTR_0013s08240 (11)//POPTR_0019s08260 (11)	scaffold_13:7285151-7285378(+) (11)//scaffold_19:9741197-9741428(-) (11)	NA	Q9CYI4	Putative RNA-binding protein Luc7-like 1	AT3G03340.1	LUC7 related protein 	LOC_Os03g62640.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142717.1.S1_at	A	A1TS	POPTR_0008s20980	POPTR_0008s20980 (11)	scaffold_8:15022375-15024408(-) (11)	NA	NA	NA	AT3G21465.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G15640.1); Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g47201.1	"adenyl cyclase, putative, expressed"	Medtr3g092800.1	"adenyl cyclase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142752.1.S1_at	A	A1TS	POPTR_0003s06650	POPTR_0003s06650 (11)	scaffold_3:8162759-8163093(-) (11)	NA	O54922	Exocyst complex component 7	AT1G72470.1	exocyst subunit exo70 family protein D1 	LOC_Os08g35470.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr8g109240.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.142779.2.S1_at	A	A1TS	POPTR_0001s13880	POPTR_0001s13880 (11)	scaffold_1:10941971-10943896(+) (11)	NA	Q8GZ43	RanBP2-type zinc finger protein At1g67325	AT1G67325.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os08g41010.2	"zinc finger family protein, putative, expressed"	Medtr3g103960.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.14280.1.S1_a_at	A	A1TS	POPTR_0009s13670	POPTR_0009s13670 (11)	scaffold_9:10856710-10857516(+) (11)	NA	Q6WWW4	E3 ubiquitin-protein ligase UPL3	AT4G38600.1	HEAT repeat ;HECT-domain (ubiquitin-transferase) 	LOC_Os02g01170.1	"HECT-domain domain containing protein, expressed"	Medtr4g098630.1	HECT; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
PtpAffx.142804.1.S1_at	A	A1TS	POPTR_0007s01940	POPTR_0007s01940 (11)	scaffold_7:1104096-1104619(+) (11)	NA	Q9SZL8	Protein FAR1-RELATED SEQUENCE 5	AT3G07500.1	Far-red impaired responsive (FAR1) family protein 	LOC_Os03g15040.2	"FAR1 family protein, expressed"	Medtr2g118460.1	FAR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142812.1.S1_s_at	A	A1TS	POPTR_0008s09380	POPTR_0008s09380 (11)	scaffold_8:5810558-5811338(+) (11)	NA	Q9FZE0	Beta-glucosidase 40	AT1G26560.1	beta glucosidase 40 	LOC_Os03g11420.1	"Os3bglu6 - beta-glucosidase/beta-fucosidase/beta-galactosidase, expressed"	Medtr4g115640.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.14282.1.S1_at	A	A1TS	POPTR_0004s20980	POPTR_0004s20980 (11)	scaffold_4:20316794-20318151(-) (11)	NA	Q42965	Bifunctional nitrilase/nitrile hydratase NIT4A	AT5G22300.1	nitrilase 4 	LOC_Os02g42350.1	"nitrilase, putative, expressed"	Medtr1g146400.1	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 	GO:0006807|nitrogen compound metabolic process	"GO:0016810|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"""	NA
PtpAffx.142827.1.S1_a_at	A	A3TS	POPTR_0006s28090	POPTR_0006s28090 (11)//POPTR_0018s02670 (11)//POPTR_0018s02680 (11)	scaffold_18:2399227-2399611(-) (11)//scaffold_18:2407268-2407653(-) (11)//scaffold_6:25906935-25907369(-) (11)	NA	Q9SZ53	Probable protein phosphatase 2C 60	AT4G31860.1	Protein phosphatase 2C family protein 	LOC_Os02g08364.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142827.2.S1_at	A	A1TS	POPTR_0006s28090	POPTR_0006s28090 (11)	scaffold_6:25906570-25906998(-) (11)	NA	Q9SZ53	Probable protein phosphatase 2C 60	AT4G31860.1	Protein phosphatase 2C family protein 	LOC_Os02g08364.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138480.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142841.1.S1_s_at	A	A1TS	POPTR_0006s21440	POPTR_0006s21440 (11)	scaffold_6:20505594-20506010(+) (11)	NA	NA	NA	AT3G11690.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g104580.1	"pollen preferential protein^, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142854.1.S1_s_at	A	A1TS	POPTR_0012s02220	POPTR_0012s02220 (11)	scaffold_12:1856629-1856734(+) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14286.2.A1_a_at	A	A1TS	POPTR_0014s11930	POPTR_0014s11930 (11)	scaffold_14:8834268-8834640(+) (11)	NA	NA	NA	AT4G13030.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g19280.1	expressed protein	Medtr7g062150.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142865.1.S1_at	A	A1TS	POPTR_0011s11710	POPTR_0011s11710 (10)	scaffold_11:14470949-14471393(-) (10)	NA	O61122	Serine/threonine-protein kinase svkA	AT3G15220.1	Protein kinase superfamily protein 	LOC_Os07g32400.1	"STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.142909.1.S1_s_at	A	A1TS	POPTR_0003s10660	POPTR_0003s10660 (11)	scaffold_3:11568522-11570616(-) (11)	NA	NA	NA	AT4G25170.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os02g44010.2	expressed protein	Medtr7g040860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142932.1.S1_at	A	A1TS	POPTR_0006s05440	POPTR_0006s05440 (11)	scaffold_6:3846023-3846333(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142991.1.S1_at	A	A1TS	POPTR_0014s11850	POPTR_0014s11850 (11)	scaffold_14:8775459-8775835(-) (11)	NA	NA	NA	AT5G38700.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible, LP.12 twelve leaves visible; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g19070.1	"long cell-linked locus protein, putative, expressed"	Medtr1g107490.1	"long cell-linked locus protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.142992.1.S1_at	A	A1TS	POPTR_0008s19690	POPTR_0008s19690 (11)	scaffold_8:13582092-13582175(+) (11)	NA	O04536	Probable galacturonosyltransferase-like 9	AT1G70090.2	glucosyl transferase family 8 	LOC_Os02g50600.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr5g037690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.142992.1.S1_s_at	A	A1TS	POPTR_0008s19690	POPTR_0008s19690 (11)	scaffold_8:13582167-13582427(+) (11)	NA	O04536	Probable galacturonosyltransferase-like 9	AT1G70090.2	glucosyl transferase family 8 	LOC_Os02g50600.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr5g037690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.142994.1.S1_at	A	A1TS	POPTR_0011s17210	POPTR_0011s17210 (11)	scaffold_11:18791489-18791956(-) (11)	NA	NA	NA	AT5G56250.1	hapless 8 	LOC_Os04g39560.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143.1.S1_at	A	A1MS	POPTR_0001s36210	POPTR_0001s36210 (9)	scaffold_1:34721231-34721559(-) (9)	NA	NA	NA	AT3G27330.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os08g02850.1	"zinc finger family protein, putative, expressed"	Medtr2g034480.1	Protein of unknown function DUF23 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143018.1.S1_at	A	A1TS	POPTR_0009s07660	POPTR_0009s07660 (9)	scaffold_9:7107422-7108640(-) (9)	NA	O80873	Uncharacterized protein At1g07170/At2g30000	AT2G30000.1	PHF5-like protein 	LOC_Os05g30410.1	"PHF5-like protein domain containing protein, expressed"	Medtr4g024080.1	Protein of unknown function UPF0123 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14302.1.S1_at	A	A1TS	POPTR_0012s08760	POPTR_0012s08760 (11)	scaffold_12:9842171-9842569(+) (11)	NA	O61967	Protein lap1	AT3G11330.1	plant intracellular ras group-related LRR 9 	LOC_Os04g40080.1	"leucine rich repeat containing protein, expressed"	Medtr3g114800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.143031.1.S1_at	A	A1TS	POPTR_0009s14160	POPTR_0009s14160 (10)	scaffold_9:11159847-11160466(-) (10)	NA	Q9LEL6	(RS)-norcoclaurine 6-O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr3g105610.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.143041.1.S1_s_at	A	A1TS	POPTR_0012s09940	POPTR_0012s09940 (11)	scaffold_12:10821480-10822072(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os08g41880.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g109230.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.143059.1.A1_at	A	A1TS	POPTR_0015s06250	POPTR_0015s06250 (11)	scaffold_15:6632495-6633502(+) (11)	NA	NA	NA	AT1G48950.1	C3HC zinc finger-like  	LOC_Os01g42080.1	"zinc ion binding protein, putative, expressed"	Medtr8g116510.1	"Zinc finger, C3HC-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1431.2.S1_at	A	A1TS	POPTR_0014s02260	POPTR_0014s02260 (11)	scaffold_14:1914872-1915350(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr5g016440.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14313.1.S1_at	A	A1TS	POPTR_0010s06150	POPTR_0010s06150 (9)	scaffold_10:7579936-7582298(+) (9)	NA	Q9VSH4	Cleavage and polyadenylation specificity factor subunit CG7185	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.143144.1.A1_at	A	A1TS	POPTR_0002s21860	POPTR_0002s21860 (10)	scaffold_2:18558407-18559465(+) (10)	NA	NA	NA	AT1G04960.1	Protein of unknown function (DUF1664) 	LOC_Os09g30478.1	expressed protein	Medtr3g106460.1	Protein of unknown function DUF1664 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143162.1.S1_at	A	A1TS	POPTR_0011s09500	POPTR_0011s09500 (10)	scaffold_11:11793495-11794712(+) (10)	NA	Q9FLP0	65-kDa microtubule-associated protein 1	AT5G55230.1	microtubule-associated proteins 65-1 	LOC_Os06g20370.1	"microtubule associated protein, putative, expressed"	Medtr5g101260.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14318.1.A1_a_at	A	A1TS	POPTR_0014s17130	POPTR_0014s17130 (11)	scaffold_14:13289056-13290714(+) (11)	NA	Q5ZLS7	Putative oxidoreductase GLYR1	AT3G25530.1	glyoxylate reductase 1 	LOC_Os02g35500.1	"NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed"	Medtr4g125730.1	2-hydroxy-3-oxopropionate reductase 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.143207.1.A1_at	A	A1TS	POPTR_0012s12380	POPTR_0012s12380 (11)	scaffold_12:12665797-12666311(-) (11)	NA	Q949Q1	Probable galacturonosyltransferase 11	AT1G18580.1	galacturonosyltransferase 11 	LOC_Os03g30000.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr2g018990.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.143215.1.S1_at	A	A1TS	POPTR_0004s15600	POPTR_0004s15600 (11)	scaffold_4:16207526-16207883(+) (11)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT5G42650.1	allene oxide synthase 	LOC_Os03g55800.1	"cytochrome P450, putative, expressed"	Medtr4g093070.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143216.1.A1_at	A	A1TS	POPTR_0001s45900	POPTR_0001s45900 (11)	scaffold_1:46409482-46409930(+) (11)	NA	Q9SV83	Probable receptor-like protein kinase At4g10390	AT1G33260.2	Protein kinase superfamily protein 	LOC_Os04g45730.1	"protein kinase domain containing protein, expressed"	Medtr4g130010.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14324.1.S1_at	A	A1TS	POPTR_0001s10650	POPTR_0001s10650 (11)	scaffold_1:8283025-8283463(-) (11)	POPTR_0003s14030 (6)	NA	NA	AT4G23890.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3252 (InterPro:IPR021659); Has 287 Blast hits to 287 proteins in 81 species: Archae - 0; Bacteria - 118; Metazoa - 12; Fungi - 6; Plants - 40; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). "	LOC_Os07g09800.1	expressed protein	Medtr8g034390.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14325.2.A1_a_at	A	A1TS	POPTR_0010s12370	POPTR_0010s12370 (11)	scaffold_10:12392490-12393018(-) (11)	NA	Q5SLW9	Chaperone protein dnaJ 1	AT1G71000.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g42190.1	"heat shock protein DnaJ, putative, expressed"	Medtr7g138160.1	"Glycoside hydrolase, family 11; Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.143284.2.A1_at	A	A1TS	POPTR_0008s01090	POPTR_0008s01090 (9)	scaffold_8:513339-513628(+) (9)	NA	Q0J709	"Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic"	AT1G16880.1	uridylyltransferase-related 	LOC_Os08g14440.1	"uridylyltransferase-related, putative, expressed"	Medtr4g022000.1	"uridylyltransferase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14329.1.S1_at	A	A1TS	POPTR_0019s02270	POPTR_0019s02270 (9)	scaffold_19:2109773-2110222(+) (9)	NA	Q94A64	F-box protein At5g03970	AT5G03970.1	F-box associated ubiquitination effector family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143325.1.S1_at	A	A3MS	POPTR_0019s08780	POPTR_0019s08780 (9)//POPTR_0019s08890 (9)//POPTR_0780s00200 (9)	scaffold_19:10336480-10336623(-) (9)//scaffold_19:10460452-10460586(-) (9)//scaffold_780:3826-3969(-) (9)	POPTR_0019s14400 (8)//POPTR_0019s14380 (8)//POPTR_0019s14340 (7)//POPTR_0019s14310 (6)	Q8VZG8	Probable LRR receptor-like serine/threonine-protein kinase At4g08850	AT4G08850.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os02g34790.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g093090.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.143335.1.S1_at	A	A2TS	POPTR_0014s11240	POPTR_0014s11240 (10)//POPTR_0746s00200 (10)	scaffold_14:8360757-8361684(+) (10)//scaffold_746:1034-1961(+) (10)	NA	Q8VYZ3	Probable pectinesterase 53	AT5G19730.1	Pectin lyase-like superfamily protein 	LOC_Os12g37660.1	"pectinesterase, putative, expressed"	Medtr1g106250.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.143342.1.S1_at	A	A1TS	POPTR_0005s23050	POPTR_0005s23050 (11)	scaffold_5:21883108-21883675(-) (11)	NA	Q9SY07	"Pentatricopeptide repeat-containing protein At4g02820, mitochondrial"	AT4G02820.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g34340.1	"pentatricopeptide, putative, expressed"	Medtr1g086450.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143354.1.S1_s_at	A	A1TS	POPTR_0018s03370	POPTR_0018s03370 (11)	scaffold_18:2977482-2977761(+) (11)	NA	Q9SB75	Probable xyloglucan glycosyltransferase 5	AT4G31590.1	Cellulose-synthase-like C5 	LOC_Os08g15420.1	"CSLC3 - cellulose synthase-like family C, expressed"	Medtr3g133150.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143356.1.S1_s_at	A	A1TS	POPTR_0018s01390	POPTR_0018s01390 (11)	scaffold_18:1341954-1342219(+) (11)	NA	NA	NA	AT5G11420.1	"Protein of unknown function, DUF642 "	LOC_Os01g42520.1	expressed protein	Medtr1g013340.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143383.1.S1_at	A	A1MS	POPTR_0010s08720	POPTR_0010s08720 (9)	scaffold_10:9593803-9594302(+) (9)	NA	NA	NA	AT5G43630.1	zinc knuckle (CCHC-type) family protein 	NA	NA	Medtr5g007190.1	"Zinc finger, CCHC-type; Plus-3 "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.143388.1.S1_at	A	A1TS	POPTR_0011s02850	POPTR_0011s02850 (11)	scaffold_11:2798824-2799189(-) (11)	NA	NA	NA	AT1G29350.1	Kinase-related protein of unknown function (DUF1296) 	LOC_Os05g49180.1	"protein of unknown function DUF1296 domain containing protein, expressed"	Medtr4g136700.1	Protein of unknown function DUF1296 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14340.2.S1_a_at	A	A2TS	POPTR_0001s24570	POPTR_0001s24570 (11)//POPTR_0009s03530 (11)	scaffold_1:23827687-23827735(+) (11)//scaffold_9:4155112-4155160(+) (11)	NA	Q94B55	Putative E3 ubiquitin-protein ligase XBAT31	AT2G28840.1	XB3 ortholog 1 in Arabidopsis thaliana 	LOC_Os05g02130.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	AC146807_5.2	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14340.3.S1_a_at	A	A1TS	POPTR_0009s03530	POPTR_0009s03530 (11)	scaffold_9:4155386-4155756(+) (11)	NA	Q94B55	Putative E3 ubiquitin-protein ligase XBAT31	AT2G28840.1	XB3 ortholog 1 in Arabidopsis thaliana 	LOC_Os05g02130.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	AC146807_5.2	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14340.3.S1_at	A	A1MS	POPTR_0009s03530	POPTR_0009s03530 (10)	scaffold_9:4155403-4155698(+) (10)	NA	Q94B55	Putative E3 ubiquitin-protein ligase XBAT31	AT2G28840.1	XB3 ortholog 1 in Arabidopsis thaliana 	LOC_Os05g02130.1	"ankyrin repeat domain-containing protein 28, putative, expressed"	AC146807_5.2	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143418.1.S1_at	A	A1TS	POPTR_0009s16090	POPTR_0009s16090 (9)	scaffold_9:12317543-12318493(-) (9)	NA	Q5R4J1	"Tryptophanyl-tRNA synthetase, cytoplasmic"	AT3G04600.3	Nucleotidylyl transferase superfamily protein 	LOC_Os12g35570.1	"tRNA synthetase, putative, expressed"	AC202489_14.1	"Aminoacyl-tRNA synthetase, class Ib AC202489.10 90501-83889 E EGN_Mt090430 200"	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.143460.1.S1_at	A	A1TS	POPTR_0002s17390	POPTR_0002s17390 (11)	scaffold_2:13150475-13151664(-) (11)	NA	NA	NA	AT2G46550.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01240.3); Has 72 Blast hits to 68 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os08g30930.1	expressed protein	Medtr3g123640.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14349.1.S1_at	A	A1TS	POPTR_0013s04090	POPTR_0013s04090 (9)	scaffold_13:2722859-2723326(+) (9)	NA	NA	NA	AT5G28640.1	SSXT family protein 	LOC_Os03g52320.1	"GRF-interacting factor 1, putative, expressed"	Medtr1g094100.1	SSXT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143496.1.S1_at	A	A1TS	POPTR_0002s26100	POPTR_0002s26100 (11)	scaffold_2:23070576-23071046(-) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT4G28600.1	no pollen germination related 2 	LOC_Os10g33290.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g090090.2	"NPGR2 ; calmodulin binding ta, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143501.1.S1_at	A	A1TS	POPTR_0014s02630	POPTR_0014s02630 (11)	scaffold_14:2188376-2188902(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67090.1	Subtilisin-like serine endopeptidase family protein 	LOC_Os05g36010.1	"OsSub47 - Putative Subtilisin homologue, expressed"	Medtr7g145930.1	"Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.143505.1.S1_at	A	A1TS	POPTR_0011s08260	POPTR_0011s08260 (10)	scaffold_11:1873575-1873608(-) (10)//scaffold_11:9365103-9365136(+) (10)	NA	NA	NA	AT2G34585.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os07g05950.1	expressed protein	Medtr2g024490.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143510.1.S1_s_at	A	A1TS	POPTR_0003s11530	POPTR_0003s11530 (11)	scaffold_3:12298661-12299037(+) (11)	NA	NA	NA	AT1G12330.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12900.1); Has 249 Blast hits to 249 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 14; Plants - 217; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). 	LOC_Os03g14500.1	expressed protein	Medtr4g156150.1	"Peptidase M14, carboxypeptidase A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143511.1.S1_at	A	A1TS	POPTR_0014s12330	POPTR_0014s12330 (11)	scaffold_14:9110313-9111960(-) (11)	NA	P48768	Sodium/calcium exchanger 2	AT2G47600.1	magnesium/proton exchanger 	LOC_Os11g43860.2	"sodium/calcium exchanger protein, putative, expressed"	Medtr1g108330.1	Sodium/calcium exchanger membrane region 	NA	NA	GO:0016021|integral to membrane
PtpAffx.143519.1.S1_at	A	A1TS	POPTR_0014s06260	POPTR_0014s06260 (11)	scaffold_14:4772330-4772838(-) (11)	NA	O04887	Pectinesterase 2	AT2G45220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g21034.1	"pectinesterase, putative, expressed"	Medtr3g040380.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.143538.1.S1_at	A	A1TS	POPTR_0002s22530	POPTR_0002s22530 (11)	scaffold_2:19283764-19284174(-) (11)	NA	Q8L735	"Isoamylase 2, chloroplastic"	AT1G03310.1	debranching enzyme 1 	LOC_Os05g32710.1	"Alpha amylase, catalytic domain containing protein, expressed"	Medtr4g160980.1	"Alpha amylase, catalytic region; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.143538.2.A1_at	A	A1TS	POPTR_0002s22530	POPTR_0002s22530 (11)	scaffold_2:19283065-19283534(-) (11)	NA	Q8L735	"Isoamylase 2, chloroplastic"	AT1G03310.1	debranching enzyme 1 	LOC_Os05g32710.1	"Alpha amylase, catalytic domain containing protein, expressed"	Medtr4g160980.1	"Alpha amylase, catalytic region; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.143539.1.S1_at	A	A1TS	POPTR_0007s00740	POPTR_0007s00740 (11)	scaffold_7:374255-374573(-) (11)	NA	P0C7P7	Uncharacterized UDP-glucosyltransferase At1g05670	AT1G05675.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os09g34230.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr7g092470.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143576.1.S1_s_at	A	A1TS	POPTR_0003s20130	POPTR_0003s20130 (11)	scaffold_3:18720090-18720207(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os07g46670.3	"early response to dehydration 15, putative, expressed"	Medtr3g026140.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143601.1.S1_a_at	A	A1TS	POPTR_0001s07110	POPTR_0001s07110 (11)	scaffold_1:5403073-5403608(-) (11)	NA	Q5R7B0	Ribonuclease P protein subunit p29	AT2G43190.2	ribonuclease P family protein 	LOC_Os05g39530.1	"ribonuclease P family protein, putative, expressed"	Medtr5g007980.1	Ribonuclease P subunit 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing||GO:0008033|tRNA processing||GO:0006379|mRNA cleavage	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	GO:0030677|ribonuclease P complex||GO:0000172|ribonuclease MRP complex
PtpAffx.143610.1.S1_at	A	A1TS	POPTR_0005s24650	POPTR_0005s24650 (10)	scaffold_5:23117152-23117598(-) (10)	NA	Q5SRX1	TOM1-like protein 2	AT1G06210.1	ENTH/VHS/GAT family protein 	LOC_Os10g42724.1	"VHS and GAT domain containing protein, expressed"	Medtr5g007600.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.143610.2.S1_a_at	A	A2TS	POPTR_0002s03910	POPTR_0002s03910 (11)//POPTR_0005s24650 (11)	scaffold_2:2450588-2450906(+) (11)//scaffold_5:23120156-23120474(-) (11)	NA	Q54GH3	Target of Myb protein 1	AT1G06210.1	ENTH/VHS/GAT family protein 	LOC_Os10g42724.1	"VHS and GAT domain containing protein, expressed"	Medtr5g007600.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
PtpAffx.14362.1.A1_s_at	A	A9TS	POPTR_0001s22830	POPTR_0001s22910 (11)//POPTR_0001s22960 (11)//POPTR_0001s22870 (11)//POPTR_0001s22830 (11)//POPTR_0001s22920 (11)//POPTR_0001s22930 (11)//POPTR_0001s22900 (11)//POPTR_0001s22880 (11)//POPTR_0272s00200 (10)	scaffold_1:21742626-21742987(-) (11)//scaffold_1:21808941-21818278(-) (11)//scaffold_1:21832941-21833303(-) (11)//scaffold_1:21859603-21859965(-) (11)//scaffold_1:21879687-21880049(-) (11)//scaffold_1:21901525-21901887(-) (11)//scaffold_1:21925030-21925392(-) (11)//scaffold_1:21946972-21947334(-) (11)//scaffold_1:22004809-22013853(-) (11)//scaffold_272:11440-11537(-) (10)//scaffold_506:14731-14826(+) (9)	POPTR_0001s22850 (8)//POPTR_0001s22860 (6)	Q9FSG7	Thaumatin-like protein 1a	AT1G75800.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os07g23470.1	"thaumatin, putative, expressed"	Medtr7g124050.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143637.1.S1_at	A	A1TS	POPTR_0018s04110	POPTR_0018s04110 (10)	scaffold_18:3500063-3500694(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14366.1.S1_at	A	A1TS	POPTR_0006s12740	POPTR_0006s12740 (11)	scaffold_6:9886230-9888125(+) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.143665.1.S1_at	A	A1TS	POPTR_0006s20660	POPTR_0006s20660 (11)	scaffold_6:19673241-19675799(-) (11)	NA	Q8S9M1	"Probable plastid-lipid-associated protein 13, chloroplastic"	AT2G42130.4	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os04g57020.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143673.1.S1_at	A	A1TS	POPTR_0001s37320	POPTR_0001s37320 (11)	scaffold_1:36302115-36302204(-) (11)	NA	P67131	UPF0053 protein Mb2387c	AT3G13070.1	CBS domain-containing protein / transporter associated domain-containing protein 	LOC_Os03g39640.2	"CBS domain containing protein, expressed"	Medtr5g102230.1	CBS; Transporter-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143673.1.S1_s_at	A	A1TS	POPTR_0001s37320	POPTR_0001s37320 (11)	scaffold_1:36301683-36302114(-) (11)	NA	P67131	UPF0053 protein Mb2387c	AT3G13070.1	CBS domain-containing protein / transporter associated domain-containing protein 	LOC_Os03g39640.2	"CBS domain containing protein, expressed"	Medtr5g102230.1	CBS; Transporter-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143676.1.S1_at	A	A1TS	POPTR_0003s07570	POPTR_0003s07570 (10)	scaffold_3:9137022-9137932(-) (10)	NA	O34990	Formyltetrahydrofolate deformylase	AT5G47435.1	"formyltetrahydrofolate deformylase, putative "	LOC_Os03g01222.4	"formyl transferase, putative, expressed"	Medtr7g014920.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.143676.3.S1_a_at	A	A2TS	POPTR_0001s15650	POPTR_0003s07570 (11)//POPTR_0001s15650 (11)	scaffold_1:12478652-12479408(+) (11)//scaffold_3:9137302-9138099(-) (11)	NA	O34990	Formyltetrahydrofolate deformylase	AT5G47435.1	"formyltetrahydrofolate deformylase, putative "	LOC_Os03g01222.3	"formyl transferase, putative, expressed"	Medtr7g014920.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.143676.3.S1_at	A	A1TS	POPTR_0001s15650	POPTR_0001s15650 (10)	scaffold_1:12478568-12479618(+) (11)	NA	O34990	Formyltetrahydrofolate deformylase	AT5G47435.1	"formyltetrahydrofolate deformylase, putative "	LOC_Os03g01222.3	"formyl transferase, putative, expressed"	Medtr7g014920.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.143691.1.S1_s_at	A	A1TS	POPTR_0001s37520	POPTR_0001s37520 (11)	scaffold_1:36496289-36496399(+) (11)	NA	NA	NA	AT3G13130.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; Has 140 Blast hits to 132 proteins in 41 species: Archae - 2; Bacteria - 4; Metazoa - 29; Fungi - 20; Plants - 51; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). 	NA	NA	Medtr5g103200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143705.2.S1_s_at	A	A1TS	POPTR_0013s13470	POPTR_0013s13470 (11)	scaffold_13:13929682-13933428(-) (11)	NA	Q94KI8	Two pore calcium channel protein 1	AT4G03560.1	two-pore  channel 1 	LOC_Os01g48680.2	"two pore calcium channel protein 1, putative, expressed"	NA	NA	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.143705.4.S1_s_at	A	A1TS	POPTR_0017s14050	POPTR_0017s14050 (11)	scaffold_17:14207527-14208407(+) (11)	NA	Q9FLH0	Putative nuclear matrix constituent protein 1-like protein	AT1G67230.1	little nuclei1 	LOC_Os02g48010.1	"nuclear matrix constituent protein 1-like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143706.1.S1_at	A	A1TS	POPTR_0001s44020	POPTR_0001s44020 (9)	scaffold_1:44491074-44492877(+) (9)	NA	NA	NA	AT5G54540.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os08g08190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143754.1.S1_at	A	A1TS	POPTR_0020s00320	POPTR_0020s00320 (11)	scaffold_20:367397-368550(-) (11)	NA	O82256	Zinc finger protein CONSTANS-LIKE 13	AT2G47890.1	B-box type zinc finger protein with CCT domain 	LOC_Os03g22770.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g129880.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.14376.1.A1_at	A	A1TS	POPTR_0006s24820	POPTR_0006s24820 (11)	scaffold_6:23348377-23348877(-) (11)	NA	P42044	"Ferrochelatase-2, chloroplastic"	AT5G26030.2	ferrochelatase 1 	LOC_Os09g12560.2	"ferrochelatase-2, chloroplast precursor, putative, expressed"	Medtr3g140120.1	Ferrochelatase 	GO:0006783|heme biosynthetic process	GO:0004325|ferrochelatase activity	NA
PtpAffx.143760.1.S1_at	A	A1TS	POPTR_0006s03720	POPTR_0006s03720 (11)	scaffold_6:2490164-2492343(+) (11)	POPTR_0016s03590 (6)	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr7g106840.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.143786.1.S1_at	A	A1TS	POPTR_0004s04970	POPTR_0004s04970 (10)	scaffold_4:3727692-3730079(-) (10)	NA	O23661	Auxin response factor 3	AT2G33860.1	Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related 	LOC_Os01g48060.3	"auxin response factor, putative, expressed"	Medtr2g018270.1	Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.143791.1.S1_at	A	A2TS	POPTR_0014s01860	POPTR_0014s01860 (9)//POPTR_0014s17560 (9)	scaffold_14:1709760-1710437(-) (9)//scaffold_14:13808967-13809648(-) (9)	NA	P33642	Probable D-amino acid oxidase PA4548	AT5G48440.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g33900.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr7g046700.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.143791.2.S1_s_at	A	A2TS	POPTR_0014s01840	POPTR_0014s01870 (11)//POPTR_0014s01840 (11)	scaffold_14:1696587-1696644(-) (11)//scaffold_14:1713651-1713708(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143801.1.S1_s_at	A	A1MS	POPTR_0005s02680	POPTR_0005s02680 (10)	scaffold_5:1710564-1710803(-) (10)	NA	NA	NA	AT1G09070.1	soybean gene regulated by cold-2 	LOC_Os01g70790.1	"SRC2 protein, putative, expressed"	Medtr8g138850.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143820.1.S1_s_at	A	A1TS	POPTR_0001s37810	POPTR_0001s37810 (11)	scaffold_1:36884956-36887680(-) (11)	NA	Q75DK1	SEC14 cytosolic factor	AT1G55840.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g10650.1	"CRAL/TRIO domain containing protein, expressed"	Medtr3g079820.2	"Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143826.1.S1_at	A	A1TS	POPTR_0014s09150	POPTR_0014s09150 (11)	scaffold_14:6784695-6785701(+) (11)	NA	NA	NA	AT1G01430.1	TRICHOME BIREFRINGENCE-LIKE 25 	LOC_Os05g12380.1	expressed protein	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143837.1.S1_a_at	A	A1TS	POPTR_0015s13720	POPTR_0015s13720 (11)	scaffold_15:13543457-13544183(+) (11)	NA	NA	NA	AT4G26810.2	SWIB/MDM2 domain superfamily protein 	LOC_Os09g04720.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr5g025550.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143852.1.S1_s_at	A	A1TS	POPTR_0002s08180	POPTR_0002s08180 (11)	scaffold_2:5675857-5676542(+) (11)	NA	Q6S001	Kinesin-related protein 11	AT1G21730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g53520.1	"kinesin motor domain containing protein, putative, expressed"	Medtr7g112390.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.143906.1.S1_s_at	A	A1TS	POPTR_0004s01770	POPTR_0004s01770 (11)	scaffold_4:1071701-1072555(+) (11)	NA	NA	NA	AT4G21790.1	tobamovirus multiplication 1 	LOC_Os03g36790.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143914.1.S1_s_at	A	A1TS	POPTR_0011s03990	POPTR_0011s03990 (9)	scaffold_11:4054343-4055334(+) (9)	NA	NA	NA	AT1G11380.1	PLAC8 family protein 	LOC_Os07g36820.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr4g124650.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143938.1.S1_s_at	A	A1TS	POPTR_0014s04300	POPTR_0014s04300 (11)	scaffold_14:3359373-3359745(+) (11)	NA	Q9X0Y1	Phosphorylated carbohydrates phosphatase TM_1254	AT2G38740.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os10g41930.2	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr5g014090.1	"Eubacterial/plasma membrane H+-transporting two-sector ATPase, C subunit; HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.143949.1.S1_at	A	A1MA	POPTR_0019s14200	POPTR_0019s14200 (10)	scaffold_19:14945841-14946282(+) (10)	NA	NA	NA	AT4G03260.2	Outer arm dynein light chain 1 protein 	LOC_Os07g01550.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.143968.1.S1_at	A	A1TS	POPTR_0006s07840	POPTR_0006s07840 (11)	scaffold_6:5737618-5738390(+) (11)	NA	Q6NZ09	Proteasomal ubiquitin receptor ADRM1	AT2G26590.3	regulatory particle non-ATPase 13 	LOC_Os05g51640.2	"adhesion regulating molecule family, putative, expressed"	Medtr4g161200.1	Adhesion regulating molecule 	NA	NA	GO:0005737|cytoplasm||GO:0005634|nucleus
PtpAffx.143974.1.S1_s_at	A	A1TS	POPTR_0017s12880	POPTR_0017s12880 (11)	scaffold_17:13060864-13062491(-) (11)	NA	A8IR43	Ribosome biogenesis protein WDR12 homolog	AT5G15550.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g40930.1	"WD repeat-containing protein 12, putative, expressed"	Medtr7g117600.1	WD40-like; NLE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.143978.1.S1_at	A	A1TS	POPTR_0010s21550	POPTR_0010s21550 (11)	scaffold_10:18789144-18789963(+) (11)	NA	O95163	Elongator complex protein 1	AT5G13680.1	IKI3 family protein 	LOC_Os07g37640.1	"IKI3 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14400.1.A1_at	A	A1TS	POPTR_0001s26950	POPTR_0001s26950 (11)	scaffold_1:25924250-25925808(-) (11)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os04g28180.1	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	GO:0005622|intracellular
PtpAffx.14400.2.S1_at	A	A1TS	POPTR_0001s37140	POPTR_0001s37140 (11)	scaffold_1:35964978-35966144(+) (11)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os04g28180.1	"ribosomal protein, putative, expressed"	Medtr8g012690.1	"Plant EC metallothionein-like protein, family 15; Ribosomal protein S8E "	NA	NA	GO:0005622|intracellular
PtpAffx.144004.1.S1_at	A	A1TS	POPTR_0016s00330	POPTR_0016s00330 (11)	scaffold_16:60215-60638(-) (11)	NA	NA	NA	AT3G54780.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os09g12720.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g033390.1	"Zinc finger, RING-type; von Willebrand factor, type A "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144008.1.S1_s_at	A	A1TS	POPTR_0001s36720	POPTR_0001s36720 (9)	scaffold_1:35441355-35441808(+) (9)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.144011.1.S1_at	A	A1TS	POPTR_0018s11430	POPTR_0018s11430 (10)	scaffold_18:12169573-12170226(-) (10)	NA	NA	NA	AT5G57910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16930.1	expressed protein	Medtr8g145180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144014.1.S1_a_at	A	A1TS	POPTR_0018s12990	POPTR_0018s12990 (11)	scaffold_18:13463540-13465633(+) (11)	NA	Q8GW46	Axial regulator YABBY 5	AT2G26580.2	plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr8g120820.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14403.1.S1_s_at	A	A1TS	POPTR_0030s00230	POPTR_0030s00230 (11)	scaffold_30:44713-45136(-) (11)	NA	NA	NA	AT3G05100.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g47150.2	expressed protein	NA	NA	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.144034.1.S1_s_at	A	A1TS	POPTR_0007s00290	POPTR_0007s00290 (11)	scaffold_7:77596-77717(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144041.1.S1_s_at	A	A2TS	POPTR_0008s18910	POPTR_0008s18910 (11)//POPTR_0010s05850 (11)	scaffold_10:7307608-7310631(-) (11)//scaffold_8:12904645-12907183(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT3G26370.1	O-fucosyltransferase family protein 	LOC_Os02g06400.1	"growth regulator related protein, putative, expressed"	Medtr3g102440.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144050.1.S1_at	A	A1TS	POPTR_0001s01930	POPTR_0001s01930 (11)	scaffold_1:1408686-1410510(-) (11)	NA	Q39639	"Glycerol-3-phosphate acyltransferase, chloroplastic"	AT1G32200.2	phospholipid/glycerol acyltransferase family protein 	LOC_Os10g42720.1	"acyltransferase, putative, expressed"	Medtr5g029110.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.144053.1.S1_at	A	A1TS	POPTR_0007s14690	POPTR_0007s14690 (10)	scaffold_7:14462123-14462619(-) (10)	NA	Q38914	AP2-like ethylene-responsive transcription factor ANT	AT4G37750.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g12950.1	"AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed"	Medtr8g102060.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.144059.1.S1_at	A	A1TS	POPTR_0017s04030	POPTR_0017s04030 (11)	scaffold_17:3033825-3034738(-) (11)	NA	O80568	Inositol-tetrakisphosphate 1-kinase 4	AT2G43980.1	"inositol 1,3,4-trisphosphate 5/6-kinase 4 "	LOC_Os09g34300.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
PtpAffx.144067.1.S1_s_at	A	A1TS	POPTR_0018s13210	POPTR_0018s13210 (11)	scaffold_18:13617325-13617659(-) (11)	NA	Q84TI7	Sodium transporter HKT1	AT4G10310.1	high-affinity K+ transporter 1 	LOC_Os02g07830.1	"OsHKT1;3 - Na+ transporter, expressed"	Medtr6g092400.1	Cation transporter 	GO:0006812|cation transport	GO:0008324|cation transmembrane transporter activity	NA
PtpAffx.144077.1.S1_at	A	A1TS	POPTR_0003s03120	POPTR_0003s03120 (11)	scaffold_3:3477967-3480918(+) (11)	POPTR_0001s20820 (6)	A8N5E5	Protein SEY1	AT1G72960.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os01g39310.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144078.1.S1_at	A	A1TS	POPTR_0007s11760	POPTR_0007s11760 (11)	scaffold_7:12153384-12155116(-) (11)	NA	NA	NA	AT4G37130.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g28019.1	"nucleoporin p58/p45, putative, expressed"	Medtr5g018450.1	"nucleoporin-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144082.1.S1_at	A	A1TS	POPTR_0001s38800	POPTR_0001s38800 (9)	scaffold_1:38077879-38078746(+) (9)	NA	Q9FPS9	Ubiquitin carboxyl-terminal hydrolase 15	AT1G17110.1	ubiquitin-specific protease 15 	LOC_Os02g14730.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.144082.1.S1_s_at	A	A2TS	POPTR_0001s38800	POPTR_0001s38800 (11)//POPTR_0011s09750 (11)	scaffold_1:38078751-38078991(+) (11)//scaffold_11:12155273-12155513(-) (11)	NA	Q9FPS9	Ubiquitin carboxyl-terminal hydrolase 15	AT1G17110.1	ubiquitin-specific protease 15 	LOC_Os02g14730.1	"ubiquitin carboxyl-terminal hydrolase family protein, expressed"	Medtr2g082930.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, MYND-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
PtpAffx.144087.1.S1_at	A	A1TS	POPTR_0005s11690	POPTR_0005s11690 (11)	scaffold_5:8521698-8522485(-) (11)	NA	Q3TSG4	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.144089.1.S1_s_at	A	A1TS	POPTR_0002s12870	POPTR_0002s12870 (11)	scaffold_2:9573418-9575392(-) (11)	POPTR_0014s03110 (7)	Q9FX08	Probable protein phosphatase 2C 12	AT1G47380.1	Protein phosphatase 2C family protein 	LOC_Os02g35910.1	"protein phosphotase protein, putative, expressed"	Medtr3g147960.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14409.1.S1_at	A	A1TS	POPTR_0006s06740	POPTR_0006s06740 (9)	scaffold_6:4871744-4872243(-) (9)	NA	NA	NA	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr8g120620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14411.1.A1_at	A	A1TS	POPTR_0002s14780	POPTR_0002s14780 (11)	scaffold_2:10965651-10966790(+) (11)	NA	P62302	40S ribosomal protein S13	AT3G60770.1	Ribosomal protein S13/S15 	LOC_Os08g02410.1	"40S ribosomal protein S13, putative, expressed"	Medtr4g025470.1	"S15/NS1, RNA-binding; Ribosomal S13S15 N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.144115.1.S1_s_at	A	A1TS	POPTR_0005s20490	POPTR_0005s20490 (11)	scaffold_5:19544730-19544950(+) (11)	NA	NA	NA	AT1G21610.1	wound-responsive family protein 	LOC_Os05g34900.2	"wound-responsive family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14412.1.S1_at	A	A1TS	POPTR_0018s11460	POPTR_0018s11460 (11)	scaffold_18:12191704-12192755(+) (11)	NA	Q8GMT0	UPF0133 protein Synpcc7942_0464	AT2G24020.1	"Uncharacterised BCR, YbaB family COG0718 "	LOC_Os02g08380.1	"CR084 protein, putative, expressed"	Medtr8g145200.1	Conserved hypothetical protein 103 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144125.1.S1_s_at	A	A2TS	POPTR_0012s05310	POPTR_0012s05310 (11)//POPTR_0015s03690 (11)	scaffold_12:4916814-4917023(+) (11)//scaffold_15:3513195-3513404(-) (11)	NA	NA	NA	AT1G73850.1	Protein of unknown function (DUF1666) 	LOC_Os01g03870.1	expressed protein	Medtr6g028420.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144130.1.S1_s_at	A	A1TS	POPTR_0001s11360	POPTR_0001s11360 (11)	scaffold_1:8809450-8809592(-) (11)	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.144134.1.S1_a_at	A	A2TS	POPTR_0008s09300	POPTR_0010s16810 (11)//POPTR_0008s09300 (11)	scaffold_10:15662118-15662348(+) (11)//scaffold_8:5755786-5756015(-) (11)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT5G61240.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g11340.1	"leucine-rich repeat resistance protein, putative, expressed"	Medtr5g046640.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.144134.1.S1_at	A	A1TS	POPTR_0008s09300	POPTR_0008s09300 (11)	scaffold_8:5755712-5756899(-) (11)	POPTR_0010s16810 (6)	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT5G61240.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g11340.1	"leucine-rich repeat resistance protein, putative, expressed"	Medtr5g046640.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.144134.2.A1_at	A	A1TS	POPTR_0010s16810	POPTR_0010s16810 (11)	scaffold_10:15661878-15662498(+) (11)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT5G61240.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g11340.1	"leucine-rich repeat resistance protein, putative, expressed"	Medtr5g046640.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.14414.1.S1_at	A	A1TS	POPTR_0015s07710	POPTR_0015s07710 (9)	scaffold_15:8995777-8996200(-) (9)	NA	Q9LV11	"ATPase 11, plasma membrane-type"	AT5G62670.1	H(+)-ATPase 11 	LOC_Os12g44150.1	"plasma membrane ATPase, putative, expressed"	Medtr8g129390.1	Plasma-membrane proton-efflux P-type ATPase 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.144144.1.S1_s_at	A	A1TS	POPTR_0006s15390	POPTR_0006s15390 (9)	scaffold_6:12752205-12761769(+) (11)	NA	P12955	Xaa-Pro dipeptidase	AT4G29490.1	Metallopeptidase M24 family protein 	LOC_Os02g13140.1	"xaa-Pro dipeptidase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144147.1.S1_at	A	A1TS	POPTR_0011s07180	POPTR_0011s07180 (9)	scaffold_11:7945735-7946938(-) (9)	NA	Q9UHR5	SAP30-binding protein	AT1G29220.1	transcriptional regulator family protein 	LOC_Os01g55490.1	"transcriptional regulator family protein, putative, expressed"	Medtr1g107610.1	HCNGP-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144148.1.S1_s_at	A	A1TS	POPTR_0002s22770	POPTR_0002s22770 (11)	scaffold_2:19689723-19692390(+) (11)	NA	O82264	NPL4-like protein 2	AT2G47970.1	Nuclear pore localisation protein NPL4 	LOC_Os01g27990.1	"NPL4, putative, expressed"	AC235488_3.1	Ubiquitin; NPL4 AC235488.1 4598-10630 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144148.2.S1_s_at	A	A1TS	POPTR_0002s22770	POPTR_0002s22770 (11)	scaffold_2:19689016-19689235(+) (11)	NA	O82264	NPL4-like protein 2	AT2G47970.1	Nuclear pore localisation protein NPL4 	LOC_Os01g27990.1	"NPL4, putative, expressed"	AC235488_3.1	Ubiquitin; NPL4 AC235488.1 4598-10630 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144148.3.S1_at	A	A1TS	POPTR_0014s13120	POPTR_0014s13120 (11)	scaffold_14:9644399-9644795(-) (11)	NA	Q9LYC2	NPL4-like protein 1	AT3G63000.1	NPL4-like protein 1 	LOC_Os01g27990.1	"NPL4, putative, expressed"	AC235488_3.1	Ubiquitin; NPL4 AC235488.1 4598-10630 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144183.1.S1_s_at	A	A1TS	POPTR_0005s18890	POPTR_0005s18890 (11)	scaffold_5:17304559-17304596(-) (11)	NA	Q9URY7	Putative formamidase C869.04	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008152|metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	NA
PtpAffx.144197.1.A1_a_at	A	A1TS	POPTR_0001s14630	POPTR_0001s14630 (11)	scaffold_1:11479679-11480071(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.144197.2.A1_at	A	A1TS	POPTR_0001s14630	POPTR_0001s14630 (10)	scaffold_1:11479558-11479810(-) (10)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.144221.2.S1_at	A	A1TS	POPTR_0060s00194	POPTR_0060s00194 (11)	scaffold_60:5470-5949(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144224.1.S1_at	A	A1TS	POPTR_0007s14600	POPTR_0007s14600 (11)	scaffold_7:14355241-14355864(+) (11)	NA	Q2TA14	Lysosomal Pro-X carboxypeptidase	AT5G65760.1	Serine carboxypeptidase S28 family protein 	LOC_Os01g56150.1	"OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed"	Medtr2g091070.1	Peptidase S28 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
PtpAffx.144228.1.S1_at	A	A1TS	POPTR_0011s17180	POPTR_0011s17180 (11)	scaffold_11:18761107-18762956(+) (11)	NA	Q9LTT3	High mobility group B protein 10	AT3G13350.1	HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain 	LOC_Os02g27060.1	"high mobility group, putative, expressed"	Medtr1g146490.1	HMG1/2 (high mobility group) box; AT-rich interaction region 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.14425.1.S1_a_at	A	A2TS	POPTR_0001s32880	POPTR_0001s32880 (11)//POPTR_0017s08680 (11)	scaffold_1:31144607-31145581(-) (11)//scaffold_17:7309781-7311226(-) (11)	NA	O23264	Putative selenium-binding protein	AT4G14030.2	selenium-binding protein 1 	LOC_Os01g68770.1	"selenium-binding protein, putative, expressed"	Medtr3g104730.1	Selenium-binding protein 	NA	GO:0008430|selenium binding	NA
PtpAffx.14425.1.S1_at	A	A1TS	POPTR_0017s08680	POPTR_0017s08680 (11)	scaffold_17:7309635-7311303(-) (11)	NA	O23264	Putative selenium-binding protein	AT4G14030.2	selenium-binding protein 1 	LOC_Os01g68770.1	"selenium-binding protein, putative, expressed"	Medtr3g104730.1	Selenium-binding protein 	NA	GO:0008430|selenium binding	NA
PtpAffx.14425.2.S1_at	A	A1TS	POPTR_0001s32880	POPTR_0001s32880 (11)	scaffold_1:31144470-31145653(-) (11)	NA	O23264	Putative selenium-binding protein	AT4G14030.2	selenium-binding protein 1 	LOC_Os01g68770.1	"selenium-binding protein, putative, expressed"	Medtr3g104730.1	Selenium-binding protein 	NA	GO:0008430|selenium binding	NA
PtpAffx.144250.1.S1_s_at	A	A1TS	POPTR_0009s07200	POPTR_0009s07200 (11)	scaffold_9:6780578-6783111(-) (11)	NA	Q55DL0	Dihydropyrimidinase	AT5G12200.1	pyrimidine 2 	LOC_Os01g59340.3	"dihydropyrimidinase, putative, expressed"	Medtr5g096380.1	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.144250.2.S1_at	A	A1TS	POPTR_0001s28020	POPTR_0001s28020 (9)	scaffold_1:26828411-26830596(-) (9)	NA	Q55DL0	Dihydropyrimidinase	AT5G12200.1	pyrimidine 2 	LOC_Os01g59340.3	"dihydropyrimidinase, putative, expressed"	Medtr5g096300.1	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.144251.1.S1_at	A	A1TS	POPTR_0011s14470	POPTR_0011s14470 (9)	scaffold_11:16869307-16869774(+) (9)	NA	P40340	Tat-binding homolog 7	AT3G15120.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g47800.1	"AAA-type ATPase family protein, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0005524|ATP binding	NA
PtpAffx.144253.1.S1_at	A	A1TS	POPTR_0015s14080	POPTR_0015s14080 (11)	scaffold_12:14101693-14101730(-) (10)//scaffold_15:13816303-13816346(-) (11)	NA	Q9SAH3	Putative receptor-like protein kinase At1g80870	AT4G25390.1	Protein kinase superfamily protein 	LOC_Os03g14710.1	"protein kinase, putative, expressed"	Medtr8g150930.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144283.1.S1_at	A	A1TS	POPTR_0009s07040	POPTR_0009s07040 (11)	scaffold_9:6677924-6680214(+) (11)	NA	Q93WX6	"Cysteine desulfurase 2, chloroplastic"	AT1G08490.1	chloroplastic NIFS-like cysteine desulfurase 	LOC_Os12g18900.1	"aminotransferase, putative, expressed"	Medtr3g105250.1	"Aminotransferase, class V; "	GO:0008152|metabolic process	NA	NA
PtpAffx.14429.1.A1_a_at	A	A1TS	POPTR_0011s00810	POPTR_0011s00810 (11)	scaffold_11:410094-411268(-) (11)	NA	Q8WNV7	Dehydrogenase/reductase SDR family member 4	AT4G05530.1	indole-3-butyric acid response 1 	LOC_Os09g04730.1	"dehydrogenase/reductase SDR family member 2, putative, expressed"	Medtr8g147520.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.144292.1.S1_at	A	A1TS	POPTR_0001s11160	POPTR_0001s11160 (11)	scaffold_1:8650673-8652134(-) (11)	NA	NA	NA	AT3G05675.1	BTB/POZ domain-containing protein 	LOC_Os06g03840.1	"H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	AC233661_10.2	hypothetical protein AC233661.2 56500-58369 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144293.1.S1_at	A	A1TS	POPTR_0004s04030	POPTR_0004s04030 (11)	scaffold_4:2868526-2871035(-) (11)	NA	C0LGH3	Probable LRR receptor-like serine/threonine-protein kinase At1g56140	AT3G09010.1	Protein kinase superfamily protein 	LOC_Os04g58250.1	"protein kinase, putative, expressed"	Medtr2g014900.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144298.1.A1_at	A	A1TS	POPTR_0016s08130	POPTR_0016s08130 (10)	scaffold_16:5987092-5987232(-) (10)	NA	Q6DF08	UDP-glucuronic acid decarboxylase 1	AT3G53520.1	UDP-glucuronic acid decarboxylase 1 	LOC_Os05g29990.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.144328.1.S1_s_at	A	A1TS	POPTR_0010s22510	POPTR_0010s22510 (11)	scaffold_10:19408311-19409040(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144328.2.S1_at	A	A1TS	POPTR_0010s22510	POPTR_0010s22510 (11)	scaffold_10:19410806-19410885(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144328.2.S1_s_at	A	A1TS	POPTR_0010s22510	POPTR_0010s22510 (11)	scaffold_10:19410748-19411090(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G03040.3	IQ-domain 2 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr7g120980.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144348.1.S1_a_at	A	A2TS	POPTR_0006s26420	POPTR_0018s01200 (11)//POPTR_0006s26420 (11)	scaffold_18:1113847-1114174(-) (11)//scaffold_6:24635803-24636130(-) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT4G32551.1	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 	LOC_Os01g42260.3	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr3g136270.1	"Lissencephaly type-1-like homology motif; Single-stranded DNA-binding protein, SSDP; WD40-like; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144348.1.S1_at	A	A1MS	POPTR_0018s01200	POPTR_0018s01200 (9)	scaffold_18:1113535-1113723(-) (9)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT4G32551.1	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 	LOC_Os01g42270.1	"transcriptional corepressor LEUNIG, putative"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144348.2.S1_at	A	A1TS	POPTR_0018s01200	POPTR_0018s01200 (10)	scaffold_18:1112449-1113852(-) (10)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT4G32551.1	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain 	LOC_Os01g42270.1	"transcriptional corepressor LEUNIG, putative"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144362.1.S1_at	A	A1TS	POPTR_0006s03790	POPTR_0006s03790 (10)	scaffold_6:2544552-2545819(-) (10)	NA	Q9C977	"Pentatricopeptide repeat-containing protein At1g80270, mitochondrial"	AT1G80270.3	PENTATRICOPEPTIDE REPEAT 596 	LOC_Os12g07260.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g106790.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144381.1.A1_at	A	A1TS	POPTR_0005s10130	POPTR_0005s10130 (11)	scaffold_5:7232568-7234390(-) (11)	NA	B2RS91	RNA polymerase I-specific transcription initiation factor RRN3	AT2G34750.1	RNA polymerase I specific transcription initiation factor RRN3 protein 	LOC_Os06g47350.2	"RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed"	Medtr4g134310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144402.1.S1_at	A	A1TS	POPTR_0008s13840	POPTR_0008s13840 (10)	scaffold_8:9122007-9123546(+) (10)	NA	NA	NA	AT1G68080.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g13550.1	"oxidoreductase, putative, expressed"	AC146550_12.1	"oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, putative AC146550.40 43818-43015 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144411.1.A1_at	A	A1TA	POPTR_0001s09640	POPTR_0001s09640 (9)	scaffold_1:7346630-7347796(+) (10)	NA	NA	NA	AT1G75060.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19330.2); Has 104 Blast hits to 104 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g08450.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144423.1.S1_at	A	A1TS	POPTR_0013s02780	POPTR_0013s02780 (10)	scaffold_13:1676632-1678350(+) (10)	NA	O22494	"Glutathione synthetase, chloroplastic"	AT5G27380.1	glutathione synthetase 2 	LOC_Os11g42350.1	"glutathione synthetase, chloroplast precursor, putative, expressed"	Medtr7g139670.1	"Eukaryotic glutathione synthase; Eukaryotic glutathione synthase, ATP-binding; "	GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004363|glutathione synthase activity||GO:0005524|ATP binding	NA
PtpAffx.144428.1.S1_s_at	A	A3TS	POPTR_0006s07780	POPTR_0269s00200 (11)//POPTR_0006s07780 (11)//POPTR_0018s14250 (11)	scaffold_18:14500238-14500623(-) (11)//scaffold_269:2728-3109(+) (11)//scaffold_6:5696224-5696609(+) (11)	NA	B9HBA8	"Biotin carboxylase 1, chloroplastic"	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.144429.1.S1_at	A	A1TS	POPTR_0009s10980	POPTR_0009s10980 (11)	scaffold_9:9267320-9268245(-) (11)	NA	Q9FGT7	Two-component response regulator ARR18	AT2G03500.1	Homeodomain-like superfamily protein 	LOC_Os12g39640.1	"MYB family transcription factor, putative, expressed"	Medtr4g129010.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144436.1.S1_s_at	A	A1TS	POPTR_0009s08230	POPTR_0009s08230 (11)	scaffold_9:7572077-7573061(-) (11)	NA	Q0WM29	"Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial"	AT2G14170.1	aldehyde dehydrogenase  6B2 	LOC_Os07g09060.1	"aldehyde dehydrogenase, putative, expressed"	Medtr4g121550.1	Methylmalonate-semialdehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.144438.1.S1_at	A	A1TS	POPTR_0006s24530	POPTR_0006s24530 (11)	scaffold_6:23115114-23117522(+) (11)	NA	Q66GS2	"Probable beta-1,3-galactosyltransferase 12"	AT2G26100.1	Galactosyltransferase family protein 	LOC_Os06g06280.2	"galactosyltransferase family protein, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.144446.1.S1_at	A	A1TS	POPTR_0003s14390	POPTR_0003s14390 (11)	scaffold_3:14473274-14474197(+) (11)	POPTR_0003s14400 (8)//POPTR_0001s11050 (6)	P19813	Trehalase	AT4G24040.1	trehalase 1 	LOC_Os10g37660.1	"trehalase precursor, putative, expressed"	NA	NA	GO:0005991|trehalose metabolic process	"GO:0004555|""alpha,alpha-trehalase activity"""	NA
PtpAffx.144449.1.S1_at	A	A1TS	POPTR_0017s01390	POPTR_0017s01390 (11)	scaffold_17:968348-969281(+) (11)	NA	Q9SDX3	UTP--glucose-1-phosphate uridylyltransferase	AT5G17310.2	UDP-glucose pyrophosphorylase 2 	LOC_Os09g38030.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	Medtr5g084880.2	UTP--glucose-1-phosphate uridylyltransferase 	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.144449.1.S1_s_at	A	A2TS	POPTR_0004s07280	POPTR_0004s07280 (11)//POPTR_0017s01390 (11)	scaffold_17:968337-970151(+) (11)//scaffold_4:6008915-6010831(+) (11)	NA	Q9SDX3	UTP--glucose-1-phosphate uridylyltransferase	AT5G17310.2	UDP-glucose pyrophosphorylase 2 	LOC_Os09g38030.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	Medtr5g084880.2	UTP--glucose-1-phosphate uridylyltransferase 	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.14446.1.S1_at	A	A1TS	POPTR_0014s10960	POPTR_0014s10960 (11)	scaffold_14:8186517-8187056(+) (11)	NA	Q9S7P5	Squamosa promoter-binding-like protein 12	AT3G60030.1	squamosa promoter-binding protein-like 12 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.14446.2.S1_a_at	A	A2TS	POPTR_0002s18970	POPTR_0002s18970 (11)//POPTR_0014s10960 (11)	scaffold_14:8185203-8185610(+) (11)//scaffold_2:14863002-14863406(+) (11)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.14446.2.S1_at	A	A1TS	POPTR_0002s18970	POPTR_0002s18970 (10)	scaffold_2:14862411-14863339(+) (10)	NA	Q9SMX9	Squamosa promoter-binding-like protein 1	AT2G47070.1	squamosa promoter binding protein-like 1 	LOC_Os03g61760.1	"OsSPL6 - SBP-box gene family member, expressed"	Medtr1g105980.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.144479.1.S1_at	A	A1TS	POPTR_0010s17670	POPTR_0010s17670 (11)	scaffold_10:16163727-16166351(-) (11)	NA	Q3KGL4	Uracil-DNA glycosylase	AT3G18630.1	uracil dna glycosylase 	LOC_Os04g57730.1	"uracil-DNA glycosylase, putative, expressed"	Medtr4g104620.1	Uracil-DNA glycosylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14449.2.A1_a_at	A	A1TS	POPTR_0001s19440	POPTR_0001s19440 (11)	scaffold_1:17114202-17114490(-) (11)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14449.2.A1_at	A	A1TS	POPTR_0001s19440	POPTR_0001s19440 (11)	scaffold_1:17114172-17115638(-) (11)	NA	NA	NA	AT1G51730.1	Ubiquitin-conjugating enzyme family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1445.1.A1_at	A	A1TS	POPTR_0010s20550	POPTR_0010s20550 (11)	scaffold_10:18087422-18089337(+) (11)	NA	Q8W115	PRA1 family protein A3	AT3G11402.2	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os05g38160.1	"prenylated rab acceptor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144550.1.S1_s_at	A	A2TS	POPTR_0017s11650	POPTR_0017s11650 (11)//POPTR_0017s11660 (11)	scaffold_17:11436225-11436261(+) (11)//scaffold_17:11450135-11450171(+) (11)	NA	Q5EA79	Aldose 1-epimerase	AT3G47800.1	Galactose mutarotase-like superfamily protein 	LOC_Os02g36600.1	"aldose 1-epimerase, putative, expressed"	Medtr7g009340.1	Galactose mutarotase-like; 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.144588.1.S1_at	A	A1TS	POPTR_0001s40440	POPTR_0001s40440 (11)	scaffold_1:39888180-39888989(-) (11)	NA	Q5E9N0	Bystin	AT1G31660.1	CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). 	LOC_Os09g18320.1	"bystin, putative, expressed"	Medtr5g026110.1	Bystin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144588.2.S1_s_at	A	A1TS	POPTR_0011s11380	POPTR_0011s11380 (11)	scaffold_11:14138042-14138900(-) (11)	NA	Q13895	Bystin	AT1G31660.1	CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). 	LOC_Os09g18320.1	"bystin, putative, expressed"	Medtr5g026110.1	Bystin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144589.1.S1_at	A	A1TS	POPTR_0013s01900	POPTR_0013s01900 (11)	scaffold_13:1098187-1099513(+) (11)	NA	Q3E6S8	Putative protease Do-like 14	AT5G27660.1	Trypsin family protein with PDZ domain 	LOC_Os11g14170.1	"OsDegp12 - Putative Deg protease homologue, expressed"	Medtr7g138970.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidase S1C, HrtA/DegP2/Q/S "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.14459.1.S1_at	A	A1TS	POPTR_0010s09370	POPTR_0010s09370 (11)	scaffold_10:10230252-10231206(+) (11)	NA	Q8LAX0	Homocysteine S-methyltransferase 3	AT3G22740.1	homocysteine S-methyltransferase 3 	LOC_Os10g28630.1	"homocysteine S-methyltransferase protein, putative, expressed"	Medtr5g067080.1	Homocysteine S-methyltransferase 	NA	GO:0008898|homocysteine S-methyltransferase activity	NA
PtpAffx.144596.1.S1_at	A	A1TS	POPTR_0015s10240	POPTR_0015s10240 (11)	scaffold_15:11229962-11230681(+) (11)	NA	Q9DC40	Telomere length regulation protein TEL2 homolog	AT3G48470.1	embryo defective 2423 	LOC_Os02g38680.1	"EMB2423, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144614.1.S1_at	A	A1TS	POPTR_0014s04930	POPTR_0014s04930 (11)	scaffold_14:3815906-3816922(+) (11)	NA	O80513	Cyclin-U4-1	AT2G44740.1	cyclin p4;1 	LOC_Os10g41430.1	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14462.1.A1_s_at	A	A1TS	POPTR_0015s07690	POPTR_0015s07690 (11)	scaffold_15:8989044-8991909(+) (11)	NA	B0JL93	Trigger factor	AT5G55220.1	trigger factor type chaperone family protein 	LOC_Os06g20320.1	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr5g101240.1	"Bacterial trigger factor, C-terminal "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process||GO:0015031|protein transport	NA	NA
PtpAffx.144626.1.S1_at	A	A1TS	POPTR_0001s41290	POPTR_0001s41290 (11)	scaffold_1:40910153-40911710(-) (11)	NA	Q99LH1	Nucleolar GTP-binding protein 2	AT1G52980.1	GTP-binding family protein 	LOC_Os03g22890.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.144653.1.S1_at	A	A1TA	POPTR_0007s10490	POPTR_0007s10490 (11)	scaffold_7:10440016-10440332(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT4G37260.1	myb domain protein 73 	LOC_Os09g01960.1	"MYB family transcription factor, putative, expressed"	Medtr5g016440.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144656.1.S1_s_at	A	A1TS	POPTR_0393s00210	POPTR_0393s00210 (11)	scaffold_393:11416-12237(+) (11)	NA	Q83A83	Cystathionine beta-lyase	AT1G64660.1	methionine gamma-lyase 	LOC_Os10g37340.1	"cystathionine gamma-synthase, putative, expressed"	Medtr3g109370.1	Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; ; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.144658.1.S1_at	A	A1TS	POPTR_0014s11380	POPTR_0014s11380 (9)	scaffold_14:8477320-8477705(-) (9)	NA	Q9SIC9	"Pentatricopeptide repeat-containing protein At2g31400, chloroplastic"	AT2G31400.1	genomes uncoupled 1 	LOC_Os12g37550.1	"PPR repeat domain containing protein, putative, expressed"	Medtr7g015600.1	Smr protein/MutS2 C-terminal 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144665.1.S1_at	A	A1TS	POPTR_0017s05880	POPTR_0017s05880 (10)	scaffold_17:4570272-4570561(+) (10)	NA	Q9LX29	Serine/threonine-protein kinase-like protein ACR4	AT3G59420.1	crinkly4 	LOC_Os03g43670.1	"TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed"	Medtr2g118340.1	Protein kinase; TNFR/CD27/30/40/95 cysteine-rich region; Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144670.1.S1_at	A	A1TS	POPTR_0018s11750	POPTR_0018s11750 (9)	scaffold_18:12398749-12399083(+) (9)	NA	Q56X72	Reticulon-like protein B21	AT5G58000.1	Reticulon family protein 	LOC_Os08g17870.1	"reticulon domain containing protein, putative, expressed"	Medtr4g108500.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.144673.1.S1_at	A	A1TS	POPTR_0006s13670	POPTR_0006s13670 (11)	scaffold_6:10897024-10897064(+) (11)	NA	Q43062	Pectinesterase/pectinesterase inhibitor PPE8B	AT4G33220.1	pectin methylesterase 44 	LOC_Os08g34900.1	"pectinesterase, putative, expressed"	Medtr2g052320.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.144673.1.S1_s_at	A	A1TS	POPTR_0006s13670	POPTR_0006s13670 (11)	scaffold_6:10897056-10897731(+) (11)	NA	Q43062	Pectinesterase/pectinesterase inhibitor PPE8B	AT4G33220.1	pectin methylesterase 44 	LOC_Os08g34900.1	"pectinesterase, putative, expressed"	Medtr2g052320.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
PtpAffx.144674.1.S1_s_at	A	A1TS	POPTR_0006s15000	POPTR_0006s15000 (11)	scaffold_6:12474323-12474853(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G26100.1	casein kinase 1 	LOC_Os01g51200.1	"CK1_CaseinKinase_1.3 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr2g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144679.1.S1_at	A	A1TS	POPTR_0002s25950	POPTR_0002s25950 (9)	scaffold_2:22946016-22946325(+) (9)	NA	P27061	Acid phosphatase 1	AT1G04040.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr1g065230.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.1447.2.S1_s_at	A	A1TS	POPTR_0004s13640	POPTR_0004s13640 (11)	scaffold_4:13999250-13999969(+) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1447.3.S1_s_at	A	A1TS	POPTR_0014s02380	POPTR_0014s02380 (11)	scaffold_14:1994386-1994541(-) (11)	NA	Q9LTI3	Mannose-P-dolichol utilization defect 1 protein homolog	AT4G07390.1	Mannose-P-dolichol utilization defect 1 protein 	LOC_Os07g29610.1	"PQ loop repeat domain containing protein, expressed"	Medtr1g023860.1	Cystinosin/ERS1p repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1447.4.A1_s_at	A	A1TS	POPTR_0011s02750	POPTR_0011s02750 (11)	scaffold_11:2689548-2689820(+) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT5G46290.1	3-ketoacyl-acyl carrier protein synthase I 	LOC_Os06g09630.1	"3-oxoacyl-synthase, putative, expressed"	Medtr4g165920.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144706.1.S1_at	A	A1TS	POPTR_0008s21090	POPTR_0008s21090 (9)	scaffold_8:15228760-15229221(+) (9)	NA	Q54U75	Cyclic AMP receptor-like protein A	AT1G48270.1	G-protein-coupled receptor 1 	LOC_Os06g09930.1	"G protein coupled receptor, putative, expressed"	Medtr1g019260.1	"GPCR, family 2, secretin-like; cAMP-type GPCR "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144711.1.S1_s_at	A	A1TS	POPTR_0017s00350	POPTR_0017s00350 (11)	scaffold_17:107576-108986(-) (11)	POPTR_0007s00340 (6)	Q8LB01	"Dihydrodipicolinate reductase 2, chloroplastic"	AT3G59890.2	"Dihydrodipicolinate reductase, bacterial/plant "	LOC_Os02g24020.1	"dihydrodipicolinate reductase, putative, expressed"	Medtr4g125890.1	Dihydrodipicolinate reductase 	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009089|lysine biosynthetic process via diaminopimelate||GO:0044281|small molecule metabolic process	GO:0008839|dihydrodipicolinate reductase activity	NA
PtpAffx.144716.1.S1_s_at	A	A1TS	POPTR_0008s06510	POPTR_0008s06510 (11)	scaffold_8:3870882-3871240(+) (11)	NA	NA	NA	AT5G23950.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os01g63470.1	"C2 domain containing protein, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144732.1.S1_at	A	A1TS	POPTR_0007s14450	POPTR_0007s14450 (11)	scaffold_7:14219894-14220447(+) (11)	NA	NA	NA	AT2G22720.3	SPT2 chromatin protein 	LOC_Os11g19130.1	expressed protein	Medtr5g032140.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144739.1.S1_at	A	A3TS	POPTR_0001s34270	POPTR_0001s34270 (10)//POPTR_0001s26420 (9)//POPTR_0001s34260 (9)	scaffold_1:25450750-25451184(-) (9)//scaffold_1:32423786-32424234(+) (10)//scaffold_1:32428704-32429152(-) (10)	NA	P72854	Sulfite reductase [ferredoxin]	AT5G04590.1	sulfite reductase 	LOC_Os05g42350.1	"ferredoxin--nitrite reductase, putative, expressed"	Medtr4g129810.1	Ferredoxin-nitrite reductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0020037|heme binding||GO:0051536|iron-sulfur cluster binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.144743.1.S1_at	A	A1TS	POPTR_0002s25330	POPTR_0002s25330 (10)	scaffold_2:22431860-22433070(-) (10)	NA	Q01593	B3 domain-containing transcription factor ABI3	AT3G24650.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g68370.3	"B3 DNA binding domain containing protein, expressed"	Medtr7g096720.1	Transcriptional factor B3 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.144764.1.S1_at	A	A1TS	POPTR_0018s02860	POPTR_0018s02860 (10)	scaffold_18:2516386-2517639(+) (10)	NA	Q9ZVR5	Putative F-box protein PP2-B2	AT2G02250.1	phloem protein 2-B2 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr1g092930.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144785.1.S1_s_at	A	A1TS	POPTR_0012s08410	POPTR_0012s08410 (11)	scaffold_12:9495975-9496612(+) (11)	NA	NA	NA	AT5G62960.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g03790.1	expressed protein	Medtr3g114140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144787.1.S1_at	A	A1TS	POPTR_0001s15660	POPTR_0001s15660 (9)	scaffold_1:12483605-12484298(-) (9)	NA	NA	NA	AT4G17350.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os10g41060.1	expressed protein	Medtr5g012930.1	"Protein of unknown function DUF828, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144788.1.S1_s_at	A	A1MS	POPTR_0013s11260	POPTR_0013s11260 (11)	scaffold_13:11932199-11932391(-) (11)	NA	Q9LEQ3	Putative cyclic nucleotide-gated ion channel 18	AT5G14870.1	cyclic nucleotide-gated channel 18 	LOC_Os02g54760.1	"cyclic nucleotide-gated ion channel 14, putative, expressed"	Medtr3g133160.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.144789.1.S1_at	A	A1TS	POPTR_0019s07900	POPTR_0019s07900 (11)	scaffold_19:9193460-9197009(+) (11)	NA	Q6P5F9	Exportin-1	AT5G17020.1	exportin 1A 	LOC_Os03g64080.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr4g106960.1	"Importin-beta, N-terminal; "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.14479.1.S1_at	A	A1TS	POPTR_0002s03430	POPTR_0002s03430 (10)	scaffold_2:2120793-2121667(-) (10)	NA	Q93YN9	Inositol-pentakisphosphate 2-kinase	AT1G22100.1	Inositol-pentakisphosphate 2-kinase family protein 	LOC_Os04g56580.1	"inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed"	NA	NA	NA	GO:0035299|inositol pentakisphosphate 2-kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144790.1.S1_at	A	A1TS	POPTR_0001s38480	POPTR_0001s38480 (10)	scaffold_1:37601861-37602116(-) (10)	NA	Q8LPR5	Transcription factor TCP4	AT3G15030.3	TCP family transcription factor 4 	LOC_Os01g11550.1	"TCP family transcription factor, putative, expressed"	Medtr2g132520.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144803.1.S1_s_at	A	A1TS	POPTR_0015s03550	POPTR_0015s03550 (11)	scaffold_15:3249789-3252180(-) (11)	NA	Q9LEZ3	Transcription factor BIM1	AT5G08130.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.144806.1.S1_s_at	A	A1TS	POPTR_0002s06850	POPTR_0002s06850 (11)	scaffold_2:4607138-4608618(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g64720.1	expressed protein	Medtr6g038720.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144808.1.S1_s_at	A	A2TS	POPTR_0012s04570	POPTR_0012s04570 (11)//POPTR_0015s04410 (11)	scaffold_12:3865094-3866892(-) (11)//scaffold_15:4565055-4567194(+) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G73660.1	protein tyrosine kinase family protein 	LOC_Os06g12590.1	"protein kinase, putative, expressed"	Medtr4g155190.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.144811.1.S1_at	A	A1TS	POPTR_0008s22010	POPTR_0008s22010 (10)	scaffold_8:16356119-16356486(+) (10)	NA	NA	NA	AT2G01050.1	zinc ion binding;nucleic acid binding 	LOC_Os09g30020.1	"retrotransposon protein, putative, unclassified"	Medtr4g011530.1	"HMG-I and HMG-Y, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144812.1.S1_at	A	A1TS	POPTR_0014s03420	POPTR_0014s03420 (11)	scaffold_14:2758709-2759186(+) (11)	NA	NA	NA	AT2G26530.1	Protein of unknown function (DUF1645) 	LOC_Os02g52380.1	"DUF1645 domain containing protein, putative, expressed"	Medtr4g129240.1	Protein of unknown function DUF1645 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144818.1.S1_at	A	A1TS	POPTR_0014s15500	POPTR_0014s15500 (10)	scaffold_14:11550967-11552171(-) (10)	NA	NA	NA	AT2G32640.1	Lycopene beta/epsilon cyclase protein 	LOC_Os08g32630.1	"FAD dependent oxidoreductase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14482.1.A1_at	A	A1TS	POPTR_0009s08190	POPTR_0009s08190 (11)	scaffold_9:7535684-7535989(-) (11)	NA	Q12288	Putative glutamine amidotransferase YLR126C	AT2G23970.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os03g48060.1	"class I glutamine amidotransferase, putative, expressed"	Medtr5g090710.1	Glutamine amidotransferase class-I 	NA	GO:0003824|catalytic activity	NA
PtpAffx.144826.1.S1_at	A	A1TS	POPTR_0006s13360	POPTR_0006s13360 (10)	scaffold_6:10570805-10571328(+) (11)	NA	Q9ZQC5	"Interactor of constitutive active ROPs 2, chloroplastic"	AT2G37080.1	ROP interactive partner 3 	LOC_Os05g03120.2	"retrotransposon protein, putative, unclassified, expressed"	Medtr7g120930.1	"P70 protein, putative "	GO:0016032|viral reproduction	NA	NA
PtpAffx.144828.1.S1_s_at	A	A1TS	POPTR_0013s00420	POPTR_0013s00420 (11)	scaffold_13:172324-172692(-) (11)	NA	Q9LSS7	NEDD8-specific protease 1	AT5G60190.1	Cysteine proteinases superfamily protein 	LOC_Os12g01180.2	"OsWRKY57v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g080150.1	"Peptidase C48, SUMO/Sentrin/Ubl1 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.14483.1.S1_at	A	A1TS	POPTR_0006s02680	POPTR_0006s02680 (10)	scaffold_6:1702746-1703200(-) (11)	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144831.1.S1_s_at	A	A1TS	POPTR_0001s10710	POPTR_0001s10710 (11)	scaffold_1:8330108-8331492(+) (11)	POPTR_0003s14090 (7)	Q39828	Dynamin-related protein 5A	AT5G42080.1	dynamin-like protein 	LOC_Os05g48240.1	"dynamin family protein, putative, expressed"	Medtr5g009190.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.144834.1.S1_at	A	A1TS	POPTR_0001s06390	POPTR_0001s06390 (9)	scaffold_1:4895712-4896046(-) (9)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G13810.1	Glutaredoxin family protein 	LOC_Os03g24030.1	"glutaredoxin, putative, expressed"	Medtr3g020120.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.144838.1.S1_s_at	A	A1TS	POPTR_0012s06670	POPTR_0012s06670 (11)	scaffold_12:7063792-7065457(+) (11)	NA	O13046	WD repeat and HMG-box DNA-binding protein 1	AT3G42660.1	transducin family protein / WD-40 repeat family protein 	LOC_Os09g06560.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g074310.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144840.1.S1_at	A	A1TS	POPTR_0003s17720	POPTR_0003s17720 (11)	scaffold_3:17019887-17020435(+) (11)	NA	C0QTM4	30S ribosomal protein S15	AT1G80620.1	"S15/NS1, RNA-binding protein "	LOC_Os06g07996.1	ribosomal protein S15 containing protein	Medtr4g006580.1	"Ribosomal protein S15, bacterial chloroplast and mitochondrial type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.144848.1.S1_at	A	A1TS	POPTR_0009s10620	POPTR_0009s10620 (10)	scaffold_9:9082224-9082732(-) (10)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
PtpAffx.144850.1.S1_at	A	A1TS	POPTR_0013s06760	POPTR_0013s06760 (11)	scaffold_13:5469364-5471078(-) (11)	NA	Q946J8	Chromo domain-containing protein LHP1	AT5G17690.1	like heterochromatin protein (LHP1) 	LOC_Os10g17770.1	"chromo domain-containing protein LHP1, putative, expressed"	Medtr3g163840.1	Chromo; Chromo shadow 	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.144850.2.S1_a_at	A	A2TS	POPTR_0013s06760	POPTR_0013s06760 (11)//POPTR_0019s06120 (11)	scaffold_13:5471263-5471712(-) (11)//scaffold_19:6660770-6661243(+) (11)	NA	Q946J8	Chromo domain-containing protein LHP1	AT5G17690.1	like heterochromatin protein (LHP1) 	LOC_Os10g17770.1	"chromo domain-containing protein LHP1, putative, expressed"	Medtr3g163840.1	Chromo; Chromo shadow 	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.144850.2.S1_at	A	A1TS	POPTR_0019s06120	POPTR_0019s06120 (10)	scaffold_19:6660656-6661947(+) (10)	NA	Q946J8	Chromo domain-containing protein LHP1	AT5G17690.1	like heterochromatin protein (LHP1) 	LOC_Os10g17770.1	"chromo domain-containing protein LHP1, putative, expressed"	Medtr3g163840.1	Chromo; Chromo shadow 	GO:0006333|chromatin assembly or disassembly	GO:0003682|chromatin binding	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.144866.1.S1_at	A	A1MA	POPTR_0013s04020	POPTR_0013s04020 (10)	scaffold_13:2650995-2651520(-) (10)	NA	O22969	Uncharacterized protein At2g34160	AT3G04620.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.144880.1.S1_s_at	A	A1TS	POPTR_0019s15160	POPTR_0019s15160 (11)	scaffold_19:15732668-15733113(-) (11)	NA	NA	NA	AT2G30500.2	Kinase interacting (KIP1-like) family protein 	LOC_Os01g07370.2	"KIP1, putative, expressed"	Medtr5g083340.1	Prefoldin; KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144905.1.S1_at	A	A1TS	POPTR_0002s03950	POPTR_0002s03950 (9)	scaffold_2:2473414-2473859(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144914.1.S1_s_at	A	A1TS	POPTR_0015s01250	POPTR_0015s01250 (11)	scaffold_15:785283-786378(+) (11)	NA	Q9STP8	Acyl-CoA-binding domain-containing protein 2	AT4G27780.1	acyl-CoA binding protein 2 	LOC_Os04g58550.1	"acyl-CoA-binding domain-containing protein 6, putative, expressed"	Medtr5g046490.1	Ankyrin 	NA	GO:0000062|acyl-CoA binding	NA
PtpAffx.144919.1.S1_at	A	A1TS	POPTR_0005s01960	POPTR_0005s01960 (11)	scaffold_5:1273863-1274412(-) (11)	NA	NA	NA	AT5G26910.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1); Has 1322 Blast hits to 684 proteins in 162 species: Archae - 4; Bacteria - 497; Metazoa - 157; Fungi - 101; Plants - 155; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink). 	LOC_Os03g19080.3	expressed protein	Medtr2g038920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14494.1.A1_at	A	A1TS	POPTR_0102s00220	POPTR_0102s00220 (10)	scaffold_102:35795-36483(-) (10)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os11g39990.1	"patatin, putative, expressed"	Medtr5g017680.1	"Patatin; Serine/threonine protein kinase, active site "	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.144977.1.S1_at	A	A1TS	POPTR_0001s45210	POPTR_0001s45210 (11)	scaffold_1:45644765-45646815(+) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr7g140400.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.14498.1.A1_at	A	A1TS	POPTR_0018s05820	POPTR_0018s05820 (9)	scaffold_18:5454265-5454586(+) (9)	POPTR_0006s16250 (7)	O22714	Pentatricopeptide repeat-containing protein At1g60770	AT1G60770.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g25410.1	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g106520.1	Asparaginase/glutaminase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.144993.1.A1_at	A	A1MS	POPTR_0006s04790	POPTR_0006s04790 (9)	scaffold_6:3328119-3328276(-) (9)	NA	Q84M24	ABC transporter A family member 1	AT2G41700.1	ATP-binding cassette A1 	LOC_Os06g38950.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g112400.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.144999.1.A1_s_at	A	A1TS	POPTR_0013s08250	POPTR_0013s08250 (11)	scaffold_13:7293365-7293890(+) (11)	NA	P73387	Ycf60-like protein	AT2G47840.1	Uncharacterised conserved protein ycf60 	LOC_Os02g49470.1	"tic20 protein-related, putative, expressed"	Medtr7g089930.1	"Uncharacterized protein ycf60, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145.1.A1_at	A	A2TS	POPTR_0388s00210	POPTR_0388s00210 (11)//POPTR_0019s10160 (10)	scaffold_19:11737827-11738923(-) (10)//scaffold_388:14117-15208(-) (11)	NA	Q9HCG7	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086910.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.14501.1.S1_at	A	A1TS	POPTR_0001s27250	POPTR_0001s27250 (11)	scaffold_1:26137814-26138635(-) (11)	NA	Q8RUN2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1	AT2G28305.1	Putative lysine decarboxylase family protein 	LOC_Os04g43840.1	"possible lysine decarboxylase domain containing protein, expressed"	Medtr1g019920.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145060.1.A1_at	A	A1TS	POPTR_0005s10510	POPTR_0005s10510 (11)	scaffold_5:7558007-7559318(-) (11)	NA	P36616	Protein kinase dsk1	AT4G35500.1	Protein kinase superfamily protein 	LOC_Os09g37949.1	"serine/threonine-protein kinase SRPK1, putative, expressed"	Medtr5g024280.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.145066.1.A1_at	A	A1TS	POPTR_0008s20320	POPTR_0008s20320 (9)	scaffold_8:14070753-14071425(-) (9)	NA	Q7XJ53	Probable protein phosphatase 2C 35	AT3G06270.1	Protein phosphatase 2C family protein 	LOC_Os02g17970.2	"AGC_PKA/PKG_like.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g026070.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1451.1.S1_at	A	A1TS	POPTR_0014s09240	POPTR_0014s09240 (11)	scaffold_14:6867317-6867954(-) (11)	NA	Q5RFF6	Chitinase domain-containing protein 1	AT4G01040.1	Glycosyl hydrolase superfamily protein 	LOC_Os01g43220.1	"chitinase domain-containing protein 1 precursor, putative, expressed"	Medtr5g025520.1	"Glycoside hydrolase, family 18 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145195.1.A1_at	A	A1TS	POPTR_0014s05430	POPTR_0014s05430 (11)	scaffold_14:4036501-4036777(-) (9)//scaffold_14:4066529-4066805(-) (11)	POPTR_0014s05380 (8)	NA	NA	AT3G60450.1	Phosphoglycerate mutase family protein 	LOC_Os03g01180.1	"phosphoglycerate mutase, putative, expressed"	Medtr8g006090.1	PRIB5 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14522.1.S1_at	A	A1MS	POPTR_0015s12430	POPTR_0015s12430 (9)	scaffold_15:12679354-12679910(-) (9)	NA	A8QAN4	Protein SEY1	AT5G45160.1	Root hair defective 3 GTP-binding protein (RHD3) 	LOC_Os01g39310.1	"SEY1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145232.1.A1_at	A	A1TS	POPTR_0008s11910	POPTR_0008s11910 (11)	scaffold_8:7657795-7658982(-) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G68540.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g03670.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g067120.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.145251.1.A1_at	A	A1MS	POPTR_0001s24130	POPTR_0001s24130 (10)	scaffold_1:23503090-23503416(-) (10)	NA	O54922	Exocyst complex component 7	AT3G09520.1	exocyst subunit exo70 family protein H4 	LOC_Os09g26820.1	"exo70 exocyst complex subunit, putative, expressed"	Medtr4g079170.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.145273.2.A1_a_at	A	A1TS	POPTR_0005s17260	POPTR_0005s17260 (11)	scaffold_5:14490501-14490757(+) (11)	NA	Q2KJ44	Serine/threonine-protein phosphatase 2A activator	AT4G08960.1	phosphotyrosyl phosphatase activator (PTPA) family protein 	LOC_Os06g11640.1	"serine/threonine-protein phosphatase 2A activator 2, putative, expressed"	Medtr4g069930.1	"Phosphotyrosyl phosphatase activator, PTPA "	NA	GO:0019211|phosphatase activator activity	NA
PtpAffx.145273.2.A1_at	A	A1TS	POPTR_0005s17260	POPTR_0005s17260 (9)	scaffold_5:14488249-14490516(+) (9)	NA	Q2KJ44	Serine/threonine-protein phosphatase 2A activator	AT4G08960.1	phosphotyrosyl phosphatase activator (PTPA) family protein 	LOC_Os06g11640.1	"serine/threonine-protein phosphatase 2A activator 2, putative, expressed"	Medtr4g069930.1	"Phosphotyrosyl phosphatase activator, PTPA "	NA	GO:0019211|phosphatase activator activity	NA
PtpAffx.14528.1.A1_a_at	A	A1TS	POPTR_0003s05270	POPTR_0003s05270 (11)	scaffold_3:6498059-6498141(-) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.14528.1.A1_at	A	A1TS	POPTR_0003s05270	POPTR_0003s05270 (11)	scaffold_3:6497785-6498247(-) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.145283.1.A1_at	A	A1TS	POPTR_0012s14220	POPTR_0012s14220 (11)	scaffold_12:14187180-14187724(-) (11)	NA	Q7XJ98	Xyloglucan galactosyltransferase KATAMARI1	AT5G62220.1	glycosyltransferase 18 	LOC_Os04g48480.1	"exostosin family domain containing protein, expressed"	Medtr1g130380.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.145291.1.A1_at	A	A1TS	POPTR_0010s08410	POPTR_0010s08410 (11)	scaffold_10:9331916-9332084(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.145296.1.A1_a_at	A	A1TS	POPTR_0003s16240	POPTR_0003s16240 (9)	scaffold_3:15824124-15824341(+) (11)	NA	NA	NA	AT1G28100.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 27 species: Archae - 0; Bacteria - 14; Metazoa - 0; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os10g35644.1	expressed protein	AC235677_28.1	hypothetical protein AC235677.1 126634-128282 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145299.1.A1_at	A	A1TS	POPTR_0017s13610	POPTR_0017s13610 (10)	scaffold_17:13727373-13728184(+) (10)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.145306.1.A1_s_at	A	A9TS	POPTR_0016s04350	POPTR_0016s04390 (9)//POPTR_0016s04740 (9)//POPTR_0016s04380 (9)//POPTR_0016s04400 (9)//POPTR_0016s04770 (9)//POPTR_0016s04350 (9)//POPTR_0016s04760 (9)//POPTR_0016s04640 (9)//POPTR_0016s04780 (9)	scaffold_16:2544141-2544176(+) (9)//scaffold_16:2571347-2571382(+) (9)//scaffold_16:2575741-2575776(+) (9)//scaffold_16:2586009-2586044(+) (9)//scaffold_16:2720771-2720806(-) (9)//scaffold_16:2828518-2828553(-) (9)//scaffold_16:2844533-2844568(-) (9)//scaffold_16:2852213-2852248(-) (9)//scaffold_16:2852541-2852576(-) (9)//scaffold_16:2860320-2860355(-) (9)	POPTR_0016s04360 (6)	NA	NA	AT5G22355.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os07g42030.1	"DC1 domain-containing protein, putative"	Medtr1g039690.1	"Zinc finger, PHD-type; C1-like "	GO:0007242|intracellular signaling cascade||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008270|zinc ion binding	NA
PtpAffx.14532.1.A1_at	A	A1TS	POPTR_0005s06590	POPTR_0005s06590 (9)	scaffold_5:4412606-4412987(-) (9)	POPTR_0005s06630 (8)	NA	NA	AT5G64020.1	TRICHOME BIREFRINGENCE-LIKE 14 	LOC_Os11g13800.2	expressed protein	Medtr4g143010.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145327.1.A1_at	A	A1TS	POPTR_0016s14350	POPTR_0016s14350 (9)	scaffold_16:13590118-13590341(-) (9)	NA	Q6Z3U3	B3 domain-containing protein Os07g0679700	AT4G32010.1	HSI2-like 1 	LOC_Os07g48200.1	"B3 DNA binding domain containing protein, putative, expressed"	Medtr4g036540.1	"Transcriptional factor B3; Zinc finger, CW-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.145334.1.A1_at	A	A1TS	POPTR_0010s20020	POPTR_0010s20020 (11)	scaffold_10:17768961-17769125(+) (11)	NA	NA	NA	AT2G39950.1	unknown protein; Has 978 Blast hits to 254 proteins in 81 species: Archae - 0; Bacteria - 8; Metazoa - 109; Fungi - 53; Plants - 41; Viruses - 0; Other Eukaryotes - 767 (source: NCBI BLink). 	LOC_Os07g01060.1	expressed protein	Medtr5g089220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145341.1.A1_at	A	A1TS	POPTR_0001s16500	POPTR_0001s16500 (11)	scaffold_1:13297702-13297997(+) (11)	NA	B1LCI2	Chaperone protein dnaJ	AT3G14200.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os02g54130.2	"heat shock protein DnaJ, putative, expressed"	Medtr8g025850.2	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.145369.1.A1_at	A	A1TS	POPTR_0009s07120	POPTR_0009s07120 (10)	scaffold_9:6735058-6735864(-) (10)	NA	NA	NA	AT2G26770.2	plectin-related 	LOC_Os01g59130.2	"proline-rich family protein, putative, expressed"	Medtr5g095960.1	"3'-5'-exoribonuclease/ RNA binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145392.1.A1_at	A	A1TS	POPTR_0011s14130	POPTR_0011s14130 (10)	scaffold_11:16666986-16667321(-) (10)	NA	Q9LJU7	Purple acid phosphatase 18	AT3G20500.1	purple acid phosphatase 18 	LOC_Os03g37130.1	"ATPAP18/PAP18, putative, expressed"	Medtr3g068290.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.145393.1.A1_at	A	A1TS	POPTR_0010s16130	POPTR_0010s16130 (11)	scaffold_10:15154055-15154407(-) (11)	NA	Q9LNF4	Probable protein phosphatase 2C 13	AT1G48040.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037290.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145393.2.A1_at	A	A1TS	POPTR_0008s10010	POPTR_0008s10010 (9)	scaffold_8:6243700-6243926(+) (9)	NA	Q9LNF4	Probable protein phosphatase 2C 13	AT1G48040.1	Protein phosphatase 2C family protein 	LOC_Os01g19130.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037290.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145397.1.A1_s_at	A	A2TS	POPTR_0004s21970	POPTR_0004s21980 (11)//POPTR_0004s21970 (11)	scaffold_4:20911123-20913220(-) (11)//scaffold_4:20924520-20926620(-) (11)	NA	Q9SAR5	Ankyrin repeat domain-containing protein 2	AT2G17390.1	ankyrin repeat-containing 2B 	LOC_Os09g33810.2	"ankyrin repeat domain containing protein, putative, expressed"	Medtr3g154100.1	"Ankyrin repeat domain-containing protein 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145399.1.S1_at	A	A1TS	POPTR_0001s46110	POPTR_0001s46110 (9)	scaffold_1:46574527-46574923(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1454.1.S1_a_at	A	A1TS	POPTR_0009s06730	POPTR_0009s06730 (11)	scaffold_9:6447682-6448000(+) (11)	NA	Q5ZA07	E3 ubiquitin-protein ligase makorin	AT3G08505.1	zinc finger (CCCH-type/C3HC4-type RING finger) family protein 	LOC_Os06g21390.2	"Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed"	Medtr3g030250.1	"Zinc finger, CCCH-type; Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.145406.1.S1_at	A	A1TS	POPTR_0005s23330	POPTR_0005s23330 (9)	scaffold_5:22148041-22150672(-) (11)	NA	Q9M1W7	F-box/kelch-repeat protein SKIP30	AT3G63220.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145411.1.S1_at	A	A1TS	POPTR_0009s08400	POPTR_0009s08400 (11)	scaffold_9:7702662-7704580(-) (11)	NA	Q6GLP4	Protein RMD5 homolog A	AT4G37880.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os06g38940.2	"RMD5 homolog A, putative, expressed"	Medtr2g010250.1	"Zinc finger, RING-type; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145417.1.S1_at	A	A1TS	POPTR_0014s01950	POPTR_0014s01950 (10)	scaffold_14:1748264-1748907(-) (10)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145419.1.S1_at	A	A1TS	POPTR_0008s05650	POPTR_0008s05650 (10)	scaffold_8:3285249-3286144(+) (10)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os05g02020.1	"protein kinase APK1A, chloroplast precursor, putative, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.145426.1.S1_at	A	A1TS	POPTR_0001s38950	POPTR_0001s38950 (11)	scaffold_1:38201177-38201554(-) (11)	NA	P72580	Prenyl transferase	AT1G78510.1	solanesyl diphosphate synthase 1 	LOC_Os05g50550.1	"polyprenyl synthetase, putative, expressed"	Medtr8g093730.1	Terpenoid synthase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.145430.1.S1_at	A	A1TS	POPTR_0003s09370	POPTR_0003s09370 (10)	scaffold_3:10672893-10674687(+) (10)	NA	Q40152	Heat shock factor protein HSF8	AT1G32330.1	heat shock transcription factor A1D 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.145434.2.A1_at	A	A1TS	POPTR_0001s40770	POPTR_0001s40770 (9)	scaffold_1:40353159-40353680(-) (9)	NA	O80340	Ethylene-responsive transcription factor 4	AT3G15210.1	ethylene responsive element binding factor 4 	LOC_Os01g12440.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.14544.1.S1_at	A	A1TS	POPTR_0010s11510	POPTR_0010s11510 (11)	scaffold_10:11751617-11751723(+) (11)	NA	Q94AH8	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6"	AT1G68020.2	UDP-Glycosyltransferase / trehalose-phosphatase family protein 	LOC_Os09g23350.1	"trehalose synthase, putative, expressed"	Medtr4g156760.1	"Glycosyl transferase, family 20; Trehalose-phosphatase "	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.145475.1.S1_at	A	A1TS	POPTR_0004s06330	POPTR_0004s06330 (10)	scaffold_4:5037985-5039100(-) (10)	NA	Q9C7N4	GDSL esterase/lipase At1g29670	AT1G29670.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr4g136410.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.145485.1.S1_at	A	A1TS	POPTR_0012s10930	POPTR_0012s10930 (11)	scaffold_12:11592736-11593182(-) (11)	NA	Q6TNS2	p21-activated protein kinase-interacting protein 1-like	AT1G65030.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os12g42150.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g056250.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145486.1.S1_at	A	A1TS	POPTR_0010s13710	POPTR_0010s13710 (9)	scaffold_10:13485732-13486240(+) (9)	NA	Q54I39	IST1-like protein	AT1G13340.1	Regulator of Vps4 activity in the MVB pathway protein 	LOC_Os03g50210.1	"DUF292 domain containing protein, expressed"	Medtr6g093400.1	"Protein of unknown function DUF292, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14549.1.S1_at	A	A2TS	POPTR_0010s21210	POPTR_0749s00210 (10)//POPTR_0010s21210 (10)	scaffold_10:18578448-18583967(+) (11)//scaffold_749:309-4689(+) (10)	POPTR_0010s21220 (6)	NA	NA	AT2G16050.1	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os09g20150.1	C1-like domain containing protein	Medtr7g026240.1	DC1; C1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145502.1.S1_at	A	A1TS	POPTR_0003s16670	POPTR_0003s16670 (11)	scaffold_3:16219008-16219720(-) (11)	NA	NA	NA	AT5G13100.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g01295.1	expressed protein	Medtr7g022340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145502.2.A1_at	A	A1TS	POPTR_0001s13530	POPTR_0001s13530 (11)	scaffold_1:10604871-10606750(-) (11)	NA	NA	NA	AT5G13100.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g01295.1	expressed protein	Medtr7g022340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145508.1.S1_at	A	A1TS	POPTR_0001s37550	POPTR_0001s37550 (9)	scaffold_1:36512966-36514927(+) (9)	NA	Q8LBL1	Calcium-activated outward-rectifying potassium channel 1	AT5G55630.2	Outward rectifying potassium channel protein 	LOC_Os03g54100.2	"potassium channel protein, putative, expressed"	Medtr5g103230.1	"Calcium-activated outward-rectifying potassium channel 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145511.1.S1_at	A	A1TS	POPTR_0001s30980	POPTR_0001s30980 (11)	scaffold_1:29397423-29397945(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145512.1.S1_at	A	A1TS	POPTR_0005s01840	POPTR_0005s01840 (11)	scaffold_5:1224223-1225366(+) (11)	NA	P31414	Pyrophosphate-energized vacuolar membrane proton pump 1	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.145514.1.S1_at	A	A1TS	POPTR_0001s25590	POPTR_0001s25590 (11)	scaffold_1:24666113-24666919(+) (11)	POPTR_0009s04730 (8)	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145516.1.S1_s_at	A	A1TS	POPTR_0001s38450	POPTR_0001s38450 (11)	scaffold_1:37567548-37573406(+) (11)	NA	NA	NA	AT1G53210.1	sodium/calcium exchanger family protein / calcium-binding EF hand family protein 	LOC_Os02g14980.1	"calcium-binding EF hand family protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.14553.1.S1_at	A	A1TS	POPTR_0009s12280	POPTR_0009s12280 (11)	scaffold_9:10056018-10056545(+) (11)	NA	NA	NA	AT4G39140.5	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145531.1.S1_at	A	A1TS	POPTR_0001s30710	POPTR_0001s30710 (11)	scaffold_1:29181165-29182293(-) (11)	NA	Q9C6D2	Methylthioribose kinase	AT1G49820.1	S-methyl-5-thioribose kinase 	LOC_Os04g57400.1	"methylthioribose kinase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145538.1.S1_at	A	A1TS	POPTR_0018s11180	POPTR_0018s11180 (11)	scaffold_18:11973047-11973658(+) (11)	NA	NA	NA	AT4G30780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24100.1); Has 109 Blast hits to 109 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 95; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). 	LOC_Os06g08740.1	expressed protein	Medtr8g144780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145558.1.S1_a_at	A	A1TS	POPTR_0019s07620	POPTR_0019s07620 (11)	scaffold_19:8697115-8697291(-) (11)	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
PtpAffx.145560.1.S1_at	A	A1TS	POPTR_0004s09140	POPTR_0004s09140 (10)	scaffold_4:7640278-7641481(-) (10)	NA	Q9UKZ1	UPF0760 protein C2orf29	AT5G18420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g13694.1	"AGAP007117-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145592.1.S1_at	A	A1TS	POPTR_0018s06900	POPTR_0018s06900 (11)	scaffold_18:6990549-6992368(-) (11)	NA	O23969	Pollen-specific protein SF21	AT5G56750.1	N-MYC downregulated-like 1 	LOC_Os02g13150.1	"pollen-specific protein SF21, putative, expressed"	Medtr4g160760.1	Ndr 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145596.1.S1_at	A	A1TS	POPTR_0008s06960	POPTR_0008s06960 (10)	scaffold_8:4207677-4207780(-) (10)	NA	P48619	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.145636.1.S1_at	A	A1TS	POPTR_0016s14900	POPTR_0016s14900 (11)	scaffold_16:13987653-13987904(-) (11)	NA	NA	NA	AT3G54200.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os06g32970.1	harpin-induced protein 1 domain containing protein	Medtr8g005060.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
PtpAffx.145643.1.S1_at	A	A1TS	POPTR_0011s14890	POPTR_0011s14890 (10)	scaffold_11:17141272-17142561(-) (10)	NA	Q9ASU1	Diacylglycerol O-acyltransferase 2	AT3G51520.1	diacylglycerol acyltransferase family 	LOC_Os06g22080.1	"diacylglycerol O-acyltransferase, putative, expressed"	Medtr5g024950.1	Diacylglycerol acyltransferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.14565.1.S1_at	A	A1TS	POPTR_0018s06880	POPTR_0018s06880 (11)	scaffold_18:6960832-6961268(-) (11)	NA	Q9ZUP2	"DNA repair protein recA homolog 3, mitochondrial"	AT2G19490.1	recA DNA recombination family protein 	LOC_Os01g67510.1	"recA protein, putative, expressed"	Medtr2g046210.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145701.1.S1_s_at	A	A1TS	POPTR_0001s44970	POPTR_0001s44970 (11)	scaffold_1:45290206-45291178(-) (11)	NA	Q9LJU7	Purple acid phosphatase 18	AT3G20500.1	purple acid phosphatase 18 	LOC_Os03g37130.1	"ATPAP18/PAP18, putative, expressed"	Medtr3g068290.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.145719.2.S1_a_at	A	A1MS	POPTR_0006s27100	POPTR_0006s27100 (11)	scaffold_6:25106051-25106615(-) (11)	NA	Q55AX0	Dynamin-like protein C	AT3G19720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g07880.1	"dynamin family protein, putative, expressed"	AC235758_24.1	Dynamin central region; Dynamin; Dynamin GTPase effector AC235758.1 170271-163793 H EGN_Mt090430 200	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.145719.3.S1_a_at	A	A1TS	POPTR_0006s27100	POPTR_0006s27100 (11)	scaffold_6:25106294-25106341(-) (11)	NA	Q55AX0	Dynamin-like protein C	AT3G19720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g07880.1	"dynamin family protein, putative, expressed"	AC235758_24.1	Dynamin central region; Dynamin; Dynamin GTPase effector AC235758.1 170271-163793 H EGN_Mt090430 200	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.145719.3.S1_at	A	A1TS	POPTR_0006s27100	POPTR_0006s27100 (11)	scaffold_6:25105493-25105782(-) (11)	NA	Q55AX0	Dynamin-like protein C	AT3G19720.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g07880.1	"dynamin family protein, putative, expressed"	AC235758_24.1	Dynamin central region; Dynamin; Dynamin GTPase effector AC235758.1 170271-163793 H EGN_Mt090430 200	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.14572.1.S1_a_at	A	A2TS	POPTR_0004s09700	POPTR_0004s09700 (11)//POPTR_0005s15450 (11)	scaffold_4:8214383-8215078(-) (11)//scaffold_5:12116959-12117642(-) (11)	NA	Q56ZZ7	Plastidic glucose transporter 4	AT5G16150.3	plastidic GLC translocator 	LOC_Os01g04190.2	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.14572.1.S1_at	A	A1TS	POPTR_0004s09700	POPTR_0004s09700 (11)	scaffold_4:8214135-8214389(-) (11)	NA	Q56ZZ7	Plastidic glucose transporter 4	AT5G16150.3	plastidic GLC translocator 	LOC_Os01g04190.2	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.14572.2.S1_a_at	A	A1TS	POPTR_0005s15450	POPTR_0005s15450 (11)	scaffold_5:12116675-12117042(-) (11)	NA	Q56ZZ7	Plastidic glucose transporter 4	AT5G16150.3	plastidic GLC translocator 	LOC_Os01g04190.3	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.145771.1.A1_s_at	A	A1TS	POPTR_0014s03580	POPTR_0014s03580 (11)	scaffold_14:2863592-2863960(+) (11)	NA	Q9SX98	Lysine histidine transporter-like 8	AT1G47670.1	Transmembrane amino acid transporter family protein 	LOC_Os12g30040.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr2g014200.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145773.1.S1_at	A	A2TS	POPTR_0013s12740	POPTR_0013s12740 (11)//POPTR_0019s12230 (11)	scaffold_13:13425142-13425527(-) (11)//scaffold_19:13327370-13327763(+) (11)	NA	Q40521	Ras-related protein Rab11B	AT5G60860.1	RAB GTPase homolog A1F 	LOC_Os05g48980.1	"ras-related protein, putative, expressed"	Medtr4g109180.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.145798.1.S1_at	A	A1MS	POPTR_0013s08610	POPTR_0013s08610 (11)	scaffold_13:8004733-8005034(+) (11)	NA	O48921	"Cytochrome P450 97B2, chloroplastic"	AT1G31800.1	"cytochrome P450, family 97, subfamily A, polypeptide 3 "	LOC_Os02g57290.4	"cytochrome P450, putative, expressed"	Medtr7g089220.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.1458.1.S1_at	A	A1TS	POPTR_0014s09860	POPTR_0014s09860 (11)	scaffold_14:7378747-7379024(-) (11)	NA	P46897	Homeobox-leucine zipper protein ATHB-7	AT2G46680.1	homeobox 7 	LOC_Os09g35910.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g029340.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.145807.1.S1_at	A	A1TS	POPTR_0002s20260	POPTR_0002s20260 (11)	scaffold_2:16212118-16214136(+) (11)	NA	O81122	Ethylene receptor	AT2G40940.1	ethylene response sensor 1 	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.145837.1.S1_s_at	A	A1TS	POPTR_0007s14200	POPTR_0007s14200 (11)	scaffold_7:14052840-14054810(+) (11)	NA	Q5XF57	Probable receptor-like serine/threonine-protein kinase At5g57670	AT5G65530.1	Protein kinase superfamily protein 	LOC_Os06g45350.2	"protein kinase domain containing protein, expressed"	Medtr5g033220.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14585.2.S1_a_at	A	A1TS	POPTR_0009s03300	POPTR_0009s03300 (11)	scaffold_9:3968559-3971537(-) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.14585.3.S1_at	A	A1TS	POPTR_0001s24290	POPTR_0001s24290 (11)	scaffold_1:23618181-23618427(-) (11)	NA	P28186	Ras-related protein ARA-3	AT5G59840.1	Ras-related small GTP-binding family protein 	LOC_Os05g38630.2	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.145868.1.S1_s_at	A	A2TS	POPTR_0010s02520	POPTR_0010s02520 (11)//POPTR_0034s00260 (11)	scaffold_10:2939998-2940114(+) (11)//scaffold_34:145620-145736(+) (11)	NA	A4QND5	60S ribosome subunit biogenesis protein NIP7 homolog	AT4G15770.1	RNA binding 	LOC_Os07g47420.1	"60S ribosome subunit biogenesis protein NIP7, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14587.1.A1_at	A	A1TS	POPTR_0006s10820	POPTR_0006s10820 (11)	scaffold_6:8211946-8212383(-) (11)	NA	NA	NA	AT1G06920.1	ovate family protein 4 	LOC_Os01g60810.1	"DUF623 domain containing protein, expressed"	Medtr7g079930.1	Uncharacterized plant-specific domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14589.1.S1_at	A	A1TS	POPTR_0007s00220	POPTR_0007s00220 (10)	scaffold_7:25352-25964(+) (10)	NA	A2Q1V6	Cysteine protease ATG4	AT2G44140.1	Peptidase family C54 protein 	LOC_Os04g58560.1	"cysteine protease ATG4, putative, expressed"	Medtr7g092800.1	Peptidase C54 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145893.1.S1_at	A	A1TS	POPTR_0014s03570	POPTR_0014s03570 (11)	scaffold_14:2849307-2849863(-) (11)	NA	O04348	"Thylakoidal processing peptidase 1, chloroplastic"	AT2G30440.1	thylakoid processing peptide 	LOC_Os09g28000.1	"OsSigP6 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr3g148730.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1459.1.A1_s_at	A	A1TS	POPTR_0012s08330	POPTR_0012s08330 (11)	scaffold_12:9406124-9408683(-) (11)	NA	Q9D7P6	"Iron-sulfur cluster assembly enzyme ISCU, mitochondrial"	AT4G22220.1	SufE/NifU family protein 	LOC_Os01g47340.1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"	Medtr3g114000.1	FeS cluster assembly scaffold IscU 	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.1459.1.A1_x_at	A	A1TS	POPTR_0012s08330	POPTR_0012s08330 (11)	scaffold_12:9405847-9406293(-) (11)	NA	Q9D7P6	"Iron-sulfur cluster assembly enzyme ISCU, mitochondrial"	AT4G22220.1	SufE/NifU family protein 	LOC_Os01g47340.1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"	Medtr3g114000.1	FeS cluster assembly scaffold IscU 	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.1459.3.A1_a_at	A	A1TS	POPTR_0015s08860	POPTR_0015s08860 (11)	scaffold_15:10208221-10208547(-) (11)	NA	Q9D7P6	"Iron-sulfur cluster assembly enzyme ISCU, mitochondrial"	AT4G22220.1	SufE/NifU family protein 	LOC_Os01g47340.1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"	Medtr3g114000.1	FeS cluster assembly scaffold IscU 	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.1459.4.S1_a_at	A	A1TS	POPTR_0015s08850	POPTR_0015s08850 (11)	scaffold_15:10201841-10202063(-) (11)	NA	Q12056	"Iron sulfur cluster assembly protein 2, mitochondrial"	AT4G22220.1	SufE/NifU family protein 	LOC_Os01g47340.1	"iron-sulfur cluster assembly enzyme ISCU, mitochondrial precursor, putative, expressed"	Medtr3g114000.1	FeS cluster assembly scaffold IscU 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14590.1.A1_at	A	A1TS	POPTR_0005s18880	POPTR_0005s18880 (9)	scaffold_5:17284426-17284950(-) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr8g099260.1	"Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.145919.1.S1_s_at	A	A1TS	POPTR_0002s02100	POPTR_0002s02100 (11)	scaffold_2:1136006-1136325(-) (11)	NA	O04369	Rac-like GTP-binding protein RAC1	AT4G35020.3	RAC-like 3 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.145921.1.S1_at	A	A1TS	POPTR_0002s13810	POPTR_0002s13810 (9)	scaffold_2:10227469-10227895(-) (9)	NA	Q20390	Palmitoyl-protein thioesterase 1	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g01150.2	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008474|palmitoyl-(protein) hydrolase activity	NA
PtpAffx.145921.2.S1_a_at	A	A1TS	POPTR_0002s13810	POPTR_0002s13810 (11)	scaffold_2:10228793-10231607(-) (11)	NA	Q20390	Palmitoyl-protein thioesterase 1	AT3G60340.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g01150.2	"palmitoyl-protein thioesterase 1 precursor, putative, expressed"	Medtr5g013120.1	Palmitoyl protein thioesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008474|palmitoyl-(protein) hydrolase activity	NA
PtpAffx.145936.1.S1_at	A	A1TS	POPTR_1788s00200	POPTR_1788s00200 (11)	scaffold_1788:3136-3381(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145960.1.A1_at	A	A1TS	POPTR_0012s12910	POPTR_0012s12910 (11)	scaffold_12:13275334-13276522(-) (11)	NA	Q5N2J3	Sec-independent protein translocase protein tatA/E homolog	AT5G52440.1	Bacterial sec-independent translocation protein mttA/Hcf106 	LOC_Os11g37130.1	"mttA/Hcf106 family protein, putative, expressed"	Medtr1g126690.1	Twin-arginine translocation protein TatA/E 	GO:0015031|protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.145974.1.A1_at	A	A1TS	POPTR_0016s02270	POPTR_0016s02270 (11)	scaffold_16:1098834-1107906(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145980.1.S1_s_at	A	A1TS	POPTR_0013s11520	POPTR_0013s11520 (11)	scaffold_13:12136275-12138720(-) (11)	NA	NA	NA	AT4G09510.1	cytosolic invertase 2 	LOC_Os02g34560.1	"plant neutral invertase domain containing protein, expressed"	Medtr1g122200.1	"Plant neutral invertase; Glycoside transferase, six-hairpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145983.1.S1_at	A	A1TS	POPTR_0002s11520	POPTR_0002s11520 (11)	scaffold_2:8574423-8576678(+) (11)	NA	O48651	Squalene monooxygenase	AT1G58440.1	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g12910.1	"squalene monooxygenase, putative, expressed"	Medtr4g122000.1	Fumarate lyase; FAD dependent oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0004506|squalene monooxygenase activity	GO:0016021|integral to membrane
PtpAffx.145992.1.S1_at	A	A1TS	POPTR_0019s01580	POPTR_0019s01580 (11)	scaffold_19:1400987-1402740(+) (11)	NA	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G63710.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g49620.5	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr4g144240.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.145996.1.S1_at	A	A1TS	POPTR_0007s06500	POPTR_0007s06500 (9)	scaffold_7:4868415-4869564(-) (9)	NA	NA	NA	AT5G10010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). 	LOC_Os04g56590.1	"ATP/GTP binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145997.1.S1_at	A	A1TS	POPTR_0001s11890	POPTR_0001s11890 (10)	scaffold_1:9215352-9216047(-) (10)	NA	NA	NA	AT2G02370.2	SNARE associated Golgi protein family 	LOC_Os03g25750.1	"SNARE associated Golgi protein, putative, expressed"	Medtr2g034030.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.145998.1.S1_at	A	A1TS	POPTR_0018s01110	POPTR_0018s01110 (10)	scaffold_18:1008017-1008389(-) (10)	NA	Q93Z92	E3 ubiquitin-protein ligase At4g11680	AT4G32600.1	RING/U-box superfamily protein 	LOC_Os05g08610.4	"zinc finger family protein, putative, expressed"	Medtr1g012860.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1460.1.S1_at	A	A1TS	POPTR_0001s18990	POPTR_0001s18990 (11)	scaffold_1:16240265-16240839(+) (11)	NA	P40234	Casein kinase I homolog 2	AT2G25760.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g008170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14600.1.S1_at	A	A1MA	POPTR_0004s19870	POPTR_0004s19870 (9)	scaffold_4:19557338-19557850(+) (9)	POPTR_0004s19830 (6)	Q9SD53	UPF0481 protein At3g47200	AT5G22540.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146006.1.S1_at	A	A1TS	POPTR_0005s08240	POPTR_0005s08240 (10)	scaffold_5:5677449-5680168(+) (10)	NA	Q9NQG5	Regulation of nuclear pre-mRNA domain-containing protein 1B	AT5G65180.1	ENTH/VHS family protein 	LOC_Os04g54420.1	"protein of unknown function, DUF618 domain containing protein, expressed"	Medtr3g101010.1	Regulation of nuclear pre-mRNA protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146007.1.S1_at	A	A1TS	POPTR_0014s16870	POPTR_0014s16870 (10)	scaffold_14:12992577-12992837(-) (10)	NA	Q9SSE5	Zinc finger protein CONSTANS-LIKE 9	AT3G07650.4	CONSTANS-like 9 	LOC_Os06g19444.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr3g106670.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.14602.1.S1_at	A	A1TS	POPTR_0005s21550	POPTR_0005s21550 (11)	scaffold_5:20676689-20676732(+) (11)	NA	Q6NPF9	"Thioredoxin Y1, chloroplastic"	AT1G76760.1	thioredoxin Y1 	LOC_Os01g73234.2	"thioredoxin, putative, expressed"	Medtr1g125070.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.146022.1.A1_at	A	A1TS	POPTR_0002s00770	POPTR_0002s00770 (11)	scaffold_2:353359-353780(-) (11)	NA	NA	NA	AT1G20830.1	multiple chloroplast division site 1 	LOC_Os04g49540.1	expressed protein	Medtr3g159930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146028.1.S1_at	A	A1TS	POPTR_0002s23910	POPTR_0002s23910 (11)	scaffold_2:21389580-21390472(-) (11)	NA	NA	NA	AT5G13970.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g32580.1	expressed protein	Medtr7g097090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146048.1.A1_at	A	A1TS	POPTR_0004s01710	POPTR_0004s01710 (11)	scaffold_4:1025658-1026484(-) (11)	NA	P62283	Abnormal spindle-like microcephaly-associated protein homolog	AT4G21820.1	binding;calmodulin binding 	LOC_Os07g33370.1	"IQ calmodulin-binding motif family protein, expressed"	Medtr8g146600.1	IQ calmodulin-binding region; Calponin-like actin-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146050.1.S1_s_at	A	A1TS	POPTR_0006s22530	POPTR_0006s22530 (11)	scaffold_6:21528453-21529868(+) (11)	NA	O82039	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY	AT3G11540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os08g44510.1	"UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146058.1.A1_at	A	A1TS	POPTR_0012s08280	POPTR_0012s08280 (11)	scaffold_12:9357641-9358122(+) (11)	NA	Q9FM03	Dof zinc finger protein DOF5.6	AT5G62940.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr3g113950.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.146058.2.A1_at	A	A1TS	POPTR_0012s08290	POPTR_0012s08290 (10)	scaffold_12:9356152-9356614(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146077.1.S1_at	A	A1TS	POPTR_0005s23900	POPTR_0005s23900 (10)	scaffold_5:22610125-22611253(-) (10)	NA	Q99090	Light-inducible protein CPRF2	AT4G02640.2	bZIP transcription factor family protein 	LOC_Os03g58250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g140980.1	"Light-inducible protein CPRF-2, related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.146083.1.S1_s_at	A	A1TS	POPTR_0005s23610	POPTR_0005s23610 (11)	scaffold_5:22330882-22331182(+) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146084.1.S1_at	A	A1TS	POPTR_0005s25010	POPTR_0005s25010 (11)	scaffold_5:23377283-23377684(-) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT1G47270.2	tubby like protein 6 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146086.1.S1_s_at	A	A1TS	POPTR_0010s13240	POPTR_0010s13240 (11)	scaffold_10:13107836-13111941(-) (11)	NA	Q39ZL8	Cysteinyl-tRNA synthetase	AT5G38830.1	"Cysteinyl-tRNA synthetase, class Ia family protein "	LOC_Os09g38420.1	"cysteinyl-tRNA synthetase, putative, expressed"	Medtr1g140620.1	"Cysteinyl-tRNA synthetase, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006423|cysteinyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0004817|cysteine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.146088.1.S1_at	A	A2TS	POPTR_0008s03690	POPTR_0008s03690 (11)//POPTR_0010s23200 (11)	scaffold_10:19830318-19831268(+) (11)//scaffold_8:2004505-2005440(-) (11)	NA	O27555	Putative arsenical pump-driving ATPase	AT3G10350.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g51100.1	"arsenical pump-driving ATPase, putative, expressed"	Medtr1g120500.1	Anion-transporting ATPase 	GO:0006875|cellular metal ion homeostasis	GO:0005524|ATP binding	NA
PtpAffx.146099.1.S1_at	A	A1TS	POPTR_0003s07180	POPTR_0003s07180 (9)	scaffold_3:8779809-8781468(-) (9)	NA	O43670	Zinc finger protein 207	AT1G30970.1	zinc finger (C2H2 type) family protein 	LOC_Os09g38790.3	"ZOS9-19 - C2H2 zinc finger protein, expressed"	Medtr4g156140.1	"Zinc finger, BED-type predicted; Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.146121.1.S1_s_at	A	A1TS	POPTR_0004s08050	POPTR_0004s08050 (11)	scaffold_4:6576782-6576948(+) (11)	NA	Q6INR1	Eukaryotic translation initiation factor 3 subunit J	AT1G66070.2	Translation initiation factor eIF3 subunit 	LOC_Os02g02990.1	"translation initiation factor eIF3 subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14614.1.S1_at	A	A1TS	POPTR_0018s06550	POPTR_0018s06550 (10)	scaffold_18:6493197-6493701(-) (10)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g29150.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.146146.1.S1_at	A	A2TS	POPTR_0002s14310	POPTR_0002s14310 (11)//POPTR_0002s14300 (9)	scaffold_2:10575627-10579659(+) (11)//scaffold_2:10579727-10581196(+) (9)	NA	NA	NA	AT3G15351.1	unknown protein; Has 50 Blast hits to 50 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g30220.1	expressed protein	Medtr4g121260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146151.1.S1_at	A	A1TS	POPTR_0006s23370	POPTR_0006s23370 (11)	scaffold_6:22119017-22119866(-) (11)	NA	P40343	Vacuolar protein sorting-associated protein 27	AT2G26210.3	Ankyrin repeat family protein 	LOC_Os07g42640.2	"FYVE zinc finger family protein, expressed"	Medtr8g133500.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146151.1.S1_s_at	A	A1TS	POPTR_0006s23370	POPTR_0006s23370 (11)	scaffold_6:22118784-22120077(-) (11)	NA	P40343	Vacuolar protein sorting-associated protein 27	AT2G26210.3	Ankyrin repeat family protein 	LOC_Os07g42640.2	"FYVE zinc finger family protein, expressed"	Medtr8g133500.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146152.1.S1_at	A	A1TS	POPTR_0005s27120	POPTR_0005s27120 (11)	scaffold_5:24916011-24916988(-) (11)	POPTR_0002s01250 (6)	Q6NPN9	WD repeat-containing protein DWA2	AT1G20540.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os08g44010.5	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146165.2.S1_at	A	A1MS	POPTR_0005s05900	POPTR_0005s05900 (11)	scaffold_5:3875304-3875759(+) (11)	NA	Q10Y48	Uridylate kinase	AT3G18680.1	Amino acid kinase family protein 	LOC_Os01g73450.1	"amino acid kinase, putative, expressed"	Medtr4g142340.1	Aspartate/glutamate/uridylate kinase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process	NA	NA
PtpAffx.146172.1.S1_at	A	A1TS	POPTR_0005s19200	POPTR_0005s19200 (11)	scaffold_5:17820884-17823276(+) (11)	NA	Q5RC80	RNA-binding protein 39	AT5G09880.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.146175.1.S1_s_at	A	A1TS	POPTR_0006s28990	POPTR_0006s28990 (11)	scaffold_6:26489774-26492288(-) (11)	NA	Q03194	Plasma membrane ATPase 4	AT2G24520.1	H(+)-ATPase 5 	LOC_Os04g56160.1	"plasma membrane ATPase, putative, expressed"	Medtr3g133380.1	E1-E2 ATPase-associated region 	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.146199.1.A1_at	A	A1TS	POPTR_0004s18230	POPTR_0004s18230 (11)	scaffold_4:18203445-18203481(+) (11)	NA	Q28G05	Pre-mRNA-splicing factor syf2	AT2G16860.1	GCIP-interacting family protein 	LOC_Os06g49740.1	"pre-mRNA-splicing factor syf2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146199.1.A1_s_at	A	A1TS	POPTR_0004s18230	POPTR_0004s18230 (11)	scaffold_4:18203053-18203564(+) (11)	NA	Q28G05	Pre-mRNA-splicing factor syf2	AT2G16860.1	GCIP-interacting family protein 	LOC_Os06g49740.1	"pre-mRNA-splicing factor syf2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146199.2.S1_s_at	A	A1TS	POPTR_0004s18230	POPTR_0004s18230 (11)	scaffold_4:18201686-18202170(+) (11)	NA	Q28G05	Pre-mRNA-splicing factor syf2	AT2G16860.1	GCIP-interacting family protein 	LOC_Os06g49740.1	"pre-mRNA-splicing factor syf2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146199.3.A1_s_at	A	A1TS	POPTR_0004s18230	POPTR_0004s18230 (11)	scaffold_4:18202892-18203688(+) (11)	NA	Q28G05	Pre-mRNA-splicing factor syf2	AT2G16860.1	GCIP-interacting family protein 	LOC_Os06g49740.1	"pre-mRNA-splicing factor syf2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14620.1.S1_at	A	A1TS	POPTR_0014s02030	POPTR_0014s02030 (11)	scaffold_14:1785274-1785844(+) (11)	NA	Q948Z4	Snakin-1	AT5G59845.1	Gibberellin-regulated family protein 	LOC_Os03g55290.1	"GASR3 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr1g023670.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146202.1.A1_at	A	A1TS	POPTR_0005s26130	POPTR_0005s26130 (11)	scaffold_5:24221103-24221279(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr1g031210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146214.1.S1_at	A	A1TS	POPTR_0004s01660	POPTR_0004s01660 (11)	scaffold_4:1006252-1006747(-) (11)	NA	Q9ZS97	"UPF0051 protein ABCI8, chloroplastic"	AT4G04770.1	ATP binding cassette protein 1 	LOC_Os01g61400.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr7g029700.1	FeS assembly protein SufB 	GO:0016226|iron-sulfur cluster assembly	GO:0005515|protein binding	NA
PtpAffx.146219.1.S1_at	A	A1TS	POPTR_0014s09940	POPTR_0014s09940 (11)	scaffold_14:7456291-7457823(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT2G46710.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os04g48790.1	"rhoGAP domain containing protein, expressed"	Medtr8g029150.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.14623.1.A1_at	A	A1TS	POPTR_0007s00880	POPTR_0007s00880 (11)	scaffold_7:451718-452670(+) (11)	NA	Q6YXY2	Probable histone acetyltransferase HAC-like 1	AT1G05690.1	BTB and TAZ domain protein 3 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr5g015750.1	"Zinc finger, TAZ-type; BTB/POZ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.14623.2.A1_at	A	A1TS	POPTR_0017s04240	POPTR_0017s04240 (11)	scaffold_17:3275447-3276450(+) (11)	NA	Q6YXY2	Probable histone acetyltransferase HAC-like 1	AT1G05690.1	BTB and TAZ domain protein 3 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr5g015750.1	"Zinc finger, TAZ-type; BTB/POZ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.146247.1.S1_s_at	A	A1TS	POPTR_0001s19360	POPTR_0001s19360 (11)	scaffold_1:16999048-16999236(-) (11)	NA	Q41142	Phospholipase D alpha 1	AT1G52570.1	phospholipase D alpha 2 	LOC_Os01g07760.2	"phospholipase D, putative, expressed"	Medtr2g126370.1	"C2; Peptidase, cysteine peptidase active site "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.146249.1.S1_s_at	A	A1TS	POPTR_0013s00760	POPTR_0013s00760 (11)	scaffold_13:393416-394129(-) (11)	POPTR_0005s01370 (8)	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.146250.1.S1_at	A	A1TS	POPTR_0010s10050	POPTR_0010s10050 (11)	scaffold_10:10645018-10645441(-) (11)	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.146264.1.S1_at	A	A1TS	POPTR_0008s16490	POPTR_0008s16490 (11)	scaffold_8:11066507-11069234(-) (11)	NA	Q9LSW2	Actin-related protein 9	AT5G43500.2	actin-related protein 9 	LOC_Os04g09860.2	"actin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14629.1.S1_at	A	A1TS	POPTR_0019s05890	POPTR_0019s05890 (11)	scaffold_19:6311700-6312164(+) (11)	NA	Q9FKJ0	F-box/kelch-repeat protein At5g60570	AT5G60570.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g52830.2	"OsFBK15 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g110510.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1463.1.S1_at	A	A1TS	POPTR_0001s38900	POPTR_0001s38900 (11)	scaffold_1:38145756-38146215(-) (11)	NA	P22242	Desiccation-related protein PCC13-62	AT3G62730.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits to 172 proteins in 41 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g22470.1	"desiccation-related protein PCC13-62 precursor, putative, expressed"	Medtr2g037730.1	"Desiccation-related protein PCC13-62 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14630.1.A1_at	A	A1TS	POPTR_0005s10960	POPTR_0005s10960 (11)	scaffold_5:7877886-7879378(+) (11)	NA	NA	NA	AT2G17710.1	unknown protein; Has 39 Blast hits to 39 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g47310.1	expressed protein	Medtr5g022960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146301.1.S1_s_at	A	A1TS	POPTR_0012s07060	POPTR_0012s07060 (11)	scaffold_12:7740083-7740561(+) (11)	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g51080.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146348.1.A1_at	A	A1TS	POPTR_0002s11010	POPTR_0002s11010 (11)	scaffold_2:8023139-8023236(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g127510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146348.1.A1_s_at	A	A1TS	POPTR_0002s11010	POPTR_0002s11010 (11)	scaffold_2:8023225-8023410(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g127510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146350.1.A1_s_at	A	A1TS	POPTR_0010s05860	POPTR_0010s05860 (9)	scaffold_10:7313880-7315472(+) (9)	NA	NA	NA	AT3G26360.1	Ribosomal protein S21 family protein 	LOC_Os03g48830.1	"ribosomal protein-related, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.146357.1.A1_at	A	A1TS	POPTR_0005s12380	POPTR_0005s12380 (11)	scaffold_5:9136581-9137130(-) (11)	NA	O23225	U-box domain-containing protein 5	AT4G36550.1	ARM repeat superfamily protein 	LOC_Os02g47670.2	"bg55, putative, expressed"	Medtr5g020450.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.146379.1.A1_at	A	A1TS	POPTR_0003s13400	POPTR_0003s13400 (11)	scaffold_3:13797309-13797585(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146387.1.A1_at	A	A1TS	POPTR_0014s10080	POPTR_0014s10080 (10)	scaffold_14:7562492-7562952(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146388.1.A1_at	A	A1TS	POPTR_0001s14920	POPTR_0001s14920 (11)	scaffold_1:11753329-11758543(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50160.1	Plant protein of unknown function (DUF247) 	LOC_Os01g21650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146429.1.A1_at	A	A1TS	POPTR_0011s10040	POPTR_0011s10040 (11)	scaffold_11:12499400-12499901(+) (11)	NA	P42698	"DNA-damage-repair/toleration protein DRT111, chloroplastic"	AT1G30480.1	D111/G-patch domain-containing protein 	LOC_Os01g34190.1	"G-patch domain containing protein, expressed"	Medtr4g115110.1	D111/G-patch; RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.146445.1.A1_at	A	A1TS	POPTR_0007s12130	POPTR_0007s12130 (11)	scaffold_7:12453121-12454155(+) (11)	NA	O64827	Histone-lysine N-methyltransferase SUVR5	AT2G23740.2	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding 	LOC_Os02g47900.1	"SET domain protein SDG117, putative, expressed"	Medtr5g018800.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.14646.1.A1_a_at	A	A1MS	POPTR_0004s22120	POPTR_0004s22120 (11)	scaffold_4:21062753-21063174(+) (11)	NA	Q9FGZ9	Ubiquitin-like protein 5	AT3G45180.1	Ubiquitin-like superfamily protein 	LOC_Os11g04880.1	"ubiquitin-like protein 5, putative, expressed"	Medtr3g105020.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146463.2.A1_s_at	A	A1TS	POPTR_0018s06270	POPTR_0018s06270 (11)	scaffold_18:6004131-6004205(+) (11)	NA	NA	NA	AT4G13370.1	Plant protein of unknown function (DUF936) 	LOC_Os11g02740.1	expressed protein	Medtr4g092550.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146468.1.A1_at	A	A1TS	POPTR_0013s04140	POPTR_0013s04140 (11)	scaffold_13:2767074-2767497(+) (11)	NA	Q9ZTP3	Protein EIN4	AT3G04580.2	"Signal transduction histidine kinase, hybrid-type, ethylene sensor "	LOC_Os04g08740.2	"ethylene receptor, putative, expressed"	Medtr1g093360.1	"Tripartite hybrid signal transduction histidine kinase, BarA type; Bacteriophytochrome "	"GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023052|signaling||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0005524|ATP binding||GO:0000156|two-component response regulator activity||GO:0000155|two-component sensor activity	GO:0016020|membrane
PtpAffx.146472.1.A1_at	A	A1TS	POPTR_0005s08000	POPTR_0005s08000 (11)	scaffold_5:5502479-5503138(-) (11)	NA	P33050	Pollen-specific protein C13	AT4G08685.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os04g32680.1	"POEI20 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr3g101320.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146473.1.A1_at	A	A1TS	POPTR_0010s14530	POPTR_0010s14530 (11)	scaffold_10:14102984-14103258(-) (11)	NA	P24068	Ocs element-binding factor 1	AT3G30530.1	basic leucine-zipper 42 	LOC_Os02g49560.1	"bZIP transcription factor domain containing protein, expressed"	AC146721_11.1	"bZIP transcription factor, bZIP_1 AC146721.7 56450-55611 E EGN_Mt090430 200"	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.146475.1.A1_a_at	A	A1TS	POPTR_0009s16410	POPTR_0009s16410 (11)	scaffold_9:12471466-12471584(-) (11)	NA	Q9H0G5	Coiled-coil domain-containing protein 55	AT2G27285.1	Coiled-coil domain-containing protein 55 (DUF2040) 	LOC_Os04g35910.1	"coiled-coil domain-containing protein 55, putative, expressed"	Medtr5g102580.1	"Coiled-coil domain-containing protein 55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146475.2.A1_at	A	A1TS	POPTR_0009s16410	POPTR_0009s16410 (9)	scaffold_9:12471434-12471479(-) (9)	NA	Q9H0G5	Coiled-coil domain-containing protein 55	AT2G27285.1	Coiled-coil domain-containing protein 55 (DUF2040) 	LOC_Os04g35910.1	"coiled-coil domain-containing protein 55, putative, expressed"	Medtr5g102580.1	"Coiled-coil domain-containing protein 55, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14648.1.S1_s_at	A	A1TS	POPTR_0005s05870	POPTR_0005s05870 (11)	scaffold_5:3834521-3835018(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g143990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146481.1.A1_at	A	A1TS	POPTR_0006s24380	POPTR_0006s24380 (11)	scaffold_6:22998767-22999269(-) (11)	NA	P53259	"Rhomboid protein 1, mitochondrial"	AT1G18600.1	RHOMBOID-like protein 12 	LOC_Os01g55740.1	"OsRhmbd4 - Putative Rhomboid homologue, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.146483.1.A1_at	A	A1TS	POPTR_0004s03590	POPTR_0004s03590 (10)	scaffold_4:2490206-2491102(-) (10)	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.146495.1.A1_at	A	A1TS	POPTR_0018s09140	POPTR_0018s09140 (11)	scaffold_18:10037457-10037900(+) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G28880.1	casein kinase I-like 3 	LOC_Os02g17910.1	"CK1_CaseinKinase_1.4 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr4g159400.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.146501.1.A1_at	A	A1TS	POPTR_0002s15430	POPTR_0002s15430 (11)	scaffold_2:11547858-11548568(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT4G16110.1	response regulator 2 	LOC_Os01g67770.1	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.14653.2.S1_a_at	A	A1TS	POPTR_0004s08110	POPTR_0004s08110 (11)	scaffold_4:6629235-6629590(-) (11)	NA	Q43644	"NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial"	AT5G37510.1	"NADH-ubiquinone dehydrogenase, mitochondrial, putative "	LOC_Os03g50540.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr3g087270.1	Ferredoxin 	GO:0055114|oxidation reduction	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity"	NA
PtpAffx.146535.1.A1_at	A	A1TS	POPTR_0017s09670	POPTR_0017s09670 (11)	scaffold_17:8332453-8332748(+) (11)	NA	NA	NA	AT5G08391.1	Protein of unknown function (DUF 3339) 	LOC_Os11g30360.1	expressed protein	Medtr4g147160.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146546.1.A1_at	A	A1TS	POPTR_0017s07500	POPTR_0017s07500 (9)	scaffold_17:5834001-5834228(-) (9)	NA	NA	NA	AT1G58120.1	BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g42834.1	"retrotransposon protein, putative, unclassified"	Medtr4g120990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146555.1.A1_at	A	A1TS	POPTR_0014s02270	POPTR_0014s02270 (11)	scaffold_14:1932282-1933068(+) (11)	NA	Q8L9J9	Probable carbohydrate esterase At4g34215	AT3G53010.1	Domain of unknown function (DUF303)  	LOC_Os03g64030.1	"receptor protein kinase, putative, expressed"	Medtr4g032150.1	"Protein of unknown function DUF303, acetylesterase putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146594.1.A1_at	A	A1TS	POPTR_0009s16190	POPTR_0009s16190 (11)	scaffold_9:12368228-12369918(+) (11)	NA	P49311	Glycine-rich RNA-binding protein GRP2A	AT2G27330.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g33810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g028670.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.146606.1.A1_at	A	A1TS	POPTR_0008s15710	POPTR_0008s15710 (10)	scaffold_8:10473961-10474328(-) (10)	NA	Q9LUH9	EPIDERMAL PATTERNING FACTOR-like protein 5	AT3G22820.1	allergen-related 	LOC_Os03g06610.1	expressed protein	Medtr5g082990.1	"allergen-like, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146609.1.A1_at	A	A1TS	POPTR_0011s10390	POPTR_0011s10390 (11)	scaffold_11:12839368-12839825(+) (11)	NA	Q9LUC3	Mitogen-activated protein kinase 19	AT3G14720.1	MAP kinase 19 	LOC_Os01g47530.2	"CGMC_MAPKCMGC_2.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	AC235677_34.1	"Serine/threonine protein kinase, active site AC235677.1 149350-144434 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.14663.2.S1_s_at	A	A1TS	POPTR_0014s16050	POPTR_0014s16050 (11)	scaffold_14:12124143-12124449(-) (11)	POPTR_0002s22060 (6)	NA	NA	AT5G35732.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g064950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14663.3.S1_at	A	A1MS	POPTR_0014s16050	POPTR_0014s16050 (11)	scaffold_14:12123904-12124084(-) (11)	NA	NA	NA	AT5G35732.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr7g064950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146630.1.A1_at	A	A1TS	POPTR_0001s35490	POPTR_0001s35490 (9)	scaffold_1:33830476-33830753(+) (9)	NA	Q6NQK2	NAC domain-containing protein 8	AT3G01600.1	NAC domain containing protein 44 	LOC_Os02g38130.1	"no apical meristem protein, putative, expressed"	Medtr5g069400.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.146636.1.A1_at	A	A1TS	POPTR_0007s09580	POPTR_0007s09580 (11)	scaffold_7:9077892-9078403(+) (11)	NA	Q9FKW4	Calcium-dependent protein kinase 28	AT5G66210.1	calcium-dependent protein kinase 28 	LOC_Os02g03410.2	"CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g021940.1	Protein kinase; EF-Hand type 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.146659.1.A1_at	A	A1TS	POPTR_0009s03430	POPTR_0009s03430 (11)	scaffold_9:4053769-4054503(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146671.1.A1_at	A	A1TS	POPTR_0017s11790	POPTR_0017s11790 (11)	scaffold_17:11636905-11637232(-) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G39865.1	Glutaredoxin family protein 	LOC_Os03g07470.1	"glutaredoxin, putative"	Medtr7g009510.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.146687.2.A1_at	A	A1TS	POPTR_0017s00560	POPTR_0017s00560 (11)	scaffold_17:252219-252643(+) (11)	NA	Q9LRR4	Putative disease resistance RPP13-like protein 1	AT3G14470.1	NB-ARC domain-containing disease resistance protein 	LOC_Os05g41290.1	"disease resistance RPP13-like protein 1, putative, expressed"	Medtr8g039520.1	NB-ARC 	GO:0006915|apoptosis	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.14669.1.S1_at	A	A1TS	POPTR_0003s21490	POPTR_0003s21490 (9)	scaffold_3:19638154-19638689(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146695.1.A1_at	A	A1TS	POPTR_0006s05180	POPTR_0006s05180 (11)	scaffold_6:3624271-3624608(-) (11)	NA	P93788	Remorin	AT3G57540.1	Remorin family protein 	LOC_Os07g38170.1	"remorin, putative, expressed"	Medtr7g110620.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146710.1.A1_at	A	A1TS	POPTR_0002s11290	POPTR_0002s11290 (10)	scaffold_2:8346737-8347897(-) (10)	NA	P58223	KH domain-containing protein At4g18375	AT1G51580.1	RNA-binding KH domain-containing protein 	LOC_Os01g13470.1	"KH domain containing protein, putative, expressed"	Medtr3g127960.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.146713.1.A1_at	A	A1TS	POPTR_0002s06850	POPTR_0002s06850 (10)	scaffold_2:4601270-4601750(-) (10)	NA	NA	NA	NA	NA	LOC_Os01g64720.1	expressed protein	Medtr6g038720.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14672.1.A1_a_at	A	A1TS	POPTR_0006s02000	POPTR_0006s02000 (9)	scaffold_6:1227431-1230458(-) (11)//scaffold_6:1230277-1230364(-) (9)	POPTR_0006s02010 (8)	NA	NA	AT4G16380.1	Heavy metal transport/detoxification superfamily protein  	NA	NA	Medtr8g148830.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.146729.1.A1_at	A	A1MS	POPTR_0004s04410	POPTR_0004s04410 (11)	scaffold_4:3171275-3171548(+) (11)	NA	Q9M020	Lectin-domain containing receptor kinase A4.2	AT4G04960.1	Concanavalin A-like lectin protein kinase family protein 	LOC_Os04g44910.1	"receptor like protein kinase, putative, expressed"	Medtr2g017340.1	Protein kinase; Concanavalin A-like lectin/glucanase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.146737.1.A1_at	A	A1TS	POPTR_0014s16890	POPTR_0014s16890 (9)	scaffold_14:13020963-13021211(-) (9)	NA	Q8GUM4	Uncharacterized membrane protein At3g27390	AT4G12680.1	unknown protein; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 103 Blast hits to 103 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g19630.2	"steroid nuclear receptor, ligand-binding, putative, expressed"	Medtr3g106920.1	"Steroid nuclear receptor, ligand-binding, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146738.1.A1_at	A	A1TA	POPTR_0004s12460	POPTR_0004s12460 (9)	scaffold_4:11557074-11557394(+) (9)	NA	Q4R1I9	"Anthocyanidin 5,3-O-glucosyltransferase"	AT3G16520.3	UDP-glucosyl transferase 88A1 	LOC_Os06g18670.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr6g025520.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146767.1.A1_at	A	A1TS	POPTR_0012s12880	POPTR_0012s12880 (11)	scaffold_12:13257266-13257353(+) (11)	NA	NA	NA	AT5G23950.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os08g44850.1	"C2 domain containing protein, putative, expressed"	Medtr3g093200.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146769.1.A1_at	A	A1TS	POPTR_0002s07590	POPTR_0002s07590 (10)	scaffold_2:5187143-5187492(-) (10)	NA	Q9LRV2	Pentatricopeptide repeat-containing protein At3g26540	AT3G26540.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g35650.1	"pentatricopeptide, putative, expressed"	Medtr7g083620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14677.1.A1_at	A	A1TS	POPTR_0001s17010	POPTR_0001s17010 (11)	scaffold_1:13835598-13835961(+) (11)	NA	NA	NA	AT1G17455.2	ELF4-like 4 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr8g024260.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14677.2.S1_at	A	A1TS	POPTR_0003s06270	POPTR_0003s06270 (11)	scaffold_3:7732940-7733079(-) (11)	NA	NA	NA	AT1G17455.2	ELF4-like 4 	LOC_Os11g40610.5	"EARLY flowering protein, putative, expressed"	Medtr8g024260.1	Protein of unknown function DUF1313 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146774.1.A1_at	A	A1TS	POPTR_0001s09470	POPTR_0001s09470 (11)	scaffold_1:7223571-7224066(-) (11)	NA	NA	NA	AT4G00440.2	Protein of unknown function (DUF3741) 	LOC_Os03g01580.2	expressed protein	Medtr7g087380.1	"{, related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146775.2.A1_at	A	A1TS	POPTR_0001s02860	POPTR_0001s02860 (11)	scaffold_1:2260967-2262118(+) (11)	NA	Q42581	"Ribose-phosphate pyrophosphokinase 1, chloroplastic"	AT2G35390.2	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.146786.1.A1_at	A	A1TS	POPTR_0001s05160	POPTR_0001s05160 (9)	scaffold_1:3959242-3960313(+) (11)	NA	Q5NYD9	UPF0061 protein AZOSEA38000	AT5G13030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0061 (InterPro:IPR003846); Has 5046 Blast hits to 4997 proteins in 1211 species: Archae - 8; Bacteria - 2327; Metazoa - 120; Fungi - 134; Plants - 48; Viruses - 0; Other Eukaryotes - 2409 (source: NCBI BLink). 	LOC_Os06g21600.1	"selenoprotein O, putative, expressed"	Medtr1g147230.1	Protein of unknown function UPF0061 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146787.1.A1_at	A	A1TS	POPTR_0006s22580	POPTR_0006s22580 (11)	scaffold_6:21554497-21554978(-) (11)	NA	Q9FMR3	NAC domain-containing protein 90	AT5G22380.1	NAC domain containing protein 90 	LOC_Os11g05614.1	"no apical meristem protein, putative, expressed"	Medtr2g107600.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.146792.1.A1_at	A	A1TS	POPTR_0009s15230	POPTR_0009s15230 (11)	scaffold_9:11816153-11816885(-) (11)	NA	P0CE10	"Putative uncharacterized protein At4g01020, chloroplastic"	AT5G60250.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os11g01240.1	IBR domain containing protein	Medtr4g080390.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.146810.1.A1_at	A	A1TS	POPTR_0004s23110	POPTR_0004s23110 (9)	scaffold_4:21894049-21895332(+) (9)	NA	P43853	ATP phosphoribosyltransferase	AT1G09795.1	ATP phosphoribosyl transferase 2 	LOC_Os03g04169.1	"ATP phosphoribosyltransferase, putative, expressed"	Medtr8g145150.1	ATP phosphoribosyltransferase; ; 	GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0003879|ATP phosphoribosyltransferase activity	GO:0005737|cytoplasm
PtpAffx.146814.1.A1_at	A	A1TS	POPTR_0005s08300	POPTR_0005s08300 (11)	scaffold_5:5715349-5715812(+) (11)	NA	Q9ZT50	E3 ubiquitin-protein ligase RHA2A	AT1G15100.1	RING-H2 finger A2A 	LOC_Os02g45710.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g140560.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146828.1.A1_at	A	A1TS	POPTR_0001s08360	POPTR_0001s08360 (11)	scaffold_1:6370962-6371255(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146834.1.A1_at	A	A1TS	POPTR_0005s27660	POPTR_0005s27660 (11)	scaffold_5:25213485-25213783(+) (11)	NA	Q9LM69	RING-H2 finger protein ATL80	AT1G20823.1	RING/U-box superfamily protein 	LOC_Os02g46100.1	"RING-H2 finger protein, putative, expressed"	Medtr5g024680.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146847.1.A1_s_at	A	A1MS	POPTR_0013s04760	POPTR_0013s04760 (11)	scaffold_13:3273244-3273489(+) (11)	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr7g139420.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146851.1.A1_at	A	A1MS	POPTR_0004s02010	POPTR_0004s02010 (9)	scaffold_4:1275739-1276103(-) (9)	NA	Q96576	Pectinesterase 3	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g046920.1	Pectinesterase; Pectinesterase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146878.2.A1_at	A	A1TS	POPTR_0002s12285	POPTR_0002s12285 (9)	scaffold_1233:6675-6707(-) (9)//scaffold_2:445580-445612(-) (9)//scaffold_2:9114941-9114973(+) (9)	NA	NA	NA	AT1G20760.1	Calcium-binding EF hand family protein 	NA	NA	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146878.2.A1_s_at	A	A3TS	POPTR_0002s00960	POPTR_0002s12285 (11)//POPTR_0002s00960 (11)//POPTR_0002s12245 (9)	scaffold_2:461772-461950(-) (11)//scaffold_2:9083143-9083239(+) (9)//scaffold_2:9114919-9115097(+) (11)	NA	Q9HGL2	Uncharacterized calcium-binding protein C800.10c	AT1G20760.1	Calcium-binding EF hand family protein 	LOC_Os03g03830.1	"EF hand family protein, putative, expressed"	Medtr5g106770.1	EPS15 homology (EH) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146892.1.A1_at	A	A1TS	POPTR_0017s04590	POPTR_0017s04590 (9)	scaffold_17:3527732-3528691(+) (9)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os11g35040.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.146895.1.A1_at	A	A1TS	POPTR_0001s13450	POPTR_0001s13450 (11)	scaffold_1:10533707-10534398(+) (11)	NA	NA	NA	AT5G13140.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os09g32988.1	"POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr7g148430.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146896.1.A1_at	A	A1TS	POPTR_0005s22290	POPTR_0005s22290 (10)	scaffold_5:21263522-21265524(-) (11)	NA	P38812	"Phosphatidylglycerophosphatase GEP4, mitochondrial"	AT3G58830.1	haloacid dehalogenase (HAD) superfamily protein 	LOC_Os01g58390.1	"haloacid dehalogenase, putative, expressed"	Medtr3g111100.1	HAD-superfamily phosphatase subfamily IIIA 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146897.1.A1_at	A	A1TS	POPTR_0001s46910	POPTR_0001s46910 (11)	scaffold_1:47260593-47260874(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT4G20820.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.146901.1.A1_at	A	A1TS	POPTR_0018s11040	POPTR_0018s11040 (10)	scaffold_18:11858435-11858717(+) (10)	NA	O24575	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os04g42090.5	"CPuORF7 - conserved peptide uORF-containing transcript, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.146904.1.A1_at	A	A1TA	POPTR_0003s21850	POPTR_0003s21850 (10)	scaffold_3:19848768-19849259(-) (11)	NA	NA	NA	AT3G57980.1	DNA-binding bromodomain-containing protein 	NA	NA	Medtr2g071430.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14691.2.A1_at	A	A1MS	POPTR_0009s06590	POPTR_0009s06590 (11)	scaffold_9:6342702-6342880(-) (11)	NA	P76352	Uncharacterized transporter yeeO	AT3G08040.2	MATE efflux family protein 	LOC_Os03g11734.2	"MATE efflux protein, putative, expressed"	Medtr3g028600.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.146912.1.A1_at	A	A1TS	POPTR_0011s02990	POPTR_0011s02990 (11)	scaffold_11:2952400-2952916(-) (11)	NA	Q8LG58	Probable xyloglucan endotransglucosylase/hydrolase protein 16	AT3G23730.1	xyloglucan endotransglucosylase/hydrolase 16 	LOC_Os06g48160.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr8g128680.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.146922.1.A1_at	A	A1TS	POPTR_0009s10190	POPTR_0009s10190 (11)	scaffold_9:8815955-8816439(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT2G15490.3	UDP-glycosyltransferase 73B4 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr4g130290.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146922.2.A1_at	A	A1TS	POPTR_0009s10180	POPTR_0009s10180 (11)	scaffold_9:8812183-8812657(-) (11)	NA	Q8H0F2	Anthocyanin 3'-O-beta-glucosyltransferase	AT4G34131.1	UDP-glucosyl transferase 73B3 	LOC_Os01g45110.1	"anthocyanin 3-O-beta-glucosyltransferase, putative, expressed"	Medtr8g077870.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146927.1.A1_at	A	A1TS	POPTR_0006s22350	POPTR_0006s22350 (11)	scaffold_6:21385117-21385614(-) (11)	NA	Q7FAE1	Momilactone A synthase	AT4G03140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g33240.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.146934.1.A1_at	A	A1TS	POPTR_0011s04450	POPTR_0011s04450 (11)	scaffold_11:4431650-4431969(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146948.1.A1_at	A	A1TS	POPTR_0005s21370	POPTR_0005s21370 (11)	scaffold_5:20478107-20478949(+) (11)	NA	Q8S3U9	Exocyst complex component 2	AT1G76850.1	exocyst complex component sec5 	LOC_Os04g34450.1	expressed protein	Medtr3g009450.1	"Exocyst complex component 2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146961.1.A1_at	A	A1TS	POPTR_0007s01490	POPTR_0007s01490 (11)	scaffold_7:830838-831100(-) (11)	NA	NA	NA	AT5G62270.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1). 	LOC_Os01g58750.1	expressed protein	Medtr4g089720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146961.2.A1_a_at	A	A1TS	POPTR_0007s01490	POPTR_0007s01490 (11)	scaffold_7:831170-833305(-) (11)	NA	NA	NA	AT5G62270.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1). 	LOC_Os01g58750.1	expressed protein	Medtr4g089720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146962.1.A1_at	A	A1TS	POPTR_0008s18330	POPTR_0008s18330 (11)	scaffold_8:12270724-12270842(-) (11)	NA	Q9NVU7	Protein SDA1 homolog	AT1G13160.1	ARM repeat superfamily protein 	LOC_Os04g53770.1	"SDA1, putative, expressed"	Medtr3g102700.1	"SDA1; Protein of unknown function, nucleolar NUC1303, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146963.1.A1_s_at	A	A1TS	POPTR_0007s12540	POPTR_0007s12540 (11)	scaffold_7:12832317-12832591(+) (11)	NA	Q9NVU0	DNA-directed RNA polymerase III subunit RPC5	AT5G49530.1	SIN-like family protein 	LOC_Os08g16780.1	"sin-like protein conserved region containing protein, expressed"	Medtr5g026170.1	Sin-like protein conserved region 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.146965.1.A1_s_at	A	A1TS	POPTR_0018s02740	POPTR_0018s02740 (11)	scaffold_18:2438891-2440550(+) (11)	NA	Q5R7X2	U2-associated protein SR140	AT5G25060.1	RNA recognition motif (RRM)-containing protein 	LOC_Os02g08360.1	"RNA recognition motif, putative, expressed"	Medtr8g083970.1	"SWAP/Surp; DNA-binding SAP; Regulation of nuclear pre-mRNA protein; ENTH/VHS; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.146978.1.A1_at	A	A1MS	POPTR_0010s10430	POPTR_0010s10430 (11)	scaffold_10:10943846-10944241(+) (11)	NA	NA	NA	AT1G70280.2	NHL domain-containing protein 	LOC_Os02g49770.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146981.1.A1_at	A	A1MA	POPTR_0006s27850	POPTR_0006s27850 (11)	scaffold_6:25703202-25703463(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146984.1.A1_at	A	A1TS	POPTR_0002s22840	POPTR_0002s22840 (9)	scaffold_2:19846095-19846545(+) (9)	NA	Q9LYC1	Probable gibberellin receptor GID1L2	AT3G63010.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33730.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr1g111060.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.146990.1.A1_at	A	A1TS	POPTR_0008s14160	POPTR_0008s14160 (10)	scaffold_8:9350215-9350765(+) (11)	NA	P0C042	Uncharacterized protein At4g15970	AT1G14590.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os04g49590.1	"regulatory protein, putative, expressed"	Medtr1g039640.1	"Uncharacterized protein At4g15970, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146996.1.A1_at	A	A1TS	POPTR_0010s24220	POPTR_0010s24220 (11)	scaffold_10:20528261-20528824(+) (11)	NA	NA	NA	AT3G22430.1	CONTAINS InterPro DOMAIN/s: Domain of unknown function XS (InterPro:IPR005380); BEST Arabidopsis thaliana protein match is: XS domain-containing protein / XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1); Has 565 Blast hits to 510 proteins in 121 species: Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants - 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink). 	LOC_Os11g37070.1	expressed protein	Medtr1g117050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.146998.1.A1_at	A	A2TS	POPTR_0019s14960	POPTR_0019s14960 (11)//POPTR_0019s15000 (9)	scaffold_19:15589666-15590057(-) (11)//scaffold_19:15627657-15628048(-) (9)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os10g33040.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g040720.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.146999.1.A1_at	A	A1MA	POPTR_0019s01350	POPTR_0019s01350 (10)	scaffold_19:1191693-1191855(-) (10)	POPTR_0019s01470 (8)//POPTR_0019s01410 (8)	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.147.1.S1_at	A	A1TS	POPTR_0019s10190	POPTR_0019s10190 (9)	scaffold_19:11765184-11765704(+) (9)	NA	Q3AQ69	UPF0301 protein Cag_1601	AT1G33780.1	Protein of unknown function (DUF179) 	LOC_Os05g34720.1	"transcriptional regulator, putative, expressed"	Medtr3g012670.1	Protein of unknown function DUF179 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14700.1.S1_a_at	A	A1TS	POPTR_0007s06950	POPTR_0007s06950 (11)	scaffold_7:5317581-5317840(-) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G39390.2	nucleotide sugar transporter-KT 1 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr3g144540.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14700.2.S1_at	A	A1TS	POPTR_0007s06950	POPTR_0007s06950 (9)	scaffold_7:5317347-5317914(-) (10)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G39390.2	nucleotide sugar transporter-KT 1 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr3g144540.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147001.1.A1_at	A	A2TS	POPTR_0004s02560	POPTR_0499s00200 (11)//POPTR_0004s02560 (11)	scaffold_4:1695312-1695722(+) (11)//scaffold_499:9072-9482(-) (11)	NA	Q8S9L6	Cysteine-rich receptor-like protein kinase 29	AT4G21410.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 29 	LOC_Os07g43560.1	"TKL_IRAK_DUF26-lc.24 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr5g077010.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147014.1.A1_at	A	A1TA	POPTR_0006s09340	POPTR_0006s09340 (10)	scaffold_6:6866901-6867270(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147015.1.A1_at	A	A1MS	POPTR_0003s10850	POPTR_0003s10850 (10)	scaffold_3:11706739-11707063(-) (10)	NA	P83436	Conserved oligomeric Golgi complex subunit 7	AT5G51430.1	conserved oligomeric Golgi complex component-related / COG complex component-related 	LOC_Os06g45830.1	expressed protein	Medtr6g005500.1	"conserved oligomeric Golgi complex component 7-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147021.1.A1_at	A	A2TS	POPTR_0012s09150	POPTR_0357s00210 (11)//POPTR_0012s09150 (11)	scaffold_12:10211851-10212231(-) (11)//scaffold_357:5679-6059(-) (11)	NA	P51567	Serine/threonine-protein kinase AFC2	AT4G24740.1	FUS3-complementing gene 2 	LOC_Os12g27520.1	"serine/threonine-protein kinase AFC2, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147022.1.A1_at	A	A1TS	POPTR_0005s06700	POPTR_0005s06700 (11)	scaffold_5:4505989-4506337(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147023.1.A1_at	A	A1TS	POPTR_0018s02850	POPTR_0018s02850 (10)	scaffold_18:2508508-2509446(+) (10)	NA	Q9ZVR5	Putative F-box protein PP2-B2	AT2G02250.1	phloem protein 2-B2 	LOC_Os12g03740.1	"OsFBX438 - F-box domain containing protein, expressed"	Medtr1g092880.1	"Cyclin-like F-box; TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147029.1.A1_at	A	A1TS	POPTR_0014s09500	POPTR_0014s09500 (11)	scaffold_14:7054124-7054523(-) (11)	NA	Q39056	Molybdopterin biosynthesis protein CNX3	AT1G01290.2	cofactor of nitrate reductase and xanthine dehydrogenase 3 	LOC_Os04g38700.2	"molybdopterin biosynthesis protein CNX3, putative, expressed"	Medtr5g015830.1	Molybdopterin cofactor biosynthesis MoaC region 	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.147034.1.A1_at	A	A1TS	POPTR_0009s17040	POPTR_0009s17040 (10)	scaffold_9:12839606-12840858(+) (10)	NA	NA	NA	NA	NA	LOC_Os08g40120.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147036.1.A1_at	A	A1TS	POPTR_0001s39970	POPTR_0001s39970 (11)	scaffold_1:39299461-39299932(+) (11)	NA	Q9C9H7	Receptor-like protein 12	AT1G45616.1	receptor like protein 6 	LOC_Os04g40440.1	expressed protein	Medtr5g094410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
PtpAffx.147044.1.A1_at	A	A1TS	POPTR_0012s02410	POPTR_0012s02410 (11)	scaffold_12:1985402-1986598(-) (11)	NA	NA	NA	AT5G53045.1	unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os02g20280.1	conserved hypothetical protein	Medtr3g123560.1	Transcription factor Pcc1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147049.1.A1_at	A	A1TS	POPTR_0003s15220	POPTR_0003s15220 (11)	scaffold_3:15071678-15071955(-) (11)	NA	Q9Y253	DNA polymerase eta	AT5G44740.2	Y-family DNA polymerase H 	LOC_Os01g55300.1	"DNA-directed polymerase, putative, expressed"	AC235671_13.1	UMUC-like DNA-repair protein AC235671.2 55734-58183 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
PtpAffx.147052.1.A1_at	A	A1TS	POPTR_0008s10390	POPTR_0008s10390 (11)	scaffold_8:6501208-6501255(-) (11)	NA	Q0V7V2	Probable protein phosphatase 2C 42	AT3G17090.1	Protein phosphatase 2C family protein 	LOC_Os03g61690.1	"protein phosphatase 2C, putative, expressed"	Medtr2g037990.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147068.1.A1_at	A	A1TS	POPTR_0006s15920	POPTR_0006s15920 (11)	scaffold_6:13600661-13601294(+) (11)	NA	NA	NA	AT3G25910.1	Protein of unknown function (DUF1644) 	LOC_Os01g42700.5	expressed protein	Medtr8g119520.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147068.2.A1_at	A	A1TS	POPTR_0018s06600	POPTR_0018s06600 (11)	scaffold_18:6630161-6630734(-) (11)	NA	NA	NA	AT3G25910.1	Protein of unknown function (DUF1644) 	LOC_Os01g42700.5	expressed protein	Medtr8g119520.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147079.1.A1_at	A	A1TS	POPTR_0015s03550	POPTR_0015s03550 (11)	scaffold_15:3245770-3246948(-) (11)	NA	Q9LEZ3	Transcription factor BIM1	AT5G08130.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.147099.1.A1_at	A	A1TS	POPTR_0014s01720	POPTR_0014s01720 (11)	scaffold_14:1618859-1619066(-) (11)	NA	Q9H1I8	Activating signal cointegrator 1 complex subunit 2	AT1G27752.1	Ubiquitin system component Cue protein 	LOC_Os03g10750.1	"CUE domain containing protein, expressed"	Medtr1g023480.1	"T22C5.20, related "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.14710.1.A1_a_at	A	A1TS	POPTR_0001s17190	POPTR_0001s17190 (11)	scaffold_1:14042451-14042798(-) (11)	NA	Q9XI29	Uncharacterized protein At1g15400	AT1G15400.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g46500.1	expressed protein	Medtr2g126000.1	"Uncharacterized protein At1g15400, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14710.2.S1_s_at	A	A1TS	POPTR_0003s06070	POPTR_0003s06070 (11)	scaffold_3:7474078-7474360(+) (11)	NA	Q9XI29	Uncharacterized protein At1g15400	AT1G15400.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g46500.1	expressed protein	Medtr2g126000.1	"Uncharacterized protein At1g15400, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14710.3.A1_at	A	A1TS	POPTR_0001s17190	POPTR_0001s17190 (11)	scaffold_1:14041909-14042747(-) (11)	NA	Q9XI29	Uncharacterized protein At1g15400	AT1G15400.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os05g46500.1	expressed protein	Medtr2g126000.1	"Uncharacterized protein At1g15400, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147145.1.A1_at	A	A1TS	POPTR_0003s03010	POPTR_0003s03010 (11)	scaffold_3:3264837-3264964(-) (11)	NA	NA	NA	AT1G55170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). 	LOC_Os12g09089.2	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g121450.1	"Protein kinase PKN/PRK1, effector, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147145.1.A1_s_at	A	A1TS	POPTR_0003s03010	POPTR_0003s03010 (11)	scaffold_3:3265014-3265266(-) (11)	NA	NA	NA	AT1G55170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 13439 Blast hits to 8993 proteins in 828 species: Archae - 344; Bacteria - 1469; Metazoa - 6958; Fungi - 1008; Plants - 683; Viruses - 29; Other Eukaryotes - 2948 (source: NCBI BLink). 	LOC_Os12g09089.2	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g121450.1	"Protein kinase PKN/PRK1, effector, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147155.1.A1_s_at	A	A1TS	POPTR_0002s08690	POPTR_0002s08690 (11)	scaffold_2:6090075-6090248(-) (11)	NA	Q8IYB7	DIS3-like exonuclease 2	AT1G77680.1	Ribonuclease II/R family protein 	LOC_Os02g51780.1	"ribonuclease protein, putative, expressed"	Medtr5g065170.1	Ribonuclease II 	NA	GO:0004540|ribonuclease activity||GO:0003723|RNA binding	NA
PtpAffx.147163.1.A1_at	A	A1TS	POPTR_0044s00270	POPTR_0044s00270 (11)	scaffold_10:2141561-2141912(-) (11)//scaffold_10:2223265-2231830(-) (10)//scaffold_44:3805-4323(-) (11)//scaffold_44:129715-130057(-) (11)	NA	O81832	Probale G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290	AT4G27290.1	S-locus lectin protein kinase family protein 	LOC_Os04g54070.1	"receptor-like kinase, putative"	Medtr2g011200.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.147176.1.A1_at	A	A1TS	POPTR_0018s09000	POPTR_0018s09000 (11)	scaffold_18:9889650-9889747(-) (11)	NA	O80345	Cyclin-dependent kinase F-1	AT4G28980.1	CDK-activating kinase 1AT 	LOC_Os06g22820.1	"cyclin-dependent kinase F-1, putative, expressed"	Medtr6g099270.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147176.1.A1_s_at	A	A1TS	POPTR_0018s09000	POPTR_0018s09000 (11)	scaffold_18:9889810-9890142(-) (11)	NA	O80345	Cyclin-dependent kinase F-1	AT4G28980.1	CDK-activating kinase 1AT 	LOC_Os06g22820.1	"cyclin-dependent kinase F-1, putative, expressed"	Medtr6g099270.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147178.1.A1_s_at	A	A1TS	POPTR_0008s18990	POPTR_0008s18990 (11)	scaffold_8:12956388-12956804(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147190.1.A1_at	A	A1TS	POPTR_0003s09190	POPTR_0003s09190 (11)	scaffold_3:10524801-10524916(+) (11)	NA	Q7XLY8	E3 ubiquitin-protein ligase Os04g0590900	AT3G03550.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g029880.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147190.1.A1_s_at	A	A1TS	POPTR_0003s09190	POPTR_0003s09190 (11)	scaffold_3:10524638-10524780(+) (11)	NA	Q7XLY8	E3 ubiquitin-protein ligase Os04g0590900	AT3G03550.1	RING/U-box superfamily protein 	LOC_Os02g46600.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr5g029880.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147191.1.A1_at	A	A1TS	POPTR_0009s10650	POPTR_0009s10650 (10)	scaffold_9:9113247-9113317(-) (10)	NA	Q9LJL3	"Presequence protease 1, chloroplastic/mitochondrial"	AT3G19170.1	presequence protease 1 	LOC_Os02g52390.1	"M16 domain containing zinc peptidase, putative, expressed"	AC151525_23.1	"Small acid-soluble spore protein, alpha/beta type; ; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF AC151525.18 114168-104858 E EGN_Mt090430 200"	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.147194.1.A1_at	A	A1TS	POPTR_0007s02180	POPTR_0007s02180 (9)	scaffold_7:1309573-1309698(-) (9)	NA	P54967	Biotin synthase	AT2G43360.1	Radical SAM superfamily protein 	LOC_Os08g42730.1	"radical SAM enzyme, putative, expressed"	Medtr4g104400.1	Biotin and thiamin synthesis associated 	GO:0044283|small molecule biosynthetic process||GO:0009102|biotin biosynthetic process||GO:0044281|small molecule metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0004076|biotin synthase activity	NA
PtpAffx.1472.2.A1_a_at	A	A1TS	POPTR_0013s04340	POPTR_0013s04340 (11)	scaffold_13:2955000-2955474(+) (11)	NA	P92948	Cell division cycle 5-like protein	AT1G09770.1	cell division cycle 5 	LOC_Os04g28090.1	"MYB family transcription factor, putative, expressed"	Medtr5g010630.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147200.1.A1_s_at	A	A1MS	POPTR_0002s11960	POPTR_0002s11960 (11)	scaffold_2:8861284-8861772(+) (11)	NA	O22193	U-box domain-containing protein 4	AT3G01400.1	ARM repeat superfamily protein 	LOC_Os03g32100.1	"spotted leaf 11, putative, expressed"	Medtr1g023190.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147204.1.A1_at	A	A1TS	POPTR_0002s22440	POPTR_0002s22440 (10)	scaffold_2:19168784-19169273(-) (11)	NA	Q8CFY5	"Protoheme IX farnesyltransferase, mitochondrial"	AT2G44520.1	cytochrome c oxidase 10 	LOC_Os01g34390.1	"prenyltransferase, putative, expressed"	Medtr1g146440.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.147208.1.A1_at	A	A1TS	POPTR_0001s18800	POPTR_0001s18800 (11)	scaffold_1:15961072-15961565(+) (11)	NA	Q9LYD3	Dehydration-responsive element-binding protein 3	AT5G11590.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43940.1	"AP2 domain containing protein, expressed"	Medtr2g122400.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.14721.1.S1_at	A	A1TS	POPTR_0006s27540	POPTR_0006s27540 (11)	scaffold_6:25400668-25401157(+) (11)	NA	NA	NA	AT5G11070.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147219.1.A1_a_at	A	A1TS	POPTR_0010s10240	POPTR_0010s10240 (11)	scaffold_10:10803155-10803497(+) (11)	NA	Q4TU14	E3 ubiquitin-protein ligase RHF1A	AT4G14220.1	RING-H2 group F1A 	LOC_Os11g36430.3	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr2g104600.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147220.1.A1_at	A	A1MS	POPTR_0005s06030	POPTR_0005s06030 (11)	scaffold_5:3967697-3968243(+) (11)	NA	NA	NA	NA	NA	LOC_Os12g08700.1	expressed protein	Medtr4g142680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147222.1.A1_at	A	A1TS	POPTR_0005s00600	POPTR_0005s00600 (11)	scaffold_5:250868-251230(+) (11)	NA	Q40392	TMV resistance protein N	AT1G72860.1	Disease resistance protein (TIR-NBS-LRR class) family 	NA	NA	AC235567_54.1	TIR; Disease resistance protein AC235567.1 200861-205563 E EGN_Mt090430 200	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.147234.1.A1_at	A	A1TS	POPTR_0006s19740	POPTR_0006s19740 (11)	scaffold_6:18769505-18769831(-) (11)	NA	NA	NA	AT4G31830.1	unknown protein; Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g145280.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147237.1.A1_at	A	A1TS	POPTR_0009s09020	POPTR_0009s09020 (11)	scaffold_9:8112578-8113480(+) (11)	NA	NA	NA	AT1G49950.1	telomere repeat binding factor 1 	LOC_Os12g41920.3	"single myb histone, putative, expressed"	Medtr8g101640.1	"Linker histone, N-terminal; Homeodomain-like "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.147241.1.A1_s_at	A	A1TS	POPTR_0016s08040	POPTR_0016s08040 (11)	scaffold_16:5856713-5857130(+) (11)	NA	NA	NA	AT3G52710.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g127500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147253.1.A1_at	A	A1TS	POPTR_0004s17670	POPTR_0004s17670 (11)	scaffold_4:17776183-17777660(+) (11)	NA	Q9LT81	Zinc finger CCCH domain-containing protein 39	AT3G19360.1	Zinc finger (CCCH-type) family protein 	LOC_Os08g06330.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr8g119730.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.147255.1.A1_at	A	A1TS	POPTR_0019s12030	POPTR_0019s12030 (11)	scaffold_19:13189992-13190412(-) (11)	NA	P43935	Uncharacterized protein HI_0077	AT1G06240.1	Protein of unknown function DUF455 	LOC_Os01g11590.2	"uncharacterized protein HI0077, putative, expressed"	Medtr3g124330.1	Protein of unknown function DUF455 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147259.1.A1_at	A	A1TS	POPTR_0001s17180	POPTR_0001s17180 (11)	scaffold_1:14029672-14030192(-) (11)	NA	Q94AJ5	Probable polygalacturonase At1g80170	AT1G80170.1	Pectin lyase-like superfamily protein 	LOC_Os05g46510.1	"polygalacturonase, putative, expressed"	Medtr2g126040.1	"Pectolytic enzyme, Pectin lyase fold "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.147262.1.A1_at	A	A1TS	POPTR_0013s06230	POPTR_0013s06230 (11)	scaffold_13:4611676-4611910(-) (11)	NA	Q4WYG7	Protein pns1	AT3G04440.1	Plasma-membrane choline transporter family protein 	LOC_Os07g46240.1	"choline transporter-related, putative, expressed"	Medtr7g103510.1	Protein of unknown function DUF580 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147308.1.A1_at	A	A1TS	POPTR_0004s21340	POPTR_0004s21340 (11)	scaffold_4:20502197-20502740(-) (11)	NA	Q54ZW0	Putative phagocytic receptor 1b	AT1G08350.2	Endomembrane protein 70 protein family 	LOC_Os03g13380.1	"transmembrane 9 superfamily member, putative, expressed"	Medtr4g070020.1	Nonaspanin (TM9SF) 	NA	NA	GO:0016021|integral to membrane
PtpAffx.147311.1.A1_at	A	A1TA	POPTR_0009s16960	POPTR_0009s16960 (11)	scaffold_9:12792411-12792837(+) (11)	NA	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os02g13560.4	"transporter family protein, putative, expressed"	Medtr3g164110.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.147317.1.A1_at	A	A1TS	POPTR_0001s15040	POPTR_0001s15040 (11)	scaffold_1:11886924-11887141(+) (11)	NA	Q9LKI5	DNA repair endonuclease UVH1	AT5G41150.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os03g01100.1	"endonuclease, putative, expressed"	Medtr5g013620.1	ERCC4 	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0005515|protein binding||GO:0004518|nuclease activity||GO:0003677|DNA binding	NA
PtpAffx.147317.1.A1_s_at	A	A2TS	POPTR_0001s15040	POPTR_0003s03170 (11)//POPTR_0001s15040 (11)	scaffold_1:11886539-11886768(+) (11)//scaffold_3:3591861-3592090(-) (11)	NA	Q9LKI5	DNA repair endonuclease UVH1	AT5G41150.1	"Restriction endonuclease, type II-like superfamily protein "	LOC_Os03g01100.1	"endonuclease, putative, expressed"	Medtr5g013620.1	ERCC4 	GO:0044260|cellular macromolecule metabolic process||GO:0006259|DNA metabolic process	GO:0005515|protein binding||GO:0004518|nuclease activity||GO:0003677|DNA binding	NA
PtpAffx.147323.1.A1_at	A	A1TS	POPTR_0008s15390	POPTR_0008s15390 (11)	scaffold_8:10249812-10250206(-) (11)	NA	NA	NA	AT3G22530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14830.1); Has 77 Blast hits to 77 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g07670.1	expressed protein	Medtr5g006510.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147326.1.A1_at	A	A1TS	POPTR_0014s06230	POPTR_0014s06230 (11)	scaffold_14:4740799-4743343(-) (11)	NA	O22151	Golgi SNARE 12 protein	AT2G45200.1	golgi snare 12 	LOC_Os02g03450.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr4g022490.1	Vesicle transport v-SNARE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147327.1.A1_at	A	A1TS	POPTR_0017s08370	POPTR_0017s08370 (11)	scaffold_17:6884537-6886066(-) (11)	NA	NA	NA	AT2G32760.1	unknown protein; Has 229 Blast hits to 229 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 79; Fungi - 90; Plants - 49; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os06g50110.1	expressed protein	Medtr4g133650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147335.1.A1_at	A	A1TS	POPTR_0011s00960	POPTR_0011s00960 (10)	scaffold_11:497213-497708(+) (10)	NA	Q91Z38	Tetratricopeptide repeat protein 1	AT1G62390.1	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein 	LOC_Os09g04990.1	"cytoskeletal protein, putative, expressed"	Medtr8g147450.1	Octicosapeptide/Phox/Bem1p; Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147337.1.A1_at	A	A1MS	POPTR_0002s01110	POPTR_0002s01110 (11)	scaffold_2:597056-597410(+) (11)	NA	Q5R7B8	Kelch-like protein 20	AT2G30600.4	BTB/POZ domain-containing protein 	LOC_Os05g27880.2	"BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed"	Medtr5g075660.1	BTB/POZ; Galactose-binding like; ; 	GO:0007155|cell adhesion	GO:0005515|protein binding	NA
PtpAffx.147338.1.A1_a_at	A	A1TS	POPTR_0019s15270	POPTR_0019s15270 (11)	scaffold_19:15812823-15813239(-) (11)	NA	Q9ZVI3	KH domain-containing protein At2g38610	AT2G38610.2	RNA-binding KH domain-containing protein 	LOC_Os03g60110.1	"KH domain containing protein, putative, expressed"	Medtr7g080640.1	"KH, type 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147340.1.A1_at	A	A1TS	POPTR_0001s41280	POPTR_0001s41280 (11)	scaffold_1:40887987-40888401(-) (11)	NA	Q9FI00	MLO-like protein 11	AT5G53760.2	Seven transmembrane MLO family protein 	LOC_Os11g07912.1	"MLO domain containing protein, putative, expressed"	AC225519_22.1	Mlo-related protein AC225519.5 96204-99734 H EGN_Mt090430 200	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.147346.1.A1_at	A	A1TS	POPTR_0019s08660	POPTR_0019s08660 (11)	scaffold_19:10189717-10189856(+) (11)	NA	NA	NA	AT3G51580.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1768 Blast hits to 1607 proteins in 294 species: Archae - 2; Bacteria - 552; Metazoa - 381; Fungi - 236; Plants - 306; Viruses - 38; Other Eukaryotes - 253 (source: NCBI BLink). 	NA	NA	Medtr7g080400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14737.1.A1_s_at	A	A1TS	POPTR_0014s12480	POPTR_0014s12480 (11)	scaffold_14:9192022-9193272(+) (11)	NA	B8B5U8	Probable E3 ubiquitin-protein ligase BAH1-like 1	AT1G02860.1	SPX (SYG1/Pho81/XPR1) domain-containing protein 	LOC_Os07g47590.3	expressed protein	Medtr1g108520.1	"Zinc finger, RING-type; SPX, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147378.2.A1_a_at	A	A1TS	POPTR_0014s05630	POPTR_0014s05630 (11)	scaffold_14:4194753-4195883(-) (11)	NA	NA	NA	AT4G25170.1	Uncharacterised conserved protein (UCP012943) 	LOC_Os04g46480.1	expressed protein	Medtr7g040860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147379.1.A1_at	A	A1MS	POPTR_0018s06400	POPTR_0018s06400 (11)	scaffold_18:6251897-6252441(+) (11)	NA	O48788	Probable inactive receptor kinase At2g26730	AT2G26730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g42294.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g118800.1	Formate C-acetyltransferase glycine radical; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.147382.1.S1_at	A	A1TS	POPTR_0002s02540	POPTR_0002s02540 (11)	scaffold_2:1439416-1439927(-) (11)	NA	NA	NA	AT3G11290.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os07g02500.1	conserved hypothetical protein	Medtr1g031000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147382.2.A1_at	A	A1TA	POPTR_0002s02540	POPTR_0002s02540 (11)	scaffold_2:1439805-1440300(+) (11)	NA	NA	NA	AT3G11290.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11310.1); Has 720 Blast hits to 435 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 32; Plants - 682; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os07g02500.1	conserved hypothetical protein	Medtr1g031000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147399.1.A1_at	A	A1TS	POPTR_0006s07010	POPTR_0006s07010 (11)	scaffold_6:5062412-5062918(+) (11)	NA	O04196	"Isoamylase 1, chloroplastic"	AT2G39930.1	isoamylase 1 	LOC_Os08g40930.1	"Alpha amylase, catalytic domain containing protein, expressed"	Medtr4g160980.1	"Alpha amylase, catalytic region; ; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.147404.1.A1_at	A	A1TS	POPTR_0004s06240	POPTR_0004s06240 (11)	scaffold_4:4945778-4946272(+) (11)	POPTR_0004s06270 (8)	C0LGE0	Probable LRR receptor-like serine/threonine-protein kinase At1g07650	AT1G07650.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os09g17630.1	"receptor-like protein kinase 2, putative, expressed"	Medtr2g091020.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147418.1.A1_at	A	A1TS	POPTR_0015s10180	POPTR_0015s10180 (11)	scaffold_15:11183436-11183494(-) (11)	NA	Q921I2	Kelch domain-containing protein 4	AT5G50310.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g40740.1	"kelch repeat protein, putative, expressed"	Medtr2g025020.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147418.1.A1_s_at	A	A1TS	POPTR_0015s10180	POPTR_0015s10180 (11)	scaffold_15:11183657-11184799(-) (11)	NA	Q921I2	Kelch domain-containing protein 4	AT5G50310.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g40740.1	"kelch repeat protein, putative, expressed"	Medtr2g025020.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147427.1.A1_at	A	A1TS	POPTR_0010s10900	POPTR_0010s10900 (11)	scaffold_10:11284132-11284394(+) (11)	NA	Q66GP4	"Pentatricopeptide repeat-containing protein At5g13770, chloroplastic"	AT5G13770.1	Pentatricopeptide repeat (PPR-like) superfamily protein 	LOC_Os04g49350.1	"PPR repeat domain containing protein, putative, expressed"	AC233662_58.1	Pentatricopeptide repeat AC233662.1 266570-264088 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147430.1.A1_at	A	A1TS	POPTR_0012s13870	POPTR_0012s13870 (11)	scaffold_12:13825428-13825820(-) (11)	NA	Q9FJ93	Dehydration-responsive element-binding protein 1D	AT5G51990.1	C-repeat-binding factor 4 	LOC_Os04g48350.1	"dehydration-responsive element-binding protein, putative, expressed"	Medtr1g129500.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.147443.1.A1_at	A	A1MS	POPTR_0006s15460	POPTR_0006s15460 (10)	scaffold_6:12851950-12852373(+) (10)	NA	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT3G13690.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	Medtr4g160790.1	"protein kinase family protein, putative "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147445.1.A1_at	A	A1TS	POPTR_0019s11460	POPTR_0019s11460 (11)	scaffold_19:12729027-12729739(+) (11)	NA	C0LGV1	LRR receptor-like serine/threonine-protein kinase RCH1	AT1G34420.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os12g08180.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g094070.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
PtpAffx.147452.1.A1_at	A	A1TS	POPTR_0010s23050	POPTR_0010s23050 (11)	scaffold_10:19740914-19742823(+) (11)	NA	NA	NA	AT4G14145.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g17910.1	"kinesin like protein, putative, expressed"	Medtr1g120690.1	"kinesin like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147467.1.A1_at	A	A1TS	POPTR_0003s19400	POPTR_0003s19400 (10)	scaffold_3:18133973-18135123(+) (10)	NA	O43447	Peptidyl-prolyl cis-trans isomerase H	AT2G38730.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os03g59700.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g043670.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.14747.1.A1_at	A	A1TS	POPTR_0018s08840	POPTR_0018s08840 (11)	scaffold_18:9766814-9767235(+) (11)	NA	Q8S9D1	Pentatricopeptide repeat-containing protein At5g21222	AT5G21222.1	protein kinase family protein 	LOC_Os01g12810.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g009410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147493.1.A1_a_at	A	A2TS	POPTR_0002s14350	POPTR_0002s14350 (11)//POPTR_0014s05730 (11)	scaffold_14:4277218-4277992(-) (11)//scaffold_2:10621604-10622389(-) (11)	NA	NA	NA	AT3G60520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g46600.1	"zinc finger protein, putative, expressed"	Medtr8g005660.1	zinc ion binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147493.1.A1_at	A	A1TS	POPTR_0014s05730	POPTR_0014s05730 (11)	scaffold_14:4277049-4277968(-) (11)	NA	NA	NA	AT3G60520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g46600.1	"zinc finger protein, putative, expressed"	Medtr8g005660.1	zinc ion binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147493.2.A1_at	A	A1TS	POPTR_0002s14350	POPTR_0002s14350 (11)	scaffold_2:10621288-10621785(-) (11)	NA	NA	NA	AT3G60520.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g46600.1	"zinc finger protein, putative, expressed"	Medtr8g005660.1	zinc ion binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147506.1.S1_at	A	A1TS	POPTR_0010s19490	POPTR_0010s19490 (10)	scaffold_10:17373300-17373541(-) (10)	NA	NA	NA	AT3G55990.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18140.1	expressed protein	Medtr5g090300.1	"TonB box, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147509.1.A1_at	A	A1TS	POPTR_0012s06710	POPTR_0012s06710 (11)	scaffold_12:7150051-7150233(-) (11)	NA	Q6NYV9	RNA polymerase-associated protein LEO1	AT5G61150.2	leo1-like family protein 	LOC_Os12g38970.1	"VIP4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147509.1.A1_s_at	A	A1TS	POPTR_0012s06710	POPTR_0012s06710 (11)	scaffold_12:7150227-7151444(-) (11)	NA	Q6NYV9	RNA polymerase-associated protein LEO1	AT5G61150.2	leo1-like family protein 	LOC_Os12g38970.1	"VIP4, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147516.1.A1_at	A	A1MS	POPTR_0013s15640	POPTR_0013s15640 (11)	scaffold_13:15571405-15572343(-) (11)	NA	Q9LVM1	"ABC transporter B family member 25, mitochondrial"	AT5G58270.1	ABC transporter of the mitochondrion 3 	LOC_Os06g03770.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g083810.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.14753.1.A1_at	A	A1TS	POPTR_0018s10430	POPTR_0018s10430 (9)	scaffold_18:11354041-11354448(-) (11)	NA	Q40374	Pathogenesis-related protein PR-1	AT4G25780.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os02g54560.1	"SCP-like extracellular protein, expressed"	Medtr8g128350.1	Allergen V5/Tpx-1 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147539.1.A1_at	A	A1TS	POPTR_0002s01100	POPTR_0002s01100 (11)	scaffold_2:586797-587462(+) (11)	NA	Q9SFW6	Cyclin-B2-4	AT1G76310.1	CYCLIN B2;4 	LOC_Os06g51110.2	"cyclin, putative, expressed"	Medtr5g023690.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.147546.1.A1_at	A	A1TS	POPTR_0001s45930	POPTR_0001s45930 (10)	scaffold_1:46436469-46436712(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147547.1.A1_at	A	A1TS	POPTR_0015s05310	POPTR_0015s05310 (10)	scaffold_15:5669313-5669400(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147552.1.A1_s_at	A	A1TS	POPTR_0008s19710	POPTR_0008s19710 (11)	scaffold_8:13593618-13594175(+) (11)	NA	NA	NA	AT1G70100.4	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24160.2); Has 3305 Blast hits to 2533 proteins in 359 species: Archae - 8; Bacteria - 641; Metazoa - 1288; Fungi - 248; Plants - 240; Viruses - 42; Other Eukaryotes - 838 (source: NCBI BLink). 	LOC_Os12g17530.1	expressed protein	Medtr5g037670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147564.1.A1_at	A	A1TS	POPTR_0005s11720	POPTR_0005s11720 (11)	scaffold_5:8535838-8537830(-) (11)	NA	NA	NA	AT2G17975.1	zinc finger (Ran-binding) family protein 	LOC_Os04g02000.1	"zinc finger family protein, putative, expressed"	Medtr8g090040.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.147567.1.A1_at	A	A1TS	POPTR_0006s13350	POPTR_0006s13350 (11)	scaffold_6:10553079-10553539(-) (11)	NA	NA	NA	AT5G02970.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g17900.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr7g120960.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147580.1.A1_at	A	A1MS	POPTR_0001s10730	POPTR_0001s10730 (9)	scaffold_1:8344215-8344671(-) (9)	NA	NA	NA	AT1G64450.1	Glycine-rich protein family 	LOC_Os05g14880.1	"proline-rich family protein, putative, expressed"	Medtr5g009160.1	Harpin-induced 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147593.1.A1_s_at	A	A1TS	POPTR_0017s01700	POPTR_0017s01700 (11)	scaffold_17:1226592-1226945(+) (11)	NA	Q86GL4	Superoxide-generating NADPH oxidase heavy chain subunit B	AT1G01580.1	ferric reduction oxidase 2 	LOC_Os04g48930.4	"ferric-chelate reductase, putative, expressed"	Medtr1g126580.1	"Fe, putative "	NA	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding||GO:0005506|iron ion binding||GO:0009055|electron carrier activity	GO:0016021|integral to membrane
PtpAffx.147597.1.A1_at	A	A1TS	POPTR_0008s11820	POPTR_0008s11820 (10)	scaffold_8:7571845-7572120(+) (10)	NA	O66119	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	AT3G25860.1	2-oxoacid dehydrogenases acyltransferase family protein 	LOC_Os08g33440.1	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	AC233660_8.1	Biotin/lipoyl attachment; Dihydrolipoamide succinyltransferase AC233660.2 38835-37267 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
PtpAffx.1476.2.A1_at	A	A1TS	POPTR_0011s13380	POPTR_0011s13380 (11)	scaffold_11:16143466-16145202(+) (11)	NA	Q43472	Glycine-rich RNA-binding protein blt801	AT5G54580.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g04440.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g118370.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.147607.1.A1_at	A	A1MS	POPTR_0002s11810	POPTR_0002s11810 (9)	scaffold_2:8743109-8743427(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147608.1.A1_at	A	A1TS	POPTR_0008s13980	POPTR_0008s13980 (10)	scaffold_8:9224500-9225044(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G01940.1	C2H2-like zinc finger protein 	LOC_Os09g27650.2	"ZOS9-14 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.147620.1.A1_at	A	A1TS	POPTR_0019s08450	POPTR_0019s08450 (11)	scaffold_19:10001335-10002377(+) (11)	NA	Q42656	Alpha-galactosidase	AT3G56310.1	Melibiase family protein 	LOC_Os07g48160.1	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147634.1.A1_at	A	A1TS	POPTR_0002s00870	POPTR_0002s00870 (11)	scaffold_2:402081-403236(-) (11)	NA	Q9C8E7	Glutamate receptor 3.3	AT1G42540.1	glutamate receptor 3.3 	LOC_Os02g02540.1	"glutamate receptor, putative, expressed"	Medtr3g160070.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	GO:0006810|transport	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0030288|outer membrane-bounded periplasmic space||GO:0016020|membrane
PtpAffx.147643.1.A1_at	A	A1TS	POPTR_0008s16070	POPTR_0008s16070 (9)	scaffold_8:10732634-10733068(+) (9)	NA	Q09867	rRNA-processing protein efg1	AT1G04230.1	Protein of unknown function (DUF2361) 	LOC_Os03g58340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147661.1.S1_s_at	A	A1TS	POPTR_0005s10990	POPTR_0005s10990 (11)	scaffold_5:7904660-7905156(-) (11)	POPTR_0007s09260 (7)	Q42560	Aconitate hydratase 1	AT4G35830.1	aconitase 1 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr5g022930.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
PtpAffx.147668.1.A1_a_at	A	A1TS	POPTR_0010s24020	POPTR_0010s24020 (11)	scaffold_10:20420842-20421396(+) (11)	NA	A7ENE0	Pre-mRNA-processing ATP-dependent RNA helicase prp5	AT2G28600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g05230.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr1g068500.1	"Putative ATP-dependent RNA helicase, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147674.1.A1_at	A	A1TS	POPTR_0011s14330	POPTR_0011s14330 (11)	scaffold_11:16785437-16785861(+) (11)	NA	Q9C7S7	Endoplasmic oxidoreductin-1	AT1G72280.1	endoplasmic reticulum oxidoreductins 1 	LOC_Os03g52340.1	"endoplasmic oxidoreductin-1 precursor, putative, expressed"	Medtr2g056120.1	Endoplasmic reticulum oxidoreductin 1 	GO:0044260|cellular macromolecule metabolic process||GO:0006467|protein thiol-disulfide exchange||GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0009055|electron carrier activity||GO:0016671|""oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor""||GO:0005515|protein binding"	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.147676.1.A1_at	A	A1TS	POPTR_0006s19720	POPTR_0006s19720 (11)	scaffold_6:18758776-18759822(+) (11)	NA	Q9DBG7	Signal recognition particle receptor subunit alpha	AT4G30600.1	signal recognition particle receptor alpha subunit family protein 	LOC_Os08g37444.3	"signal recognition particle receptor, putative, expressed"	Medtr8g145240.1	"AAA ATPase; Signal recognition particle receptor, alpha subunit, N-terminal "	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0005525|GTP binding||GO:0003924|GTPase activity||GO:0005047|signal recognition particle binding||GO:0005515|protein binding	GO:0005785|signal recognition particle receptor complex||GO:0071212|subsynaptic reticulum
PtpAffx.147692.1.A1_at	A	A1TS	POPTR_0017s10470	POPTR_0017s10470 (11)	scaffold_17:9881520-9881693(+) (11)	NA	NA	NA	AT5G59710.1	VIRE2 interacting protein 2 	LOC_Os03g52594.3	"CCR4-NOT transcription factor, putative, expressed"	Medtr2g114150.1	NOT2/NOT3/NOT5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.147698.1.A1_at	A	A1MS	POPTR_0001s19120	POPTR_0001s19120 (11)	scaffold_1:16536716-16537023(+) (11)	NA	Q8LAL2	Auxin-responsive protein IAA26	AT3G16500.1	phytochrome-associated protein 1 	LOC_Os01g53880.6	"OsIAA6 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr2g122050.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.147723.1.A1_at	A	A1TS	POPTR_0003s07220	POPTR_0003s07220 (10)	scaffold_3:8809557-8809867(+) (10)	NA	O49432	Polygalacturonase QRT3	AT4G20050.2	Pectin lyase-like superfamily protein 	LOC_Os04g52320.1	"QRT3, putative, expressed"	Medtr4g089990.1	Parallel beta-helix repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147732.1.A1_at	A	A1TS	POPTR_0002s13040	POPTR_0002s13040 (10)	scaffold_2:9694619-9695326(-) (10)	NA	D0EL35	CST complex subunit CTC1	AT4G09680.1	conserved telomere maintenance component 1 	LOC_Os09g20910.1	conserved hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147739.1.A1_at	A	A1TS	POPTR_0006s08520	POPTR_0006s08520 (11)	scaffold_6:6201788-6202001(-) (11)	NA	Q9LQN6	Probable protein phosphatase 2C 4	AT1G07630.1	pol-like 5 	LOC_Os03g60650.1	"protein phosphatase 2C, putative, expressed"	Medtr7g067970.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147746.1.A1_at	A	A1TS	POPTR_0015s09430	POPTR_0015s09430 (11)	scaffold_15:10649558-10650027(+) (11)	NA	Q8LPH6	Transcription factor MYB86	AT1G57560.1	myb domain protein 50 	LOC_Os01g18240.1	"MYB family transcription factor, putative, expressed"	Medtr3g114650.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147759.1.S1_s_at	A	A1TS	POPTR_0006s13660	POPTR_0006s13660 (11)	scaffold_6:10879454-10880211(+) (11)	NA	Q9LSM5	Protein SGT1 homolog At5g65490	AT5G65490.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os08g34740.1	"SGT1 protein, putative, expressed"	AC233845_5.1	SGT1 AC233845.2 7966-12121 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147761.1.A1_at	A	A1TS	POPTR_0007s10720	POPTR_0007s10720 (11)	scaffold_7:10763776-10764162(+) (11)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G67200.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.147763.1.A1_s_at	A	A1TS	POPTR_0007s05260	POPTR_0007s05260 (11)	scaffold_7:3386288-3387379(+) (11)	NA	NA	NA	AT1G10380.1	Putative membrane lipoprotein 	LOC_Os06g25950.1	expressed protein	Medtr5g038340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147765.1.A1_at	A	A1TS	POPTR_0012s02120	POPTR_0012s02120 (11)	scaffold_12:1737421-1738566(-) (11)	NA	Q8GZ42	Histone-lysine N-methyltransferase ATX5	AT5G53430.1	SET domain group 29 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	Medtr3g124150.1	"PWWP; Nuclear protein SET; SET-related region; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14777.1.S1_at	A	A1TS	POPTR_0014s13390	POPTR_0014s13390 (11)	scaffold_14:9844478-9844926(-) (11)	NA	NA	NA	AT4G02940.1	"oxidoreductase, 2OG-Fe(II) oxygenase family protein "	LOC_Os05g33310.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.14778.1.S1_a_at	A	A1TS	POPTR_0003s08840	POPTR_0003s08840 (11)	scaffold_3:10184859-10185313(-) (11)	NA	NA	NA	AT1G32520.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 143 Blast hits to 142 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). 	LOC_Os11g11330.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr8g102900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14780.1.S1_at	A	A1TS	POPTR_0017s11800	POPTR_0017s11800 (11)	scaffold_17:11674943-11675470(+) (11)	NA	Q00466	Homeobox-leucine zipper protein HAT7	AT5G15150.1	homeobox 3 	LOC_Os03g07450.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g040020.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.147823.1.A1_a_at	A	A1TS	POPTR_0018s09560	POPTR_0018s09560 (11)	scaffold_18:10491374-10491727(-) (11)	NA	Q42525	Hexokinase-1	AT4G29130.1	hexokinase 1 	LOC_Os05g45590.1	"hexokinase, putative, expressed"	Medtr4g159960.1	Hexokinase 	GO:0005975|carbohydrate metabolic process	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0005524|ATP binding"	NA
PtpAffx.147844.1.A1_at	A	A1TS	POPTR_0018s03360	POPTR_0018s03360 (10)	scaffold_18:2963990-2964670(+) (10)//scaffold_714:1856-2536(+) (10)	POPTR_0714s00200 (8)	Q54YK1	Putative UDP-sugar transporter DDB_G0278631	AT4G31600.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os06g08860.1	"transporter family protein, putative, expressed"	Medtr3g133130.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147859.1.A1_at	A	A1TS	POPTR_0004s05960	POPTR_0004s05960 (11)	scaffold_4:4687491-4688630(-) (11)	NA	NA	NA	AT4G18810.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g13970.2	"Complex I intermediate-associated protein 30 domain containing protein, putative, expressed"	Medtr4g135590.2	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147883.1.S1_at	A	A1TS	POPTR_0011s16170	POPTR_0011s16170 (10)	scaffold_11:18098910-18099239(+) (10)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G34575.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.14790.1.A1_at	A	A1MS	POPTR_0018s11170	POPTR_0018s11170 (11)	scaffold_18:11964118-11964323(+) (11)	NA	P23326	"50S ribosomal protein L35, chloroplastic"	AT2G24090.1	Ribosomal protein L35 	LOC_Os06g43900.1	"ribosomal protein L35, putative, expressed"	Medtr8g144750.1	Ribosomal protein L35 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.14790.1.A1_s_at	A	A1TS	POPTR_0018s11170	POPTR_0018s11170 (11)	scaffold_18:11964434-11967052(+) (11)	NA	P23326	"50S ribosomal protein L35, chloroplastic"	AT2G24090.1	Ribosomal protein L35 	LOC_Os06g43900.1	"ribosomal protein L35, putative, expressed"	Medtr8g144750.1	Ribosomal protein L35 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.147900.1.S1_s_at	A	A1TS	POPTR_0011s07530	POPTR_0011s07530 (10)	scaffold_11:8368008-8369265(-) (10)	NA	P82244	"50S ribosomal protein L34, chloroplastic"	AT1G29070.1	Ribosomal protein L34 	LOC_Os01g59060.1	"50S ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.147922.1.S1_at	A	A1TS	POPTR_0019s15210	POPTR_0019s15210 (11)	scaffold_19:15772696-15773040(-) (11)	NA	Q9LVM0	Probable inactive receptor kinase At5g58300	AT5G58300.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g60330.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr3g083650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.147925.1.S1_at	A	A1TS	POPTR_0015s04380	POPTR_0015s04380 (10)	scaffold_15:4502167-4503804(-) (10)	POPTR_0012s04590 (6)	Q9C9U4	Mitogen-activated protein kinase 15	AT1G73670.1	MAP kinase 15 	LOC_Os06g49430.1	"CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g155240.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147926.1.S1_s_at	A	A1TS	POPTR_0025s00560	POPTR_0025s00560 (11)	scaffold_25:253779-255552(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.147926.2.S1_at	A	A1TS	POPTR_0006s06180	POPTR_0006s06180 (11)	scaffold_6:4396091-4397791(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
PtpAffx.147933.1.S1_at	A	A1TS	POPTR_0004s04820	POPTR_0004s04820 (11)	scaffold_4:3572952-3575111(-) (11)	NA	P53535	"Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic"	AT3G46970.1	alpha-glucan phosphorylase 2 	LOC_Os03g55090.1	"alpha-glucan phosphorylast isozyme, putative, expressed"	Medtr2g017970.1	"Glycosyl transferase, family 35; Amino acid-binding ACT "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147935.1.S1_at	A	A1TS	POPTR_0003s07550	POPTR_0003s07550 (10)	scaffold_3:9120632-9122299(+) (10)	NA	Q9FGL2	Aquaporin TIP2-3	AT5G47450.1	tonoplast intrinsic protein 2;3 	LOC_Os02g44080.1	"aquaporin protein, putative, expressed"	Medtr5g012870.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.147936.1.S1_s_at	A	A1TS	POPTR_0014s16670	POPTR_0014s16670 (11)	scaffold_14:12768379-12769420(+) (11)	NA	Q8S4Y1	"Acetyl-CoA acetyltransferase, cytosolic 1"	AT5G48230.2	acetoacetyl-CoA thiolase 2 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	Medtr5g106000.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147937.1.S1_at	A	A1TS	POPTR_0008s16320	POPTR_0008s16320 (10)	scaffold_8:10929907-10930303(-) (10)	NA	Q8RY18	MATH domain-containing protein At5g43560	AT1G04300.1	TRAF-like superfamily protein 	LOC_Os12g40520.1	"MATH domain containing protein, expressed"	Medtr1g064840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147944.1.S1_s_at	A	A2TS	POPTR_0683s00200	POPTR_0683s00200 (11)//POPTR_0010s09840 (10)	scaffold_10:10465757-10466612(+) (11)//scaffold_683:7196-7753(-) (11)	NA	A6LL96	5'-nucleotidase surE	AT4G14930.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os07g10460.2	"5-nucleotidase surE, putative, expressed"	Medtr1g132450.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.147946.1.S1_at	A	A1TS	POPTR_0001s39210	POPTR_0001s39210 (11)	scaffold_1:38414082-38414611(+) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G78570.1	rhamnose biosynthesis 1 	LOC_Os03g17000.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.147958.1.S1_at	A	A2TS	POPTR_0008s12940	POPTR_0008s12940 (11)//POPTR_0010s12190 (11)	scaffold_10:12250709-12251075(+) (11)//scaffold_8:8432611-8432982(-) (11)	NA	Q9SXS2	Probable sulfate transporter 3.3	AT1G23090.1	sulfate transporter 91 	LOC_Os04g55800.1	"sulfate transporter, putative, expressed"	AC234703_12.1	Sulphate anion transporter AC234703.1 74838-69482 E EGN_Mt090430 200	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.147961.1.S1_at	A	A1TS	POPTR_0006s11560	POPTR_0006s11560 (11)	scaffold_6:8766276-8766702(-) (11)	NA	NA	NA	AT3G52870.1	IQ calmodulin-binding motif family protein 	LOC_Os12g05420.1	"calmodulin-binding protein, putative, expressed"	Medtr2g046520.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147971.1.S1_s_at	A	A1TS	POPTR_0008s18260	POPTR_0008s18260 (11)	scaffold_8:12226985-12227789(-) (11)	POPTR_0010s06160 (7)	O04450	T-complex protein 1 subunit epsilon	AT1G24510.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g36700.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.147982.1.S1_s_at	A	A1TS	POPTR_0002s19110	POPTR_0002s19110 (11)	scaffold_14:8262749-8263252(+) (10)//scaffold_2:15034195-15034680(+) (11)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g133540.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.147996.1.S1_at	A	A1TS	POPTR_0007s06160	POPTR_0007s06160 (11)	scaffold_7:4307626-4307688(-) (11)	NA	NA	NA	AT2G22120.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os11g39130.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g100910.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.147997.1.S1_a_at	A	A2TS	POPTR_0006s07620	POPTR_0018s14070 (11)//POPTR_0006s07620 (11)	scaffold_18:14318490-14319724(-) (11)//scaffold_6:5537878-5539090(-) (11)	NA	NA	NA	AT2G19160.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g45110.1	"DNA binding protein, putative, expressed"	Medtr8g129570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.147997.1.S1_at	A	A1TS	POPTR_0018s14070	POPTR_0018s14070 (11)	scaffold_18:14317494-14320911(-) (11)	NA	NA	NA	AT2G19160.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g45110.1	"DNA binding protein, putative, expressed"	Medtr8g129570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.147997.2.S1_a_at	A	A2TS	POPTR_0006s07620	POPTR_0018s14070 (11)//POPTR_0006s07620 (11)	scaffold_18:14319663-14319724(-) (11)//scaffold_6:5539029-5539090(-) (11)	NA	NA	NA	AT2G19160.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os06g45110.1	"DNA binding protein, putative, expressed"	Medtr8g129570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.14802.1.A1_s_at	A	A1TS	POPTR_0010s21910	POPTR_0010s21910 (11)	scaffold_10:19019454-19020517(+) (11)	NA	Q9M5L0	60S ribosomal protein L35	AT2G39390.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.14802.2.A1_at	A	A1MS	POPTR_0008s04870	POPTR_0008s04870 (9)	scaffold_8:2819545-2819577(-) (9)	NA	Q9M5L0	60S ribosomal protein L35	AT2G39390.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.148023.1.S1_at	A	A1TS	POPTR_0001s00990	POPTR_0001s00990 (10)	scaffold_1:787511-790614(-) (10)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.148045.1.S1_s_at	A	A1TS	POPTR_0007s00300	POPTR_0007s00300 (10)	scaffold_7:84386-85657(-) (10)	NA	P46519	Desiccation protectant protein Lea14 homolog	AT2G44060.2	"Late embryogenesis abundant protein, group 2 "	LOC_Os07g17120.1	"late embryogenesis abundant protein, putative, expressed"	Medtr5g095950.1	Late embryogenesis abundant protein 2 	GO:0009269|response to desiccation	NA	NA
PtpAffx.148075.1.S1_s_at	A	A1MS	POPTR_0002s24330	POPTR_0002s24330 (10)	scaffold_2:21731985-21733388(+) (10)	NA	Q8LBL5	E3 ubiquitin-protein ligase PRT1	AT3G24800.1	proteolysis 1 	LOC_Os02g40810.1	"Zinc finger, ZZ type domain containing protein, expressed"	Medtr4g023530.1	"Zinc finger, ZZ-type; Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148088.1.S1_s_at	A	A1TS	POPTR_0010s04820	POPTR_0010s04820 (11)	scaffold_10:5978172-5978740(-) (11)	NA	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.14809.1.S1_at	A	A1TS	POPTR_0016s02430	POPTR_0016s02430 (11)	scaffold_16:1193010-1193683(-) (11)	NA	P42856	14 kDa zinc-binding protein	AT3G56490.1	HIS triad family protein 3 	LOC_Os01g59750.1	"histidine triad family protein, putative, expressed"	Medtr6g017890.1	Histidine triad (HIT) protein; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14809.2.S1_at	A	A2TS	POPTR_0001s46870	POPTR_0001s46870 (11)//POPTR_0011s16520 (9)	scaffold_1:47241296-47242412(+) (11)//scaffold_11:18396507-18397665(+) (9)	NA	P18025	Tubulin beta-1 chain	AT5G62700.1	tubulin beta chain 3 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.148108.1.S1_at	A	A1TS	POPTR_0006s21950	POPTR_0006s21950 (10)	scaffold_6:20914168-20915100(-) (10)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148122.1.S1_at	A	A1TS	POPTR_0010s08390	POPTR_0010s08390 (10)	scaffold_10:9325333-9326877(-) (10)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.148150.1.S1_at	A	A1TS	POPTR_0016s04900	POPTR_0016s04900 (11)	scaffold_16:2953483-2955470(-) (11)	NA	Q6DGZ0	Coiled-coil domain-containing protein 75	AT3G57910.1	D111/G-patch domain-containing protein 	LOC_Os08g39880.1	"G-patch domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
PtpAffx.148198.1.S1_at	A	A1TS	POPTR_0004s02950	POPTR_0004s02950 (10)	scaffold_4:1967008-1968027(-) (10)	NA	NA	NA	AT2G44870.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g41940.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1482.1.S1_s_at	A	A1TS	POPTR_0004s16080	POPTR_0004s16080 (11)	scaffold_4:16528800-16529838(-) (11)	NA	P31022	Ras-related protein Rab7	AT3G18820.1	RAB GTPase homolog G3F 	LOC_Os05g44050.1	"ras-related protein, putative, expressed"	Medtr4g095400.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.1482.2.S1_a_at	A	A1TS	POPTR_0009s11790	POPTR_0009s11790 (11)	scaffold_9:9711968-9712577(-) (11)	NA	P31022	Ras-related protein Rab7	AT3G18820.1	RAB GTPase homolog G3F 	LOC_Os05g44050.1	"ras-related protein, putative, expressed"	Medtr4g095400.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.148264.1.S1_at	A	A1TS	POPTR_0014s07570	POPTR_0014s07570 (11)	scaffold_14:5689776-5691135(+) (11)	NA	P37225	"NAD-dependent malic enzyme 59 kDa isoform, mitochondrial"	AT4G00570.1	NAD-dependent malic enzyme 2 	LOC_Os10g35960.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g034840.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.148281.1.S1_s_at	A	A1TS	POPTR_0013s04460	POPTR_0013s04460 (11)	scaffold_13:3058314-3059017(+) (11)	NA	Q9USQ7	Meiotically up-regulated gene 71 protein	AT3G04480.1	endoribonucleases 	LOC_Os02g56565.1	"endoribonuclease, putative, expressed"	Medtr7g135060.1	Endoribonuclease L-PSP; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148282.1.S1_s_at	A	A1TS	POPTR_0002s11250	POPTR_0002s11250 (11)	scaffold_2:8327310-8327578(+) (11)	NA	Q9ZRR5	Tubulin alpha-3 chain	AT1G50010.1	tubulin alpha-2 chain 	LOC_Os03g51600.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr8g102250.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.148326.1.S1_s_at	A	A1TS	POPTR_0011s04770	POPTR_0011s04770 (11)	scaffold_11:4741641-4741995(-) (11)	NA	Q92541	RNA polymerase-associated protein RTF1 homolog	AT1G61040.1	plus-3 domain-containing protein 	LOC_Os12g35030.1	"plus-3 domain containing protein, expressed"	Medtr7g117510.1	Plus-3 	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.148333.1.S1_s_at	A	A1TS	POPTR_0012s09060	POPTR_0012s09060 (11)	scaffold_12:10125408-10125690(+) (11)	NA	NA	NA	AT5G63040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g50830.1	expressed protein	Medtr3g114280.1	"T1N15.7, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148337.1.S1_at	A	A1TS	POPTR_0018s00880	POPTR_0018s00880 (11)	scaffold_18:829967-831995(+) (11)	POPTR_0006s26050 (6)	NA	NA	AT5G25590.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os05g32760.1	"BZIP protein, putative, expressed"	Medtr3g132720.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148338.1.S1_at	A	A1TS	POPTR_0004s16250	POPTR_0004s16250 (11)	scaffold_4:16656842-16657257(-) (11)	NA	C0LGK4	Probable LRR receptor-like serine/threonine-protein kinase At2g16250	AT2G16250.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g51440.1	"LRR receptor-like protein kinase, putative, expressed"	Medtr3g162230.1	Protein kinase-like 	NA	GO:0005515|protein binding	NA
PtpAffx.148341.1.S1_s_at	A	A1TS	POPTR_0019s09140	POPTR_0019s09140 (11)	scaffold_19:10698391-10698931(-) (11)	NA	Q9XF89	"Chlorophyll a-b binding protein CP26, chloroplastic"	AT4G10340.1	light harvesting complex of photosystem II 5 	LOC_Os11g13890.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g070180.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.148399.1.S1_at	A	A1TS	POPTR_0010s14470	POPTR_0010s14470 (11)	scaffold_10:14069489-14069877(-) (11)	NA	NA	NA	AT3G25545.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11970.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148416.1.S1_s_at	A	A1TS	POPTR_0001s22160	POPTR_0001s22160 (10)	scaffold_1:20802580-20803572(-) (10)	NA	Q3T0E5	Adipocyte plasma membrane-associated protein	AT1G08470.1	strictosidine synthase-like 3 	LOC_Os03g53950.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
PtpAffx.148421.1.S1_at	A	A1TS	POPTR_0001s41010	POPTR_0001s41010 (11)	scaffold_1:40628161-40628649(-) (11)	NA	NA	NA	AT4G27500.1	proton pump interactor 1 	LOC_Os08g30060.2	"proton pump interactor, putative, expressed"	Medtr2g100530.1	"proton pump interactor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148428.1.S1_s_at	A	A1TS	POPTR_0003s05070	POPTR_0003s05070 (10)	scaffold_3:6272360-6273215(-) (10)	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT1G52220.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	LOC_Os01g55570.1	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148436.1.S1_at	A	A1TS	POPTR_0010s25860	POPTR_0010s25860 (11)	scaffold_10:21331426-21333046(+) (11)	NA	Q9LK31	Kelch repeat-containing protein At3g27220	AT1G51540.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g41020.1	"kelch repeat protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148444.1.S1_at	A	A1TS	POPTR_0004s18970	POPTR_0004s18970 (11)	scaffold_1288:5363-5760(-) (9)//scaffold_4:18758021-18758870(-) (11)//scaffold_4:18792580-18793410(-) (11)	POPTR_0004s18960 (8)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148447.1.S1_at	A	A1TS	POPTR_0001s35220	POPTR_0001s35220 (9)	scaffold_1:33515267-33516344(+) (9)	NA	Q9LK94	"Probable monodehydroascorbate reductase, cytoplasmic isoform 2"	AT3G27820.1	monodehydroascorbate reductase 4 	LOC_Os02g47800.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.148459.1.S1_at	A	A2TS	POPTR_0019s10160	POPTR_0019s10160 (11)//POPTR_0388s00210 (11)	scaffold_19:11740122-11740654(-) (11)//scaffold_388:16407-16939(-) (11)	NA	Q69ZF3	Non-lysosomal glucosylceramidase	AT5G49900.1	"Beta-glucosidase, GBA2 type family protein "	LOC_Os11g13810.1	"non-lysosomal glucosylceramidase, putative, expressed"	Medtr1g086820.1	"Glycoside transferase, six-hairpin "	GO:0006665|sphingolipid metabolic process	GO:0004348|glucosylceramidase activity	GO:0016021|integral to membrane
PtpAffx.148460.1.S1_at	A	A1TS	POPTR_0014s00900	POPTR_0014s00900 (11)	scaffold_14:818761-819862(-) (11)	NA	Q9VCY8	ADIPOR-like receptor CG5315	AT4G37680.2	heptahelical protein 4 	LOC_Os03g13040.1	"haemolysin-III, putative, expressed"	Medtr5g015420.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
PtpAffx.148470.1.S1_at	A	A1TS	POPTR_0010s14840	POPTR_0010s14840 (11)	scaffold_10:14316304-14316788(+) (11)	NA	NA	NA	AT1G69040.2	ACT domain repeat 4 	LOC_Os03g29980.1	"ACT domain containing protein, expressed"	Medtr5g049410.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.148471.1.S1_at	A	A1TS	POPTR_0011s00790	POPTR_0011s00790 (11)	scaffold_11:407715-408164(+) (11)	NA	Q9FZ45	Uncharacterized membrane protein At1g16860	AT4G22290.1	Ubiquitin-specific protease family C19-related protein 	LOC_Os08g13350.1	expressed protein	Medtr2g029250.1	Pentaxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148480.1.S1_s_at	A	A1TS	POPTR_0017s08570	POPTR_0017s08570 (11)	scaffold_17:7156759-7157276(+) (11)	NA	Q9SVM8	"Glycine-rich RNA-binding protein 2, mitochondrial"	AT4G13850.3	glycine-rich RNA-binding protein 2 	LOC_Os10g17454.3	"RNA recognition motif containing protein, expressed"	Medtr3g105170.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.148504.1.S1_at	A	A1TS	POPTR_0017s04590	POPTR_0017s04590 (11)	scaffold_17:3523620-3526555(+) (11)	NA	Q8QZR1	Tyrosine aminotransferase	AT5G53970.1	Tyrosine transaminase family protein 	LOC_Os11g35040.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr1g114670.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.148515.1.S1_s_at	A	A1TS	POPTR_0019s04700	POPTR_0019s04700 (11)	scaffold_19:4897321-4897362(+) (11)	NA	NA	NA	AT2G39050.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os07g48500.1	"stress responsive protein, putative, expressed"	Medtr7g100110.1	"glycoamidase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148582.1.S1_at	A	A1TS	POPTR_0009s05910	POPTR_0009s05910 (11)	scaffold_9:5865553-5867046(+) (11)	NA	O16810	Origin recognition complex subunit 1	AT4G14700.1	origin recognition complex 1 	LOC_Os06g08790.1	"ORC1 - Putative origin recognition complex subunit 1, expressed"	NA	NA	NA	GO:0003677|DNA binding||GO:0005524|ATP binding	NA
PtpAffx.148585.1.S1_at	A	A1TS	POPTR_0001s27170	POPTR_0001s27170 (11)	scaffold_1:26097951-26098630(+) (11)	NA	Q9BZE9	Tether containing UBX domain for GLUT4	AT3G27310.1	plant UBX domain-containing protein 1 	LOC_Os04g40870.1	"alveolar soft part sarcoma chromosome region, candidate 1, putative, expressed"	Medtr6g024990.1	UBX 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1486.1.S1_at	A	A1TS	POPTR_0006s19750	POPTR_0006s19750 (11)	scaffold_6:18775157-18775571(-) (11)	NA	Q8W4A5	"APO protein 2, chloroplastic"	AT5G57930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os02g50010.1	"APO, putative, expressed"	Medtr2g104000.1	"Protein of unknown function DUF794, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1486.2.S1_at	A	A1TS	POPTR_0018s11560	POPTR_0018s11560 (9)	scaffold_18:12246154-12247997(-) (9)	NA	Q8W4A5	"APO protein 2, chloroplastic"	AT5G57930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os02g50010.1	"APO, putative, expressed"	Medtr2g104000.1	"Protein of unknown function DUF794, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1486.3.S1_a_at	A	A1MS	POPTR_0006s19750	POPTR_0006s19750 (11)	scaffold_6:18778154-18778421(-) (11)	NA	Q8W4A5	"APO protein 2, chloroplastic"	AT5G57930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os02g50010.1	"APO, putative, expressed"	Medtr2g104000.1	"Protein of unknown function DUF794, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148601.1.S1_s_at	A	A1TS	POPTR_0006s05210	POPTR_0006s05210 (9)	scaffold_6:3671202-3673896(-) (9)	NA	Q9LVJ7	Nuclear transcription factor Y subunit A-6	AT3G14020.1	"nuclear factor Y, subunit A6 "	LOC_Os03g48970.3	"nuclear transcription factor Y subunit, putative, expressed"	Medtr3g080680.1	"CCAAT-binding transcription factor, subunit B "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.14861.1.S1_at	A	A1TS	POPTR_0004s13060	POPTR_0004s13060 (11)	scaffold_4:12386077-12388347(-) (11)	NA	Q6FRZ3	Endoplasmic reticulum vesicle protein 25	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.148620.1.S1_s_at	A	A1TS	POPTR_0009s04880	POPTR_0009s04880 (11)	scaffold_9:5112281-5112668(-) (11)	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148643.2.A1_a_at	A	A1TS	POPTR_0014s03390	POPTR_0014s03390 (11)	scaffold_14:2726304-2726659(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT1G47490.1	RNA-binding protein 47C 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g148180.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.148676.1.S1_at	A	A3TS	POPTR_0008s18790	POPTR_0008s18810 (11)//POPTR_0008s18790 (11)//POPTR_0008s18870 (11)	scaffold_8:12821589-12822031(-) (11)//scaffold_8:12854424-12854866(-) (11)//scaffold_8:12884362-12884804(-) (11)	NA	Q9LIP4	Cytochrome P450 71B36	AT3G26320.1	"cytochrome P450, family 71, subfamily B, polypeptide 36 "	LOC_Os03g63310.1	"cytochrome P450 71E1, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.14872.1.S1_at	A	A1TS	POPTR_0014s17600	POPTR_0014s17600 (11)	scaffold_14:13861771-13862517(+) (11)	NA	NA	NA	AT3G07470.1	"Protein of unknown function, DUF538 "	LOC_Os01g68500.1	expressed protein	Medtr7g043420.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148735.1.S1_s_at	A	A1TS	POPTR_0004s04170	POPTR_0004s04170 (11)	scaffold_4:2997745-2998724(-) (11)	NA	P60027	General transcription factor IIH subunit 4	AT4G17020.1	transcription factor-related 	LOC_Os04g58350.1	"TFIIH basal transcription factor complex p52 subunit, putative, expressed"	Medtr3g097740.1	Transcription factor Tfb2 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0033554|cellular response to stress"	GO:0003702|RNA polymerase II transcription factor activity	GO:0005634|nucleus
PtpAffx.148742.1.S1_at	A	A1TS	POPTR_0010s10410	POPTR_0010s10410 (11)	scaffold_10:10927084-10928159(-) (11)	NA	NA	NA	AT2G02910.1	Protein of unknown function (DUF616) 	LOC_Os11g09170.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	AC146568_8.1	Protein of unknown function DUF616 AC146568.11 42302-43568 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148753.1.S1_s_at	A	A1TS	POPTR_0013s08910	POPTR_0013s08910 (11)	scaffold_13:8420272-8421989(+) (11)	NA	Q5PPG7	Ligatin	AT1G71350.1	eukaryotic translation initiation factor SUI1 family protein 	LOC_Os02g35160.1	"ligatin, putative, expressed"	Medtr4g031820.1	Translation initiation factor SUI1; PUA 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	NA
PtpAffx.148754.1.S1_s_at	A	A1TS	POPTR_0001s05030	POPTR_0001s05030 (11)	scaffold_1:3878247-3879131(+) (11)	NA	Q9ZPV5	Nucleolar complex protein 2 homolog	AT2G18220.1	Noc2p family 	LOC_Os10g35280.1	"nucleolar complex protein 2, putative, expressed"	Medtr1g140790.1	Protein of unknown function UPF0120 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148758.1.S1_s_at	A	A1TS	POPTR_0013s14810	POPTR_0013s14810 (11)	scaffold_13:14927690-14928071(-) (11)	NA	Q9FJC1	Putative FBD-associated F-box protein At5g53630	AT5G53635.1	F-box/RNI-like/FBD-like domains-containing protein 	LOC_Os07g06500.1	"OsFBL34 - F-box domain and LRR containing protein, expressed"	AC229702_9.1	Rhodopsin-like GPCR superfamily; Cyclin-like F-box; FBD; AC229702.6 88103-90335 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148759.1.S1_at	A	A1TS	POPTR_0002s24100	POPTR_0002s24100 (9)	scaffold_2:21542145-21542792(+) (9)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.148768.1.S1_s_at	A	A1TS	POPTR_0001s16350	POPTR_0001s16350 (11)	scaffold_1:13136615-13137080(-) (11)	NA	P34756	1-phosphatidylinositol-3-phosphate 5-kinase FAB1	AT3G14270.1	phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os08g34950.1	"chaperonin Cpn60/TCP-1, putative, expressed"	Medtr8g026550.1	"Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type "	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
PtpAffx.148770.1.S1_at	A	A1TS	POPTR_0013s10510	POPTR_0013s10510 (11)	scaffold_13:10829120-10831877(-) (11)	POPTR_0019s10040 (6)	P37142	"Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment)"	AT4G19710.2	aspartate kinase-homoserine dehydrogenase ii 	LOC_Os08g25390.1	"bifunctional aspartokinase/homoserine dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g132760.2	"Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I "	GO:0044283|small molecule biosynthetic process||GO:0008652|cellular amino acid biosynthetic process||GO:0044281|small molecule metabolic process	GO:0016597|amino acid binding||GO:0016491|oxidoreductase activity||GO:0050661|NADP or NADPH binding	NA
PtpAffx.148772.1.S1_at	A	A1TS	POPTR_0018s06620	POPTR_0018s06620 (11)	scaffold_18:6655788-6656302(-) (11)	NA	Q94A82	"Nudix hydrolase 19, chloroplastic"	AT5G20070.1	nudix hydrolase homolog 19 	LOC_Os06g04910.1	"hydrolase, NUDIX family protein, expressed"	Medtr8g119760.1	"Isopentenyl-diphosphate delta-isomerase, type 1; ; "	NA	GO:0016787|hydrolase activity||GO:0046872|metal ion binding	NA
PtpAffx.148807.1.S1_at	A	A1TS	POPTR_0017s02080	POPTR_0017s02080 (10)	scaffold_17:1518341-1519584(+) (10)	NA	P49293	"Phytoene synthase, chloroplastic"	AT5G17230.2	PHYTOENE SYNTHASE 	LOC_Os06g51290.3	"phytoene synthase, chloroplast precursor, putative, expressed"	Medtr5g084540.1	Squalene/phytoene synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.148851.1.S1_at	A	A1TS	POPTR_0004s08450	POPTR_0004s08450 (11)	scaffold_4:6993126-6993399(+) (11)	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os03g12250.1	"atypical receptor-like kinase MARK, putative, expressed"	Medtr5g085840.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.148855.1.S1_s_at	A	A1TS	POPTR_0018s03740	POPTR_0018s03740 (11)	scaffold_18:3189194-3189502(-) (11)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT5G24870.2	RING/U-box superfamily protein 	LOC_Os06g48040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g133350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148856.1.S1_s_at	A	A1TS	POPTR_0018s14640	POPTR_0018s14640 (11)	scaffold_18:14777710-14778874(+) (11)	NA	Q6MAS9	Glycogen synthase	AT4G18240.1	starch synthase 4 	LOC_Os01g52250.4	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
PtpAffx.148858.1.S1_at	A	A1TS	POPTR_0010s13830	POPTR_0010s13830 (11)	scaffold_10:13553194-13553445(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT1G25510.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g04710.1	"aspartic proteinase, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14886.1.S1_at	A	A1TS	POPTR_0008s09280	POPTR_0008s09280 (9)	scaffold_8:5748651-5749086(+) (10)	NA	NA	NA	AT1G13930.2	Involved in response to salt stress.  Knockout mutants are hypersensitive to salt stress. 	LOC_Os03g11220.1	"keratin, type I cytoskeletal 9, putative, expressed"	Medtr4g115570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148862.1.S1_at	A	A1TS	POPTR_0006s13060	POPTR_0006s13060 (11)	scaffold_6:10281426-10283604(+) (11)	NA	O60291	E3 ubiquitin-protein ligase MGRN1	AT3G09770.1	RING/U-box superfamily protein 	LOC_Os03g15000.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148864.1.S1_at	A	A1TS	POPTR_0002s16440	POPTR_0002s16440 (10)	scaffold_2:12301635-12302655(-) (10)	NA	Q49YU2	Diacylglycerol kinase	AT2G46090.1	Diacylglycerol kinase family protein 	LOC_Os03g03400.1	"diacylglycerol kinase, putative, expressed"	Medtr7g088910.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.148868.2.S1_at	A	A1MS	POPTR_0012s07120	POPTR_0012s07120 (9)	scaffold_12:7815226-7815524(-) (9)	NA	Q9UPY8	Microtubule-associated protein RP/EB family member 3	AT3G47690.1	microtubule end binding protein EB1A 	LOC_Os04g54940.1	"ATEB1A-like microtubule associated protein, putative, expressed"	Medtr8g112510.1	Calponin-like actin-binding; EB1 	NA	GO:0008017|microtubule binding	NA
PtpAffx.148889.1.S1_s_at	A	A1TS	POPTR_0009s13510	POPTR_0009s13510 (11)	scaffold_9:10734033-10734739(+) (11)	NA	P28493	Pathogenesis-related protein 5	AT4G38660.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os08g43510.1	"thaumatin, putative, expressed"	Medtr5g022280.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148894.1.S1_at	A	A1TS	POPTR_0005s12450	POPTR_0005s12450 (11)	scaffold_5:9217372-9217820(-) (11)	NA	NA	NA	AT3G01360.2	Family of unknown function (DUF716)  	LOC_Os06g13160.1	"viral-response family protein, expressed"	Medtr2g026770.1	"Proteinase inhibitor I4, serpin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14893.1.S1_at	A	A1TS	POPTR_0001s22450	POPTR_0001s22450 (11)	scaffold_1:21204032-21204529(+) (11)	NA	Q7XJU0	Uncharacterized basic helix-loop-helix protein At1g64625	AT2G27230.2	transcription factor-related 	LOC_Os01g64560.1	"helix-loop-helix DNA-binding protein, putative, expressed"	Medtr2g105070.1	Basic helix-loop-helix dimerisation region bHLH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148931.1.S1_at	A	A1TS	POPTR_0009s10850	POPTR_0009s10850 (11)	scaffold_9:9202152-9204953(-) (11)	NA	Q5F457	WW domain-binding protein 4	AT1G49590.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os06g11170.1	"formin-binding protein-related, putative, expressed"	Medtr4g129230.1	"Zinc finger, C2H2-type matrin "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.148932.1.S1_at	A	A1TS	POPTR_0016s01490	POPTR_0016s01490 (11)	scaffold_16:679409-680530(+) (11)	POPTR_0006s01290 (7)	A7XDQ9	"Probable beta-1,3-galactosyltransferase 20"	AT4G21060.2	Galactosyltransferase family protein 	LOC_Os08g03670.1	"galactosyltransferase family protein, putative, expressed"	Medtr2g022300.1	"Glycosyl transferase, family 31; Arginase/agmatinase/formiminoglutamase; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.148941.1.S1_at	A	A1TS	POPTR_0018s12730	POPTR_0018s12730 (9)	scaffold_18:13242329-13245227(-) (9)	NA	NA	NA	AT5G32440.3	Ubiquitin system component Cue protein 	LOC_Os02g09180.1	"CUE domain containing protein, expressed"	Medtr4g005650.1	Ubiquitin system component Cue; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148947.1.A1_a_at	A	A1TS	POPTR_0001s22420	POPTR_0001s22420 (9)	scaffold_1:21078004-21078155(-) (9)	NA	Q8BJM3	Growth inhibition and differentiation-related protein 88 homolog	AT5G22120.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73470.1	"growth inhibition and differentiation-related protein 88, putative, expressed"	Medtr4g067270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148947.1.A1_at	A	A1TS	POPTR_0001s22420	POPTR_0001s22420 (11)	scaffold_1:21077889-21079689(-) (11)	NA	Q8BJM3	Growth inhibition and differentiation-related protein 88 homolog	AT5G22120.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g73470.1	"growth inhibition and differentiation-related protein 88, putative, expressed"	Medtr4g067270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14895.1.S1_at	A	A1TS	POPTR_0005s07140	POPTR_0005s07140 (11)	scaffold_5:4792919-4794604(-) (11)	NA	Q9MA92	Filament-like plant protein 3	AT3G05270.2	Plant protein of unknown function (DUF869) 	LOC_Os07g32340.3	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g143990.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148953.1.A1_at	A	A1TS	POPTR_0008s20330	POPTR_0008s20330 (9)	scaffold_8:14083081-14083617(-) (9)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT5G18930.1	Adenosylmethionine decarboxylase family protein 	LOC_Os05g04990.1	"adenosylmethionine decarboxylase, putative, expressed"	Medtr8g140130.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.148964.1.A1_s_at	A	A1TS	POPTR_0013s06110	POPTR_0013s06110 (11)	scaffold_13:4532808-4534248(+) (11)	NA	Q09143	High affinity cationic amino acid transporter 1	AT1G58030.1	cationic amino acid transporter 2 	LOC_Os12g42850.1	"amino acid permease, putative, expressed"	Medtr7g103380.1	Amino acid/polyamine transporter I 	GO:0006810|transport	NA	GO:0016020|membrane
PtpAffx.148967.1.A1_at	A	A1TS	POPTR_0009s06140	POPTR_0009s06140 (11)	scaffold_9:6019863-6020286(+) (11)	NA	Q9SV01	F-box/WD-40 repeat-containing protein At3g52030	AT3G52030.2	F-box family protein with WD40/YVTN repeat doamin 	LOC_Os11g07970.1	"OsFBW2 - F-box domain and WD40 repeat containing protein, expressed"	Medtr3g040900.1	Cyclin-like F-box; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.148981.1.A1_at	A	A1MS	POPTR_0013s04620	POPTR_0013s04620 (11)	scaffold_13:3181469-3182015(+) (11)	NA	P72991	ATP-dependent zinc metalloprotease FtsH 3	AT3G04340.1	FtsH extracellular protease family 	LOC_Os06g51029.1	"OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed"	Medtr1g094060.1	Peptidase M41; Caspase Recruitment; AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.148985.1.A1_s_at	A	A1TS	POPTR_0010s16250	POPTR_0010s16250 (11)	scaffold_10:15227915-15229124(-) (11)	NA	NA	NA	AT3G17340.1	ARM repeat superfamily protein 	LOC_Os11g47320.1	"protein transporter, putative, expressed"	Medtr8g134520.1	"protein transporter, related "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.149.1.A1_at	A	A1TS	POPTR_0017s12000	POPTR_0017s12000 (11)	scaffold_17:12148546-12148993(+) (11)	NA	P47082	Vacuolar amino acid transporter 1	AT5G15240.1	Transmembrane amino acid transporter family protein 	LOC_Os04g38680.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr7g010030.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149007.1.A1_at	A	A1TS	POPTR_0016s09320	POPTR_0016s09320 (9)	scaffold_16:7323330-7323449(-) (9)	NA	Q7ZYA2	Transcription initiation factor TFIID subunit 8	AT4G34340.1	TBP-associated factor 8 	LOC_Os12g38620.3	"bromodomain associated family protein, expressed"	Medtr3g109750.1	Histone-fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14906.1.A1_at	A	A1TS	POPTR_0001s21890	POPTR_0001s21890 (11)	scaffold_1:20380721-20381247(-) (11)	NA	Q9C992	3-ketoacyl-CoA synthase 7	AT1G71160.1	3-ketoacyl-CoA synthase 7 	LOC_Os03g12030.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr2g007100.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.149060.1.A1_at	A	A1TS	POPTR_0005s11220	POPTR_0005s11220 (9)	scaffold_5:8143206-8143613(+) (9)	NA	Q5XF11	F-box protein At4g35930	AT4G35930.1	F-box family protein 	LOC_Os10g30280.1	"OsFBX386 - F-box domain containing protein, expressed"	Medtr8g089370.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149071.1.S1_s_at	A	A1TS	POPTR_0001s38580	POPTR_0001s38580 (11)	scaffold_1:37782796-37783367(+) (11)	NA	NA	NA	AT1G73140.1	Plant protein of unknown function (DUF828) 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr5g090760.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149143.1.A1_at	A	A1TS	POPTR_0008s04670	POPTR_0008s04670 (11)	scaffold_8:2674563-2674985(-) (11)	NA	Q9LHJ9	Probable protein phosphatase 2C 38	AT3G12620.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr1g146560.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149167.1.S1_s_at	A	A1TS	POPTR_0002s07880	POPTR_0002s07880 (11)	scaffold_2:5414216-5415177(+) (11)	POPTR_0005s20530 (6)	Q9FR99	1-aminocyclopropane-1-carboxylate oxidase	AT1G77330.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g05680.1	"1-aminocyclopropane-1-carboxylate oxidase, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.149183.1.S1_at	A	A1TS	POPTR_0015s09800	POPTR_0015s09800 (9)	scaffold_15:10917608-10917957(+) (9)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os04g40520.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14923.1.A1_at	A	A1TS	POPTR_0006s20700	POPTR_0006s20700 (11)	scaffold_6:19694408-19694744(+) (11)	NA	Q84JD5	Probable protein phosphatase 2C 68	AT5G06750.3	Protein phosphatase 2C family protein 	LOC_Os04g49490.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149231.1.S1_a_at	A	A1MS	POPTR_0006s13580	POPTR_0006s13580 (11)	scaffold_6:10798034-10798188(-) (11)	NA	Q8H8U5	Protein IN2-1 homolog B	AT5G02790.1	Glutathione S-transferase family protein 	LOC_Os03g17470.1	"IN2-1 protein, putative, expressed"	AC235022_17.1	Thioredoxin fold; Thioredoxin-like fold AC235022.1 105935-107691 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149265.1.S1_s_at	A	A1TS	POPTR_0001s29460	POPTR_0001s29460 (11)	scaffold_1:28128930-28130036(+) (11)	NA	P93732	Proline iminopeptidase	AT2G14260.1	proline iminopeptidase 	LOC_Os05g43830.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr2g010520.1	"Peptidase S33, prolyl aminopeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149278.1.S1_s_at	A	A1TS	POPTR_0010s06270	POPTR_0010s06270 (11)	scaffold_10:7683874-7684647(-) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT1G67720.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g01200.3	"senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed"	Medtr7g120820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.149281.1.S1_at	A	A1TS	POPTR_0002s06820	POPTR_0002s06820 (11)	scaffold_2:4580942-4581656(+) (11)	NA	NA	NA	AT1G21090.1	Cupredoxin superfamily protein 	NA	NA	Medtr1g125000.1	Cupredoxin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149305.1.S1_at	A	A1MS	POPTR_0019s04790	POPTR_0019s04790 (9)	scaffold_19:5010664-5011050(+) (9)	NA	Q8LPN7	E3 ubiquitin-protein ligase RING1-like	AT5G56340.1	RING/U-box superfamily protein 	LOC_Os03g59760.2	"RING finger protein 126, putative, expressed"	Medtr3g105730.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149310.1.S1_at	A	A1TS	POPTR_0004s23540	POPTR_0004s23540 (11)	scaffold_4:22226343-22226605(-) (11)	POPTR_0022s00320 (8)	NA	NA	AT1G09610.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149323.1.S1_at	A	A1TS	POPTR_0012s10080	POPTR_0012s10080 (9)	scaffold_12:10930211-10930787(-) (9)	NA	NA	NA	AT5G14120.1	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149374.1.S1_at	A	A1TS	POPTR_0001s10560	POPTR_0001s10560 (10)	scaffold_1:8217536-8217708(+) (10)	NA	Q42059	Endoglucanase 6	AT1G64390.1	glycosyl hydrolase 9C2 	LOC_Os01g12070.1	"endoglucanase precursor, putative, expressed"	Medtr3g110130.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0030246|carbohydrate binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0005576|extracellular region
PtpAffx.149380.1.S1_at	A	A1TS	POPTR_0011s16690	POPTR_0011s16690 (11)	scaffold_11:18475966-18477339(+) (11)	NA	Q5ZM25	Obg-like ATPase 1	AT1G30580.1	GTP binding 	LOC_Os08g09940.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.149382.1.S1_at	A	A1TS	POPTR_0010s02880	POPTR_0010s02880 (11)	scaffold_10:3366115-3366368(+) (11)	NA	NA	NA	AT5G18920.1	Cox19-like CHCH family protein 	NA	NA	Medtr2g026000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149393.1.S1_at	A	A1TS	POPTR_0006s07550	POPTR_0006s07550 (11)	scaffold_6:5472578-5473641(+) (11)	NA	NA	NA	AT4G29960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51780.1	expressed protein	Medtr2g042660.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149416.1.S1_at	A	A1TS	POPTR_0002s24730	POPTR_0002s24730 (11)	scaffold_2:22015531-22015864(+) (11)	NA	O14270	Fork head transcription factor 1	AT3G07220.1	SMAD/FHA domain-containing protein  	LOC_Os08g41710.1	"FHA domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149451.1.S1_at	A	A1TS	POPTR_0001s04540	POPTR_0001s04540 (10)	scaffold_1:3558884-3559227(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149452.1.S1_at	A	A1TS	POPTR_0005s23510	POPTR_0005s23510 (11)	scaffold_5:22255275-22255801(+) (11)	NA	NA	NA	AT1G03080.1	kinase interacting (KIP1-like) family protein 	LOC_Os10g28610.1	"KIP1, putative, expressed"	Medtr1g083940.1	KIP1-like 	NA	NA	GO:0016020|membrane
PtpAffx.149478.1.S1_s_at	A	A1TS	POPTR_0002s08240	POPTR_0002s08240 (11)	scaffold_2:5720527-5722137(+) (11)	NA	Q42592	"L-ascorbate peroxidase S, chloroplastic/mitochondrial"	AT4G08390.2	stromal ascorbate peroxidase 	LOC_Os12g07820.1	"OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr3g100720.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.149478.2.S1_at	A	A1TS	POPTR_0005s20140	POPTR_0005s20140 (11)	scaffold_5:19187723-19188368(-) (11)	NA	Q42593	"L-ascorbate peroxidase T, chloroplastic"	AT1G77490.1	thylakoidal ascorbate peroxidase 	LOC_Os02g34810.1	"OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr3g100720.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.14948.1.S1_at	A	A1TS	POPTR_0005s26730	POPTR_0005s26730 (11)	scaffold_5:24628415-24629072(+) (11)	NA	Q9C5Y0	Phospholipase D delta	AT4G35790.2	phospholipase D delta 	LOC_Os09g37100.1	"phospholipase D, putative, expressed"	Medtr3g157400.1	C2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.14950.1.S1_at	A	A1TS	POPTR_0002s17870	POPTR_0002s17870 (10)	scaffold_2:13694840-13695201(+) (10)	NA	NA	NA	AT2G46735.1	unknown protein; Has 14 Blast hits to 14 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149510.2.S1_at	A	A1TS	POPTR_0005s03850	POPTR_0005s03850 (9)	scaffold_5:2558250-2558288(-) (9)	NA	O60291	E3 ubiquitin-protein ligase MGRN1	AT3G06140.1	RING/U-box superfamily protein 	LOC_Os03g15000.1	"Zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121420.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149518.1.S1_s_at	A	A1TS	POPTR_0001s14500	POPTR_0001s14500 (11)	scaffold_1:11377568-11378988(-) (11)	NA	NA	NA	AT3G24160.1	putative type 1 membrane protein 	LOC_Os08g45220.1	expressed protein	Medtr2g130050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149519.1.S1_at	A	A1TS	POPTR_0005s10130	POPTR_0005s10130 (11)	scaffold_5:7231753-7232439(-) (11)	NA	B2RS91	RNA polymerase I-specific transcription initiation factor RRN3	AT2G34750.1	RNA polymerase I specific transcription initiation factor RRN3 protein 	LOC_Os06g47350.2	"RNA polymerase I specific transcription initiation factor RRN3 family protein, putative, expressed"	Medtr4g134310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14953.1.S1_at	A	A1TS	POPTR_0006s13810	POPTR_0006s13810 (11)	scaffold_6:11015374-11016403(-) (11)	NA	Q9URW6	SH3 domain-containing protein PJ696.02	AT3G43230.1	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os07g42500.1	"FYVE zinc finger domain containing protein, expressed"	Medtr8g133230.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149533.1.A1_at	A	A1TS	POPTR_0007s14750	POPTR_0007s14750 (9)	scaffold_7:14514969-14515607(+) (9)	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	NA	NA	Medtr5g015260.1	Phytosulfokine 	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.149533.2.S1_s_at	A	A2TS	POPTR_0007s14750	POPTR_0014s00810 (11)//POPTR_0007s14750 (11)	scaffold_14:766222-766269(+) (11)//scaffold_7:14515254-14515301(+) (11)	NA	Q9M2Y0	Phytosulfokines 3	AT3G49780.1	phytosulfokine 4 precursor 	NA	NA	Medtr5g015260.1	Phytosulfokine 	GO:0008283|cell proliferation	GO:0008083|growth factor activity	GO:0005576|extracellular region
PtpAffx.149603.1.A1_at	A	A1TS	POPTR_0016s04480	POPTR_0016s04480 (10)	scaffold_16:2637708-2638216(-) (10)	NA	Q84JD5	Probable protein phosphatase 2C 68	AT5G06750.3	Protein phosphatase 2C family protein 	LOC_Os04g49490.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149608.1.A1_at	A	A1TS	POPTR_0018s06320	POPTR_0018s06320 (10)	scaffold_18:6138511-6140064(+) (10)	NA	Q93YV6	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform	AT5G25510.1	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os05g48150.1	"transposon protein, putative, unclassified, expressed"	Medtr8g118690.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.14961.1.A1_s_at	A	A12TS	POPTR_0002s21040	POPTR_0011s02200 (11)//POPTR_0011s02090 (11)//POPTR_0011s02170 (11)//POPTR_0011s02160 (11)//POPTR_0011s03690 (11)//POPTR_0011s03660 (11)//POPTR_0011s02070 (11)//POPTR_0011s03620 (11)//POPTR_2263s00200 (11)//POPTR_0002s21040 (11)//POPTR_0011s03710 (11)//POPTR_0011s02060 (11)	scaffold_11:1723684-1723792(-) (11)//scaffold_11:1734769-1734865(-) (11)//scaffold_11:1759540-1759648(-) (11)//scaffold_11:1811588-1811696(-) (11)//scaffold_11:1821216-1821324(-) (11)//scaffold_11:1852676-1852784(-) (11)//scaffold_11:3708446-3708554(-) (11)//scaffold_11:3748949-3749057(-) (11)//scaffold_11:3759635-3769510(-) (11)//scaffold_11:3783704-3783812(-) (11)//scaffold_11:3797244-3797352(-) (11)//scaffold_2:17373912-17374020(+) (11)//scaffold_2263:759-867(-) (11)	NA	Q9ZT07	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1	AT1G11340.1	S-locus lectin protein kinase family protein 	LOC_Os03g35600.1	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr4g124460.1	"EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding	NA
PtpAffx.14963.1.A1_at	A	A1TS	POPTR_0004s01770	POPTR_0004s01770 (11)	scaffold_4:1075219-1075395(+) (11)	NA	NA	NA	AT4G21790.1	tobamovirus multiplication 1 	LOC_Os03g36790.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149641.1.A1_at	A	A1TS	POPTR_0001s44720	POPTR_0001s44720 (11)	scaffold_1:45148423-45149691(-) (11)	NA	Q59156	DNA polymerase I	AT1G50840.1	polymerase gamma 2 	LOC_Os08g07840.1	"PolI-like DNA polymerase, putative, expressed"	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.149662.1.A1_at	A	A1TS	POPTR_0016s14660	POPTR_0016s14660 (11)	scaffold_16:13824714-13825572(+) (11)	NA	Q9SWE7	V-type proton ATPase subunit E	AT4G11150.1	vacuolar ATP synthase subunit E1 	LOC_Os01g46980.1	"vacuolar ATP synthase subunit E, putative, expressed"	Medtr5g009830.1	"H+-transporting two-sector ATPase, E subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
PtpAffx.149678.1.A1_at	A	A1TS	POPTR_0001s31800	POPTR_0001s31800 (11)	scaffold_1:30166810-30167392(-) (11)	NA	P47924	"Riboflavin biosynthesis protein ribBA, chloroplastic"	AT5G64300.1	GTP cyclohydrolase II 	LOC_Os02g36340.1	"riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed"	Medtr4g120840.1	"3,4-Dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II "	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0008686|""3,4-dihydroxy-2-butanone-4-phosphate synthase activity""||GO:0003935|GTP cyclohydrolase II activity"	NA
PtpAffx.149708.1.A1_at	A	A1TS	POPTR_0005s15600	POPTR_0005s15600 (11)	scaffold_5:12228334-12229235(+) (11)	NA	NA	NA	AT5G38380.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). "	LOC_Os07g18250.2	expressed protein	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.149742.1.A1_at	A	A1TS	POPTR_0002s21790	POPTR_0002s21790 (11)	scaffold_2:18397339-18397886(+) (11)	NA	Q94AD9	Zinc finger CCCH domain-containing protein 3	AT1G04990.1	Zinc finger C-x8-C-x5-C-x3-H type family protein 	LOC_Os11g28270.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr5g092550.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.149749.1.A1_at	A	A1TS	POPTR_0015s13700	POPTR_0015s13700 (11)	scaffold_15:13538277-13538834(+) (11)	NA	NA	NA	AT5G05800.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 881 Blast hits to 512 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 38; Plants - 833; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os12g10550.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr3g093090.1	"PIF-like orf1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14975.1.S1_at	A	A1TS	POPTR_0015s01520	POPTR_0015s01520 (9)	scaffold_15:953206-953623(+) (9)	NA	Q92QQ2	ATP-dependent Clp protease ATP-binding subunit ClpX	AT5G53350.1	CLP protease regulatory subunit X 	LOC_Os02g35630.1	"AAA family ATPase, putative, expressed"	Medtr3g123850.1	"ClpX, ATPase regulatory subunit "	NA	GO:0005524|ATP binding	NA
PtpAffx.149756.1.A1_at	A	A1MS	POPTR_0010s14080	POPTR_0010s14080 (9)	scaffold_10:13782538-13783316(-) (10)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT3G25690.2	Hydroxyproline-rich glycoprotein family protein 	LOC_Os12g01449.1	"chloroplast unusual positioning protein, putative, expressed"	Medtr5g069490.1	"chloroplast unusual positioning 1B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149777.1.A1_a_at	A	A1TS	POPTR_0005s10490	POPTR_0005s10490 (11)	scaffold_5:7534009-7534735(-) (11)	NA	Q9UHC1	DNA mismatch repair protein Mlh3	AT4G35520.1	MUTL protein homolog 3 	LOC_Os09g37930.1	expressed protein	Medtr5g024260.1	DNA mismatch repair protein 	NA	GO:0005524|ATP binding	NA
PtpAffx.149804.1.A1_at	A	A1TS	POPTR_0018s00870	POPTR_0018s00870 (11)	scaffold_18:818146-819237(+) (11)	NA	NA	NA	AT5G11470.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g42460.1	"BAH domain containing protein, expressed"	Medtr3g132700.1	Bromo adjacent region 	NA	GO:0003677|DNA binding	NA
PtpAffx.149804.2.S1_a_at	A	A2TS	POPTR_0006s26040	POPTR_0018s00870 (11)//POPTR_0006s26040 (11)	scaffold_18:817671-818128(+) (11)//scaffold_6:24356769-24357221(+) (11)	NA	NA	NA	AT5G11470.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g42460.1	"BAH domain containing protein, expressed"	Medtr3g132700.1	Bromo adjacent region 	NA	GO:0003677|DNA binding	NA
PtpAffx.149830.1.S1_at	A	A1TS	POPTR_0009s01620	POPTR_0009s01620 (11)	scaffold_9:2155105-2157337(+) (11)	NA	NA	NA	AT2G28310.3	Protein of unknown function (DUF707) 	LOC_Os05g01760.1	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149856.1.S1_s_at	A	A1TS	POPTR_0015s07550	POPTR_0015s07550 (11)	scaffold_15:8835144-8836526(+) (11)	NA	Q40255	Probable aldehyde dehydrogenase	AT5G62530.1	aldehyde dehydrogenase 12A1 	LOC_Os05g45960.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g112760.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149869.1.S1_at	A	A1TS	POPTR_0003s09590	POPTR_0003s09590 (11)	scaffold_3:10887420-10888532(-) (11)	NA	Q38908	Probable xyloglucan endotransglucosylase/hydrolase protein 30	AT1G32170.1	xyloglucan endotransglucosylase/hydrolase 30 	LOC_Os02g03550.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr5g029020.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
PtpAffx.149870.1.S1_s_at	A	A1TS	POPTR_0012s11900	POPTR_0012s11900 (11)	scaffold_12:12255002-12255069(-) (11)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.149893.1.S1_s_at	A	A1TS	POPTR_0011s14640	POPTR_0011s14640 (11)	scaffold_11:16977381-16977787(-) (11)	NA	NA	NA	AT5G45030.2	Trypsin family protein 	LOC_Os04g52479.3	"peptidase, trypsin-like serine and cysteine proteases, putative, expressed"	Medtr4g114550.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1499.1.S1_at	A	A1TS	POPTR_0004s21260	POPTR_0004s21260 (11)	scaffold_4:20462474-20462859(-) (11)	NA	Q9ZQG8	"Ferredoxin-3, chloroplastic"	AT2G27510.1	ferredoxin 3 	LOC_Os03g61960.2	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr2g107770.1	"Ferredoxin [2Fe-2S], plant "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.149909.1.S1_at	A	A1TS	POPTR_0014s04320	POPTR_0014s04320 (11)	scaffold_14:3372921-3374136(-) (11)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.149909.1.S1_s_at	A	A2TS	POPTR_0002s13630	POPTR_0002s13630 (11)//POPTR_0014s04320 (11)	scaffold_14:3371373-3374531(-) (11)//scaffold_2:10101460-10104739(-) (11)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.149919.1.S1_at	A	A1TS	POPTR_0001s17290	POPTR_0001s17290 (11)	scaffold_1:14118101-14120414(-) (11)	NA	Q4VA72	Lys-63-specific deubiquitinase BRCC36	AT1G80210.1	Mov34/MPN/PAD-1 family protein 	LOC_Os05g46490.2	"mov34 family protein, putative, expressed"	Medtr2g125820.1	Mov34/MPN/PAD-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149927.1.S1_at	A	A1TS	POPTR_0014s12870	POPTR_0014s12870 (11)	scaffold_14:9482093-9482637(+) (11)	NA	Q9LYC6	Glutaredoxin-C11	AT3G62950.1	Thioredoxin superfamily protein 	LOC_Os01g27140.1	"OsGrx_C7 - glutaredoxin subgroup III, expressed"	Medtr7g129930.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.149928.1.S1_at	A	A1TS	POPTR_0003s12690	POPTR_0003s12690 (11)	scaffold_3:13203483-13203618(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g149480.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.149929.1.S1_at	A	A1MS	POPTR_0010s16560	POPTR_0010s16560 (10)	scaffold_10:15489076-15489229(-) (10)	NA	NA	NA	AT2G03630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os07g20270.1	expressed protein	Medtr5g048120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149929.1.S1_s_at	A	A1TS	POPTR_0010s16560	POPTR_0010s16560 (11)	scaffold_10:15489219-15489569(-) (11)	NA	NA	NA	AT2G03630.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 126 Blast hits to 126 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 5; Plants - 87; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). 	LOC_Os07g20270.1	expressed protein	Medtr5g048120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.14998.3.S1_s_at	A	A1TS	POPTR_0004s18050	POPTR_0004s18050 (11)	scaffold_4:18052666-18053344(-) (11)	NA	Q5M7N9	Extended synaptotagmin-3	AT2G20990.1	synaptotagmin A 	LOC_Os02g25060.1	"NTMC2Type1.2 protein, putative, expressed"	Medtr4g098660.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.149983.1.S1_at	A	A1TS	POPTR_0006s11490	POPTR_0006s11490 (11)	scaffold_6:8694806-8695768(-) (11)	NA	Q8Y7C5	Bifunctional protein folD	AT2G38660.3	Amino acid dehydrogenase family protein 	LOC_Os09g15810.1	"bifunctional protein folD, putative, expressed"	Medtr1g037310.1	Tetrahydrofolate dehydrogenase/cyclohydrolase 	GO:0044281|small molecule metabolic process||GO:0009396|folic acid and derivative biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.149986.1.S1_at	A	A1MS	POPTR_0003s17910	POPTR_0003s17910 (11)	scaffold_3:17156442-17156880(-) (11)	NA	Q9SAI5	60S ribosomal protein L7-1	AT1G80750.1	Ribosomal protein L30/L7 family protein 	LOC_Os08g42920.1	"60S ribosomal protein L7, putative, expressed"	Medtr7g065310.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.149990.1.S1_s_at	A	A1TS	POPTR_0012s05930	POPTR_0012s05930 (11)	scaffold_12:5831157-5832045(-) (11)	NA	Q7M3S9	RING finger protein B	AT1G18610.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150004.1.S1_s_at	A	A1TS	POPTR_0019s10900	POPTR_0019s10900 (11)	scaffold_19:12381199-12381613(+) (11)	NA	Q9C8P8	Transcription factor bHLH80	AT1G35460.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os08g39630.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr1g147140.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15002.2.S1_at	A	A2TS	POPTR_0001s01770	POPTR_0001s01770 (11)//POPTR_0003s09690 (10)	scaffold_1:1290007-1290396(-) (11)//scaffold_3:10964739-10965124(+) (10)	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr5g028110.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.150025.1.S1_s_at	A	A1TS	POPTR_0013s15380	POPTR_0013s15380 (11)	scaffold_13:15381482-15381530(-) (11)	NA	Q43054	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.150046.1.S1_at	A	A1TS	POPTR_0005s07930	POPTR_0005s07930 (11)	scaffold_5:5475234-5476886(+) (11)	NA	O65201	"Acyl-coenzyme A oxidase 2, peroxisomal"	AT5G65110.1	acyl-CoA oxidase 2 	LOC_Os11g39220.1	"acyl-coenzyme A oxidase, putative, expressed"	Medtr4g109110.1	"Carbohydrate kinase, PfkB; Acyl-CoA dehydrogenase C-terminal-like; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.15005.1.S1_at	A	A1TS	POPTR_0003s09020	POPTR_0003s09020 (11)	scaffold_3:10346976-10347413(-) (11)	NA	NA	NA	AT2G35290.1	unknown protein; Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g07400.1	expressed protein	Medtr5g014550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150052.1.S1_s_at	A	A1TS	POPTR_0015s11475	POPTR_0015s11475 (11)	scaffold_15:12060338-12060538(+) (11)	NA	B9IFI5	UPF0497 membrane protein 1	AT4G25040.1	Uncharacterised protein family (UPF0497) 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150066.1.S1_s_at	A	A2TS	POPTR_0015s01860	POPTR_0015s01860 (9)//POPTR_0492s00210 (9)	scaffold_15:1250965-1261850(-) (11)//scaffold_15:1302609-1311961(-) (10)//scaffold_492:9120-10071(-) (11)	NA	NA	NA	AT5G53450.2	OBP3-responsive gene 1 	LOC_Os01g46720.1	expressed protein	Medtr3g124180.2	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150069.1.S1_at	A	A1MS	POPTR_0013s00570	POPTR_0013s00570 (11)	scaffold_13:271465-271818(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150070.1.S1_at	A	A1TS	POPTR_0012s05520	POPTR_0012s05520 (10)	scaffold_12:5173233-5173597(-) (10)	NA	Q41651	"Peptidyl-prolyl cis-trans isomerase, chloroplastic"	AT1G74070.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g02080.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr8g116500.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.150078.1.S1_at	A	A1MS	POPTR_0005s01370	POPTR_0005s01370 (10)	scaffold_5:914778-915619(-) (11)	NA	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.150078.1.S1_s_at	A	A2TS	POPTR_0005s01370	POPTR_0013s00760 (11)//POPTR_0005s01370 (11)	scaffold_13:392146-392662(-) (11)//scaffold_5:914954-915431(-) (11)	NA	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.15008.1.S1_at	A	A1TS	POPTR_0018s13890	POPTR_0018s13890 (11)	scaffold_18:14185234-14185605(+) (11)	NA	Q9LU68	Protein CHLOROPLAST IMPORT APPARATUS 2	AT5G57180.2	chloroplast import apparatus 2 	LOC_Os02g05470.1	"CCT motif family protein, expressed"	Medtr8g129690.1	CCT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1501.2.S1_at	A	A2TS	POPTR_0014s02160	POPTR_0014s02160 (10)//POPTR_0014s02180 (9)	scaffold_14:1856615-1857111(+) (10)//scaffold_14:1869471-1869945(+) (9)	NA	P93147	Isoflavone 2'-hydroxylase	AT5G10600.1	"cytochrome P450, family 81, subfamily K, polypeptide 2 "	LOC_Os03g55240.1	"cytochrome P450, putative, expressed"	Medtr5g016380.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.150102.1.S1_at	A	A1MS	POPTR_0001s29650	POPTR_0001s29650 (10)	scaffold_1:28302311-28302815(+) (10)	NA	Q43117	"Pyruvate kinase isozyme A, chloroplastic"	AT3G22960.1	Pyruvate kinase family protein 	LOC_Os03g46910.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.150105.1.S1_at	A	A1TS	POPTR_0002s10960	POPTR_0002s10960 (11)	scaffold_2:7995658-7995985(-) (11)	NA	NA	NA	AT2G22660.2	Protein of unknown function (duplicated DUF1399) 	LOC_Os11g40590.3	"DUF1399 containing protein, putative, expressed"	Medtr5g032360.1	Protein of unknown function DUF1399 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150129.1.S1_at	A	A1TS	POPTR_0003s06770	POPTR_0003s06770 (11)	scaffold_3:8297600-8304294(+) (11)	NA	P05050	Alpha-ketoglutarate-dependent dioxygenase AlkB	AT3G14160.1	2-oxoglutarate-dependent dioxygenase family protein 	LOC_Os03g60190.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr4g031500.1	"Alpha-ketoglutarate-dependent dioxygenase alkB, related "	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.150129.1.S1_s_at	A	A2TS	POPTR_0003s06760	POPTR_0003s06770 (11)//POPTR_0003s06760 (11)	scaffold_3:8297617-8298552(+) (11)//scaffold_3:8298288-8304570(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150132.1.S1_at	A	A1MS	POPTR_0003s11000	POPTR_0003s11000 (10)	scaffold_3:11845578-11846792(-) (10)	NA	Q9DBN9	Probable ATP-dependent RNA helicase DDX59	AT3G02065.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g10770.2	"DEAD-box ATP-dependent RNA helicase 41, putative, expressed"	Medtr8g105900.1	"Zinc finger, CCHC-type; Zinc finger, HIT-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150150.1.S1_s_at	A	A1TS	POPTR_0006s26530	POPTR_0006s26530 (11)	scaffold_6:24726088-24726592(+) (11)	NA	O48780	3-ketoacyl-CoA synthase 11	AT2G26640.1	3-ketoacyl-CoA synthase 11 	LOC_Os05g49900.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr8g119040.1	"Ribosomal protein S10; Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.15017.2.A1_a_at	A	A1TS	POPTR_0007s01670	POPTR_0007s01670 (11)	scaffold_7:964162-964376(+) (11)	NA	Q9LTR2	"Protein TRIGALACTOSYLDIACYLGLYCEROL 2, chloroplastic"	AT3G20320.1	trigalactosyldiacylglycerol2 	LOC_Os01g74280.1	"TGD2, putative, expressed"	Medtr5g095460.1	Mammalian cell entry related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150184.1.S1_s_at	A	A1TS	POPTR_0002s20780	POPTR_0002s20780 (11)	scaffold_2:16879602-16880395(-) (11)	NA	NA	NA	AT1G02910.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os01g25600.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g130350.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150191.1.S1_at	A	A1TS	POPTR_0001s30490	POPTR_0001s30490 (11)	scaffold_1:28978857-28979989(+) (11)	NA	Q92466	DNA damage-binding protein 2	AT4G34280.1	transducin family protein / WD-40 repeat family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150195.1.S1_at	A	A1TS	POPTR_0013s04420	POPTR_0013s04420 (11)	scaffold_13:3029656-3031061(-) (11)	NA	A3KPW7	Protein prenyltransferase alpha subunit repeat-containing protein 1	AT1G10095.1	Protein prenylyltransferase superfamily protein 	LOC_Os01g49060.1	"prenyltransferase, putative, expressed"	NA	NA	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity	NA
PtpAffx.150195.1.S1_s_at	A	A1TS	POPTR_0013s04420	POPTR_0013s04420 (11)	scaffold_13:3028983-3029651(-) (11)	NA	A3KPW7	Protein prenyltransferase alpha subunit repeat-containing protein 1	AT1G10095.1	Protein prenylyltransferase superfamily protein 	LOC_Os01g49060.1	"prenyltransferase, putative, expressed"	NA	NA	GO:0018346|protein amino acid prenylation	GO:0008318|protein prenyltransferase activity	NA
PtpAffx.150197.1.S1_at	A	A1TS	POPTR_0008s08240	POPTR_0008s08240 (10)	scaffold_8:5126563-5128588(-) (10)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT1G79480.2	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os09g38784.1	"retrotransposon protein, putative, unclassified"	Medtr1g147220.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150204.1.S1_at	A	A1TS	POPTR_0001s09380	POPTR_0001s09380 (11)	scaffold_1:7158946-7159211(+) (11)	NA	NA	NA	AT4G11560.1	bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os01g34330.1	"BAH domain containing protein, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding	NA
PtpAffx.150219.1.S1_at	A	A1MS	POPTR_0010s22210	POPTR_0010s22210 (11)	scaffold_10:19193134-19193492(+) (11)	NA	Q6ZT07	TBC1 domain family member 9	AT3G55020.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g61860.1	"TBC domain containing protein, expressed"	Medtr1g146610.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.150221.1.S1_at	A	A1TS	POPTR_0015s01450	POPTR_0015s01450 (11)	scaffold_15:886498-887921(+) (11)	NA	Q8LDQ4	PP2A regulatory subunit TAP46	AT5G53000.1	2A phosphatase associated protein of 46 kD 	LOC_Os12g04290.1	"PP2A regulatory subunit TAP46, putative, expressed"	Medtr3g123750.1	TAP42-like protein 	GO:0009607|response to biotic stimulus||GO:0009966|regulation of signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling||GO:0023051|regulation of signaling process	NA	NA
PtpAffx.150232.1.S1_at	A	A1TS	POPTR_0012s13580	POPTR_0012s13580 (11)	scaffold_12:13682530-13682979(-) (11)	NA	Q9FXW4	Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.150235.1.S1_at	A	A1TS	POPTR_0013s13750	POPTR_0013s13750 (10)	scaffold_13:14158880-14159598(+) (10)//scaffold_13:14161493-14162211(+) (10)	POPTR_0013s13760 (7)	NA	NA	AT1G03650.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os10g35680.1	"acetyltransferase, GNAT family, putative, expressed"	AC229695_11.1	GCN5-related N-acetyltransferase AC229695.5 48321-47217 E EGN_Mt090430 200	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.150240.1.S1_at	A	A1TS	POPTR_0017s02000	POPTR_0017s02000 (9)	scaffold_17:1458595-1458953(+) (10)	NA	Q9FFI2	Autophagy protein 5	AT5G17290.1	autophagy protein Apg5 family 	LOC_Os02g02570.1	"autophagy protein 5, putative, expressed"	Medtr5g084820.1	Autophagy protein Apg5 	GO:0006914|autophagy	NA	GO:0005737|cytoplasm
PtpAffx.150244.1.S1_at	A	A1TS	POPTR_0006s05970	POPTR_0006s05970 (11)	scaffold_6:4221157-4221514(+) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	NA	NA	Medtr8g122360.1	"CTV.15, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150249.1.S1_s_at	A	A1TS	POPTR_0001s33470	POPTR_0001s33470 (11)	scaffold_1:31675818-31676278(-) (11)	NA	Q9LSD5	Transcription factor TCP20	AT3G27010.1	"TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 "	LOC_Os01g69980.1	"TCP family transcription factor, putative, expressed"	Medtr7g018180.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150303.1.S1_at	A	A1TS	POPTR_0018s08770	POPTR_0018s08770 (11)	scaffold_18:9693453-9693489(-) (11)	NA	O22025	Protein cfxQ homolog	AT3G24530.1	AAA-type ATPase family protein / ankyrin repeat family protein 	LOC_Os02g16660.1	"cbxX, chromosomal, putative, expressed"	Medtr5g026960.1	Ankyrin 	NA	GO:0005524|ATP binding	NA
PtpAffx.150303.2.S1_s_at	A	A2TS	POPTR_0006s16110	POPTR_0006s16110 (11)//POPTR_0130s00210 (10)	scaffold_130:23444-24014(-) (10)//scaffold_6:13988966-13989568(+) (11)	NA	O22025	Protein cfxQ homolog	AT3G24530.1	AAA-type ATPase family protein / ankyrin repeat family protein 	LOC_Os02g16660.1	"cbxX, chromosomal, putative, expressed"	Medtr5g026960.1	Ankyrin 	NA	GO:0005524|ATP binding	NA
PtpAffx.150314.1.S1_at	A	A1TS	POPTR_0014s12680	POPTR_0014s12680 (11)	scaffold_14:9324008-9324411(-) (11)	NA	Q640T2	WD repeat domain phosphoinositide-interacting protein 3	AT3G62770.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g70780.1	"WD40-like domain containing protein, putative, expressed"	Medtr1g099740.1	"WD repeat domain phosphoinositide-interacting protein 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150333.1.S1_s_at	A	A1TS	POPTR_0019s04750	POPTR_0019s04750 (11)	scaffold_19:4955672-4956297(+) (11)	NA	O64654	"Thioredoxin-like 1-1, chloroplastic"	AT1G08570.1	atypical CYS  HIS rich thioredoxin 4 	LOC_Os03g21000.1	"thioredoxin, putative, expressed"	Medtr7g100190.1	Thioredoxin-like fold; 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.150352.1.S1_s_at	A	A1TS	POPTR_0009s15770	POPTR_0009s15770 (11)	scaffold_9:12121228-12121743(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT5G06570.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g06880.1	"gibberellin receptor GID1L2, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.150364.1.S1_at	A	A1TS	POPTR_0005s27110	POPTR_0005s27110 (11)	scaffold_5:24908433-24909008(-) (11)	NA	NA	NA	AT1G42430.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55760.3); Has 186 Blast hits to 143 proteins in 47 species: Archae - 0; Bacteria - 23; Metazoa - 14; Fungi - 6; Plants - 87; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). 	LOC_Os03g04100.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150384.1.S1_s_at	A	A1TS	POPTR_0006s27840	POPTR_0006s27840 (11)	scaffold_6:25696084-25696334(-) (11)	NA	Q9SKZ2	Probable CCR4-associated factor 1 homolog 7	AT2G32070.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
PtpAffx.150396.1.S1_at	A	A1TS	POPTR_0006s24600	POPTR_0006s24600 (9)	scaffold_6:23199499-23202783(+) (10)	NA	Q9H0R3	Transmembrane protein 222	AT2G26070.1	Protein of unknown function (DUF778) 	LOC_Os01g51430.1	"green ripe-like, putative, expressed"	Medtr1g020540.1	Protein of unknown function DUF778 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150404.1.S1_s_at	A	A1TS	POPTR_0009s01060	POPTR_0009s01060 (11)	scaffold_9:1196582-1197254(+) (11)	NA	Q8ND04	Protein SMG8	NA	NA	LOC_Os02g57780.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150427.1.S1_at	A	A1TS	POPTR_0005s21660	POPTR_0005s21660 (11)	scaffold_5:20764581-20766868(+) (11)	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.2	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.150430.1.S1_at	A	A1TS	POPTR_0001s38290	POPTR_0001s38290 (9)	scaffold_1:37387827-37388094(+) (9)	NA	NA	NA	NA	NA	LOC_Os10g35920.1	"OsFBX389 - F-box domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150447.1.S1_s_at	A	A1TS	POPTR_0006s08020	POPTR_0006s08020 (11)	scaffold_6:5854372-5855129(-) (11)	NA	O64629	Serine/threonine-protein kinase Aurora-3	AT2G45490.1	ataurora3 	LOC_Os03g55620.3	"CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g043740.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.150458.1.S1_at	A	A1TS	POPTR_0019s04210	POPTR_0019s04210 (10)	scaffold_19:4304181-4304652(+) (10)	POPTR_0013s04800 (8)	Q5S2C3	Protein PIR	AT5G18410.2	transcription activators 	LOC_Os03g05020.1	"PIR, putative, expressed"	Medtr7g143220.1	Cytoplasmic fragile X mental retardation protein interacting protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15046.1.S1_a_at	A	A2TS	POPTR_0004s05710	POPTR_0011s07210 (11)//POPTR_0004s05710 (11)	scaffold_11:7970408-7971156(-) (11)//scaffold_4:4477307-4478153(+) (11)	NA	NA	NA	AT1G73177.1	bonsai 	NA	NA	Medtr7g134480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15046.2.A1_at	A	A1TS	POPTR_0011s07210	POPTR_0011s07210 (11)	scaffold_11:7970204-7971534(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr7g134480.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150471.1.S1_s_at	A	A1TS	POPTR_0014s18430	POPTR_0014s18430 (11)	scaffold_14:15597862-15599929(-) (11)	NA	O82662	"Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial"	AT2G20420.1	ATP citrate lyase (ACL) family protein 	LOC_Os02g40830.1	"succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.150473.1.S1_s_at	A	A1TS	POPTR_0001s40830	POPTR_0001s40830 (11)	scaffold_1:40437444-40438907(+) (11)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT5G53900.2	Serine/threonine-protein kinase WNK (With No Lysine)-related 	LOC_Os11g25920.1	"transcription factor-related, putative, expressed"	Medtr1g023870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150479.1.S1_at	A	A1TS	POPTR_0013s13390	POPTR_0013s13390 (10)	scaffold_13:13875894-13876304(+) (10)	NA	NA	NA	AT4G03600.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os12g19860.1	expressed protein	Medtr4g107970.1	"ATP binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150480.1.S1_s_at	A	A1TS	POPTR_0015s05440	POPTR_0015s05440 (11)	scaffold_15:5792260-5792786(+) (11)	NA	NA	NA	AT1G53345.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in 75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37 (source: NCBI BLink). "	LOC_Os02g45950.1	expressed protein	Medtr4g121710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150481.1.S1_at	A	A1MS	POPTR_0014s18620	POPTR_0014s18620 (10)	scaffold_14:15954422-15955897(+) (11)	NA	A2AH22	Activating molecule in BECN1-regulated autophagy protein 1	AT1G04140.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g18820.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g117620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150481.2.A1_at	A	A1TS	POPTR_0002s25600	POPTR_0002s25600 (10)	scaffold_2:22693094-22694351(+) (10)	NA	Q9C0C7	Activating molecule in BECN1-regulated autophagy protein 1	AT1G04140.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g18820.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g117620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1505.1.S1_at	A	A1TS	POPTR_0014s02450	POPTR_0014s02450 (11)	scaffold_14:2052171-2052568(+) (11)	NA	NA	NA	AT5G47830.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g06390.1	expressed protein	Medtr1g023970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150530.1.S1_at	A	A1TS	POPTR_0002s16210	POPTR_0002s16210 (11)	scaffold_2:12113315-12113678(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.1	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150535.1.S1_at	A	A1TS	POPTR_0009s05800	POPTR_0009s05800 (11)	scaffold_9:5801383-5802273(-) (11)	NA	Q05AL1	Armadillo repeat-containing protein 8	AT1G51350.1	ARM repeat superfamily protein 	LOC_Os11g41990.1	"armadillo/beta-catenin-like repeat family protein, expressed"	Medtr5g104530.1	Armadillo 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150547.1.S1_at	A	A1TS	POPTR_0004s09700	POPTR_0004s09700 (9)	scaffold_4:8219711-8220679(-) (9)	NA	Q56ZZ7	Plastidic glucose transporter 4	AT5G16150.3	plastidic GLC translocator 	LOC_Os01g04190.2	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.150556.1.S1_at	A	A1TS	POPTR_0018s13050	POPTR_0018s13050 (10)	scaffold_18:13511644-13512518(+) (10)	NA	Q9LDI3	CBL-interacting serine/threonine-protein kinase 24	AT5G35410.1	Protein kinase superfamily protein 	LOC_Os06g40370.1	"CAMK_KIN1/SNF1/Nim1_like.27 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g120590.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.150562.1.S1_at	A	A1TS	POPTR_0008s10180	POPTR_0008s10180 (11)	scaffold_8:6381497-6383162(+) (11)	NA	Q1ZXH4	Transmembrane protein 93 homolog	AT5G49540.1	Rab5-interacting family protein 	LOC_Os01g49026.1	"transmembrane protein 93, putative, expressed"	Medtr2g037740.1	Protein of unknown function DUF786 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150574.1.S1_at	A	A1TS	POPTR_0010s02530	POPTR_0010s02530 (10)	scaffold_10:2965867-2966240(+) (10)	NA	NA	NA	AT5G24860.1	flowering promoting factor 1 	LOC_Os02g26210.1	"flowering promoting factor-like 1, putative, expressed"	Medtr8g138840.1	"flowering promoting factor-like 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150579.1.S1_s_at	A	A1TS	POPTR_0002s24220	POPTR_0002s24220 (11)	scaffold_2:21633155-21634549(-) (11)	NA	Q54KS4	Guanine nucleotide-binding protein-like 3 homolog	AT3G07050.1	GTP-binding family protein 	LOC_Os01g27730.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.150588.1.S1_at	A	A1TS	POPTR_0011s14710	POPTR_0011s14710 (11)	scaffold_11:17017274-17017521(+) (11)	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150589.1.S1_at	A	A1TS	POPTR_0007s14120	POPTR_0007s14120 (10)	scaffold_7:14011182-14011868(+) (10)	NA	Q66JG8	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.150614.1.S1_at	A	A1TS	POPTR_0001s06900	POPTR_0001s06900 (10)	scaffold_1:5266498-5268571(+) (10)	NA	Q96FV9	THO complex subunit 1	AT5G09860.1	nuclear matrix protein-related 	LOC_Os03g01970.1	"THO complex subunit 1, putative, expressed"	Medtr3g005340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15062.1.S1_at	A	A1MS	POPTR_0001s18040	POPTR_0001s18040 (9)	scaffold_1:15021784-15021966(-) (9)	NA	Q94738	97 kDa heat shock protein	AT1G79920.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os01g08560.2	"DnaK family protein, putative, expressed"	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150645.1.S1_at	A	A1TS	POPTR_0005s12080	POPTR_0005s12080 (11)	scaffold_5:8870175-8872173(+) (11)	NA	NA	NA	AT1G75420.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g15780.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC234703_20.1	"Glycosyl transferase, group 1 AC234703.1 120310-125572 E EGN_Mt090430 200"	GO:0009058|biosynthetic process	NA	NA
PtpAffx.150651.1.S1_at	A	A1TS	POPTR_0014s15940	POPTR_0014s15940 (11)	scaffold_14:12012388-12013766(+) (11)	NA	O74462	Transcription initiation factor TFIID subunit 6	AT1G04950.3	TATA BOX ASSOCIATED FACTOR II 59 	LOC_Os01g32750.1	"TATA binding protein-associated factor, putative, expressed"	Medtr7g026010.1	Histone-fold/TFIID-TAF/NF-Y 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006461|protein complex assembly||GO:0051090|regulation of transcription factor activity||GO:0006352|transcription initiation	GO:0003702|RNA polymerase II transcription factor activity||GO:0016986|transcription initiation factor activity	GO:0005634|nucleus
PtpAffx.150652.1.S1_at	A	A1TS	POPTR_0007s10870	POPTR_0007s10870 (11)	scaffold_7:11055305-11056372(+) (11)	NA	Q55G10	Nicotinate phosphoribosyltransferase	AT2G23420.1	nicotinate phosphoribosyltransferase 2 	LOC_Os03g62110.2	"nicotinate phosphoribosyltransferase family domain containing protein, expressed"	Medtr5g016960.1	Nicotinate phosphoribosyltransferase related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15066.1.S1_at	A	A1TS	POPTR_0005s18180	POPTR_0005s18180 (9)	scaffold_5:16287083-16287117(-) (9)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT4G36960.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g71770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g017210.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.15066.1.S1_s_at	A	A1TS	POPTR_0005s18180	POPTR_0005s18180 (11)	scaffold_5:16287236-16287620(-) (11)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT4G36960.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g71770.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g017210.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.150696.1.S1_at	A	A1TS	POPTR_0018s02560	POPTR_0018s02560 (11)	scaffold_18:2329749-2329943(-) (11)	NA	Q54QK7	Probable dimethyladenosine transferase	AT5G66360.2	Ribosomal RNA adenine dimethylase family protein 	LOC_Os07g32550.1	"dimethyladenosine transferase, putative, expressed"	Medtr5g021120.1	Ribosomal RNA adenine methylase transferase 	GO:0044260|cellular macromolecule metabolic process||GO:0000154|rRNA modification	"GO:0000179|""rRNA (adenine-N6,N6-)-dimethyltransferase activity"""	NA
PtpAffx.1507.1.S1_s_at	A	A1TS	POPTR_0014s04690	POPTR_0014s04690 (9)	scaffold_14:3599937-3601092(+) (11)	NA	NA	NA	AT1G02120.1	GRAM domain family protein 	LOC_Os07g30940.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150730.1.S1_at	A	A1MS	POPTR_0016s10900	POPTR_0016s10900 (9)	scaffold_16:9273518-9274542(+) (11)	POPTR_0006s12180 (6)	NA	NA	AT2G36720.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 	LOC_Os06g01170.1	"PHD-finger domain containing protein, expressed"	Medtr7g124380.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150734.1.A1_a_at	A	A1TA	POPTR_0014s08230	POPTR_0014s08230 (11)	scaffold_14:6116784-6116823(-) (11)//scaffold_14:6116829-6116868(-) (11)//scaffold_14:6116874-6116913(-) (11)	NA	Q6EVK6	ATP-dependent helicase BRM	AT2G46020.2	"transcription regulatory protein SNF2, putative "	LOC_Os02g02290.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g087810.1	"SNF2-related; Bromodomain; Helicase, C-terminal; ; "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0005634|nucleus
PtpAffx.150734.1.A1_at	A	A1TA	POPTR_0014s08230	POPTR_0014s08230 (10)	scaffold_14:6116800-6117107(-) (11)	NA	Q6EVK6	ATP-dependent helicase BRM	AT2G46020.2	"transcription regulatory protein SNF2, putative "	LOC_Os02g02290.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g087810.1	"SNF2-related; Bromodomain; Helicase, C-terminal; ; "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0005634|nucleus
PtpAffx.150742.1.S1_s_at	A	A1TS	POPTR_0018s07590	POPTR_0018s07590 (11)	scaffold_18:8035913-8036584(-) (11)	NA	Q5R7W3	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	AT4G33060.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os01g40050.2	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.150763.1.S1_at	A	A1TS	POPTR_0001s02730	POPTR_0001s02730 (11)	scaffold_1:2155071-2156206(+) (11)	POPTR_0003s08810 (6)	Q9LQK7	"Protein ABCI7, chloroplastic"	AT1G32500.1	non-intrinsic ABC protein 6 	LOC_Os01g03650.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr5g014460.1	FeS assembly protein SufD 	GO:0016226|iron-sulfur cluster assembly	GO:0005515|protein binding	NA
PtpAffx.150782.1.S1_at	A	A1MA	POPTR_0010s02240	POPTR_0010s02240 (9)	scaffold_10:2591326-2591817(-) (9)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G18590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os12g35350.2	"kelch repeat protein, putative, expressed"	Medtr8g139440.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150783.1.S1_at	A	A1TS	POPTR_0006s17890	POPTR_0006s17890 (11)	scaffold_6:16129424-16131726(+) (11)	NA	O65570	Villin-4	AT4G30160.1	villin 4 	LOC_Os06g44890.1	"villin protein, putative, expressed"	Medtr2g041680.1	Villin headpiece; Gelsolin region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150789.1.S1_s_at	A	A2TS	POPTR_0006s20090	POPTR_0006s20090 (11)//POPTR_0018s11820 (11)	scaffold_18:12487899-12488262(-) (11)//scaffold_6:19167489-19168231(-) (11)	NA	P93338	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	AT2G24270.3	aldehyde dehydrogenase 11A3 	LOC_Os08g34210.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g145740.1	"NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.150798.1.S1_at	A	A2TS	POPTR_0002s04100	POPTR_0002s04100 (11)//POPTR_0005s24420 (10)	scaffold_2:2561598-2563172(-) (11)//scaffold_5:22972373-22973350(+) (10)	NA	Q54NA3	Autophagy-related protein 9	AT2G31260.1	autophagy 9 (APG9) 	LOC_Os10g07994.1	"autophagy protein 9, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1508.1.S1_at	A	A1TS	POPTR_0011s15470	POPTR_0011s15470 (11)	scaffold_11:17557892-17558331(+) (11)	NA	Q8R1R3	"StAR-related lipid transfer protein 7, mitochondrial"	AT1G64720.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g02910.1	"membrane related protein CP5, putative, expressed"	Medtr3g122780.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150810.1.S1_s_at	A	A1TS	POPTR_0018s03050	POPTR_0018s03050 (11)	scaffold_18:2726070-2726460(-) (11)	NA	NA	NA	AT5G10750.1	Protein of unknown function (DUF1336) 	LOC_Os06g48320.1	"EDR2, putative, expressed"	Medtr3g138580.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150823.1.S1_at	A	A1TS	POPTR_0006s12810	POPTR_0006s12810 (11)	scaffold_6:9976160-9977792(+) (11)	NA	P79769	Translin	AT2G37020.1	Translin family protein 	LOC_Os10g30640.1	"translin, putative, expressed"	NA	NA	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.150867.1.S1_at	A	A1TS	POPTR_0007s10740	POPTR_0007s10740 (11)	scaffold_7:10786048-10787911(+) (11)	NA	Q9W6I1	RNA-binding protein with multiple splicing	AT2G42240.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g47300.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g016600.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.150868.1.S1_s_at	A	A2TS	POPTR_0008s02610	POPTR_0010s24060 (11)//POPTR_0008s02610 (11)	scaffold_10:20462168-20462214(+) (11)//scaffold_8:1303320-1303366(-) (11)	NA	Q8LK56	Transcriptional activator DEMETER	AT5G04560.1	HhH-GPD base excision DNA repair family protein 	LOC_Os01g11900.1	"hhH-GPD superfamily base excision DNA repair protein, expressed"	Medtr7g126590.1	Iron-sulfur cluster loop; DNA glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	"GO:0051539|""4 iron, 4 sulfur cluster binding""||GO:0004519|endonuclease activity"	NA
PtpAffx.15088.1.S1_at	A	A1TS	POPTR_0009s07510	POPTR_0009s07510 (9)	scaffold_9:6989421-6989884(-) (9)	NA	NA	NA	AT5G12330.4	Lateral root primordium (LRP) protein-related 	LOC_Os01g72490.2	"LRP1, putative, expressed"	Medtr5g096790.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150890.1.S1_at	A	A1TS	POPTR_0006s19730	POPTR_0006s19730 (9)	scaffold_6:18762322-18764696(-) (10)	NA	Q8GXU8	"1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic"	AT4G30580.1	Phospholipid/glycerol acyltransferase family protein 	LOC_Os10g35390.1	"acyltransferase, putative, expressed"	Medtr5g046470.1	1-acyl-sn-glycerol-3-phosphate acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.150892.1.S1_at	A	A1TS	POPTR_0014s07120	POPTR_0014s07120 (11)	scaffold_14:5366491-5367476(-) (11)	NA	Q96287	Shaggy-related protein kinase theta	AT4G00720.1	shaggy-like protein kinase 32 	LOC_Os10g37740.1	"CGMC_GSK.9 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g083630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.150913.1.S1_at	A	A2TS	POPTR_0001s04110	POPTR_0001s04110 (9)//POPTR_0003s20990 (9)	scaffold_1:3250700-3252335(+) (9)//scaffold_3:19329122-19330656(+) (9)	NA	Q92177	Calpain-3	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
PtpAffx.150914.1.S1_at	A	A1MS	POPTR_0005s10770	POPTR_0005s10770 (9)	scaffold_5:7733197-7733691(+) (9)	NA	Q9C5Y0	Phospholipase D delta	AT4G35790.2	phospholipase D delta 	LOC_Os09g37100.1	"phospholipase D, putative, expressed"	Medtr5g023030.1	C2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.150916.1.S1_at	A	A1TS	POPTR_0004s23850	POPTR_0004s23850 (11)	scaffold_4:22473443-22474013(+) (11)	NA	Q91W34	UPF0420 protein C16orf58 homolog	AT5G49820.1	"Protein of unknown function, DUF647 "	LOC_Os05g34650.1	"DUF647 domain containing protein, putative, expressed"	Medtr4g106950.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150928.1.S1_s_at	A	A1TS	POPTR_0018s13650	POPTR_0018s13650 (9)	scaffold_18:13913998-13914416(-) (9)//scaffold_4:10737490-10737531(+) (9)	NA	Q9SZR1	"Calcium-transporting ATPase 10, plasma membrane-type"	AT4G29900.1	autoinhibited Ca(2+)-ATPase 10 	LOC_Os04g51610.3	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.150929.1.S1_s_at	A	A1TS	POPTR_0003s16770	POPTR_0003s16770 (11)	scaffold_3:16295175-16297038(+) (11)	NA	Q84WJ2	Probable DNA primase large subunit	AT1G67320.2	"DNA primase, large subunit family "	LOC_Os07g22400.2	"POLA3 - Putative DNA polymerase alpha complex subunit, expressed"	Medtr4g147290.1	"Eukaryotic-type DNA primase, large subunit "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006269|""DNA replication, synthesis of RNA primer"""	GO:0003896|DNA primase activity	NA
PtpAffx.15093.1.S1_at	A	A1TS	POPTR_0003s08720	POPTR_0003s08720 (11)	scaffold_3:10128314-10129355(+) (11)	NA	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT5G46570.1	BR-signaling kinase 2 	LOC_Os10g42110.1	"protein kinase family protein, putative, expressed"	Medtr4g149490.1	Tyrosine protein kinase; Tetratricopeptide-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.150939.1.S1_at	A	A1TS	POPTR_0002s19050	POPTR_0002s19050 (10)	scaffold_2:14950970-14951485(-) (10)	NA	Q9NUP7	tRNA guanosine-2'-O-methyltransferase TRM13 homolog	AT4G01880.1	methyltransferases 	LOC_Os03g61750.1	expressed protein	NA	NA	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.150944.1.S1_at	A	A1MS	POPTR_0004s14830	POPTR_0004s14830 (9)	scaffold_4:15493234-15493596(+) (9)	NA	Q9LJK3	LAG1 longevity assurance homolog 2	AT3G19260.1	LAG1 homologue 2 	LOC_Os03g15750.1	"ASC1, putative, expressed"	Medtr4g129740.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.150951.1.S1_at	A	A1TS	POPTR_0010s07990	POPTR_0010s07990 (11)	scaffold_10:8976765-8977264(-) (11)	POPTR_0008s16910 (7)//POPTR_0008s18740 (7)	NA	NA	AT4G14310.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g56520.1	expressed protein	Medtr2g092990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150954.1.S1_s_at	A	A1TS	POPTR_0010s04820	POPTR_0010s04820 (11)	scaffold_10:5978915-5979327(-) (11)	POPTR_0008s19650 (6)	O04539	Paired amphipathic helix protein Sin3-like 4	AT1G70060.1	SIN3-like 4 	LOC_Os01g01960.1	"transcriptional repressor, putative, expressed"	Medtr5g037750.1	Paired amphipathic helix 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.15096.1.S1_a_at	A	A1TS	POPTR_0006s28790	POPTR_0006s28790 (11)	scaffold_6:26385157-26385306(+) (11)	NA	NA	NA	AT5G24890.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g32330.1	expressed protein	Medtr1g010670.1	"KID-containing protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150960.2.S1_at	A	A1TS	POPTR_0015s14940	POPTR_0015s14940 (11)	scaffold_15:14339017-14339517(-) (11)	NA	NA	NA	AT5G44860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os01g58620.1	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.150981.1.S1_at	A	A1TS	POPTR_0001s19500	POPTR_0001s19500 (11)	scaffold_1:17172199-17172711(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151.1.S1_at	A	A1TS	POPTR_0014s09360	POPTR_0014s09360 (11)	scaffold_14:6955368-6956027(-) (11)	NA	Q43766	Non-specific lipid-transfer protein 3	AT5G59310.1	lipid transfer protein 4 	NA	NA	Medtr4g036790.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151041.1.S1_s_at	A	A1TS	POPTR_0004s05510	POPTR_0004s05510 (11)	scaffold_4:4259480-4259877(-) (11)	POPTR_0004s05520 (8)//POPTR_0004s05540 (8)	P12412	Vignain	AT5G45890.1	senescence-associated gene 12 	LOC_Os04g13090.1	"vignain precursor, putative"	Medtr5g022460.1	"Peptidase C1A, papain; Peptidase M14, carboxypeptidase A; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.151056.1.S1_at	A	A1TS	POPTR_0014s01710	POPTR_0014s01710 (11)	scaffold_14:1599102-1600037(+) (11)	NA	Q5S1U6	Interferon-related developmental regulator 1	AT1G27760.1	interferon-related developmental regulator family protein / IFRD protein family 	LOC_Os07g39900.1	"interferon-related developmental regulator, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151091.1.S1_s_at	A	A1TS	POPTR_0001s31650	POPTR_0001s31650 (11)	scaffold_1:30022834-30023042(-) (11)	NA	NA	NA	AT3G18800.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g59050.1	hypothetical protein	Medtr3g144210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151112.1.S1_s_at	A	A2TS	POPTR_0005s11640	POPTR_0005s11640 (11)//POPTR_0007s09550 (9)	scaffold_5:8436258-8436880(-) (11)//scaffold_7:9012906-9013506(+) (9)	NA	Q9Y4A5	Transformation/transcription domain-associated protein	AT2G17930.1	Phosphatidylinositol 3- and 4-kinase family protein with FAT domain 	LOC_Os07g45070.1	"FAT domain-containing protein, putative, expressed"	Medtr5g021910.1	"PIK-related kinase, FATC "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
PtpAffx.15112.1.S1_at	A	A1TS	POPTR_0015s05680	POPTR_0015s05680 (11)	scaffold_15:6020638-6021151(-) (11)	NA	Q9FLX5	ABC transporter G family member 8	AT5G52860.1	ABC-2 type transporter family protein 	LOC_Os06g30730.1	"ABC-2 type transporter domain containing protein, expressed"	Medtr1g126360.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
PtpAffx.151124.1.S1_s_at	A	A1TS	POPTR_0001s26640	POPTR_0001s26640 (11)	scaffold_1:25622997-25625740(+) (11)	NA	Q9SYC8	1-acyl-sn-glycerol-3-phosphate acyltransferase 3	AT1G51260.1	lysophosphatidyl acyltransferase 3 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.151134.1.S1_at	A	A1TS	POPTR_0004s05270	POPTR_0004s05270 (11)	scaffold_4:4002462-4003466(-) (11)	NA	P93162	"Magnesium-chelatase subunit chlI, chloroplastic"	AT5G45930.1	magnesium chelatase i2 	LOC_Os03g36540.1	"magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed"	Medtr2g018830.1	"Magnesium chelatase, ChlI subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151137.1.S1_at	A	A1TS	POPTR_0005s08490	POPTR_0005s08490 (11)	scaffold_5:5905050-5906123(-) (11)	NA	P73627	Uncharacterized protein sll1770	AT5G64940.2	ABC2 homolog 13 	LOC_Os02g36570.1	"ABC1 family domain containing protein, putative, expressed"	Medtr3g144970.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151137.1.S1_s_at	A	A1TS	POPTR_0005s08490	POPTR_0005s08490 (11)	scaffold_5:5902155-5904639(-) (11)	POPTR_0007s06450 (8)	P73627	Uncharacterized protein sll1770	AT5G64940.2	ABC2 homolog 13 	LOC_Os02g36570.1	"ABC1 family domain containing protein, putative, expressed"	Medtr3g144970.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151141.1.S1_at	A	A1TS	POPTR_0005s05070	POPTR_0005s05070 (9)	scaffold_5:3374163-3376023(+) (9)	NA	Q9FQ04	5'-3' exoribonuclease 4	AT1G54490.1	exoribonuclease 4 	LOC_Os03g58060.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr7g140440.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.151150.1.S1_at	A	A1TS	POPTR_0015s03710	POPTR_0015s03710 (11)	scaffold_15:3551013-3551814(-) (11)	NA	O95294	RasGAP-activating-like protein 1	AT3G18370.1	C2 domain-containing protein 	LOC_Os01g03820.1	"C2 domain containing protein, putative, expressed"	Medtr6g028380.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151152.1.S1_s_at	A	A1TS	POPTR_0008s22830	POPTR_0008s22830 (11)	scaffold_8:17613223-17613768(-) (11)	NA	Q9MA55	Acyl-CoA-binding domain-containing protein 4	AT5G18590.2	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os12g35350.2	"kelch repeat protein, putative, expressed"	Medtr8g139440.1	"Serine/threonine protein phosphatase, BSU1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151163.1.S1_at	A	A1TS	POPTR_0016s11410	POPTR_0016s11410 (11)	scaffold_16:10264193-10265478(+) (11)	NA	Q06548	"Protein kinase APK1A, chloroplastic"	AT1G07570.1	Protein kinase superfamily protein 	LOC_Os03g60710.1	"protein kinase domain containing protein, expressed"	Medtr5g087270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.151173.1.S1_s_at	A	A1TS	POPTR_0017s06180	POPTR_0017s06180 (11)	scaffold_17:4792559-4792735(-) (11)	NA	P54967	Biotin synthase	AT2G43360.1	Radical SAM superfamily protein 	LOC_Os08g42730.1	"radical SAM enzyme, putative, expressed"	Medtr4g104400.1	Biotin and thiamin synthesis associated 	GO:0044283|small molecule biosynthetic process||GO:0009102|biotin biosynthetic process||GO:0044281|small molecule metabolic process	GO:0051536|iron-sulfur cluster binding||GO:0004076|biotin synthase activity	NA
PtpAffx.151180.1.S1_at	A	A1TS	POPTR_0005s21790	POPTR_0005s21790 (9)	scaffold_5:20875088-20875417(-) (9)	NA	NA	NA	AT1G34000.1	one-helix protein 2 	LOC_Os01g40710.1	"high light inducible protein, putative, expressed"	Medtr1g124760.1	"one-helix protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151190.1.S1_s_at	A	A1TS	POPTR_0017s08600	POPTR_0017s08600 (11)	scaffold_17:7213437-7213818(-) (11)	NA	Q54Z26	Serine hydroxymethyltransferase 1	AT4G13930.1	serine hydroxymethyltransferase 4 	LOC_Os12g22030.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr4g133030.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
PtpAffx.151201.1.S1_s_at	A	A2TS	POPTR_0004s15980	POPTR_0009s11660 (11)//POPTR_0004s15980 (11)	scaffold_4:16450893-16451460(-) (11)//scaffold_9:9648074-9648619(-) (11)	NA	Q9SXA1	Phosphatidylinositol 4-kinase alpha	AT1G49340.1	Phosphatidylinositol 3- and 4-kinase family protein 	LOC_Os03g50320.1	"phosphatidylinositol 4-kinase PI4K, putative, expressed"	Medtr3g159720.1	Ribosomal protein L2; Protein kinase-like; ; 	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor""||GO:0004428|inositol or phosphatidylinositol kinase activity"	NA
PtpAffx.151209.1.S1_at	A	A1TS	POPTR_0016s07560	POPTR_0016s07560 (11)	scaffold_16:5441489-5442667(-) (11)	NA	NA	NA	AT5G06240.1	embryo defective 2735 	LOC_Os05g02190.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151228.1.S1_s_at	A	A1TS	POPTR_0010s12880	POPTR_0010s12880 (11)	scaffold_10:12832493-12832730(-) (11)	NA	NA	NA	AT1G68185.1	Ubiquitin-like superfamily protein 	LOC_Os01g42250.1	expressed protein	AC235678_17.1	hypothetical protein AC235678.1 90359-87597 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151232.1.S1_at	A	A1TS	POPTR_0018s06800	POPTR_0018s06800 (10)	scaffold_18:6853982-6856316(+) (10)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT5G56590.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os01g53750.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g160090.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.151234.1.S1_at	A	A1TS	POPTR_0012s13050	POPTR_0012s13050 (9)	scaffold_12:13353280-13354363(-) (9)	NA	NA	NA	AT3G49050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.151241.1.S1_at	A	A1TS	POPTR_0007s12690	POPTR_0007s12690 (9)	scaffold_7:12930624-12930752(+) (9)	NA	Q42404	U1 small nuclear ribonucleoprotein 70 kDa	AT3G50670.1	U1 small nuclear ribonucleoprotein-70K 	LOC_Os10g02630.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr8g093540.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.151246.1.S1_at	A	A1TS	POPTR_0004s22900	POPTR_0004s22900 (11)	scaffold_4:21740307-21742836(-) (11)	NA	Q8W3M6	Ubiquitin-like domain-containing CTD phosphatase	AT4G06599.1	ubiquitin family protein 	LOC_Os01g65450.2	"ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed"	Medtr4g137220.1	Ubiquitin; NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151246.1.S1_s_at	A	A1TS	POPTR_0004s22900	POPTR_0004s22900 (11)	scaffold_4:21740373-21742775(-) (11)	NA	Q8W3M6	Ubiquitin-like domain-containing CTD phosphatase	AT4G06599.1	ubiquitin family protein 	LOC_Os01g65450.2	"ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed"	Medtr4g137220.1	Ubiquitin; NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15128.1.A1_at	A	A1TS	POPTR_0016s03130	POPTR_0016s03130 (11)	scaffold_16:1586657-1587188(+) (11)	NA	Q940G6	Probable gibberellin receptor GID1L3	AT1G68620.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33940.1	"alpha/beta hydrolase fold, putative, expressed"	AC233660_29.1	Alpha/beta hydrolase fold-3 AC233660.2 106938-105877 H EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
PtpAffx.151286.1.S1_s_at	A	A1TS	POPTR_0003s01120	POPTR_0003s01120 (11)	scaffold_14:1084865-1085369(+) (11)//scaffold_3:980274-980778(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151297.1.S1_s_at	A	A1TS	POPTR_0001s09910	POPTR_0001s09910 (11)	scaffold_1:7650275-7650979(-) (11)	NA	P22503	Endoglucanase	AT4G09740.1	glycosyl hydrolase 9B14 	LOC_Os08g29770.1	"endoglucanase, putative, expressed"	Medtr5g010040.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.151298.1.S1_at	A	A1TS	POPTR_0016s05740	POPTR_0016s05740 (11)	scaffold_16:3677888-3678445(-) (11)	NA	NA	NA	AT2G41640.1	Glycosyltransferase family 61 protein 	LOC_Os01g31370.1	"glycosyltransferase, putative, expressed"	Medtr7g108510.1	Protein of unknown function DUF563 	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.151308.1.S1_s_at	A	A2TS	POPTR_0018s13380	POPTR_0018s13380 (11)//POPTR_0018s13390 (11)	scaffold_18:13712365-13712829(+) (11)//scaffold_18:13721184-13721648(+) (11)	NA	Q50EK0	Cytochrome P450 716B2	AT5G36110.1	"cytochrome P450, family 716, subfamily A, polypeptide 1 "	LOC_Os07g33580.1	"cytochrome P450, putative, expressed"	Medtr4g136970.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.151309.1.S1_s_at	A	A1TS	POPTR_0019s07830	POPTR_0019s07830 (11)	scaffold_19:9056678-9056981(+) (11)	NA	Q9DBY1	E3 ubiquitin-protein ligase synoviolin	AT3G16090.1	RING/U-box superfamily protein 	LOC_Os06g19680.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g007790.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151314.1.S1_at	A	A1TS	POPTR_0016s07630	POPTR_0016s07630 (11)	scaffold_16:5479134-5479927(-) (11)	NA	Q9ZE28	Uncharacterized protein RP120	AT5G22350.1	Protein of unknown function (DUF1022) 	LOC_Os02g33230.1	"nucleoside-diphosphate-sugar epimerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151315.1.S1_at	A	A1TS	POPTR_0002s22860	POPTR_0002s22860 (11)	scaffold_2:19899484-19900600(+) (11)	NA	P93051	Sugar transporter ERD6-like 7	AT2G48020.1	Major facilitator superfamily protein 	LOC_Os11g42430.1	"transporter family protein, putative, expressed"	Medtr8g139840.1	General substrate transporter; Sugar transporter superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.151322.1.S1_at	A	A1TS	POPTR_0006s14840	POPTR_0006s14840 (11)	scaffold_6:12268450-12268969(+) (11)	NA	Q7T3C6	Cleavage and polyadenylation specificity factor subunit 5	AT4G29820.1	homolog of CFIM-25 	LOC_Os08g30820.1	"cleavage and polyadenylation specificity factor subunit 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151334.1.S1_at	A	A1TS	POPTR_0012s01340	POPTR_0012s01340 (10)	scaffold_12:954686-955053(+) (10)	NA	Q4V8K4	Solute carrier family 25 member 39	AT4G27940.1	manganese tracking factor for mitochondrial SOD2 	LOC_Os08g29720.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g124670.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151337.1.S1_at	A	A1TS	POPTR_0007s04320	POPTR_0007s04320 (11)	scaffold_7:2635128-2638914(-) (11)	NA	NA	NA	AT5G20680.3	TRICHOME BIREFRINGENCE-LIKE 16 	LOC_Os11g13800.2	expressed protein	Medtr4g143010.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151338.1.S1_at	A	A1TS	POPTR_0011s17280	POPTR_0011s17280 (10)	scaffold_11:18862957-18865666(+) (10)	NA	Q5ZMQ9	Peroxisomal targeting signal 1 receptor	AT5G56290.1	peroxin 5 	LOC_Os08g39080.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g010600.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151340.1.S1_at	A	A1TS	POPTR_0006s28110	POPTR_0006s28110 (11)	scaffold_6:25922479-25923259(-) (11)	NA	Q03387	Eukaryotic initiation factor iso-4F subunit p82-34	AT5G57870.2	MIF4G domain-containing protein / MA3 domain-containing protein 	LOC_Os04g42140.1	"eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed"	Medtr8g145060.1	"Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 "	GO:0016070|RNA metabolic process||GO:0044260|cellular macromolecule metabolic process	GO:0005515|protein binding	NA
PtpAffx.151342.1.S1_at	A	A1TS	POPTR_0019s07900	POPTR_0019s07900 (9)	scaffold_19:9204379-9206316(+) (9)	POPTR_0013s09680 (7)	Q6P5F9	Exportin-1	AT5G17020.1	exportin 1A 	LOC_Os03g64080.1	"retrotransposon protein, putative, Ty1-copia subclass"	Medtr4g106960.1	"Importin-beta, N-terminal; "	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.151346.1.S1_at	A	A1TS	POPTR_0001s35490	POPTR_0001s35490 (10)	scaffold_1:33828430-33829515(+) (10)	NA	Q6NQK2	NAC domain-containing protein 8	AT3G01600.1	NAC domain containing protein 44 	LOC_Os02g38130.1	"no apical meristem protein, putative, expressed"	Medtr5g069400.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.15135.1.A1_s_at	A	A1TS	POPTR_0008s13910	POPTR_0008s13910 (11)	scaffold_8:9183875-9184602(+) (11)	NA	Q9SIS3	65-kDa microtubule-associated protein 6	AT2G01910.2	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os09g27700.2	"microtubule associated protein, putative, expressed"	Medtr1g046560.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151356.1.S1_at	A	A1TS	POPTR_0001s24550	POPTR_0001s24550 (9)	scaffold_1:23803248-23803641(-) (9)	NA	Q9SNC6	U-box domain-containing protein 13	AT3G46510.1	plant U-box 13 	LOC_Os03g16824.1	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.151356.3.S1_a_at	A	A1TS	POPTR_0009s03500	POPTR_0009s03500 (11)	scaffold_9:4129822-4130525(-) (11)	POPTR_0001s24550 (6)	Q9SNC6	U-box domain-containing protein 13	AT3G46510.1	plant U-box 13 	LOC_Os03g16824.1	"spotted leaf 11, putative, expressed"	Medtr7g088030.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
PtpAffx.151360.1.S1_at	A	A1TS	POPTR_0017s14360	POPTR_0017s14360 (11)	scaffold_17:14450378-14450441(+) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT5G16000.1	NSP-interacting kinase 1 	LOC_Os06g16330.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.151364.1.S1_at	A	A1MS	POPTR_0008s18310	POPTR_0008s18310 (11)	scaffold_8:12253504-12254059(-) (11)	NA	Q9SAF1	Actin-related protein 3	AT1G13180.1	Actin-like ATPase superfamily protein 	LOC_Os02g38340.1	"actin, putative, expressed"	Medtr2g008170.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.151371.1.S1_at	A	A1TS	POPTR_0019s06270	POPTR_0019s06270 (9)	scaffold_19:6924703-6925853(+) (11)	NA	O22682	"Probable cysteine synthase, chloroplastic"	AT3G03630.1	cysteine synthase 26 	LOC_Os01g74650.1	"cysteine synthase, mitochondrial precursor, putative, expressed"	Medtr7g103940.1	Cysteine synthase A 	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
PtpAffx.151377.1.S1_a_at	A	A2TS	POPTR_0002s11140	POPTR_0005s19550 (11)//POPTR_0002s11140 (11)	scaffold_2:8177521-8178127(-) (11)//scaffold_5:18422820-18423417(-) (11)	NA	Q8GXL7	GATA transcription factor 24	AT3G21175.2	ZIM-like 1 	LOC_Os03g47970.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149720.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.151377.1.S1_at	A	A1TS	POPTR_0005s19550	POPTR_0005s19550 (9)	scaffold_5:18422455-18423799(-) (10)	NA	Q8H1G0	GATA transcription factor 28	AT3G21175.2	ZIM-like 1 	LOC_Os03g47970.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149720.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.151377.2.S1_a_at	A	A1TS	POPTR_0002s11140	POPTR_0002s11140 (11)	scaffold_2:8178122-8179134(-) (11)	NA	Q8GXL7	GATA transcription factor 24	AT3G21175.2	ZIM-like 1 	LOC_Os03g47970.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149720.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.151397.1.S1_s_at	A	A1TS	POPTR_0014s18540	POPTR_0014s18540 (11)	scaffold_14:15853893-15854336(+) (11)	NA	NA	NA	AT4G28760.2	Protein of unknown function (DUF3741) 	LOC_Os03g04990.1	expressed protein	Medtr7g117880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151401.1.S1_at	A	A1MS	POPTR_0017s13670	POPTR_0017s13670 (11)	scaffold_17:13767614-13767649(-) (11)	NA	Q9LFV5	F-box/kelch-repeat protein At5g15710	AT5G15710.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g57290.1	"OsFBX153 - F-box domain containing protein, expressed"	Medtr7g015440.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151417.1.S1_at	A	A1TS	POPTR_0010s19610	POPTR_0010s19610 (9)	scaffold_10:17491495-17493006(-) (10)	NA	Q39033	Phosphoinositide phospholipase C 2	AT3G08510.2	phospholipase C 2 	LOC_Os07g49330.1	"phospholipase C, putative, expressed"	Medtr3g093840.1	C2; EF-Hand type; 	GO:0006629|lipid metabolic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0023052|signaling	GO:0004435|phosphoinositide phospholipase C activity	NA
PtpAffx.151418.1.S1_at	A	A1TS	POPTR_0010s00850	POPTR_0010s00850 (9)	scaffold_10:543908-544842(-) (9)	NA	Q9LRZ5	Phospholipase D p1	AT3G16785.1	phospholipase D P1 	LOC_Os05g29050.2	"phospholipase D p1, putative, expressed"	Medtr1g100110.1	Phospholipase D/Transphosphatidylase; Pleckstrin homology-type 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.151420.1.S1_at	A	A1TS	POPTR_0016s11900	POPTR_0016s11900 (10)	scaffold_16:11074684-11075200(+) (10)	NA	Q9SS80	"UPF0503 protein At3g09070, chloroplastic"	AT3G09070.1	Protein of unknown function (DUF740) 	LOC_Os05g37800.1	"DUF740 domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151427.1.S1_s_at	A	A1TS	POPTR_0006s11920	POPTR_0006s11920 (11)	scaffold_6:9114384-9115509(-) (11)	NA	NA	NA	AT2G36630.1	Sulfite exporter TauE/SafE family protein 	LOC_Os03g51650.1	"membrane protein, putative, expressed"	Medtr1g073760.1	"membrane protein-like protein, related "	NA	NA	GO:0016021|integral to membrane
PtpAffx.151462.1.S1_s_at	A	A2TS	POPTR_0001s36710	POPTR_0001s36710 (11)//POPTR_0011s09160 (11)	scaffold_1:35428363-35428714(-) (11)//scaffold_11:11317752-11318102(-) (11)	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.1	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.2	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr5g100690.1	"Dihydrolipoamide acetyltransferase, long form "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.151469.1.S1_at	A	A1TS	POPTR_0007s04110	POPTR_0007s04110 (10)	scaffold_7:2465874-2467405(+) (10)	NA	Q941R4	GDP-mannose transporter	AT2G13650.3	golgi nucleotide sugar transporter 1 	LOC_Os08g01610.1	"DUF250 domain containing protein, putative, expressed"	Medtr3g143330.1	"GDP-mannose transporter, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151471.1.S1_at	A	A1TS	POPTR_0015s07760	POPTR_0015s07760 (10)	scaffold_15:9053506-9055215(+) (10)	NA	Q8GYP6	Pentatricopeptide repeat-containing protein At1g18900	AT1G18900.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g44170.1	"pentatricopeptide, putative, expressed"	Medtr2g022110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151493.1.S1_at	A	A1TS	POPTR_0014s14580	POPTR_0014s14580 (11)	scaffold_14:10666224-10669025(-) (11)	NA	P73530	30S ribosomal protein S1 homolog A	AT3G23700.1	Nucleic acid-binding proteins superfamily 	LOC_Os03g62780.1	"S1 RNA binding domain containing protein, expressed"	Medtr3g104300.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
PtpAffx.151497.1.S1_at	A	A1TS	POPTR_0011s12440	POPTR_0011s12440 (11)	scaffold_11:15178407-15179821(-) (11)	NA	Q2KIY1	Peroxisomal membrane protein 2	AT1G52870.2	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os03g38730.1	"peroxisomal membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.151497.1.S1_s_at	A	A1TS	POPTR_0011s12440	POPTR_0011s12440 (10)	scaffold_11:15178452-15180464(-) (10)	NA	Q2KIY1	Peroxisomal membrane protein 2	AT1G52870.2	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os03g38730.1	"peroxisomal membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.151497.2.S1_at	A	A1TS	POPTR_0001s41510	POPTR_0001s41510 (11)	scaffold_1:41128339-41129368(-) (11)	NA	Q2KIY1	Peroxisomal membrane protein 2	AT1G52870.2	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 	LOC_Os03g38730.1	"peroxisomal membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.151516.1.A1_at	A	A1TS	POPTR_0005s09700	POPTR_0005s09700 (11)	scaffold_5:6782133-6782307(-) (11)	NA	Q8T2I8	Serine/threonine-protein kinase sepA	AT3G13530.1	mitogen-activated protein kinase kinase kinase 7 	LOC_Os04g56530.1	"STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr4g100710.1	Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.151532.1.A1_s_at	A	A1TS	POPTR_0014s16660	POPTR_0014s16660 (11)	scaffold_14:12763742-12764104(+) (11)	NA	P73627	Uncharacterized protein sll1770	AT3G07700.2	Protein kinase superfamily protein 	LOC_Os09g07660.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr3g106570.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151540.1.A1_at	A	A1TS	POPTR_0004s13060	POPTR_0004s13060 (9)	scaffold_23:586158-586340(+) (9)//scaffold_4:12386453-12386635(-) (9)	NA	Q6FRZ3	Endoplasmic reticulum vesicle protein 25	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.151554.1.A1_at	A	A1TA	POPTR_0006s22690	POPTR_0006s22690 (9)	scaffold_6:21627575-21628195(-) (11)	POPTR_1895s00200 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151555.1.A1_at	A	A1TS	POPTR_0019s06290	POPTR_0019s06290 (11)	scaffold_19:6946131-6946657(-) (11)	NA	P81392	Myb-related protein 306	AT1G08810.1	myb domain protein 60 	LOC_Os12g03150.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g103980.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15157.1.S1_at	A	A1TS	POPTR_0012s01120	POPTR_0012s01120 (9)	scaffold_12:774429-774754(-) (9)	NA	Q38953	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G26560.1	"ATP-dependent RNA helicase, putative "	LOC_Os02g19860.1	"pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed"	Medtr1g143710.1	"Helicase, C-terminal; ATP-dependent helicase HrpB; Nucleic acid-binding, OB-fold, subgroup; "	NA	GO:0003723|RNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.151587.1.A1_at	A	A1TS	POPTR_0004s02170	POPTR_0004s02170 (11)	scaffold_4:1339403-1340073(-) (11)	NA	Q9NUW8	Tyrosyl-DNA phosphodiesterase 1	AT5G15170.1	tyrosyl-DNA phosphodiesterase-related 	LOC_Os07g34598.1	"tyrosyl-DNA phosphodiesterase 1, putative, expressed"	Medtr7g047060.1	Tyrosyl-DNA phosphodiesterase 	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008081|phosphoric diester hydrolase activity	GO:0005634|nucleus
PtpAffx.151612.1.A1_at	A	A1TS	POPTR_0006s22220	POPTR_0006s22220 (10)	scaffold_6:21268815-21268947(+) (10)	NA	NA	NA	NA	NA	LOC_Os02g33320.3	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.151612.1.A1_s_at	A	A1TS	POPTR_0006s22220	POPTR_0006s22220 (11)	scaffold_6:21268554-21268781(+) (11)	NA	NA	NA	NA	NA	LOC_Os02g33320.3	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.151626.1.A1_at	A	A1TS	POPTR_0001s21610	POPTR_0001s21610 (10)	scaffold_1:20123982-20124510(+) (11)	NA	NA	NA	AT1G68140.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.1	expressed protein	AC233560_2.1	Protein of unknown function DUF1644 AC233560.2 3733-2305 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151632.1.A1_at	A	A1MS	POPTR_0010s12970	POPTR_0010s12970 (10)	scaffold_10:12898506-12898930(+) (10)	NA	NA	NA	AT1G15060.1	"Uncharacterised conserved protein UCP031088, alpha/beta hydrolase "	LOC_Os01g49760.1	expressed protein	Medtr6g086800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151641.1.A1_at	A	A1TS	POPTR_0014s01600	POPTR_0014s01600 (11)	scaffold_14:1502207-1503037(+) (11)	NA	Q58DD9	GPN-loop GTPase 2	AT5G22370.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g34950.1	"ATP binding protein, putative, expressed"	Medtr5g096990.1	"Protein of unknown function, ATP binding "	NA	GO:0000166|nucleotide binding	NA
PtpAffx.151685.1.A1_at	A	A1TS	POPTR_0001s29380	POPTR_0001s29380 (10)	scaffold_1:28085812-28086446(+) (10)	NA	Q3EC11	Probable S-acyltransferase At2g14255	AT2G14255.1	Ankyrin repeat family protein with DHHC zinc finger domain 	LOC_Os11g34860.1	"palmitoyltransferase TIP1, putative, expressed"	Medtr4g121920.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.151746.1.S1_at	A	A1MS	POPTR_0003s04340	POPTR_0003s04340 (11)	scaffold_3:5056405-5056873(+) (11)	NA	O94432	Uncharacterized RNA-binding protein C660.15	AT1G17640.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g12850.1	"RNA recognition motif containing protein, expressed"	Medtr3g106660.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.151763.1.A1_at	A	A1TS	POPTR_0013s14020	POPTR_0013s14020 (11)	scaffold_13:14334425-14334830(-) (11)	NA	NA	NA	AT4G03420.1	Protein of unknown function (DUF789) 	LOC_Os10g35150.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15177.1.S1_at	A	A1MS	POPTR_0013s02600	POPTR_0013s02600 (10)	scaffold_13:1540021-1540501(-) (10)	NA	NA	NA	AT2G24960.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g02500.1	conserved hypothetical protein	Medtr5g022470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151773.1.A1_at	A	A1TS	POPTR_0009s03490	POPTR_0009s03490 (9)	scaffold_9:4118726-4118998(+) (10)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.2	OBF-binding protein 3 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.1518.1.A1_at	A	A1TS	POPTR_0009s07510	POPTR_0009s07510 (11)	scaffold_9:6991368-6991753(-) (11)	NA	NA	NA	AT5G12330.4	Lateral root primordium (LRP) protein-related 	LOC_Os01g72490.2	"LRP1, putative, expressed"	Medtr5g096790.1	"Zinc finger, LRP1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15180.1.S1_at	A	A1TS	POPTR_0009s06980	POPTR_0009s06980 (11)	scaffold_9:6643258-6643581(+) (11)	NA	B0W2S0	Protein KIAA0664 homolog	AT3G52140.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os02g48620.2	"tetratricopeptide repeat, putative, expressed"	Medtr3g030760.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151801.1.A1_at	A	A1TS	POPTR_0009s02580	POPTR_0009s02580 (10)	scaffold_9:3357293-3357802(-) (10)	NA	O49839	"Protein kinase 2A, chloroplastic"	AT1G14370.1	protein kinase 2A 	LOC_Os03g07430.2	"protein kinase domain containing protein, expressed"	Medtr5g095520.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.151831.1.A1_a_at	A	A1TS	POPTR_0005s09660	POPTR_0005s09660 (11)	scaffold_5:6759115-6759747(+) (11)	NA	Q96H96	"Para-hydroxybenzoate--polyprenyltransferase, mitochondrial"	AT4G23660.2	polyprenyltransferase 1 	LOC_Os08g23320.1	"para-hydroxybenzoate--polyprenyltransferase, mitochondrial precursor, putative, expressed"	Medtr7g080490.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
PtpAffx.151844.1.A1_at	A	A1TS	POPTR_0018s02890	POPTR_0018s02890 (10)	scaffold_18:2530038-2530480(-) (10)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT2G24820.1	translocon at the inner envelope membrane of chloroplasts 55-II 	LOC_Os02g54980.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr3g138540.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.151870.1.A1_at	A	A1TS	POPTR_0003s13970	POPTR_0003s13970 (10)	scaffold_3:14196706-14197157(-) (10)	NA	P0CH01	Putative RING-H2 finger protein ATL21A	AT5G53110.1	RING/U-box superfamily protein 	LOC_Os01g53500.1	"RING-H2 finger protein ATL2M, putative, expressed"	Medtr3g124280.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151873.1.A1_at	A	A1TS	POPTR_0010s15580	POPTR_0010s15580 (10)	scaffold_10:14742357-14743023(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g06510.2	"4Fe-4S binding domain containing protein, expressed"	Medtr2g038230.1	"4Fe-4S ferredoxin, iron-sulfur binding "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.151874.1.A1_at	A	A1TS	POPTR_0019s05510	POPTR_0019s05510 (11)	scaffold_19:5873711-5874905(+) (11)	NA	Q96SZ5	2-aminoethanethiol dioxygenase	AT5G15120.1	Protein of unknown function (DUF1637) 	LOC_Os12g42860.1	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g103170.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
PtpAffx.151883.1.A1_s_at	A	A1TS	POPTR_0005s10780	POPTR_0005s10780 (11)	scaffold_5:7739557-7740112(+) (11)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT4G35785.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os06g50890.1	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.151889.1.A1_at	A	A1MS	POPTR_0001s18120	POPTR_0001s18120 (11)	scaffold_1:15168861-15169075(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g086670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151904.1.A1_at	A	A1TS	POPTR_0003s06390	POPTR_0003s06390 (11)	scaffold_3:7873614-7875360(-) (11)	NA	NA	NA	AT1G54150.1	E3 Ubiquitin ligase family protein 	LOC_Os03g08000.1	expressed protein	Medtr8g025010.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151912.1.A1_at	A	A1TS	POPTR_0007s04120	POPTR_0007s04120 (11)	scaffold_7:2485184-2485712(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT3G20015.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58070.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151954.1.S1_a_at	A	A2TS	POPTR_0002s04230	POPTR_0002s04230 (11)//POPTR_0005s24310 (11)	scaffold_2:2651308-2651486(-) (11)//scaffold_5:22909126-22909306(+) (11)	NA	Q94JW0	Deoxyhypusine hydroxylase	AT3G58180.1	ARM repeat superfamily protein 	LOC_Os12g06620.1	"deoxyhypusine hydroxylase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151954.1.S1_at	A	A1TS	POPTR_0002s04230	POPTR_0002s04230 (11)	scaffold_2:2651134-2652219(-) (11)	NA	Q94JW0	Deoxyhypusine hydroxylase	AT3G58180.1	ARM repeat superfamily protein 	LOC_Os12g06620.1	"deoxyhypusine hydroxylase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151954.3.S1_a_at	A	A2TS	POPTR_0002s04230	POPTR_0002s04230 (11)//POPTR_0005s24310 (11)	scaffold_2:2652915-2653265(-) (11)//scaffold_5:22907404-22907757(+) (11)	NA	Q94JW0	Deoxyhypusine hydroxylase	AT3G58180.1	ARM repeat superfamily protein 	LOC_Os12g06620.1	"deoxyhypusine hydroxylase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151954.3.S1_at	A	A1TS	POPTR_0005s24310	POPTR_0005s24310 (9)	scaffold_5:22906690-22907823(+) (11)	NA	Q94JW0	Deoxyhypusine hydroxylase	AT3G58180.1	ARM repeat superfamily protein 	LOC_Os12g06620.1	"deoxyhypusine hydroxylase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151964.1.S1_at	A	A1TS	POPTR_0018s05190	POPTR_0018s05190 (11)	scaffold_18:4684502-4685046(+) (11)	NA	O04089	"Zinc transporter 4, chloroplastic"	AT1G10970.1	zinc transporter 4 precursor 	LOC_Os06g37010.2	"metal cation transporter, putative, expressed"	Medtr3g139990.1	"Cytochrome c oxidase, subunit I; Zinc/iron permease "	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.151964.1.S1_s_at	A	A1TS	POPTR_0018s05190	POPTR_0018s05190 (11)	scaffold_18:4685074-4685535(+) (11)	NA	O04089	"Zinc transporter 4, chloroplastic"	AT1G10970.1	zinc transporter 4 precursor 	LOC_Os06g37010.2	"metal cation transporter, putative, expressed"	Medtr3g139990.1	"Cytochrome c oxidase, subunit I; Zinc/iron permease "	GO:0030001|metal ion transport	GO:0046873|metal ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.15197.1.S1_at	A	A1TS	POPTR_0001s00620	POPTR_0001s00620 (10)	scaffold_1:535495-535789(+) (10)	NA	NA	NA	AT4G25225.1	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35736.2); Has 78 Blast hits to 78 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g13534.1	expressed protein	AC233655_18.1	hypothetical protein AC233655.2 124799-122734 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.151978.1.S1_at	A	A1TS	POPTR_0012s08370	POPTR_0012s08370 (10)	scaffold_12:9464956-9465871(-) (10)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.151997.1.S1_s_at	A	A1TS	POPTR_0008s08050	POPTR_0008s08050 (11)	scaffold_8:4990144-4990576(-) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G44680.1	DNA glycosylase superfamily protein 	LOC_Os01g58550.1	"methyladenine glycosylase, putative, expressed"	Medtr2g085500.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.152000.1.S1_s_at	A	A1TS	POPTR_0001s19070	POPTR_0001s19070 (11)	scaffold_1:16363198-16365677(+) (11)	NA	Q869R9	Myb-like protein J	AT3G16350.1	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.152014.1.S1_at	A	A1TS	POPTR_0015s07560	POPTR_0015s07560 (10)	scaffold_15:8845775-8846227(+) (10)	NA	NA	NA	AT1G18850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 40 Blast hits to 40 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g02170.2	expressed protein	Medtr3g113570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152018.1.S1_a_at	A	A1TS	POPTR_0002s05630	POPTR_0002s05630 (11)	scaffold_2:3703337-3703555(-) (11)	POPTR_0005s22870 (6)	Q84LH8	Transcription factor PIF5	AT2G43010.2	phytochrome interacting factor 4 	LOC_Os12g41650.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g118010.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.15202.1.S1_at	A	A1TS	POPTR_0006s20430	POPTR_0006s20430 (11)	scaffold_6:19443793-19446873(+) (11)	NA	Q01490	Peptidyl-prolyl cis-trans isomerase B	AT5G35100.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g19610.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr7g134340.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.15203.1.S1_a_at	A	A1TS	POPTR_0007s13650	POPTR_0007s13650 (11)	scaffold_7:13674154-13674474(-) (11)	NA	Q70E96	Aldehyde dehydrogenase family 3 member F1	AT4G36250.1	aldehyde dehydrogenase 3F1 	LOC_Os04g45720.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g090560.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.15203.1.S1_at	A	A1TS	POPTR_0007s13650	POPTR_0007s13650 (11)	scaffold_7:13674083-13674616(-) (11)	NA	Q70E96	Aldehyde dehydrogenase family 3 member F1	AT4G36250.1	aldehyde dehydrogenase 3F1 	LOC_Os04g45720.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g090560.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.152030.1.S1_at	A	A1TS	POPTR_0001s36330	POPTR_0001s36330 (11)	scaffold_1:34891294-34891380(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.1	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152030.1.S1_s_at	A	A1TS	POPTR_0001s36330	POPTR_0001s36330 (11)	scaffold_1:34888626-34891422(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT5G40780.1	lysine histidine transporter 1 	LOC_Os08g03350.1	"amino acid transporter, putative, expressed"	Medtr2g122930.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152037.1.S1_at	A	A1TS	POPTR_0001s36300	POPTR_0001s36300 (11)	scaffold_1:34850367-34851349(-) (11)	NA	Q54GI9	"Prohibitin-1, mitochondrial"	AT5G40770.1	prohibitin 3 	LOC_Os02g37000.1	"mitochondrial prohibitin complex protein 1, putative, expressed"	Medtr3g009610.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152038.1.S1_at	A	A1TS	POPTR_0001s35410	POPTR_0001s35410 (11)	scaffold_1:33746134-33746383(+) (11)	NA	Q6FLQ5	Altered inheritance of mitochondria protein 32	AT5G40510.1	Sucrase/ferredoxin-like family protein 	LOC_Os02g49320.1	"sucrase-related, putative, expressed"	Medtr5g103730.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152041.1.S1_at	A	A1TS	POPTR_0014s04230	POPTR_0014s04230 (11)	scaffold_14:3326528-3327081(-) (11)	NA	Q9SUK9	Probable protein phosphatase 2C 55	AT4G16580.1	Protein phosphatase 2C family protein 	LOC_Os03g59470.1	"stage II sporulation protein E, putative, expressed"	Medtr5g019680.1	Stage II sporulation E 	NA	GO:0004721|phosphoprotein phosphatase activity	NA
PtpAffx.152043.1.S1_s_at	A	A1TS	POPTR_0005s21640	POPTR_0005s21640 (11)	scaffold_5:20749695-20749746(+) (11)	NA	P35684	60S ribosomal protein L3	AT1G43170.8	ribosomal protein 1 	LOC_Os12g07010.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.152047.1.S1_s_at	A	A1TS	POPTR_0001s15390	POPTR_0001s15390 (11)	scaffold_1:12211103-12211495(-) (11)	NA	O80337	Ethylene-responsive transcription factor 1A	AT4G17500.1	ethylene responsive element binding factor 1 	LOC_Os02g43790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr8g105160.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.152054.1.S1_s_at	A	A1TS	POPTR_0001s16300	POPTR_0001s16300 (11)	scaffold_1:13100105-13101041(+) (11)	POPTR_0003s07020 (7)	P52894	Alanine aminotransferase 2	AT1G72330.1	alanine aminotransferase 2 	LOC_Os07g42600.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr8g026620.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.152057.1.S1_s_at	A	A1TS	POPTR_0001s10600	POPTR_0001s10600 (11)	scaffold_1:8253107-8254191(-) (11)	NA	Q42191	Mitochondrial inner membrane protein OXA1	AT5G62050.1	homolog of yeast oxidase assembly 1 (OXA1) 	LOC_Os03g02480.1	"inner membrane protein, putative, expressed"	AC233677_14.1	60 kDa inner membrane insertion protein AC233677.2 80748-73714 E EGN_Mt090430 200	GO:0051205|protein insertion into membrane||GO:0061024|membrane organization	NA	GO:0016021|integral to membrane
PtpAffx.152061.1.S1_s_at	A	A2TS	POPTR_0013s05340	POPTR_0013s05340 (11)//POPTR_0019s05160 (11)	scaffold_13:3820897-3821296(-) (11)//scaffold_19:5383604-5384003(+) (11)	NA	O22349	Tubulin alpha-3 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.152074.1.S1_s_at	A	A1TS	POPTR_0006s21090	POPTR_0006s21090 (11)	scaffold_6:20187901-20189105(-) (11)	POPTR_0016s06200 (6)	Q9P6N5	Dihydrosphingosine 1-phosphate phosphatase C823.11	AT3G58490.1	Phosphatidic acid phosphatase (PAP2) family protein 	LOC_Os03g59070.1	"phosphatase, putative, expressed"	AC235488_22.2	"Phosphoesterase, PA-phosphatase related AC235488.1 98822-95448 F EGN_Mt090430 200"	NA	GO:0003824|catalytic activity	GO:0016020|membrane
PtpAffx.152100.1.S1_at	A	A1TS	POPTR_0012s03160	POPTR_0012s03160 (11)	scaffold_12:2514314-2514780(+) (11)	POPTR_0015s00980 (6)	P09379	GTPase-activating protein GYP7	AT3G49350.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os09g35960.1	"TBC domain containing protein, expressed"	Medtr3g123320.1	RabGAP/TBC; DNA-directed DNA polymerase B 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.152112.1.S1_s_at	A	A2TS	POPTR_0001s23610	POPTR_0009s02790 (11)//POPTR_0001s23610 (11)	scaffold_1:22994541-22995350(+) (11)//scaffold_9:3555895-3556705(+) (11)	NA	NA	NA	AT5G13020.1	Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein 	LOC_Os08g23930.2	"ENT domain containing protein, expressed"	Medtr2g071400.1	ENT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152123.1.S1_s_at	A	A1TS	POPTR_0001s02260	POPTR_0001s02260 (11)	scaffold_1:1719786-1720740(+) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G17790.1	SNARE associated Golgi protein family 	LOC_Os02g46660.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152124.1.S1_s_at	A	A1TS	POPTR_0002s19620	POPTR_0002s19620 (11)	scaffold_2:15567162-15567961(+) (11)	NA	Q9S834	"ATP-dependent Clp protease proteolytic subunit 5, chloroplastic"	AT1G02560.1	nuclear encoded CLP protease 5 	LOC_Os03g19510.1	"OsClp4 - Putative Clp protease homologue, expressed"	Medtr1g106610.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.152125.1.S1_at	A	A1TS	POPTR_0011s13820	POPTR_0011s13820 (11)	scaffold_11:16455643-16455682(+) (11)	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.152125.1.S1_s_at	A	A1TS	POPTR_0011s13820	POPTR_0011s13820 (11)	scaffold_11:16455559-16456996(+) (11)	NA	O23787	"Thiazole biosynthetic enzyme, chloroplastic"	AT5G54770.1	"thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) "	LOC_Os07g34570.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr4g110860.1	Thiamine biosynthesis Thi4 protein 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0018130|heterocycle biosynthetic process||GO:0009228|thiamin biosynthetic process||GO:0044271|cellular nitrogen compound biosynthetic process||GO:0019438|aromatic compound biosynthetic process	NA	NA
PtpAffx.152131.1.S1_at	A	A1TS	POPTR_0005s11490	POPTR_0005s11490 (11)	scaffold_5:8300193-8300637(-) (11)	NA	P83332	Thaumatin-like protein 1	AT4G36010.2	Pathogenesis-related thaumatin superfamily protein 	LOC_Os10g05660.1	"thaumatin, putative, expressed"	Medtr5g022250.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152137.1.S1_at	A	A1TS	POPTR_0010s21480	POPTR_0010s21480 (11)	scaffold_10:18732711-18733181(+) (11)	NA	NA	NA	AT2G39570.1	ACT domain-containing protein 	LOC_Os05g02220.3	"ACT domain containing protein, expressed"	Medtr7g025660.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.152142.1.S1_s_at	A	A1TS	POPTR_0018s06220	POPTR_0018s06220 (11)	scaffold_18:5939837-5943718(+) (11)	NA	NA	NA	AT4G13400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g48230.1	expressed protein	Medtr1g083900.1	hypothetical protein 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.152148.1.S1_at	A	A1TS	POPTR_0011s05010	POPTR_0011s05010 (11)	scaffold_11:4973683-4974143(+) (11)	NA	NA	NA	AT5G53750.1	CBS domain-containing protein 	LOC_Os10g35630.1	"cystathionin beta synthase protein, putative, expressed"	Medtr2g014790.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152154.1.S1_s_at	A	A1TS	POPTR_0004s22880	POPTR_0004s22880 (11)	scaffold_4:21718716-21718848(+) (11)	NA	Q8W3M7	Uncharacterized membrane protein At4g06598	AT1G58110.2	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os12g09250.1	"bZIP transcription factor domain containing protein, expressed"	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
PtpAffx.15217.1.S1_at	A	A1TS	POPTR_0009s07750	POPTR_0009s07750 (11)	scaffold_9:7203591-7203948(+) (11)	NA	P92985	Ran-binding protein 1 homolog c	AT5G58590.1	RAN binding protein 1 	LOC_Os05g28290.1	"ranBP1 domain containing protein, expressed"	Medtr6g036210.1	Pleckstrin homology-type 	GO:0046907|intracellular transport	NA	NA
PtpAffx.15217.2.S1_s_at	A	A1TS	POPTR_0001s28550	POPTR_0001s28550 (11)	scaffold_1:27346863-27347346(+) (11)	NA	Q8RWG8	Ran-binding protein 1 homolog b	AT2G30060.1	Pleckstrin homology (PH) domain superfamily protein 	LOC_Os05g28290.1	"ranBP1 domain containing protein, expressed"	Medtr6g036210.1	Pleckstrin homology-type 	GO:0046907|intracellular transport	NA	NA
PtpAffx.152186.1.S1_at	A	A1TS	POPTR_0001s33260	POPTR_0001s33260 (10)	scaffold_1:31454770-31455399(-) (10)	NA	Q52QH4	NAC domain-containing protein 68	AT5G13180.1	NAC domain containing protein 83 	LOC_Os01g60020.1	"NAC domain transcription factor, putative, expressed"	Medtr7g005040.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.152227.1.S1_at	A	A1TS	POPTR_0005s16700	POPTR_0005s16700 (11)	scaffold_5:13743336-13744546(-) (11)	POPTR_0002s09500 (6)	Q66KH2	Endoplasmic reticulum-Golgi intermediate compartment protein 3	AT1G36050.2	Endoplasmic reticulum vesicle transporter protein 	LOC_Os04g38340.1	"endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed"	Medtr5g071750.1	Protein of unknown function DUF1692 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152228.1.S1_at	A	A1TS	POPTR_0004s05240	POPTR_0004s05240 (10)	scaffold_4:3992763-3993326(+) (10)	NA	Q8GYB1	"Nudix hydrolase 15, mitochondrial"	AT1G28960.5	nudix hydrolase homolog 15 	LOC_Os08g28840.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr2g018810.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.152254.1.S1_at	A	A1TS	POPTR_0011s11520	POPTR_0011s11520 (9)	scaffold_11:14267895-14268591(-) (9)	NA	NA	NA	AT2G20562.1	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g11600.1	conserved hypothetical protein	Medtr2g018970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152255.1.S1_s_at	A	A1TS	POPTR_0001s41290	POPTR_0001s41290 (11)	scaffold_1:40906857-40907954(-) (11)	NA	Q99LH1	Nucleolar GTP-binding protein 2	AT1G52980.1	GTP-binding family protein 	LOC_Os03g22890.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.152256.1.S1_at	A	A1TS	POPTR_0007s03990	POPTR_0007s03990 (11)	scaffold_7:2382532-2382859(+) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT3G13310.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	CU013523_26.1	"Heat shock protein DnaJ, N-terminal CU013523.3 104000-104817 E EGN_Mt090430 200"	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.152265.1.A1_at	A	A1TS	POPTR_0014s05140	POPTR_0014s05140 (11)	scaffold_14:3911584-3912974(+) (11)	NA	Q7XJE6	Metacaspase-1	AT1G02170.1	metacaspase 1 	LOC_Os03g27210.1	"LOL3, putative, expressed"	Medtr2g009030.1	"Peptidase C14, caspase catalytic subunit p20 "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.15228.1.S1_a_at	A	A1TS	POPTR_0001s35530	POPTR_0001s35530 (11)	scaffold_1:33893168-33894237(+) (11)	NA	NA	NA	AT3G01640.1	glucuronokinase G 	LOC_Os11g11060.1	"GHMP kinases ATP-binding protein, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
PtpAffx.152284.1.S1_s_at	A	A1TS	POPTR_0001s33780	POPTR_0001s33780 (11)	scaffold_1:31927725-31929889(-) (11)	NA	P92792	Mitochondrial import receptor subunit TOM20	AT1G27390.1	translocase outer membrane 20-2 	LOC_Os01g69250.1	"mitochondrial import receptor subunit TOM20, putative, expressed"	Medtr3g103730.1	Plant specific mitochondrial import receptor subunit TOM20 	GO:0061024|membrane organization||GO:0045040|protein import into mitochondrial outer membrane	GO:0005515|protein binding	GO:0005742|mitochondrial outer membrane translocase complex
PtpAffx.152289.1.S1_at	A	A1TS	POPTR_0006s20960	POPTR_0006s20960 (11)	scaffold_6:20010716-20011560(-) (11)	NA	Q96DM3	Uncharacterized protein C18orf8	AT3G12010.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: Colon cancer-associated Mic1-like (InterPro:IPR009755); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os10g26140.3	"CPuORF15 - conserved peptide uORF-containing transcript, expressed"	Medtr7g112420.1	Colon cancer-associated Mic1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152314.1.A1_at	A	A1TS	POPTR_0015s08630	POPTR_0015s08630 (11)	scaffold_15:9946295-9948122(+) (11)	NA	Q501G6	UPF0497 membrane protein At5g62820	AT5G62820.1	Uncharacterised protein family (UPF0497) 	LOC_Os01g47200.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr3g113600.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
PtpAffx.152317.1.A1_at	A	A1TS	POPTR_0016s13770	POPTR_0016s13770 (9)	scaffold_16:12903109-12903492(+) (9)	NA	P37287	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A	AT3G45100.2	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g16960.1	"glycosyl transferase, group 1 domain containing protein, expressed"	AC235487_3.1	"Glycosyl transferase, group 1; Haem peroxidase, plant/fungal/bacterial AC235487.1 8195-11450 E EGN_Mt090430 200"	GO:0006506|GPI anchor biosynthetic process	NA	NA
PtpAffx.152322.1.A1_at	A	A1TS	POPTR_0006s12230	POPTR_0006s12230 (11)	scaffold_6:9364418-9366009(-) (11)	NA	Q869T9	Probable ethanolamine kinase A	AT2G26830.1	Protein kinase superfamily protein 	LOC_Os09g26700.1	"choline/ethanolamine kinase, putative, expressed"	Medtr3g005000.1	"Choline kinase, N-terminal; Protein kinase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152326.1.S1_s_at	A	A1TS	POPTR_0010s00390	POPTR_0010s00390 (11)	scaffold_10:177885-178634(+) (11)	NA	Q41328	Pto-interacting protein 1	AT1G48210.2	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.2	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.152326.2.S1_at	A	A1TS	POPTR_0010s00390	POPTR_0010s00390 (11)	scaffold_10:176611-177077(+) (11)	NA	Q41328	Pto-interacting protein 1	AT1G48210.2	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.2	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.152326.2.S1_s_at	A	A1TS	POPTR_0010s00390	POPTR_0010s00390 (11)	scaffold_10:177065-177470(+) (11)	NA	Q41328	Pto-interacting protein 1	AT1G48210.2	Protein kinase superfamily protein 	LOC_Os05g04520.1	"protein kinase, putative, expressed"	Medtr1g105960.2	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.152340.1.S1_at	A	A1MS	POPTR_0015s12250	POPTR_0015s12250 (11)	scaffold_15:12593286-12593415(+) (11)	NA	Q38946	Glutamate dehydrogenase 2	AT5G07440.2	glutamate dehydrogenase 2 	LOC_Os04g45970.1	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.152340.1.S1_s_at	A	A1TS	POPTR_0015s12250	POPTR_0015s12250 (11)	scaffold_15:12592793-12593444(+) (11)	NA	Q38946	Glutamate dehydrogenase 2	AT5G07440.2	glutamate dehydrogenase 2 	LOC_Os04g45970.1	"glutamate dehydrogenase protein, putative, expressed"	Medtr5g013610.1	"Calcium-binding EF-hand; Glu/Leu/Phe/Val dehydrogenase, dimerisation region "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.152352.1.S1_at	A	A1TS	POPTR_0005s18890	POPTR_0005s18890 (11)	scaffold_5:17306831-17307319(-) (11)	NA	Q9URY7	Putative formamidase C869.04	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008152|metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	NA
PtpAffx.152352.1.S1_s_at	A	A1TS	POPTR_0005s18890	POPTR_0005s18890 (11)	scaffold_5:17306472-17306950(-) (11)	NA	Q9URY7	Putative formamidase C869.04	AT4G37560.1	Acetamidase/Formamidase family protein 	LOC_Os01g55950.1	"acetamidase, putative, expressed"	NA	NA	GO:0008152|metabolic process	"GO:0016811|""hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"""	NA
PtpAffx.152360.1.S1_at	A	A1TS	POPTR_0009s12060	POPTR_0009s12060 (10)	scaffold_9:9910081-9911698(+) (10)	NA	P52577	Isoflavone reductase homolog P3	AT4G34540.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os02g47610.1	"nmrA-like family domain containing protein, expressed"	Medtr4g095920.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
PtpAffx.152363.1.S1_s_at	A	A1TS	POPTR_0002s24910	POPTR_0002s24910 (11)	scaffold_2:22122069-22123277(-) (11)	NA	NA	NA	AT3G07310.1	Protein of unknown function (DUF760) 	LOC_Os11g26890.2	expressed protein	Medtr8g012790.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152367.1.S1_at	A	A1TS	POPTR_0018s02470	POPTR_0018s02470 (11)	scaffold_18:2270113-2270147(+) (11)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os02g08440.1	"OsWRKY71 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g138240.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.152367.1.S1_s_at	A	A2TS	POPTR_0006s27950	POPTR_0006s27950 (11)//POPTR_0018s02470 (11)	scaffold_18:2269874-2269916(+) (11)//scaffold_6:25817603-25817645(+) (11)	NA	Q9C5T4	WRKY transcription factor 18	AT4G31800.2	WRKY DNA-binding protein 18 	LOC_Os09g25060.1	"OsWRKY76 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr4g022070.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.15237.1.S1_a_at	A	A1TS	POPTR_0001s03980	POPTR_0001s03980 (11)	scaffold_1:3168942-3169295(+) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr4g114440.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.15237.1.S1_x_at	A	A1TS	POPTR_0001s03980	POPTR_0001s03980 (11)	scaffold_1:3168444-3169293(+) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr4g114440.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.15237.2.S1_a_at	A	A1TS	POPTR_0018s11360	POPTR_0018s11360 (11)	scaffold_18:12129882-12130374(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15237.3.S1_at	A	A1TS	POPTR_0003s20870	POPTR_0003s20870 (11)	scaffold_3:19256670-19257385(+) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.15237.5.S1_a_at	A	A2TS	POPTR_0001s03980	POPTR_0001s03980 (11)//POPTR_0003s20870 (11)	scaffold_1:3165798-3166831(+) (11)//scaffold_3:19255938-19257029(+) (11)	NA	P08927	"RuBisCO large subunit-binding protein subunit beta, chloroplastic"	AT3G13470.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g02380.2	"T-complex protein, putative, expressed"	Medtr4g114440.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.152395.1.S1_at	A	A1TS	POPTR_0005s22970	POPTR_0005s22970 (11)	scaffold_5:21819046-21819133(+) (11)	NA	Q9XIN8	F-box protein At2g27310	AT2G27310.1	F-box family protein 	LOC_Os04g33820.1	"OsFBX132 - F-box domain containing protein, expressed"	Medtr1g086490.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152395.1.S1_s_at	A	A1TS	POPTR_0005s22970	POPTR_0005s22970 (11)	scaffold_5:21819204-21819985(+) (11)	NA	Q9XIN8	F-box protein At2g27310	AT2G27310.1	F-box family protein 	LOC_Os04g33820.1	"OsFBX132 - F-box domain containing protein, expressed"	Medtr1g086490.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152400.1.S1_at	A	A1TS	POPTR_0008s23010	POPTR_0008s23010 (9)	scaffold_8:18203334-18206290(-) (10)	NA	NA	NA	AT5G49220.1	Protein of unknown function (DUF789) 	LOC_Os07g14310.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152401.1.S1_at	A	A1TS	POPTR_0003s02330	POPTR_0003s02330 (11)	scaffold_3:2403916-2405546(+) (11)	NA	Q03795	Uncharacterized membrane protein YMR155W	AT1G80530.1	Major facilitator superfamily protein 	LOC_Os06g08110.1	"nodulin, putative, expressed"	Medtr8g122300.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152416.1.S1_at	A	A1TS	POPTR_0019s14520	POPTR_0019s14520 (11)	scaffold_19:15294756-15295243(-) (11)	NA	O60749	Sorting nexin-2	AT5G07120.1	sorting nexin 2B 	LOC_Os05g27920.1	"phox domain-containing protein, putative, expressed"	Medtr5g081470.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.15242.1.S1_at	A	A1TS	POPTR_0005s10770	POPTR_0005s10770 (11)	scaffold_5:7729262-7729554(+) (11)	NA	Q9C5Y0	Phospholipase D delta	AT4G35790.2	phospholipase D delta 	LOC_Os09g37100.1	"phospholipase D, putative, expressed"	Medtr5g023030.1	C2 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.152425.1.S1_at	A	A1TS	POPTR_0016s13300	POPTR_0016s13300 (11)	scaffold_16:12500217-12500586(+) (11)	NA	Q55DY8	Mitoferrin	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152431.1.S1_at	A	A1TS	POPTR_0015s09970	POPTR_0015s09970 (11)	scaffold_15:11035368-11036025(+) (11)	NA	Q98TX3	Programmed cell death protein 4	AT5G63190.2	MA3 domain-containing protein 	LOC_Os08g02690.1	"MA3 domain containing protein, expressed"	Medtr8g110080.1	"Initiation factor eIF-4 gamma, MA3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152437.1.S1_at	A	A1TS	POPTR_0007s00270	POPTR_0007s00270 (11)	scaffold_7:59045-59084(-) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152437.1.S1_s_at	A	A1TS	POPTR_0007s00270	POPTR_0007s00270 (11)	scaffold_7:59005-60126(-) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152437.2.S1_at	A	A1TS	POPTR_0017s00420	POPTR_0017s00420 (11)	scaffold_17:139928-140096(+) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152437.4.S1_s_at	A	A2TS	POPTR_0007s00270	POPTR_0017s00420 (11)//POPTR_0007s00270 (11)	scaffold_17:136172-137166(+) (11)//scaffold_7:62678-63637(-) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152447.1.S1_at	A	A1TS	POPTR_0005s27270	POPTR_0005s27270 (10)	scaffold_5:24987867-24988801(-) (10)	POPTR_0002s01110 (6)	Q5R7B8	Kelch-like protein 20	AT2G30600.4	BTB/POZ domain-containing protein 	LOC_Os05g27880.2	"BBF1 - 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains with a F5/8 type C discoidin domain, expressed"	Medtr5g075660.1	BTB/POZ; Galactose-binding like; ; 	GO:0007155|cell adhesion	GO:0005515|protein binding	NA
PtpAffx.152452.2.A1_a_at	A	A1TS	POPTR_0005s19990	POPTR_0005s19990 (11)	scaffold_5:18996892-18997887(+) (11)	NA	Q9CAP8	"Long chain acyl-CoA synthetase 9, chloroplastic"	AT1G77590.1	long chain acyl-CoA synthetase 9 	LOC_Os12g07110.2	"acyl-CoA synthetase protein, putative, expressed"	Medtr3g100870.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.152452.3.S1_a_at	A	A1TS	POPTR_0001s16370	POPTR_0001s16370 (11)	scaffold_1:13161452-13161889(+) (11)	NA	NA	NA	AT1G53903.1	Protein of unknown function (DUF581) 	LOC_Os09g26370.1	"DUF581 domain containing protein, expressed"	Medtr8g026410.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152453.1.S1_at	A	A2TS	POPTR_0008s04630	POPTR_0008s04630 (11)//POPTR_0010s22220 (10)	scaffold_10:19204390-19206049(-) (10)//scaffold_8:2649581-2652615(+) (11)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os07g49470.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g120700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15246.1.A1_at	A	A1TS	POPTR_0001s35550	POPTR_0001s35550 (11)	scaffold_1:33896804-33897314(-) (11)	NA	NA	NA	AT3G27520.1	unknown protein; Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g38180.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152464.1.S1_at	A	A1TS	POPTR_0002s22810	POPTR_0002s22810 (10)	scaffold_2:19764098-19764742(-) (11)	NA	Q8L7U5	Serine/threonine-protein phosphatase BSL1	AT4G03080.1	BRI1 suppressor 1 (BSU1)-like 1 	LOC_Os05g05240.1	"serine/threonine protein phosphatase, putative, expressed"	Medtr2g104850.1	DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.152465.1.S1_s_at	A	A1TS	POPTR_0019s04990	POPTR_0019s04990 (11)	scaffold_19:5195238-5197708(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g53670.1	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152472.1.S1_at	A	A1TS	POPTR_0005s20770	POPTR_0005s20770 (10)	scaffold_5:19901975-19905605(+) (10)	NA	Q54M22	"2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial"	AT1G21400.1	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein 	LOC_Os12g08260.4	"dehydrogenase E1 component domain containing protein, expressed"	Medtr3g143240.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
PtpAffx.152473.1.S1_at	A	A2TS	POPTR_0007s12480	POPTR_0007s12480 (11)//POPTR_0005s12730 (9)	scaffold_5:9494491-9495001(+) (9)//scaffold_7:12785288-12785795(-) (11)	NA	O23210	Scarecrow-like protein 15	AT4G36710.1	GRAS family transcription factor 	LOC_Os04g46860.1	"scarecrow, putative, expressed"	Medtr8g093620.1	GRAS transcription factor; Sugar transporter superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152488.1.S1_s_at	A	A1TS	POPTR_0012s05430	POPTR_0012s05430 (11)	scaffold_12:5065453-5066530(-) (11)	NA	NA	NA	AT5G23040.1	Protein of unknown function (DUF3353) 	LOC_Os09g21250.1	expressed protein	Medtr8g115580.1	"Heat shock protein DnaJ, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152506.1.S1_at	A	A2TS	POPTR_0025s00350	POPTR_0025s00350 (11)//POPTR_0006s06020 (9)	scaffold_25:115932-117812(+) (11)//scaffold_6:4279935-4281342(+) (9)	NA	Q9Y5A7	NEDD8 ultimate buster 1	AT2G12550.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os04g55150.2	"UBA/TS-N domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152512.1.A1_s_at	A	A1TS	POPTR_0002s16700	POPTR_0002s16700 (11)	scaffold_2:12484361-12487090(-) (11)	NA	Q8VYU6	Golgin candidate 4	AT2G46180.1	golgin candidate 4 	LOC_Os08g29730.1	"intracellular protein transport protein USO1-related, putative, expressed"	Medtr7g088950.1	"GC4, putative "	GO:0016032|viral reproduction	NA	NA
PtpAffx.152513.1.S1_at	A	A1TS	POPTR_0016s09980	POPTR_0016s09980 (11)	scaffold_16:8109320-8109798(-) (11)	NA	NA	NA	AT3G54020.1	Arabidopsis Inositol phosphorylceramide synthase 1 	LOC_Os01g63060.1	"phosphatidic acid phosphatase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152548.1.S1_a_at	A	A1TS	POPTR_0013s06650	POPTR_0013s06650 (11)	scaffold_13:5334171-5335276(-) (11)	NA	Q9LYT3	Protein TRANSPARENT TESTA 12	AT1G33110.1	MATE efflux family protein 	LOC_Os12g03260.1	"MATE efflux family protein, putative, expressed"	Medtr7g104450.1	Multi antimicrobial extrusion protein MatE 	GO:0006855|multidrug transport	GO:0015238|drug transmembrane transporter activity||GO:0015297|antiporter activity	GO:0016020|membrane
PtpAffx.152583.1.S1_at	A	A1TS	POPTR_0005s17920	POPTR_0005s17920 (10)	scaffold_5:15735142-15735475(-) (10)	NA	P48353	Protein HLJ1	AT2G01710.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g27460.3	"heat shock protein DnaJ, putative, expressed"	Medtr5g075120.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding||GO:0003677|DNA binding	NA
PtpAffx.152585.1.S1_at	A	A1TS	POPTR_0017s06430	POPTR_0017s06430 (11)	scaffold_17:4930335-4930370(+) (11)	NA	NA	NA	AT2G43210.2	Ubiquitin-like superfamily protein 	LOC_Os11g18880.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152585.1.S1_s_at	A	A1TS	POPTR_0017s06430	POPTR_0017s06430 (10)	scaffold_17:4929871-4930575(+) (10)	NA	NA	NA	AT2G43210.2	Ubiquitin-like superfamily protein 	LOC_Os11g18880.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152594.1.S1_at	A	A1TS	POPTR_0011s10520	POPTR_0011s10520 (9)	scaffold_11:13011335-13011605(+) (9)	NA	Q9LJF8	F-box/LRR-repeat protein At3g26922	AT3G26922.1	F-box/RNI-like superfamily protein 	LOC_Os10g03870.1	"OsFBX353 - F-box domain containing protein, expressed"	Medtr3g026410.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152594.2.S1_at	A	A1TS	POPTR_0011s10530	POPTR_0011s10530 (11)	scaffold_11:13018642-13019977(+) (11)	NA	Q9LJF8	F-box/LRR-repeat protein At3g26922	AT3G26922.1	F-box/RNI-like superfamily protein 	LOC_Os08g09920.1	"OsFBX277 - F-box domain containing protein, expressed"	Medtr8g018890.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152597.1.S1_at	A	A1TS	POPTR_0008s13830	POPTR_0008s13830 (9)	scaffold_8:9114643-9115967(+) (11)	NA	NA	NA	AT1G14710.2	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g13560.1	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr1g111390.1	2OG-Fe(II) oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152627.1.S1_at	A	A1TS	POPTR_0003s15520	POPTR_0003s15520 (11)	scaffold_3:15272224-15272752(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT5G44680.1	DNA glycosylase superfamily protein 	LOC_Os01g58550.1	"methyladenine glycosylase, putative, expressed"	Medtr2g085500.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
PtpAffx.152634.1.S1_at	A	A1TS	POPTR_0001s06400	POPTR_0001s06400 (10)	scaffold_1:4900525-4900889(-) (10)	NA	Q8GWZ6	Protein SENSITIVITY TO RED LIGHT REDUCED 1	AT5G59560.2	sensitivity to red light reduced protein (SRR1) 	LOC_Os05g02690.1	"sensitivity to red light reduced protein 1, putative, expressed"	Medtr3g020100.1	SRR1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152653.1.S1_s_at	A	A1TS	POPTR_0003s00880	POPTR_0003s00880 (11)	scaffold_3:717436-720905(-) (11)	NA	Q9Y6D9	Mitotic spindle assembly checkpoint protein MAD1	AT5G49880.1	mitotic checkpoint family protein 	LOC_Os01g65580.3	"mitotic checkpoint family protein, putative, expressed"	NA	NA	GO:0016032|viral reproduction	NA	NA
PtpAffx.152663.1.S1_s_at	A	A1TS	POPTR_0014s18930	POPTR_0014s18930 (11)	scaffold_14:16529290-16529933(-) (11)	NA	Q6DCY9	HAUS augmin-like complex subunit 3	AT5G48520.1	unknown protein; Has 609 Blast hits to 593 proteins in 129 species: Archae - 0; Bacteria - 41; Metazoa - 390; Fungi - 40; Plants - 64; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink). 	LOC_Os06g08730.1	expressed protein	Medtr1g046340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152677.1.S1_at	A	A1TS	POPTR_0015s05560	POPTR_0015s05560 (11)	scaffold_15:5903198-5903371(-) (11)	NA	Q91WL8	WW domain-containing oxidoreductase	AT4G27760.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g02470.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g090260.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.152677.1.S1_s_at	A	A1TS	POPTR_0015s05560	POPTR_0015s05560 (11)	scaffold_15:5900819-5903200(-) (11)	NA	Q91WL8	WW domain-containing oxidoreductase	AT4G27760.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g02470.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr6g090260.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.152678.1.A1_at	A	A1TS	POPTR_0004s18640	POPTR_0004s18640 (10)	scaffold_4:18455101-18455547(-) (10)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT4G38430.1	rho guanyl-nucleotide exchange factor 1 	LOC_Os09g37270.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
PtpAffx.152681.2.S1_s_at	A	A1TS	POPTR_0004s16510	POPTR_0004s16510 (11)	scaffold_4:16961059-16962060(-) (11)	NA	P45816	SEC14 cytosolic factor	AT2G21520.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os02g04020.1	expressed protein	Medtr3g162710.2	"Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152683.1.S1_at	A	A1TS	POPTR_0010s04950	POPTR_0010s04950 (11)	scaffold_10:6230377-6230848(+) (11)	NA	Q9LV16	"Probable beta-1,3-galactosyltransferase 19"	AT5G62620.1	Galactosyltransferase family protein 	LOC_Os03g58920.2	"galactosyltransferase family protein, putative, expressed"	Medtr5g038320.1	"Glycosyl transferase, family 31; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.152688.1.S1_at	A	A1TS	POPTR_0016s02270	POPTR_0016s02270 (11)	scaffold_16:1106279-1106729(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152696.1.S1_at	A	A1TS	POPTR_0014s02770	POPTR_0014s02770 (10)	scaffold_14:2306773-2309783(+) (10)	NA	NA	NA	AT5G42930.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g52830.1	"lipase, putative, expressed"	Medtr5g017200.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.152705.1.A1_at	A	A1TS	POPTR_0010s18650	POPTR_0010s18650 (11)	scaffold_10:16831212-16831501(-) (11)	NA	Q42807	"Acyl-[acyl-carrier-protein] desaturase, chloroplastic"	AT3G02630.1	Plant stearoyl-acyl-carrier-protein desaturase family protein 	LOC_Os04g31070.1	"acyl-desaturase, chloroplast precursor, putative, expressed"	Medtr5g024070.1	"Fatty acid desaturase, type 2 subfamily; Ferritin/ribonucleotide reductase-like "	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0045300|acyl-[acyl-carrier-protein] desaturase activity	NA
PtpAffx.152709.1.S1_at	A	A1TS	POPTR_0008s05120	POPTR_0008s05120 (11)	scaffold_8:2973654-2974191(+) (11)	NA	NA	NA	AT5G13660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59830.2); Has 135 Blast hits to 126 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 135; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g51450.1	"PHD-finger domain containing protein, expressed"	Medtr7g025140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152711.1.S1_at	A	A1TS	POPTR_0002s14550	POPTR_0002s14550 (10)	scaffold_2:10814908-10815556(+) (10)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44370.1	"scarecrow, putative, expressed"	Medtr4g029280.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152712.1.S1_at	A	A1TS	POPTR_0002s16840	POPTR_0002s16840 (9)	scaffold_2:12596279-12602181(+) (9)	NA	Q6TDP4	Kelch-like protein 17	AT3G61600.2	POZ/BTB containin G-protein 1 	LOC_Os06g31100.1	"E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed"	AC233577_20.1	BTB/POZ; ; BTB/Kelch-associated; AC233577.5 92564-88267 E EGN_Mt090430 200	NA	GO:0005515|protein binding	NA
PtpAffx.152715.1.S1_at	A	A1TS	POPTR_0005s13910	POPTR_0005s13910 (10)	scaffold_5:10895817-10897519(-) (10)	NA	Q9USQ4	NASP-related protein sim3	AT4G37210.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g03070.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr5g018620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152720.1.S1_at	A	A1TS	POPTR_0004s02870	POPTR_0004s02870 (11)	scaffold_4:1916811-1917532(-) (11)	NA	Q94JL3	Transcription factor bHLH112	AT1G61660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os05g42180.1	"ethylene-responsive protein related, putative"	Medtr2g011150.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.152726.1.S1_at	A	A1TS	POPTR_0012s06370	POPTR_0012s06370 (9)	scaffold_12:6725304-6725882(-) (10)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.2	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.152731.1.S1_at	A	A1TS	POPTR_0010s05750	POPTR_0010s05750 (9)	scaffold_10:7237060-7238301(+) (11)	NA	NA	NA	AT1G67840.1	chloroplast sensor kinase 	LOC_Os12g19530.2	"ATP-binding region, ATPase-like domain-containing protein, putative, expressed"	NA	NA	NA	GO:0005524|ATP binding	NA
PtpAffx.152740.1.S1_at	A	A1TS	POPTR_0013s04210	POPTR_0013s04210 (11)	scaffold_13:2804049-2804500(-) (11)	NA	NA	NA	AT3G04550.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). "	LOC_Os10g30870.1	expressed protein	Medtr1g093440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152741.1.S1_at	A	A1TS	POPTR_0004s21620	POPTR_0004s21620 (10)	scaffold_4:20658312-20659538(-) (10)	NA	Q9ULD4	Bromodomain and PHD finger-containing protein 3	AT1G20670.1	DNA-binding bromodomain-containing protein 	LOC_Os09g37760.1	"bromodomain domain containing protein, expressed"	Medtr3g069040.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15275.1.S1_at	A	A2TS	POPTR_0003s22240	POPTR_1112s00210 (11)//POPTR_0003s22240 (11)	scaffold_1112:4122-4408(+) (11)//scaffold_3:20089914-20090200(-) (11)	NA	Q76MV0	Histone H3.2	AT5G65360.1	Histone superfamily protein 	LOC_Os04g34240.1	"histone H3, putative, expressed"	Medtr5g029710.1	Histone H3; Histone-fold 	NA	GO:0003677|DNA binding	NA
PtpAffx.152753.1.S1_at	A	A1TS	POPTR_0005s22860	POPTR_0005s22860 (11)	scaffold_5:21745371-21746608(+) (11)	NA	Q94A68	"Uncharacterized oxidoreductase At1g06690, chloroplastic"	AT1G06690.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os07g05000.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr3g123260.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.152756.1.S1_at	A	A1TS	POPTR_0018s12110	POPTR_0018s12110 (9)	scaffold_18:12686638-12688712(-) (9)	NA	NA	NA	AT5G35180.2	Protein of unknown function (DUF1336) 	LOC_Os08g34060.2	"DUF1336 domain containing protein, expressed"	Medtr1g120740.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152765.1.S1_at	A	A1TS	POPTR_0002s12460	POPTR_0002s12460 (10)	scaffold_2:9245115-9245156(+) (10)	NA	Q9C626	F-box protein At1g47056	AT1G47056.1	VIER F-box proteine 1 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152776.1.S1_at	A	A1TS	POPTR_0008s13450	POPTR_0008s13450 (11)	scaffold_8:8852491-8854277(+) (11)	NA	NA	NA	AT1G68060.1	microtubule-associated proteins 70-1 	LOC_Os02g50320.1	"ATMAP70 protein, putative, expressed"	Medtr4g157060.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152785.1.S1_at	A	A1TS	POPTR_0008s16190	POPTR_0008s16190 (11)	scaffold_8:10816243-10816612(-) (11)	POPTR_0008s16230 (6)	NA	NA	AT1G04280.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g43300.1	expressed protein	Medtr1g089770.1	"H1flk, putative "	GO:0001906|cell killing	GO:0005524|ATP binding	NA
PtpAffx.152787.1.S1_s_at	A	A1TS	POPTR_0010s05550	POPTR_0010s05550 (11)	scaffold_10:6987875-6988723(+) (11)	NA	Q94C27	F-box protein At1g70590	AT1G70590.1	F-box family protein 	LOC_Os04g40030.1	"OsFBO17 - F-box and other domain containing protein, expressed"	Medtr5g034530.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152834.1.A1_at	A	A1TS	POPTR_0006s05290	POPTR_0006s05290 (11)	scaffold_6:3744229-3744590(+) (11)	NA	NA	NA	AT3G57570.1	ARM repeat superfamily protein 	NA	NA	Medtr7g110840.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152850.1.A1_a_at	A	A1TS	POPTR_0005s07070	POPTR_0005s07070 (11)	scaffold_5:4734084-4734815(-) (11)	NA	Q0IU52	Aspartic proteinase Asp1	AT4G33490.2	Eukaryotic aspartyl protease family protein 	LOC_Os12g07780.2	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr3g142620.1	"Peptidase aspartic, active site; Immunoglobulin/major histocompatibility complex "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152862.1.A1_s_at	A	A1TS	POPTR_0001s01460	POPTR_0001s01460 (11)	scaffold_1:1093877-1094398(+) (11)	NA	P42735	Cadmium-induced protein AS8	AT4G19070.1	Putative membrane lipoprotein 	LOC_Os07g05040.1	"cadmium-induced protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152869.1.A1_at	A	A1TS	POPTR_0009s02210	POPTR_0009s02210 (10)	scaffold_9:2928753-2929213(-) (10)	NA	P53145	Large subunit GTPase 1	AT1G08410.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g42370.1	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g067030.1	Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.15290.1.S1_s_at	A	A1TS	POPTR_0007s09930	POPTR_0007s09930 (11)	scaffold_7:9489849-9490843(-) (11)	NA	NA	NA	AT2G23060.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g55530.1	"HLS, putative, expressed"	Medtr5g015900.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.152909.1.A1_at	A	A1TS	POPTR_0008s04700	POPTR_0008s04700 (11)	scaffold_8:2702654-2702974(+) (11)	NA	Q7SXR3	Macrophage erythroblast attacher	AT3G55070.1	LisH/CRA/RING-U-box domains-containing protein 	LOC_Os05g06760.1	"macrophage erythroblast attacher, putative, expressed"	Medtr1g146370.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.152927.1.A1_at	A	A1TS	POPTR_0001s18420	POPTR_0001s18420 (11)	scaffold_1:15479980-15480235(-) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009360.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.152938.1.A1_at	A	A1TS	POPTR_0008s02930	POPTR_0008s02930 (11)	scaffold_8:1515482-1517590(+) (11)	NA	NA	NA	AT3G52180.2	dual specificity protein phosphatase (DsPTP1) family protein 	LOC_Os03g01750.7	"dual specificity protein phosphatase, putative, expressed"	NA	NA	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
PtpAffx.152942.1.A1_at	A	A1TS	POPTR_0008s11930	POPTR_0008s11930 (9)	scaffold_8:7687253-7687481(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1530.1.S1_at	A	A1TS	POPTR_0010s14870	POPTR_0010s14870 (11)	scaffold_10:14349862-14350764(+) (11)	NA	Q96JB2	Conserved oligomeric Golgi complex subunit 3	AT1G73430.2	sec34-like family protein 	LOC_Os08g34970.1	"conserved oligomeric Golgi complex component 3, putative, expressed"	Medtr8g133280.1	Sec34-like protein 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane||GO:0005801|cis-Golgi network
PtpAffx.153010.1.A1_a_at	A	A2TS	POPTR_0006s13940	POPTR_0018s07390 (11)//POPTR_0006s13940 (11)	scaffold_18:7643714-7643790(-) (11)//scaffold_6:11175098-11175174(-) (11)	NA	P33081	Auxin-induced protein 15A	AT5G20810.1	SAUR-like auxin-responsive protein family  	LOC_Os09g26610.1	"OsSAUR38 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g133050.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153010.2.A1_at	A	A1TS	POPTR_0006s13940	POPTR_0006s13940 (11)	scaffold_6:11174626-11175107(-) (11)	NA	P33081	Auxin-induced protein 15A	AT5G20810.1	SAUR-like auxin-responsive protein family  	LOC_Os09g26610.1	"OsSAUR38 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g133050.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15302.1.S1_s_at	A	A1TS	POPTR_0014s11790	POPTR_0014s11790 (11)	scaffold_14:8755454-8756137(+) (11)	NA	P38661	Probable protein disulfide-isomerase A6	AT2G47470.1	thioredoxin family protein 	LOC_Os05g06430.2	"OsPDIL2-1  protein disulfide isomerase PDIL2-1, expressed"	Medtr1g107440.1	"Thioredoxin-related; Thioredoxin domain 2; Endoplasmic reticulum ERp29, C-terminal; "	GO:0045454|cell redox homeostasis	NA	GO:0005783|endoplasmic reticulum
PtpAffx.15302.2.S1_s_at	A	A2TS	POPTR_0002s19940	POPTR_0002s19940 (11)//POPTR_0014s11790 (11)	scaffold_14:8752654-8753906(+) (11)//scaffold_2:15877279-15878366(+) (11)	NA	P38661	Probable protein disulfide-isomerase A6	AT2G47470.1	thioredoxin family protein 	LOC_Os01g23740.1	"OsPDIL2-2  protein disulfide isomerase PDIL2-2, expressed"	Medtr1g107440.1	"Thioredoxin-related; Thioredoxin domain 2; Endoplasmic reticulum ERp29, C-terminal; "	GO:0045454|cell redox homeostasis	NA	GO:0005783|endoplasmic reticulum
PtpAffx.153051.1.A1_at	A	A1MS	POPTR_0008s15880	POPTR_0008s15880 (11)	scaffold_8:10602878-10603398(+) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
PtpAffx.153084.1.A1_at	A	A1TS	POPTR_0019s14840	POPTR_0019s14840 (10)	scaffold_19:15500108-15500721(-) (10)	NA	NA	NA	AT5G58375.1	Methyltransferase-related protein 	LOC_Os11g02200.1	expressed protein	Medtr5g082910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153087.1.A1_at	A	A1TS	POPTR_0007s06900	POPTR_0007s06900 (11)	scaffold_7:5215408-5217487(+) (11)	NA	B9H5L9	"Lipoyl synthase, mitochondrial"	AT2G20860.1	lipoic acid synthase 1 	LOC_Os04g38330.1	"radical SAM enzyme, putative, expressed"	NA	NA	NA	GO:0003824|catalytic activity||GO:0051536|iron-sulfur cluster binding	NA
PtpAffx.153100.1.A1_at	A	A1MS	POPTR_0010s00460	POPTR_0010s00460 (11)	scaffold_10:232782-232970(-) (11)	NA	NA	NA	AT1G09520.1	"LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr8g133790.1	"Zinc finger, PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153100.1.A1_s_at	A	A1TS	POPTR_0010s00460	POPTR_0010s00460 (11)	scaffold_10:232957-233325(-) (11)	NA	NA	NA	AT1G09520.1	"LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr8g133790.1	"Zinc finger, PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153102.1.A1_at	A	A1TS	POPTR_0016s08370	POPTR_0016s08370 (11)	scaffold_16:6176756-6177602(+) (11)	NA	Q9LHJ9	Probable protein phosphatase 2C 38	AT3G12620.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	AC235022_10.1	Protein phosphatase 2C-like; AC235022.1 67966-70494 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153111.1.A1_at	A	A1MA	POPTR_0012s00900	POPTR_0012s00900 (10)	scaffold_12:583914-584382(+) (10)	NA	Q54NM9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3	AT1G34130.1	staurosporin and temperature sensitive 3-like b 	LOC_Os04g57890.1	"oligosaccharyl transferase, putative, expressed"	Medtr6g089790.1	"Oligosaccharyl transferase, STT3 subunit "	GO:0006486|protein amino acid glycosylation	GO:0004576|oligosaccharyl transferase activity	GO:0016020|membrane
PtpAffx.153121.1.A1_at	A	A1TS	POPTR_0005s20100	POPTR_0005s20100 (11)	scaffold_5:19101888-19102376(-) (11)	NA	Q9XI00	F-box protein 7	AT1G21760.1	F-box protein 7 	LOC_Os04g35190.1	"OsFBX133 - F-box domain containing protein, expressed"	Medtr3g100510.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153123.1.S1_at	A	A1TS	POPTR_0003s10390	POPTR_0003s10390 (10)	scaffold_3:11388207-11389019(-) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr5g089630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153132.1.A1_at	A	A1MS	POPTR_0009s00950	POPTR_0009s00950 (9)	scaffold_9:1093080-1093559(+) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT3G44880.1	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain 	LOC_Os03g05310.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g076120.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
PtpAffx.15315.1.S1_at	A	A1TS	POPTR_0012s09210	POPTR_0012s09210 (11)	scaffold_12:10259871-10260711(-) (11)	NA	Q42539	Protein-L-isoaspartate O-methyltransferase	AT3G48330.2	protein-l-isoaspartate methyltransferase 1 	LOC_Os04g40540.3	"protein-L-isoaspartate O-methyltransferase, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0004719|protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	NA
PtpAffx.153171.1.A1_a_at	A	A1TS	POPTR_0010s24710	POPTR_0010s24710 (11)	scaffold_10:20766760-20767041(+) (11)	NA	Q869R9	Myb-like protein J	AT5G04760.1	Duplicated homeodomain-like superfamily protein 	LOC_Os04g58020.1	"MYB_Al protein, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153194.1.A1_at	A	A1TS	POPTR_0010s20220	POPTR_0010s20220 (10)	scaffold_10:17902618-17902871(+) (10)	NA	Q9FDW1	Transcription factor MYB44	AT3G55730.1	myb domain protein 109 	LOC_Os01g63160.1	"MYB family transcription factor, putative, expressed"	Medtr3g148280.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153202.1.A1_s_at	A	A1TS	POPTR_0015s04430	POPTR_0015s04430 (11)	scaffold_15:4580690-4580853(+) (11)	NA	NA	NA	AT1G18180.1	Protein of unknown function (DUF1295) 	LOC_Os03g50070.1	"DUF1295 domain containing protein, putative, expressed"	Medtr4g155170.1	Protein of unknown function DUF1295 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153202.2.A1_at	A	A1MS	POPTR_0015s04430	POPTR_0015s04430 (11)	scaffold_15:4579650-4580116(+) (11)	NA	NA	NA	AT1G18180.1	Protein of unknown function (DUF1295) 	LOC_Os03g50070.1	"DUF1295 domain containing protein, putative, expressed"	Medtr4g155170.1	Protein of unknown function DUF1295 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153211.1.A1_at	A	A1TS	POPTR_0005s24450	POPTR_0005s24450 (11)	scaffold_5:22987755-22988141(-) (11)	NA	Q9LTC5	Ethylene-responsive transcription factor ERF098	AT3G23230.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g18650.1	AP2 domain containing protein	Medtr4g072660.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.153212.1.A1_at	A	A1TS	POPTR_0011s06820	POPTR_0011s06820 (11)	scaffold_11:7495914-7496465(+) (11)	NA	O49403	Heat stress transcription factor A-4a	AT4G18880.1	heat shock transcription factor  A4A 	LOC_Os01g54550.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g135910.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.153229.1.A1_at	A	A1TS	POPTR_0009s05010	POPTR_0009s05010 (11)	scaffold_9:5213862-5214016(-) (11)	NA	Q56Y11	Dehydrodolichyl diphosphate synthase 2	AT5G58770.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os01g63830.1	"dehydrodolichyl diphosphate synthase, putative, expressed"	Medtr5g078680.1	Di-trans-poly-cis-decaprenylcistransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
PtpAffx.153237.1.A1_at	A	A1TS	POPTR_0009s03750	POPTR_0009s03750 (11)	scaffold_9:4357805-4362081(-) (11)	NA	Q8GYC7	"PGR5-like protein 1B, chloroplastic"	AT5G59400.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g02010.1	expressed protein	Medtr2g116720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153237.2.A1_at	A	A1TS	POPTR_0001s24810	POPTR_0001s24810 (11)	scaffold_1:24062984-24063171(+) (11)	NA	Q8GYC7	"PGR5-like protein 1B, chloroplastic"	AT5G59400.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g02010.1	expressed protein	Medtr2g116720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153237.2.A1_s_at	A	A1TS	POPTR_0001s24810	POPTR_0001s24810 (11)	scaffold_1:24062254-24063195(+) (11)	NA	Q8GYC7	"PGR5-like protein 1B, chloroplastic"	AT5G59400.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g02010.1	expressed protein	Medtr2g116720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153242.1.S1_s_at	A	A1TS	POPTR_0019s08540	POPTR_0019s08540 (11)	scaffold_19:10048606-10050057(-) (11)	NA	P35017	"Superoxide dismutase [Mn], mitochondrial"	AT3G10920.1	manganese superoxide dismutase 1 	LOC_Os05g25850.1	"superoxide dismutase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
PtpAffx.15326.1.A1_at	A	A1TS	POPTR_0018s09500	POPTR_0018s09500 (10)	scaffold_18:10381727-10382158(+) (10)	NA	O34948	Uncharacterized oxidoreductase ykwC	AT4G29120.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os01g53910.1	"dehydrogenase, putative, expressed"	Medtr4g159920.1	"6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal-like; "	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
PtpAffx.15327.3.S1_at	A	A1TS	POPTR_0010s06970	POPTR_0010s06970 (11)	scaffold_10:8203146-8203249(-) (11)//scaffold_10:8229154-8229257(-) (10)	NA	O80763	Probable nucleoredoxin 1	AT1G60420.1	DC1 domain-containing protein 	LOC_Os03g29190.2	"PDI, putative, expressed"	Medtr3g157120.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin fold "	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.153283.1.A1_at	A	A1TS	POPTR_0008s20660	POPTR_0008s20660 (10)	scaffold_8:14565816-14566043(+) (10)	NA	Q9C0Y8	UPF0613 protein PB24D3.06c	AT5G19050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g11060.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153292.1.A1_at	A	A1TS	POPTR_0005s24290	POPTR_0005s24290 (11)	scaffold_5:22891918-22892468(+) (11)	NA	NA	NA	AT4G17810.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g14130.1	ZOS5-05 - C2H2 zinc finger protein	Medtr1g090030.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.153303.1.A1_at	A	A1TS	POPTR_0011s04460	POPTR_0011s04460 (10)	scaffold_11:4436730-4437064(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153313.1.A1_at	A	A2TS	POPTR_0016s14440	POPTR_0016s14440 (11)//POPTR_0016s14460 (9)	scaffold_16:13649095-13649481(+) (11)//scaffold_16:13661211-13661597(+) (11)	NA	P24465	Cytochrome P450 71A1	AT3G48320.1	"cytochrome P450, family 71, subfamily A, polypeptide 21 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.153313.2.A1_a_at	A	A2TS	POPTR_0016s14440	POPTR_0016s14440 (11)//POPTR_0016s14460 (9)	scaffold_16:13648636-13649517(+) (11)//scaffold_16:13660755-13661633(+) (11)	NA	P24465	Cytochrome P450 71A1	AT3G48320.1	"cytochrome P450, family 71, subfamily A, polypeptide 21 "	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr3g115230.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.153340.1.A1_at	A	A1TS	POPTR_0008s16060	POPTR_0008s16060 (10)	scaffold_8:10726871-10727188(+) (10)	NA	Q75LD5	Probable ion channel CASTOR	AT5G43745.1	Protein of unknown function (DUF1012) 	LOC_Os03g06720.1	expressed protein	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153346.1.A1_at	A	A1TS	POPTR_0005s15650	POPTR_0005s15650 (11)	scaffold_5:12258750-12259150(+) (11)	NA	NA	NA	AT5G16110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02555.1); Has 133 Blast hits to 133 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr6g020380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153358.1.A1_at	A	A1MS	POPTR_0004s09230	POPTR_0004s09230 (10)	scaffold_4:7748229-7748384(-) (10)	POPTR_0229s00230 (7)//POPTR_0004s09380 (7)	NA	NA	AT1G64820.1	MATE efflux family protein 	LOC_Os01g31980.2	"MATE efflux family protein, putative, expressed"	Medtr7g094030.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153358.1.A1_s_at	A	A3TS	POPTR_0004s09230	POPTR_0004s09230 (11)//POPTR_0229s00230 (10)//POPTR_0004s09380 (10)	scaffold_229:9595-9782(+) (10)//scaffold_4:7748370-7748557(-) (11)//scaffold_4:7907982-7908169(+) (10)	NA	NA	NA	AT1G64820.1	MATE efflux family protein 	LOC_Os01g31980.2	"MATE efflux family protein, putative, expressed"	Medtr7g094030.1	Multi antimicrobial extrusion protein MatE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153364.1.A1_at	A	A1TS	POPTR_0004s06480	POPTR_0004s06480 (10)	scaffold_4:5249639-5250022(+) (10)	NA	Q8RXZ4	Probable protein phosphatase 2C 18	AT1G79630.1	Protein phosphatase 2C family protein 	LOC_Os08g39100.1	"protein phosphatase 2C, putative, expressed"	Medtr7g089830.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153374.1.A1_at	A	A1TS	POPTR_0004s08180	POPTR_0004s08180 (11)	scaffold_4:6693053-6693430(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153377.1.A1_at	A	A1TS	POPTR_0001s30490	POPTR_0001s30490 (11)	scaffold_1:28984555-28984660(+) (11)	NA	Q92466	DNA damage-binding protein 2	AT4G34280.1	transducin family protein / WD-40 repeat family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153378.1.A1_at	A	A1TS	POPTR_0005s22470	POPTR_0005s22470 (11)	scaffold_5:21378478-21380780(-) (11)	NA	NA	NA	AT1G06510.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 376 Blast hits to 369 proteins in 152 species: Archae - 5; Bacteria - 113; Metazoa - 105; Fungi - 46; Plants - 27; Viruses - 2; Other Eukaryotes - 78 (source: NCBI BLink). 	LOC_Os01g50120.2	expressed protein	Medtr5g098730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153379.1.A1_at	A	A1TS	POPTR_0006s26080	POPTR_0006s26080 (11)	scaffold_6:24375290-24377219(+) (11)	NA	P51568	Serine/threonine-protein kinase AFC3	AT4G32660.1	Protein kinase superfamily protein 	LOC_Os01g40840.1	"serine/threonine-protein kinase AFC3, putative, expressed"	Medtr3g132770.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.153383.1.A1_at	A	A1MS	POPTR_0001s16710	POPTR_0001s16710 (11)	scaffold_1:13498011-13498544(+) (11)	NA	NA	NA	AT1G72510.2	Protein of unknown function (DUF1677) 	LOC_Os06g09900.1	expressed protein	Medtr8g025320.1	"Protein of unknown function DUF1677, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153386.1.A1_a_at	A	A1TS	POPTR_0002s26380	POPTR_0002s26380 (11)	scaffold_2:23366351-23367657(+) (11)	NA	Q559T8	Probable serine/threonine-protein kinase DDB_G0272282	AT1G45160.2	Protein kinase superfamily protein 	LOC_Os03g50390.1	"AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr5g077630.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.153388.1.A1_at	A	A1TS	POPTR_0001s27330	POPTR_0001s27330 (11)	scaffold_1:26234214-26235694(+) (11)	NA	NA	NA	AT1G07985.1	Expressed protein 	NA	NA	AC235669_8.1	"T6D22.8, putative AC235669.1 36263-36878 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153413.1.A1_at	A	A1TS	POPTR_0001s47440	POPTR_0001s47440 (11)	scaffold_1:47632808-47633396(-) (11)	NA	Q5SSW2	Proteasome activator complex subunit 4	AT3G13330.1	proteasome activating protein 200 	LOC_Os06g19730.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153422.1.A1_at	A	A1TS	POPTR_0015s15440	POPTR_0015s15440 (10)	scaffold_15:14716121-14716670(-) (10)	NA	NA	NA	AT2G32210.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 214 Blast hits to 214 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153434.1.A1_s_at	A	A1TS	POPTR_0014s16670	POPTR_0014s16670 (11)	scaffold_14:12771099-12771390(+) (11)	NA	Q8S4Y1	"Acetyl-CoA acetyltransferase, cytosolic 1"	AT5G48230.2	acetoacetyl-CoA thiolase 2 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	Medtr5g106000.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153438.1.A1_at	A	A3TS	POPTR_0013s00360	POPTR_0353s00210 (11)//POPTR_0013s00360 (11)//POPTR_0353s00200 (9)	scaffold_13:132572-143747(-) (11)//scaffold_13:135780-143939(-) (9)//scaffold_353:206-677(+) (11)//scaffold_353:8557-9028(+) (11)	NA	NA	NA	AT3G05858.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153440.1.A1_s_at	A	A1TS	POPTR_0013s08030	POPTR_0013s08030 (11)	scaffold_13:6921838-6935928(-) (11)	NA	Q94AI7	Protein TOPLESS	AT1G15750.4	Transducin family protein / WD-40 repeat family protein 	LOC_Os08g06480.1	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr2g126840.2	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153441.1.A1_at	A	A1TS	POPTR_0006s27160	POPTR_0006s27160 (11)	scaffold_6:25154226-25155487(+) (11)	NA	NA	NA	AT5G25340.1	Ubiquitin-like superfamily protein 	LOC_Os02g09530.1	expressed protein	Medtr1g014010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153444.1.A1_at	A	A1TA	POPTR_0008s15080	POPTR_0008s15080 (11)	scaffold_8:10070922-10071140(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153445.1.A1_at	A	A1TS	POPTR_0016s03870	POPTR_0016s03870 (11)	scaffold_16:2159962-2160434(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os11g34090.1	"plant protein of unknown function domain containing protein, expressed"	Medtr7g067480.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153446.1.A1_at	A	A1TS	POPTR_0008s16810	POPTR_0008s16810 (11)	scaffold_8:11316796-11317287(+) (11)	NA	NA	NA	AT5G43310.2	COP1-interacting protein-related 	LOC_Os03g64320.1	expressed protein	Medtr2g093240.1	"COP1-interacting protein-related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153449.1.A1_at	A	A1TS	POPTR_0016s03170	POPTR_0016s03170 (11)	scaffold_16:1616762-1616943(-) (11)	NA	O22207	Ubiquitin carboxyl-terminal hydrolase 5	AT2G40930.1	ubiquitin-specific protease 5 	LOC_Os10g07270.1	"ubiquitin carboxyl-terminal hydrolase 5, putative, expressed"	Medtr7g105660.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
PtpAffx.153471.1.A1_at	A	A1TS	POPTR_0008s06810	POPTR_0008s06810 (11)	scaffold_8:4081856-4082291(+) (11)	NA	Q0UPV4	DNA replication complex GINS protein PSF3	AT3G55490.1	GINS complex protein 	LOC_Os08g17294.2	"PSF3 - Putative GINS complex subunit, expressed"	Medtr3g093620.1	"GINS complex, Psf3 component "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153471.2.A1_a_at	A	A2TS	POPTR_0008s06810	POPTR_0010s19650 (11)//POPTR_0008s06810 (11)	scaffold_10:17513450-17515049(-) (11)//scaffold_8:4080293-4081842(+) (11)	NA	Q0UPV4	DNA replication complex GINS protein PSF3	AT3G55490.1	GINS complex protein 	LOC_Os08g17294.2	"PSF3 - Putative GINS complex subunit, expressed"	Medtr3g093620.1	"GINS complex, Psf3 component "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153471.2.A1_at	A	A1TS	POPTR_0010s19650	POPTR_0010s19650 (11)	scaffold_10:17513243-17515081(-) (11)	NA	Q0UPV4	DNA replication complex GINS protein PSF3	AT3G55490.1	GINS complex protein 	LOC_Os08g17294.2	"PSF3 - Putative GINS complex subunit, expressed"	Medtr3g093620.1	"GINS complex, Psf3 component "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153484.1.A1_at	A	A1MA	POPTR_0417s00200	POPTR_0417s00200 (10)	scaffold_186:90-258(-) (11)//scaffold_186:9344-9512(-) (11)//scaffold_417:4506-4674(+) (11)//scaffold_417:12468-12636(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15351.1.S1_a_at	A	A1TS	POPTR_0001s18620	POPTR_0001s18620 (11)	scaffold_1:15675640-15675860(+) (11)	NA	Q3URE1	"Acyl-CoA synthetase family member 3, mitochondrial"	AT3G16170.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g55590.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084070.1	AMP-dependent synthetase and ligase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15351.1.S1_at	A	A1TS	POPTR_0001s18620	POPTR_0001s18620 (11)	scaffold_1:15674787-15676049(+) (11)	NA	Q3URE1	"Acyl-CoA synthetase family member 3, mitochondrial"	AT3G16170.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g55590.1	"AMP-binding enzyme, putative, expressed"	Medtr5g084070.1	AMP-dependent synthetase and ligase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153510.1.A1_at	A	A1TS	POPTR_0001s36080	POPTR_0001s36080 (11)	scaffold_1:34554625-34554840(+) (11)	NA	NA	NA	AT5G40690.1	"CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os05g23130.1	expressed protein	Medtr4g079730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153510.1.A1_s_at	A	A1TS	POPTR_0001s36080	POPTR_0001s36080 (11)	scaffold_1:34554417-34554909(+) (11)	NA	NA	NA	AT5G40690.1	"CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os05g23130.1	expressed protein	Medtr4g079730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153513.1.A1_at	A	A1TS	POPTR_0013s05630	POPTR_0013s05630 (11)	scaffold_13:4043161-4043290(-) (11)	NA	O75175	CCR4-NOT transcription complex subunit 3	AT5G18230.1	transcription regulator NOT2/NOT3/NOT5 family protein 	LOC_Os03g44900.1	"CCR4-NOT transcription factor, putative, expressed"	Medtr7g100260.1	"Not CCR4-Not complex component, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.153514.1.A1_at	A	A1MS	POPTR_0017s08450	POPTR_0017s08450 (11)	scaffold_17:7001593-7002090(-) (11)	NA	Q9ZTS1	Probable methionyl-tRNA synthetase	AT4G13780.1	"methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative "	LOC_Os06g31210.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding||GO:0000049|tRNA binding	GO:0005737|cytoplasm
PtpAffx.153529.1.A1_at	A	A1TS	POPTR_0005s17720	POPTR_0005s17720 (11)	scaffold_5:15416913-15417329(-) (11)	NA	Q4KYM5	Cyclin-D4-2	AT5G65420.1	CYCLIN D4;1 	LOC_Os08g37390.1	"cyclin, putative, expressed"	Medtr3g148920.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.15353.1.S1_at	A	A1TS	POPTR_0011s17210	POPTR_0011s17210 (11)	scaffold_11:18789491-18789952(-) (11)	NA	NA	NA	AT5G56250.1	hapless 8 	LOC_Os04g39560.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153535.1.A1_at	A	A1MS	POPTR_0010s08660	POPTR_0010s08660 (10)	scaffold_10:9550267-9550814(+) (10)	NA	Q53389	N-carbamoyl-L-amino acid hydrolase	AT5G43600.1	ureidoglycolate amidohydrolase 	LOC_Os12g40550.1	"peptidase, putative, expressed"	Medtr1g089890.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008237|metallopeptidase activity	NA
PtpAffx.153544.1.A1_at	A	A1TS	POPTR_0009s08610	POPTR_0009s08610 (10)	scaffold_9:7826743-7827402(+) (10)	NA	NA	NA	AT2G14530.1	TRICHOME BIREFRINGENCE-LIKE 13 	LOC_Os07g31550.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr4g121840.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153545.1.A1_at	A	A1TS	POPTR_0006s10670	POPTR_0006s10670 (10)	scaffold_6:8008316-8010244(-) (10)	NA	Q5LYJ2	D-alanine--D-alanine ligase	AT3G08840.2	D-alanine--D-alanine ligase family 	LOC_Os07g49110.1	"D-alanine--D-alanine ligase family, putative, expressed"	Medtr7g077430.1	"D-alanine--D-alanine ligase, N-terminal; ATP-grasp fold; "	GO:0009252|peptidoglycan biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0010382|cellular cell wall macromolecule metabolic process	GO:0008716|D-alanine-D-alanine ligase activity	GO:0005618|cell wall
PtpAffx.153553.1.A1_at	A	A1TS	POPTR_0015s05590	POPTR_0015s05590 (11)	scaffold_15:5936518-5936720(+) (11)	NA	Q9FGY4	F-box protein At5g49610	AT5G49610.1	F-box family protein 	LOC_Os07g35050.1	"OsFBX237 - F-box domain containing protein, expressed"	Medtr2g037610.2	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153576.1.A1_at	A	A1TS	POPTR_0019s13650	POPTR_0019s13650 (11)	scaffold_19:14521941-14522416(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50150.1	Plant protein of unknown function (DUF247) 	LOC_Os04g42650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g016500.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153586.1.A1_at	A	A1TS	POPTR_0014s12790	POPTR_0014s12790 (11)	scaffold_14:9423590-9423718(-) (11)	NA	Q110D7	Peptide chain release factor 1	AT3G62910.1	Peptide chain release factor 1 	LOC_Os11g43600.1	"peptide chain release factor protein, putative, expressed"	Medtr7g130010.1	Peptide chain release factor 1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
PtpAffx.153603.1.A1_at	A	A1TS	POPTR_0012s14940	POPTR_0012s14940 (11)	scaffold_12:14647643-14648088(+) (11)	NA	Q2MY58	Patatin group A-3	AT3G54950.1	patatin-like protein 6 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g121000.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.153619.1.A1_at	A	A1TS	POPTR_0006s22570	POPTR_0006s22570 (9)	scaffold_6:21551385-21551508(+) (9)	NA	Q9AST6	Vacuolar protein sorting-associated protein 55 homolog	AT3G11530.2	Vacuolar protein sorting 55 (VPS55) family protein 	LOC_Os01g73570.2	"vacuolar protein sorting 55 family protein, putative, expressed"	Medtr5g014160.1	Vacuolar protein sorting 55 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153625.1.A1_s_at	A	A1TS	POPTR_0001s46570	POPTR_0001s46570 (11)	scaffold_1:46941843-46941991(+) (11)	NA	Q94C59	Patellin-4	AT1G30690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os06g45990.2	"patellin-5, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153627.1.A1_s_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22924409-22924456(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153629.1.A1_at	A	A1TS	POPTR_0008s04240	POPTR_0008s04240 (11)	scaffold_8:2374753-2375225(-) (11)	NA	NA	NA	AT2G35790.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724); Has 116 Blast hits to 116 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os03g63680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153669.1.A1_s_at	A	A1TS	POPTR_0019s15260	POPTR_0019s15260 (11)	scaffold_19:15809523-15810998(-) (11)	NA	P46269	Cytochrome b-c1 complex subunit 8	AT5G05370.1	"Cytochrome b-c1 complex, subunit 8 protein "	LOC_Os06g07969.1	"cytochrome b-c1 complex subunit 8, putative, expressed"	Medtr5g083510.1	"Cytochrome b-c1 complex subunit 8 (exp=-1; wgp=-1; cg=-1; clo, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153682.1.A1_s_at	A	A1TS	POPTR_0002s20400	POPTR_0002s20400 (11)	scaffold_2:16460103-16460246(-) (11)	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os03g22180.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.153697.1.A1_at	A	A1TS	POPTR_0014s02360	POPTR_0014s02360 (11)	scaffold_14:1985232-1985350(-) (11)	NA	NA	NA	AT3G46630.1	Protein of unknown function (DUF3223) 	LOC_Os08g21700.1	"DCL, chloroplast precursor, putative, expressed"	Medtr3g147240.1	"Protein DCL, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153697.1.A1_s_at	A	A1TS	POPTR_0014s02360	POPTR_0014s02360 (11)	scaffold_14:1985378-1985838(-) (11)	NA	NA	NA	AT3G46630.1	Protein of unknown function (DUF3223) 	LOC_Os08g21700.1	"DCL, chloroplast precursor, putative, expressed"	Medtr3g147240.1	"Protein DCL, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153700.1.A1_at	A	A1TS	POPTR_0001s47480	POPTR_0001s47480 (11)	scaffold_1:47655275-47656332(-) (11)	NA	Q8VE80	THO complex subunit 3	AT5G56130.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os09g12710.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g080610.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153701.1.A1_a_at	A	A2TS	POPTR_0005s02710	POPTR_0013s01970 (11)//POPTR_0005s02710 (11)	scaffold_13:1144928-1145709(+) (11)//scaffold_5:1734118-1734888(+) (11)	NA	Q9Y4C1	Lysine-specific demethylase 3A	AT1G09060.3	"Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase "	LOC_Os03g22540.1	"jmjC domain containing protein, expressed"	Medtr1g099670.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153701.1.A1_at	A	A1TS	POPTR_0013s01970	POPTR_0013s01970 (11)	scaffold_13:1143646-1145687(+) (11)	NA	Q5HZN1	Lysine-specific demethylase 3A-B	AT1G09060.3	"Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase "	LOC_Os03g22540.1	"jmjC domain containing protein, expressed"	Medtr1g099670.1	"Zinc finger, RING-type; Transcription factor jumonji, jmjC; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153721.1.A1_at	A	A1TS	POPTR_0006s26850	POPTR_0006s26850 (10)	scaffold_6:24926996-24927236(-) (11)	NA	Q3V384	Lactation elevated protein 1	AT2G25530.1	AFG1-like ATPase family protein 	LOC_Os03g63500.1	"ATPase, AFG1 family domain containing protein, expressed"	Medtr1g013700.1	AFG1-like ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.153725.1.A1_at	A	A1TS	POPTR_0003s21120	POPTR_0003s21120 (11)	scaffold_3:19402886-19403392(+) (11)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153729.1.A1_at	A	A1TS	POPTR_0014s10750	POPTR_0014s10750 (11)	scaffold_14:8039626-8039971(+) (11)	NA	Q9ZSI7	Probable WRKY transcription factor 47	AT4G01720.1	WRKY family transcription factor 	LOC_Os01g18584.1	"OsWRKY9 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g134120.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.153735.1.A1_at	A	A1TS	POPTR_0016s03460	POPTR_0016s03460 (11)	scaffold_16:1832741-1833205(+) (11)	NA	O80674	Transcription factor bHLH106	AT2G41130.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr7g106450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.153748.1.A1_at	A	A1TS	POPTR_0005s21910	POPTR_0005s21910 (10)	scaffold_5:20959605-20962124(-) (11)	NA	Q03829	Uncharacterized mitochondrial carrier YMR166C	AT4G39460.2	S-adenosylmethionine carrier 1 	LOC_Os05g29860.2	"mitochondrial carrier protein, putative, expressed"	Medtr4g141110.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15375.1.S1_at	A	A1TS	POPTR_0006s11880	POPTR_0006s11880 (11)	scaffold_6:9081887-9082422(+) (11)	NA	Q9LF92	F-box protein PP2-A15	AT3G53000.1	phloem protein 2-A15 	LOC_Os02g45320.1	"OsFBX58 - F-box domain containing protein, expressed"	Medtr5g010960.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15375.2.S1_a_at	A	A1TS	POPTR_0006s11880	POPTR_0006s11880 (10)	scaffold_6:9079838-9081837(+) (10)	NA	Q9LF92	F-box protein PP2-A15	AT3G53000.1	phloem protein 2-A15 	LOC_Os02g45320.1	"OsFBX58 - F-box domain containing protein, expressed"	Medtr5g010960.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153758.1.A1_at	A	A1TS	POPTR_0018s14950	POPTR_0018s14950 (11)	scaffold_18:14945893-14946320(-) (11)	NA	NA	NA	AT1G17830.1	Protein of unknown function (DUF789) 	LOC_Os10g35150.1	expressed protein	Medtr8g096450.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153759.1.A1_at	A	A1TS	POPTR_0015s13980	POPTR_0015s13980 (11)	scaffold_15:13736244-13736511(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153768.1.A1_at	A	A1TS	POPTR_0003s21370	POPTR_0003s21370 (11)	scaffold_3:19560394-19560834(-) (11)	NA	NA	NA	AT1G55265.1	"Protein of unknown function, DUF538 "	LOC_Os03g48626.1	expressed protein	Medtr4g133920.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153769.1.A1_at	A	A1TS	POPTR_0011s02640	POPTR_0011s02640 (11)	scaffold_11:2556489-2558855(+) (11)	NA	Q28G87	La-related protein 7	AT5G46250.1	RNA-binding protein 	LOC_Os01g55170.1	"la domain containing protein, expressed"	Medtr2g024800.1	RNA-binding region RNP-1 (RNA recognition motif); Winged helix repressor DNA-binding 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.153772.1.S1_at	A	A1TS	POPTR_0009s12300	POPTR_0009s12300 (11)	scaffold_9:10062188-10063346(+) (11)	POPTR_0004s16630 (6)	Q9SJT1	SUMO-activating enzyme subunit 2	AT2G21470.1	SUMO-activating enzyme 2 	LOC_Os07g39780.2	"SUMO-activating enzyme subunit 2, putative, expressed"	Medtr8g040410.1	SAE2 	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0008641|small protein activating enzyme activity||GO:0005524|ATP binding	NA
PtpAffx.153777.1.A1_at	A	A1TS	POPTR_0006s03300	POPTR_0006s03300 (10)	scaffold_6:2099656-2100064(-) (11)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.153780.1.A1_at	A	A1TS	POPTR_0006s25510	POPTR_0006s25510 (11)	scaffold_6:23918590-23918909(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15379.1.S1_at	A	A1TS	POPTR_0018s09360	POPTR_0018s09360 (11)	scaffold_18:10234743-10235160(+) (11)	NA	NA	NA	AT4G29110.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to chitin; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52140.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g36070.1	expressed protein	Medtr2g122250.1	Biotin-binding site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153792.1.A1_at	A	A1TS	POPTR_0005s25870	POPTR_0005s25870 (11)	scaffold_5:24085101-24085635(+) (11)	NA	Q9FQ03	5'-3' exoribonuclease 3	AT1G75660.1	5'-3' exoribonuclease 3 	LOC_Os01g65220.1	"XRN 5'-3' exonuclease N-terminus domain containing protein, expressed"	Medtr4g079110.1	"Zinc finger, CCHC-type; Putative 5-3 exonuclease "	NA	GO:0004527|exonuclease activity||GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.153793.1.S1_s_at	A	A1TS	POPTR_0018s03920	POPTR_0018s03920 (11)	scaffold_18:3342982-3343641(-) (11)	NA	NA	NA	AT4G31340.1	myosin heavy chain-related 	LOC_Os08g40790.1	"DNA repair ATPase-related, putative, expressed"	Medtr3g132830.1	"DNA repair ATPase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153818.1.A1_s_at	A	A1TS	POPTR_0008s12920	POPTR_0008s12920 (11)	scaffold_8:8403856-8404252(+) (11)	NA	Q54R62	Uridine-cytidine kinase C	AT2G01460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g21110.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.153825.1.A1_at	A	A1TS	POPTR_0630s00200	POPTR_0630s00200 (11)	scaffold_3:8401562-8402005(-) (11)//scaffold_630:13175-13618(-) (11)	POPTR_0003s06860 (8)	NA	NA	AT1G72430.1	SAUR-like auxin-responsive protein family  	LOC_Os08g35110.1	"OsSAUR33 - Auxin-responsive SAUR gene family member, expressed"	Medtr8g025960.1	Auxin responsive SAUR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153842.1.A1_at	A	A1TS	POPTR_0017s00330	POPTR_0017s00330 (10)	scaffold_17:91528-91561(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr3g151520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153842.1.A1_s_at	A	A1TS	POPTR_0017s00330	POPTR_0017s00330 (11)	scaffold_17:91507-91841(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g151520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153843.1.A1_at	A	A2TS	POPTR_0002s18290	POPTR_0002s18290 (11)//POPTR_0002s18310 (10)	scaffold_2:14259224-14260189(-) (11)//scaffold_2:14273901-14274866(-) (10)	NA	Q9M126	NAC domain-containing protein 69	AT4G35580.3	NAC transcription factor-like 9 	LOC_Os08g06140.3	"no apical meristem protein, putative, expressed"	AC233662_24.1	No apical meristem (NAM) protein AC233662.1 111985-113606 H EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.153847.1.A1_at	A	A1TS	POPTR_0012s13150	POPTR_0012s13150 (11)	scaffold_12:13431872-13432915(+) (11)	NA	Q67ZM4	Actin-depolymerizing factor 7	AT4G25590.1	actin depolymerizing factor 7 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr1g127180.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
PtpAffx.153853.1.S1_a_at	A	A1TS	POPTR_0005s03520	POPTR_0005s03520 (11)	scaffold_5:2367315-2367465(-) (11)	NA	Q6NYY9	Transmembrane protein 49	AT4G14950.1	SNARE associated Golgi protein family 	LOC_Os01g57066.1	"transmembrane protein 49, putative, expressed"	Medtr5g006190.1	"Transmembrane protein 49, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153857.1.A1_at	A	A1TS	POPTR_0001s00700	POPTR_0001s00700 (11)	scaffold_1:579799-580962(+) (11)	NA	Q66GP9	Nitric oxide synthase 1	AT3G47450.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g01440.1	"nitric oxide synthase 1, putative, expressed"	Medtr2g071140.1	"Nitric oxide synthase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153858.1.A1_at	A	A1TS	POPTR_0009s10570	POPTR_0009s10570 (11)	scaffold_9:9041794-9042444(-) (11)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153869.1.A1_at	A	A1TS	POPTR_0001s24190	POPTR_0001s24190 (11)	scaffold_1:23533362-23533837(-) (11)	NA	NA	NA	AT2G28690.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.1	expressed protein	Medtr4g079030.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153871.1.A1_at	A	A1TS	POPTR_0008s09510	POPTR_0008s09510 (11)	scaffold_8:5889654-5889989(+) (11)	NA	Q9ZQ89	Ureide permease 2	AT2G03530.2	ureide permease 2 	LOC_Os12g31850.4	"ureide permease, putative, expressed"	Medtr5g047390.1	Fatty acid elongase 3-ketoacyl-CoA synthase 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153878.1.A1_at	A	A1TS	POPTR_0015s12190	POPTR_0015s12190 (11)	scaffold_15:12562314-12563345(-) (11)	NA	P22302	"Superoxide dismutase [Fe], chloroplastic (Fragment)"	AT5G51100.1	Fe superoxide dismutase 2 	LOC_Os06g02500.1	"superoxide dismutase, chloroplast, putative, expressed"	NA	NA	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0016209|antioxidant activity||GO:0004784|superoxide dismutase activity||GO:0046872|metal ion binding	NA
PtpAffx.153891.1.A1_at	A	A1TS	POPTR_0017s02180	POPTR_0017s02180 (11)	scaffold_17:1605884-1606189(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153892.1.A1_at	A	A1TS	POPTR_0012s05820	POPTR_0012s05820 (11)	scaffold_12:5641821-5642440(+) (11)	NA	Q8GW64	"Peptidyl-tRNA hydrolase, chloroplastic"	AT1G18440.1	Peptidyl-tRNA hydrolase family protein 	LOC_Os01g49900.1	"peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed"	Medtr4g158480.1	Peptidyl-tRNA hydrolase 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0004045|aminoacyl-tRNA hydrolase activity	NA
PtpAffx.153915.1.A1_at	A	A1TS	POPTR_0005s16440	POPTR_0005s16440 (11)	scaffold_5:13184592-13184959(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153917.1.A1_at	A	A1TS	POPTR_0001s15650	POPTR_0001s15650 (11)	scaffold_1:12480202-12482361(+) (11)	NA	O34990	Formyltetrahydrofolate deformylase	AT5G47435.1	"formyltetrahydrofolate deformylase, putative "	LOC_Os03g01222.3	"formyl transferase, putative, expressed"	Medtr7g014920.1	"Formyl transferase, N-terminal "	GO:0009058|biosynthetic process	"GO:0016742|""hydroxymethyl-, formyl- and related transferase activity"""	NA
PtpAffx.153919.1.A1_s_at	A	A1TS	POPTR_0002s08410	POPTR_0002s08410 (11)	scaffold_2:5861496-5861652(+) (11)	NA	Q02060	"Photosystem II 22 kDa protein, chloroplastic"	AT1G44575.1	Chlorophyll A-B binding family protein 	LOC_Os01g64960.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr3g100820.1	Chlorophyll A-B binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153929.1.A1_at	A	A1TS	POPTR_0002s24980	POPTR_0002s24980 (11)	scaffold_2:22166430-22166841(-) (11)	NA	Q9SRT3	Probable xyloglucan glycosyltransferase 6	AT3G07330.1	Cellulose-synthase-like C6 	LOC_Os05g43530.1	"CSLC7 - cellulose synthase-like family C, expressed"	Medtr8g012660.1	"Glycosyl transferase, family 2; Inorganic pyrophosphatase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153934.1.A1_at	A	A1TS	POPTR_0016s05450	POPTR_0016s05450 (11)	scaffold_16:3377689-3378103(-) (11)	NA	Q64520	Guanylate kinase	AT3G57550.2	guanylate kinase 	LOC_Os12g33100.1	"guanylate kinase, putative, expressed"	Medtr7g110630.2	Guanylate kinase/L-type calcium channel region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153960.1.A1_s_at	A	A1TS	POPTR_0015s06930	POPTR_0015s06930 (11)	scaffold_15:7957516-7958994(-) (11)	NA	P09394	Glycerophosphoryl diester phosphodiesterase	AT1G74210.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os01g55780.1	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr3g076710.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
PtpAffx.153966.1.A1_at	A	A1TS	POPTR_0019s07980	POPTR_0019s07980 (10)	scaffold_19:9285204-9285591(+) (10)	NA	NA	NA	AT1G65320.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os01g69090.1	"CBS domain-containing protein, putative, expressed"	Medtr7g089400.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153966.2.A1_at	A	A1TS	POPTR_0013s08520	POPTR_0013s08520 (11)	scaffold_13:7737069-7737447(-) (11)	NA	NA	NA	AT1G65320.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os01g69090.1	"CBS domain-containing protein, putative, expressed"	Medtr7g089400.1	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153974.1.A1_a_at	A	A1TS	POPTR_0001s16880	POPTR_0001s16880 (11)	scaffold_1:13679679-13680263(+) (11)	NA	NA	NA	AT1G54150.1	E3 Ubiquitin ligase family protein 	LOC_Os03g08000.1	expressed protein	Medtr8g025010.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153977.1.A1_at	A	A1MS	POPTR_0002s04220	POPTR_0002s04220 (10)	scaffold_2:2644976-2645485(-) (11)	NA	Q9ZP54	Poly [ADP-ribose] polymerase 1	AT2G31320.1	poly(ADP-ribose) polymerase 2 	LOC_Os07g23110.1	"poly synthetase 1, putative, expressed"	Medtr4g069780.1	BRCT 	GO:0006471|protein amino acid ADP-ribosylation||GO:0044260|cellular macromolecule metabolic process	GO:0003677|DNA binding||GO:0003950|NAD+ ADP-ribosyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.153991.1.A1_at	A	A1TS	POPTR_0016s07140	POPTR_0016s07140 (11)	scaffold_16:4985397-4986940(-) (11)	NA	NA	NA	AT3G09180.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g15850.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.153993.1.A1_at	A	A1MS	POPTR_0019s13570	POPTR_0019s13570 (11)	scaffold_19:14471748-14472007(-) (11)	NA	P53603	Formimidoyltransferase-cyclodeaminase	AT2G20830.1	transferases;folic acid binding 	LOC_Os03g38540.1	"folic acid binding protein, putative, expressed"	Medtr8g102530.1	Formiminotransferase 	GO:0008152|metabolic process	GO:0005542|folic acid binding||GO:0016740|transferase activity	NA
PtpAffx.153996.1.A1_s_at	A	A1TS	POPTR_0005s09230	POPTR_0005s09230 (11)	scaffold_5:6447575-6447912(-) (11)	NA	Q9FYE2	Protein PHYTOCHROME KINASE SUBSTRATE 4	AT5G04190.1	phytochrome kinase substrate 4 	LOC_Os01g15990.1	expressed protein	Medtr7g105020.1	"phytochrome kinase substrate 1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1540.1.S1_x_at	A	A1TS	POPTR_0016s02050	POPTR_0016s02050 (10)	scaffold_16:978275-979443(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154011.1.A1_at	A	A1TS	POPTR_0001s34240	POPTR_0001s34240 (10)	scaffold_1:32379082-32379260(+) (10)	NA	Q9LK31	Kelch repeat-containing protein At3g27220	AT3G27220.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g41020.1	"kelch repeat protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154026.1.A1_at	A	A1TS	POPTR_0008s03910	POPTR_0008s03910 (11)	scaffold_8:2154284-2154641(+) (11)	NA	Q88C93	Phosphomannomutase/phosphoglucomutase	AT5G17530.2	phosphoglucosamine mutase family protein 	LOC_Os07g26610.1	"phosphoglucomutase, putative, expressed"	Medtr1g120920.1	Phosphoglucosamine mutase 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.154035.1.A1_at	A	A1TS	POPTR_0011s04330	POPTR_0011s04330 (10)	scaffold_11:4336605-4337287(+) (10)	NA	Q9NYA1	Sphingosine kinase 1	AT4G21540.1	sphingosine kinase 1 	LOC_Os01g57350.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.154068.1.A1_at	A	A1TS	POPTR_0007s07680	POPTR_0007s07680 (10)	scaffold_7:6051206-6051510(+) (10)	NA	Q43082	"Porphobilinogen deaminase, chloroplastic"	AT5G08280.1	hydroxymethylbilane synthase 	LOC_Os02g07230.1	"porphobilinogen deaminase, chloroplast precursor, putative, expressed"	Medtr4g104170.1	Porphobilinogen deaminase 	GO:0033014|tetrapyrrole biosynthetic process	GO:0004418|hydroxymethylbilane synthase activity	NA
PtpAffx.154077.1.A1_at	A	A1TS	POPTR_0001s41530	POPTR_0001s41530 (11)	scaffold_1:41138576-41139393(-) (11)	NA	P82869	"Peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic"	AT3G15520.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os07g37830.2	"peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor, putative, expressed"	NA	NA	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
PtpAffx.154098.1.A1_at	A	A1TS	POPTR_0005s01810	POPTR_0005s01810 (11)	scaffold_107:16189-16375(+) (11)//scaffold_107:17132-22838(+) (11)//scaffold_107:34686-44738(+) (11)//scaffold_5:1200768-1200947(+) (11)//scaffold_5:1217027-1217206(+) (11)//scaffold_5:1220390-1220569(+) (11)	NA	Q9ZR08	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	AT4G03230.1	S-locus lectin protein kinase family protein 	LOC_Os11g45540.1	"TKL_IRAK_DUF26-lh.11 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr2g011350.1	"Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154101.1.A1_at	A	A1TS	POPTR_0010s21720	POPTR_0010s21720 (11)	scaffold_10:18886133-18886672(-) (11)	NA	Q9M3B9	ABC transporter B family member 20	AT3G55320.1	P-glycoprotein  20 	LOC_Os01g74470.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr5g029640.1	Cyclic peptide transporter 	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
PtpAffx.154120.1.A1_at	A	A1TS	POPTR_0010s13150	POPTR_0010s13150 (11)	scaffold_10:13027367-13027851(-) (11)	NA	NA	NA	AT1G68390.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os04g20420.1	"DNA binding protein, putative, expressed"	Medtr1g140570.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.154123.1.A1_at	A	A1TS	POPTR_0002s19170	POPTR_0002s19170 (10)	scaffold_2:15089674-15090051(-) (10)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154127.1.A1_at	A	A1TA	POPTR_0001s01980	POPTR_0001s01980 (9)	scaffold_1:1439857-1440035(+) (9)	NA	NA	NA	AT1G32230.2	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154132.1.A1_at	A	A1TS	POPTR_0013s05710	POPTR_0013s05710 (11)	scaffold_13:4108228-4108616(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154149.1.A1_at	A	A1TS	POPTR_0001s04650	POPTR_0001s04650 (11)	scaffold_1:3616905-3617329(+) (11)	NA	P13240	Disease resistance response protein 206	AT1G58170.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	Medtr7g076490.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154153.2.A1_s_at	A	A1TS	POPTR_0008s09020	POPTR_0008s09020 (11)	scaffold_8:5595187-5597096(+) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G26690.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
PtpAffx.154166.1.A1_at	A	A1TS	POPTR_0006s06470	POPTR_0006s06470 (9)	scaffold_6:4615271-4615712(-) (9)	NA	NA	NA	AT3G53270.5	"Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein "	LOC_Os10g35130.1	expressed protein	Medtr8g121380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154167.1.A1_at	A	A1TS	POPTR_0010s13550	POPTR_0010s13550 (9)	scaffold_10:13374655-13374969(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154171.1.A1_at	A	A1TS	POPTR_0011s14940	POPTR_0011s14940 (11)	scaffold_11:17164306-17164847(-) (11)	NA	NA	NA	AT3G51500.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g10010.2	expressed protein	Medtr5g024970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15418.1.S1_at	A	A1TS	POPTR_0014s13630	POPTR_0014s13630 (11)	scaffold_14:10002030-10005533(+) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT3G02070.1	Cysteine proteinases superfamily protein 	LOC_Os04g32970.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154196.1.A1_at	A	A1TS	POPTR_0011s16790	POPTR_0011s16790 (11)	scaffold_11:18553218-18553704(-) (11)	NA	O65583	Uridine kinase-like protein 4	AT4G26510.2	uridine kinase-like 4 	LOC_Os02g17320.2	"uridine/cytidine kinase-like 1, putative, expressed"	Medtr5g104300.1	Phosphoribulokinase/uridine kinase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154199.1.S1_at	A	A1TS	POPTR_0011s16770	POPTR_0011s16770 (11)	scaffold_11:18541872-18542751(-) (11)	NA	P38166	Protein transport protein SFT2	AT5G56020.1	Got1/Sft2-like vescicle transport protein family 	LOC_Os06g19620.1	"SFT2, putative, expressed"	Medtr3g080130.1	SFT2-like 	GO:0016192|vesicle-mediated transport	NA	NA
PtpAffx.154204.1.A1_at	A	A1TS	POPTR_0010s22390	POPTR_0010s22390 (11)	scaffold_10:19343459-19343708(+) (11)	NA	Q9M3G7	Serine/threonine-protein kinase ATM	AT3G54760.2	dentin sialophosphoprotein-related 	LOC_Os05g38810.1	"PWWP domain containing protein, expressed"	Medtr1g086970.1	PWWP; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154239.1.S1_at	A	A1TS	POPTR_0001s25520	POPTR_0001s25520 (10)	scaffold_1:24606453-24606923(+) (10)	NA	Q10422	Uncharacterized RNA-binding protein C25G10.01	AT1G07350.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g15890.2	"RNA recognition motif containing protein, expressed"	Medtr5g023040.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.154303.1.S1_s_at	A	A1TS	POPTR_0003s03330	POPTR_0003s03330 (10)	scaffold_3:3709174-3709528(-) (10)	NA	O23553	"Beta-amylase 3, chloroplastic"	AT4G17090.1	chloroplast beta-amylase 	LOC_Os10g41550.1	"beta-amylase, putative, expressed"	Medtr5g013800.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.154317.1.A1_at	A	A1MS	POPTR_0014s03930	POPTR_0014s03930 (11)	scaffold_14:3137297-3137388(+) (11)	NA	P0C7Q8	Protein DA1	AT1G19270.1	DA1 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.154317.1.A1_s_at	A	A1TS	POPTR_0014s03930	POPTR_0014s03930 (11)	scaffold_14:3136186-3137256(+) (11)	NA	P0C7Q8	Protein DA1	AT1G19270.1	DA1 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.154326.1.S1_s_at	A	A1TS	POPTR_0010s10580	POPTR_0010s10580 (11)	scaffold_10:11077944-11079263(+) (11)	NA	NA	NA	AT1G24040.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os04g39140.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr5g036340.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.15434.1.A1_s_at	A	A2TS	POPTR_0014s06820	POPTR_0014s06820 (11)//POPTR_0014s06790 (10)	scaffold_14:5127500-5127550(+) (10)//scaffold_14:5142463-5142528(+) (11)	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	AC233070_7.1	Cytochrome P450 AC233070.4 33530-28470 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.15434.2.A1_at	A	A1MS	POPTR_0014s06820	POPTR_0014s06820 (11)	scaffold_14:5142271-5142762(+) (11)	NA	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	AC233070_7.1	Cytochrome P450 AC233070.4 33530-28470 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.15434.3.A1_a_at	A	A2MS	POPTR_0009s14770	POPTR_0014s06820 (10)//POPTR_0009s14770 (10)	scaffold_14:5142326-5142359(+) (10)//scaffold_206:16816-16849(+) (10)//scaffold_7:315707-315740(-) (10)//scaffold_9:11506516-11506549(+) (10)	POPTR_0014s06790 (8)	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	Medtr8g151050.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15434.3.A1_s_at	A	A2TS	POPTR_0014s06790	POPTR_0014s06820 (11)//POPTR_0014s06790 (11)	scaffold_14:5127059-5127439(+) (11)//scaffold_14:5142008-5142402(+) (11)	POPTR_0009s14770 (8)	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	AC233070_7.1	Cytochrome P450 AC233070.4 33530-28470 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.154396.1.S1_at	A	A1TS	POPTR_0001s07010	POPTR_0001s07010 (9)	scaffold_1:5352307-5352505(+) (9)	NA	Q7KWN2	Probable cytochrome P450 525A1	AT1G31800.1	"cytochrome P450, family 97, subfamily A, polypeptide 3 "	LOC_Os07g45000.1	"cytochrome P450, putative, expressed"	Medtr4g032760.2	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154411.1.S1_s_at	A	A1TS	POPTR_0015s05760	POPTR_0015s05760 (11)	scaffold_15:6117145-6117495(-) (11)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g49830.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.15442.1.A1_a_at	A	A1TS	POPTR_0011s10740	POPTR_0011s10740 (11)	scaffold_11:13317770-13318220(-) (11)	NA	NA	NA	AT3G14850.2	TRICHOME BIREFRINGENCE-LIKE 41 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr3g064330.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154422.1.S1_at	A	A1TS	POPTR_0002s00760	POPTR_0002s00760 (11)	scaffold_2:347573-347894(+) (11)	POPTR_0005s27680 (6)	Q8LPQ8	Monosaccharide-sensing protein 2	AT4G35300.4	tonoplast monosaccharide transporter2 	LOC_Os02g13560.4	"transporter family protein, putative, expressed"	Medtr3g159920.1	Major facilitator superfamily 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.154430.1.S1_at	A	A1TS	POPTR_0007s02740	POPTR_0007s02740 (10)	scaffold_421:7002-7497(-) (10)//scaffold_7:1594447-1594944(-) (11)	POPTR_0421s00210 (8)	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os03g16960.1	"cysteine-rich repeat secretory protein 55 precursor, putative, expressed"	Medtr2g103510.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154433.1.S1_s_at	A	A2TS	POPTR_0001s24620	POPTR_0009s03590 (11)//POPTR_0001s24620 (11)	scaffold_1:23875932-23876972(-) (11)//scaffold_9:4208870-4209918(-) (11)	NA	Q9LQN6	Probable protein phosphatase 2C 4	AT1G07630.1	pol-like 5 	LOC_Os03g60650.1	"protein phosphatase 2C, putative, expressed"	Medtr8g102940.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154444.1.S1_s_at	A	A1TS	POPTR_0001s27110	POPTR_0001s27110 (11)	scaffold_1:26052811-26053578(-) (11)	NA	NA	NA	AT3G08030.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154446.1.S1_s_at	A	A1TS	POPTR_0008s04590	POPTR_0008s04590 (11)	scaffold_8:2616051-2617101(+) (11)	NA	Q9ZUU1	"Probable adenylate kinase 1, chloroplastic"	AT2G37250.1	adenosine kinase 	LOC_Os03g03820.1	"adenylate kinase, putative, expressed"	Medtr7g120720.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154457.1.S1_at	A	A1TS	POPTR_0002s02390	POPTR_0002s02390 (10)	scaffold_2:1353549-1354868(+) (10)	NA	P48583	ER lumen protein retaining receptor	AT1G75760.1	ER lumen protein retaining receptor family protein 	LOC_Os08g43470.1	"ER lumen protein retaining receptor, putative, expressed"	Medtr3g156420.1	ER lumen protein retaining receptor; Orn/DAP/Arg decarboxylase 2 	GO:0006621|protein retention in ER lumen	GO:0046923|ER retention sequence binding	GO:0016021|integral to membrane
PtpAffx.15446.1.A1_at	A	A1TS	POPTR_0005s05650	POPTR_0005s05650 (11)	scaffold_5:3715293-3715484(-) (11)	NA	P16157	Ankyrin-1	AT3G04710.3	ankyrin repeat family protein 	LOC_Os05g01310.2	"ankyrin repeat family protein, putative, expressed"	Medtr5g046490.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154470.1.S1_at	A	A1TS	POPTR_0011s14750	POPTR_0011s14750 (10)	scaffold_11:17032596-17033129(+) (10)	NA	A3KPF8	"Pentatricopeptide repeat-containing protein At1g79080, chloroplastic"	AT1G79080.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os02g35750.2	"pentatricopeptide repeat domain containing protein, putative, expressed"	Medtr1g093590.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15449.1.S1_at	A	A1TS	POPTR_0010s14950	POPTR_0010s14950 (10)	scaffold_10:14393273-14393589(-) (10)	NA	Q05047	Secologanin synthase	AT2G26710.1	Cytochrome P450 superfamily protein 	LOC_Os01g43740.1	"cytochrome P450 72A1, putative, expressed"	Medtr5g102790.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.154504.1.S1_at	A	A1TS	POPTR_0008s01340	POPTR_0008s01340 (11)	scaffold_8:658730-659250(+) (11)	NA	P31213	3-oxo-5-alpha-steroid 4-dehydrogenase 2	AT5G16010.1	3-oxo-5-alpha-steroid 4-dehydrogenase family protein 	LOC_Os07g06800.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, putative, expressed"	Medtr6g041190.1	"3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal "	GO:0006629|lipid metabolic process	"GO:0016627|""oxidoreductase activity, acting on the CH-CH group of donors"""	GO:0005737|cytoplasm||GO:0016021|integral to membrane
PtpAffx.154539.1.S1_s_at	A	A1TS	POPTR_0016s08040	POPTR_0016s08040 (11)	scaffold_16:5856045-5856376(+) (11)	NA	NA	NA	AT3G52710.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36220.1); Has 64 Blast hits to 64 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g127500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154542.1.S1_s_at	A	A1TS	POPTR_0010s18110	POPTR_0010s18110 (11)	scaffold_10:16465213-16465520(-) (11)	NA	Q9LTW0	ALA-interacting subunit 1	AT3G12740.1	ALA-interacting subunit 1 	LOC_Os06g45430.1	"cell cycle control protein, putative, expressed"	Medtr2g122470.1	"Protein of unknown function DUF284, transmembrane eukaryotic "	NA	NA	GO:0016020|membrane
PtpAffx.154543.1.A1_a_at	A	A1TS	POPTR_0004s16130	POPTR_0004s16130 (9)	scaffold_4:16568331-16568633(-) (9)	NA	P54654	Adenylyl cyclase-associated protein	AT4G34490.1	cyclase associated protein 1 	LOC_Os03g51250.1	"adenylyl cyclase-associated protein, putative, expressed"	Medtr4g095480.1	Cyclase-associated protein; 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
PtpAffx.154549.1.A1_at	A	A1TS	POPTR_0001s11890	POPTR_0001s11890 (10)	scaffold_1:9214307-9215058(-) (10)	NA	NA	NA	AT2G02370.2	SNARE associated Golgi protein family 	LOC_Os03g25750.1	"SNARE associated Golgi protein, putative, expressed"	Medtr2g034030.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154573.1.A1_at	A	A1TS	POPTR_0007s07860	POPTR_0007s07860 (11)	scaffold_7:6294863-6295391(-) (11)	NA	Q9LIH7	Probable S-acyltransferase At3g18620	AT3G18620.1	DHHC-type zinc finger family protein 	LOC_Os06g20400.5	"DHHC zinc finger domain containing protein, expressed"	Medtr4g101410.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.154587.1.S1_s_at	A	A1TS	POPTR_0005s20450	POPTR_0005s20450 (11)	scaffold_5:19499323-19501006(+) (11)	NA	Q03520	Tetrachloro-P-hydroquinone reductive dehalogenase	AT1G77290.2	Glutathione S-transferase family protein 	LOC_Os04g35560.2	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154622.1.S1_at	A	A1TS	POPTR_0010s00550	POPTR_0010s00550 (11)	scaffold_10:305461-306329(+) (11)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT1G48280.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os08g03560.2	"chloroplast unusual positioning protein, putative, expressed"	Medtr8g133820.1	"hydroxyproline-rich glycoprotein family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154638.1.S1_s_at	A	A2TS	POPTR_0012s10770	POPTR_0015s11640 (11)//POPTR_0012s10770 (11)	scaffold_12:11456359-11456631(-) (11)//scaffold_15:12189397-12189669(-) (11)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
PtpAffx.154647.1.S1_at	A	A1TS	POPTR_0015s12090	POPTR_0015s12090 (9)	scaffold_15:12505967-12506503(-) (9)	NA	B2V855	Glutamyl-tRNA(Gln) amidotransferase subunit A	AT5G07360.1	Amidase family protein 	LOC_Os11g33090.1	"amidase, putative, expressed"	Medtr4g145040.1	Amidase 	NA	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.154690.1.S1_a_at	A	A1TS	POPTR_0009s11730	POPTR_0009s11730 (9)	scaffold_9:9684909-9685137(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr4g095320.1	"suspensor-specific protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154695.1.S1_at	A	A1TS	POPTR_0008s13490	POPTR_0008s13490 (10)	scaffold_8:8876200-8877346(+) (10)	NA	Q940D0	Two-component response regulator ARR1	AT3G16857.1	response regulator 1 	LOC_Os03g12350.4	"two-component response regulator, putative, expressed"	Medtr3g138060.1	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.154722.1.S1_s_at	A	A1TS	POPTR_0012s07670	POPTR_0012s07670 (11)	scaffold_12:8584917-8585331(-) (11)	NA	Q9STS3	Anaphase-promoting complex subunit 8	AT3G48150.1	anaphase-promoting complex subunit 8 	LOC_Os02g43920.1	"cell division cycle protein 23, putative, expressed"	Medtr8g025270.1	Cdc23 	GO:0030071|regulation of mitotic metaphase/anaphase transition	NA	GO:0005680|anaphase-promoting complex
PtpAffx.154735.1.S1_at	A	A1TS	POPTR_0010s22200	POPTR_0010s22200 (11)	scaffold_10:19185173-19185503(-) (11)	NA	A1JLU9	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	AT2G39290.1	phosphatidylglycerolphosphate synthase 1 	LOC_Os03g17520.1	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr1g146580.1	CDP-alcohol phosphatidyltransferase 	GO:0008654|phospholipid biosynthetic process	"GO:0016780|""phosphotransferase activity, for other substituted phosphate groups"""	GO:0016020|membrane
PtpAffx.154747.1.S1_at	A	A1TS	POPTR_0014s17020	POPTR_0014s17020 (11)	scaffold_14:13206130-13206645(-) (11)	NA	NA	NA	AT5G48310.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24610.1). 	LOC_Os02g52280.1	expressed protein	Medtr5g106300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154748.1.S1_at	A	A1TS	POPTR_0009s09870	POPTR_0009s09870 (9)	scaffold_9:8645557-8645738(+) (9)	NA	P31657	Probable cinnamyl alcohol dehydrogenase	AT3G19450.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os02g09490.1	"dehydrogenase, putative, expressed"	Medtr5g032800.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.154758.1.S1_at	A	A1TS	POPTR_0011s00760	POPTR_0011s00760 (11)	scaffold_11:378614-379290(+) (11)	NA	Q5KFA4	Acyl-protein thioesterase 1	AT4G22300.1	carboxylesterases 	LOC_Os04g57370.1	"acyl-protein thioesterase, putative, expressed"	Medtr8g147580.1	Phospholipase/Carboxylesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.154761.1.S1_at	A	A1TS	POPTR_0002s14500	POPTR_0002s14500 (11)	scaffold_2:10782481-10782968(-) (11)	NA	O81316	Scarecrow-like protein 6	AT4G00150.1	GRAS family transcription factor 	LOC_Os02g44360.1	"scarecrow transcription factor family protein, putative, expressed"	Medtr4g029350.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154769.1.S1_at	A	A1TS	POPTR_0006s09390	POPTR_0006s09390 (11)	scaffold_6:6898227-6900918(-) (11)	NA	Q9ZUI6	AP-1 complex subunit gamma-2	AT1G60070.1	"Adaptor protein complex AP-1, gamma subunit "	LOC_Os06g07090.2	"AP-1 complex subunit gamma-1, putative, expressed"	Medtr5g035910.1	"Adaptin, N-terminal; Gamma-adaptin, C-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
PtpAffx.154775.1.S1_s_at	A	A1TS	POPTR_0006s10520	POPTR_0006s10520 (11)	scaffold_6:7885152-7886185(-) (11)	NA	Q9SCT4	Probably inactive leucine-rich repeat receptor-like protein kinase IMK2	AT3G51740.1	inflorescence meristem receptor-like kinase 2 	LOC_Os03g18630.1	"receptor-like kinase RHG1, putative, expressed"	Medtr4g011440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.15478.1.A1_s_at	A	A1TS	POPTR_0010s14390	POPTR_0010s14390 (10)	scaffold_10:14024652-14025218(+) (10)	NA	Q42679	S-adenosylmethionine decarboxylase proenzyme	AT3G25570.2	Adenosylmethionine decarboxylase family protein 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr2g026090.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.154812.1.S1_s_at	A	A1TS	POPTR_0009s16210	POPTR_0009s16210 (11)	scaffold_9:12383432-12384181(-) (11)	NA	NA	NA	AT5G22340.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to 58 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g20640.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154816.1.S1_at	A	A1TS	POPTR_0008s03980	POPTR_0008s03980 (10)	scaffold_8:2194918-2195262(+) (10)	NA	Q99685	Monoglyceride lipase	AT5G19290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g21560.1	"esterase/lipase/thioesterase family protein, putative, expressed"	Medtr1g120940.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15485.1.S1_a_at	A	A1TS	POPTR_0001s02910	POPTR_0001s02910 (11)	scaffold_1:2299793-2300093(-) (11)	NA	Q6LA43	Two-component response regulator-like APRR2	AT4G18020.5	CheY-like two-component responsive regulator family protein 	LOC_Os01g13740.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr5g014220.2	"Myb, DNA-binding; Response regulator receiver; Response regulator, RegA/PrrA/ActR type; Homeodomain-related "	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.154852.1.S1_at	A	A1TS	POPTR_0014s06190	POPTR_0014s06190 (10)	scaffold_14:4709152-4709621(-) (10)	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os10g40740.1	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.154852.2.S1_a_at	A	A2TS	POPTR_0002s14430	POPTR_0002s14430 (11)//POPTR_0014s06190 (11)	scaffold_14:4709685-4709817(-) (11)//scaffold_2:10697218-10697350(+) (11)	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.154852.2.S1_at	A	A1TS	POPTR_0002s14430	POPTR_0002s14430 (11)	scaffold_2:10697053-10697600(+) (11)	NA	Q8GZ38	Transcription factor UNE10	AT4G00050.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr5g041500.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.154868.1.S1_s_at	A	A1TS	POPTR_0007s11920	POPTR_0007s11920 (11)	scaffold_7:12267518-12268812(-) (11)	NA	P49082	Guanine nucleotide-binding protein alpha-1 subunit	AT2G23460.1	extra-large G-protein 1 	LOC_Os12g40190.1	"G-protein alpha subunit, putative, expressed"	Medtr5g018540.2	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.154872.1.S1_at	A	A1TS	POPTR_0003s03410	POPTR_0003s03410 (10)	scaffold_3:3826721-3827236(-) (10)//scaffold_599:8686-9201(-) (10)	NA	NA	NA	AT1G32740.1	SBP (S-ribonuclease binding protein) family protein 	LOC_Os02g46220.1	expressed protein	Medtr5g013870.1	"F6N18.12, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154880.1.S1_at	A	A1TS	POPTR_0004s21720	POPTR_0004s21720 (11)	scaffold_4:20761686-20762344(-) (11)	NA	NA	NA	AT4G38225.3	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g03670.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15490.1.S1_s_at	A	A1TS	POPTR_0019s14810	POPTR_0019s14810 (11)	scaffold_19:15485897-15486409(+) (11)	NA	Q9C562	CBL-interacting serine/threonine-protein kinase 10	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g145620.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154914.1.S1_s_at	A	A1TS	POPTR_0001s20710	POPTR_0001s20710 (11)	scaffold_1:18820536-18821636(+) (11)	POPTR_0003s02960 (7)	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT3G13690.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain 	LOC_Os01g41870.2	"protein kinase, putative, expressed"	Medtr2g121520.1	"Tyrosine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154919.1.S1_at	A	A1TS	POPTR_0006s00570	POPTR_0006s00570 (11)	scaffold_6:301170-301487(+) (11)	POPTR_0016s00660 (7)	Q0DCT8	Protein kinase G11A	AT5G47750.1	D6 protein kinase like 2 	LOC_Os08g38320.3	"AGC_PVPK_like_kin82y.14 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.154919.2.S1_at	A	A1TS	POPTR_0016s00660	POPTR_0016s00660 (11)	scaffold_16:226390-226775(+) (11)	NA	Q0DCT8	Protein kinase G11A	AT5G47750.1	D6 protein kinase like 2 	LOC_Os08g38320.3	"AGC_PVPK_like_kin82y.14 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr2g032890.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15492.1.S1_at	A	A1TS	POPTR_0005s28000	POPTR_0005s28000 (10)	scaffold_5:25400518-25400924(+) (10)	NA	P14278	"Chlorophyll a-b binding protein 4, chloroplastic"	AT1G76570.1	Chlorophyll A-B binding family protein 	LOC_Os09g12540.1	"chlorophyll A-B binding protein, putative, expressed"	CU179634_22.1	Chlorophyll A-B binding protein CU179634.6 82649-85163 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.154920.1.S1_s_at	A	A1TS	POPTR_0009s11860	POPTR_0009s11860 (11)	scaffold_9:9769987-9770272(-) (11)	NA	NA	NA	AT1G75180.3	Erythronate-4-phosphate dehydrogenase family protein 	LOC_Os03g56420.1	expressed protein	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154923.1.S1_s_at	A	A2TS	POPTR_0006s01230	POPTR_0006s01230 (11)//POPTR_0016s01500 (11)	scaffold_16:688074-688205(-) (11)//scaffold_6:682804-682935(+) (11)	NA	O74503	Upstream activation factor subunit spp27	AT4G22360.1	SWIB complex BAF60b domain-containing protein 	LOC_Os08g39310.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr3g076380.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154927.1.S1_s_at	A	A1TS	POPTR_0017s04930	POPTR_0017s04930 (11)	scaffold_17:3788045-3788602(+) (11)	NA	Q8GUI4	Uncharacterized GPI-anchored protein At1g61900	AT2G30700.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G61900.1); Has 68 Blast hits to 67 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g38980.1	expressed protein	Medtr4g062290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154936.1.S1_at	A	A1TS	POPTR_0010s11710	POPTR_0010s11710 (11)	scaffold_10:11893595-11893921(-) (11)	NA	Q9ZU96	Ankyrin repeat-containing protein At2g01680	AT2G01680.1	Ankyrin repeat family protein 	LOC_Os02g50270.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr4g157130.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.154961.1.S1_at	A	A1TS	POPTR_0009s00990	POPTR_0009s00990 (10)	scaffold_9:1099207-1101458(-) (10)	NA	Q8GYD1	Protein disulfide-isomerase 5-1	AT1G07960.1	PDI-like 5-1 	LOC_Os03g17860.1	"OsPDIL5-1  protein disulfide isomerase PDIL5-1, expressed"	Medtr2g110920.1	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.154968.1.S1_at	A	A1TS	POPTR_0015s14990	POPTR_0015s14990 (11)	scaffold_15:14368751-14368936(-) (11)//scaffold_2019:3431-3616(-) (11)	POPTR_2019s00200 (8)	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os03g20470.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.154968.1.S1_s_at	A	A1TS	POPTR_0015s14990	POPTR_0015s14990 (11)	scaffold_15:14368191-14368915(-) (11)	NA	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os03g20470.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
PtpAffx.15499.1.S1_at	A	A1TS	POPTR_0006s24570	POPTR_0006s24570 (11)	scaffold_6:23160845-23161461(+) (11)	NA	O49954	"Glycine dehydrogenase [decarboxylating], mitochondrial"	AT4G33010.1	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155.1.S1_at	A	A1TS	POPTR_0015s11200	POPTR_0015s11200 (9)	scaffold_15:11841339-11842536(+) (10)	NA	Q7SYS6	Hydroxysteroid 11-beta-dehydrogenase 1-like protein B	AT5G50700.1	hydroxysteroid dehydrogenase 1 	LOC_Os12g27830.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.155.2.S1_a_at	A	A1TS	POPTR_0015s11200	POPTR_0015s11200 (11)	scaffold_15:11840376-11841258(+) (11)	NA	Q7SYS6	Hydroxysteroid 11-beta-dehydrogenase 1-like protein B	AT5G50700.1	hydroxysteroid dehydrogenase 1 	LOC_Os12g27830.1	"dehydrogenase/reductase, putative, expressed"	Medtr5g008900.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.15501.1.S1_s_at	A	A1TS	POPTR_0003s13080	POPTR_0003s13080 (10)	scaffold_3:13477793-13478123(-) (11)	NA	Q9SUS5	E3 ubiquitin-protein ligase RHA1B	AT1G63840.1	RING/U-box superfamily protein 	LOC_Os04g49000.1	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_53.1	"Zinc finger, RING-type AC235567.1 195082-192209 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155030.1.S1_at	A	A1TS	POPTR_0010s20930	POPTR_0010s20930 (11)	scaffold_10:18348772-18349164(-) (11)	NA	NA	NA	AT2G39705.1	ROTUNDIFOLIA like 8 	LOC_Os03g16600.1	expressed protein	Medtr5g087640.1	DVL 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15505.1.S1_at	A	A1TS	POPTR_0011s14970	POPTR_0011s14970 (11)	scaffold_11:17185142-17185950(-) (11)	NA	O81635	Kinesin-4	AT5G65930.2	kinesin-like calmodulin-binding protein (ZWICHEL) 	LOC_Os04g57140.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g025080.1	"Band 4.1; Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4; Kinesin, motor region; Prismane-like "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	GO:0005856|cytoskeleton
PtpAffx.155053.1.S1_s_at	A	A1TS	POPTR_0002s06900	POPTR_0002s06900 (11)	scaffold_2:4659766-4660917(+) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155063.1.S1_s_at	A	A1TS	POPTR_0002s10920	POPTR_0002s10920 (11)	scaffold_2:7974903-7975923(+) (11)	NA	NA	NA	AT5G64460.8	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr3g127570.1	Phosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155137.1.S1_at	A	A1TS	POPTR_0014s02910	POPTR_0014s02910 (11)	scaffold_14:2403216-2403411(+) (11)	NA	Q9LJK2	Abscisic acid 8'-hydroxylase 4	AT3G19270.1	"cytochrome P450, family 707, subfamily A, polypeptide 4 "	LOC_Os09g28390.1	"cytochrome P450, putative, expressed"	Medtr1g024340.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.155150.1.S1_at	A	A1TS	POPTR_0003s14320	POPTR_0003s14320 (11)	scaffold_3:14418444-14418895(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT4G10840.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g01960.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g113670.2	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155157.1.S1_at	A	A1TS	POPTR_0004s11490	POPTR_0004s11490 (10)	scaffold_4:10232090-10235533(+) (10)	NA	Q09809	Uncharacterized membrane protein C2G11.09	AT3G01100.1	hypothetical protein 1 	LOC_Os12g39320.1	"DUF221 domain containing protein, expressed"	Medtr6g013380.1	Protein of unknown function DUF221 	NA	NA	GO:0016020|membrane
PtpAffx.155166.1.S1_s_at	A	A2TS	POPTR_0006s04950	POPTR_0006s04950 (11)//POPTR_0016s05600 (11)	scaffold_16:3529515-3529774(-) (11)//scaffold_6:3456524-3456783(+) (11)	NA	NA	NA	AT2G41770.1	Protein of unknown function (DUF288) 	LOC_Os05g32500.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155173.1.S1_at	A	A1TS	POPTR_0016s03690	POPTR_0016s03690 (11)	scaffold_16:2044323-2044762(-) (11)	NA	Q7T0Q5	Nucleolar protein 10	AT3G56990.1	embryo sac development arrest 7 	LOC_Os06g03780.1	"NUC153 domain containing protein, expressed"	Medtr2g095390.1	WD40-like; NUC153 	NA	NA	GO:0005634|nucleus
PtpAffx.155174.1.S1_at	A	A1TS	POPTR_0012s12810	POPTR_0012s12810 (9)	scaffold_12:13212994-13215909(+) (9)	NA	P74436	Uncharacterized transporter sll0355	AT3G02690.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g35140.1	"integral membrane protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
PtpAffx.15518.1.S1_a_at	A	A1TS	POPTR_0009s02130	POPTR_0009s02130 (11)	scaffold_9:2751545-2752822(-) (11)	NA	Q9C578	Probable RNA 3'-terminal phosphate cyclase-like protein	AT5G22100.1	RNA cyclase family protein 	LOC_Os03g61790.1	"RNA 3-terminal phosphate cyclase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15518.2.S1_at	A	A1TS	POPTR_0009s02130	POPTR_0009s02130 (11)	scaffold_9:2749869-2750783(-) (11)	NA	Q9C578	Probable RNA 3'-terminal phosphate cyclase-like protein	AT5G22100.1	RNA cyclase family protein 	LOC_Os03g61790.1	"RNA 3-terminal phosphate cyclase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15518.3.A1_a_at	A	A1TS	POPTR_0009s02130	POPTR_0009s02130 (11)	scaffold_9:2751379-2751524(-) (11)	NA	Q9C578	Probable RNA 3'-terminal phosphate cyclase-like protein	AT5G22100.1	RNA cyclase family protein 	LOC_Os03g61790.1	"RNA 3-terminal phosphate cyclase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155180.1.S1_at	A	A1TS	POPTR_0001s36320	POPTR_0001s36320 (10)	scaffold_1:34864689-34866078(+) (10)	NA	Q6GNY1	E3 ubiquitin-protein ligase mib1	AT3G01750.1	Ankyrin repeat family protein 	LOC_Os05g23320.2	expressed protein	Medtr3g103280.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155183.1.S1_at	A	A1MS	POPTR_0002s04670	POPTR_0002s04670 (10)	scaffold_2:2913451-2913808(-) (10)	NA	Q9AR19	Histone acetyltransferase GCN5	AT3G54610.1	histone acetyltransferase of the GNAT family 1 	LOC_Os10g28040.1	"histone acetyltransferase GCN5, putative, expressed"	Medtr8g074500.1	GCN5-related N-acetyltransferase; Bromodomain 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
PtpAffx.155202.1.S1_s_at	A	A1TS	POPTR_0012s05250	POPTR_0012s05250 (11)	scaffold_12:4837885-4838829(+) (11)	POPTR_0015s03710 (6)	O95294	RasGAP-activating-like protein 1	AT3G18370.1	C2 domain-containing protein 	LOC_Os01g03820.1	"C2 domain containing protein, putative, expressed"	Medtr6g028380.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155226.1.S1_s_at	A	A1TS	POPTR_0015s01460	POPTR_0015s01460 (11)	scaffold_15:894204-894513(-) (11)	POPTR_0012s02350 (7)	Q84WF5	Probable VAMP-like protein At1g33475	AT5G52990.1	SNARE-like superfamily protein 	LOC_Os08g44430.2	"vesicle-associated membrane protein 727, putative, expressed"	Medtr3g123790.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155256.1.S1_at	A	A1TS	POPTR_0002s03360	POPTR_0002s03360 (11)	scaffold_2:2078513-2079256(+) (11)	NA	Q2RAC5	Cyclin-T1-3	AT5G45190.1	Cyclin family protein 	LOC_Os12g30020.2	"cyclin-T1-4, putative, expressed"	Medtr2g087920.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155274.1.S1_s_at	A	A1TS	POPTR_0004s15130	POPTR_0004s15130 (11)	scaffold_4:15798635-15799025(+) (11)	NA	Q8CBG9	RING finger protein 170	AT4G33940.1	RING/U-box superfamily protein 	LOC_Os03g62250.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g013260.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155289.1.S1_at	A	A1TS	POPTR_0006s03950	POPTR_0006s03950 (9)	scaffold_6:2680681-2680978(+) (9)	NA	O80366	Two-component response regulator ARR9	AT3G57040.1	response regulator 9 	LOC_Os11g04720.2	"OsRR10  type-A response regulator, expressed"	Medtr8g039500.1	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
PtpAffx.155290.1.S1_at	A	A1TS	POPTR_0002s09450	POPTR_0002s09450 (11)	scaffold_2:6732979-6733453(-) (11)	NA	Q9SGZ5	Probable beta-D-xylosidase 7	AT1G78060.1	Glycosyl hydrolase family protein 	LOC_Os02g51620.1	"glycosyl hydrolase family 3 protein, putative, expressed"	CU651566_9.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal CU651566.9 51724-46198 E EGN_Mt090430 200"	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.155292.1.S1_at	A	A1TS	POPTR_0008s16250	POPTR_0008s16250 (11)	scaffold_8:10878431-10880146(-) (11)	POPTR_0010s08690 (6)	Q8R1R3	"StAR-related lipid transfer protein 7, mitochondrial"	AT4G14500.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os07g08760.1	"START domain containing protein, putative, expressed"	Medtr5g007180.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155293.1.S1_at	A	A2TS	POPTR_0012s00460	POPTR_0012s00460 (11)//POPTR_0012s00200 (10)	scaffold_12:1827-2311(+) (11)//scaffold_12:164278-164763(+) (11)	NA	Q9URX1	UNC93-like protein C922.05c	AT1G18010.1	Major facilitator superfamily protein 	LOC_Os04g01520.1	expressed protein	Medtr3g122110.1	"Protein of unknown function DUF895, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155300.1.S1_at	A	A1TS	POPTR_0007s13780	POPTR_0007s13780 (11)	scaffold_7:13825442-13826158(-) (11)	NA	Q8VYZ3	Probable pectinesterase 53	AT5G19730.1	Pectin lyase-like superfamily protein 	LOC_Os01g53990.1	"pectinesterase, putative, expressed"	Medtr4g160050.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
PtpAffx.155308.1.S1_at	A	A1TS	POPTR_0009s08570	POPTR_0009s08570 (11)	scaffold_9:7803509-7804919(-) (11)	NA	Q93ZN9	"LL-diaminopimelate aminotransferase, chloroplastic"	AT4G33680.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g18810.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g122020.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.155333.1.S1_s_at	A	A2TS	POPTR_0004s04040	POPTR_0004s04050 (11)//POPTR_0004s04040 (11)	scaffold_4:2892066-2892447(+) (11)//scaffold_4:2909357-2909739(+) (11)	NA	NA	NA	AT4G04920.2	sensitive to freezing 6 	LOC_Os10g35560.2	expressed protein	AC233659_16.1	hypothetical protein AC233659.1 56005-69746 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155348.1.S1_at	A	A1TS	POPTR_0010s19140	POPTR_0010s19140 (11)	scaffold_10:17137730-17137991(-) (11)	NA	NA	NA	AT2G40320.1	TRICHOME BIREFRINGENCE-LIKE 33 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr5g090760.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155350.1.S1_s_at	A	A1TS	POPTR_0005s18520	POPTR_0005s18520 (11)	scaffold_5:16757964-16758471(+) (11)	NA	P43297	Cysteine proteinase RD21a	AT1G47128.1	Granulin repeat cysteine protease family protein 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g023920.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.155352.1.S1_at	A	A1TS	POPTR_0025s00350	POPTR_0025s00350 (11)	scaffold_25:119742-120162(+) (11)	NA	Q9Y5A7	NEDD8 ultimate buster 1	AT2G12550.1	ubiquitin-associated (UBA)/TS-N domain-containing protein 	LOC_Os04g55150.2	"UBA/TS-N domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155365.1.S1_s_at	A	A1TS	POPTR_0008s02180	POPTR_0008s02180 (11)	scaffold_8:1042038-1042605(-) (11)	NA	NA	NA	AT3G54260.1	TRICHOME BIREFRINGENCE-LIKE 36 	LOC_Os03g18110.1	"proteins of unknown function domain containing protein, putative, expressed"	Medtr5g079650.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155371.1.S1_s_at	A	A1TS	POPTR_0015s08190	POPTR_0015s08190 (11)	scaffold_15:9447619-9447886(-) (11)	NA	Q9S795	"Betaine aldehyde dehydrogenase 1, chloroplastic"	AT1G74920.1	aldehyde dehydrogenase 10A8 	LOC_Os04g39020.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125020.1	"Betaine aldehyde dehydrogenase 1, chloroplast precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.155376.1.S1_at	A	A1TS	POPTR_0012s04630	POPTR_0012s04630 (11)	scaffold_12:3970355-3970785(+) (11)	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT3G18050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g37156.1	expressed protein	Medtr4g155370.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155384.1.A1_at	A	A1TS	POPTR_0001s00780	POPTR_0001s00780 (11)	scaffold_1:631500-634743(-) (11)	NA	Q8U4K7	2-phosphoglycerate kinase	AT5G61450.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g28260.6	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155411.1.A1_at	A	A1TA	POPTR_0010s09970	POPTR_0010s09970 (10)	scaffold_10:10560963-10561349(+) (10)	NA	Q9LUW0	"Lipoxygenase 5, chloroplastic"	AT3G22400.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g49380.1	"lipoxygenase, putative, expressed"	Medtr1g132610.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
PtpAffx.155435.1.A1_at	A	A1TS	POPTR_0010s17140	POPTR_0010s17140 (11)	scaffold_10:15867665-15868172(+) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155435.2.S1_at	A	A1TS	POPTR_0013s02100	POPTR_0013s02100 (11)	scaffold_13:1235161-1235679(-) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155448.1.A1_s_at	A	A1TS	POPTR_0014s11370	POPTR_0014s11370 (11)	scaffold_14:8465748-8466316(-) (11)	NA	Q93XK2	Stachyose synthase	AT4G01970.1	stachyose synthase 	LOC_Os01g07530.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr4g136550.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155513.1.A1_s_at	A	A1TS	POPTR_0004s06620	POPTR_0004s06620 (11)	scaffold_4:5312705-5313047(+) (11)	NA	NA	NA	AT2G31270.1	homolog of yeast CDT1 A 	LOC_Os04g10650.1	"CDT1A - Putative DNA replication initiation protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155525.1.A1_at	A	A1TS	POPTR_0008s09120	POPTR_0008s09120 (10)	scaffold_8:5647651-5648181(-) (10)	NA	Q9C533	Probable S-acyltransferase At1g69420	AT1G69420.1	DHHC-type zinc finger family protein 	LOC_Os03g11110.1	"zinc finger family protein, putative, expressed"	Medtr5g045820.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.155528.1.A1_at	A	A1TS	POPTR_0003s01530	POPTR_0003s01530 (11)	scaffold_3:1390735-1391635(+) (11)	NA	Q9LDX1	Protein SUPPRESSOR OF GENE SILENCING 3	AT5G23570.1	XS domain-containing protein / XS zinc finger domain-containing protein-related 	LOC_Os12g09580.1	"leafbladeless1, putative, expressed"	Medtr2g007820.1	"Emr1, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155544.1.A1_at	A	A1TS	POPTR_0004s08390	POPTR_0004s08390 (11)	scaffold_4:6924052-6926871(+) (11)	NA	Q9YHB5	Condensin complex subunit 3	AT5G37630.1	ARM repeat superfamily protein 	LOC_Os06g14460.1	"chromosome condensation protein like, putative, expressed"	Medtr3g087440.1	"EMB2656 ; binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155545.1.A1_at	A	A1TS	POPTR_0006s00490	POPTR_0006s00490 (11)	scaffold_6:243308-243687(-) (11)	NA	Q5KS50	Coleoptile phototropism protein 1	AT5G47800.1	Phototropic-responsive NPH3 family protein 	LOC_Os09g09370.1	"BTBN18 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	AC233669_17.1	NPH3 AC233669.2 72476-75261 E EGN_Mt090430 200	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
PtpAffx.155548.1.A1_at	A	A1TS	POPTR_0005s24690	POPTR_0005s24690 (10)	scaffold_5:23146686-23147065(+) (10)	NA	Q7XI08	Probable E3 ubiquitin-protein ligase XBOS34	AT3G23280.1	XB3 ortholog 5 in Arabidopsis thaliana 	LOC_Os07g26490.1	"ankyrin repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155558.1.A1_a_at	A	A1TS	POPTR_0011s12460	POPTR_0011s12460 (11)	scaffold_11:15204231-15204583(+) (11)	NA	Q556Z3	Trafficking protein particle complex subunit 10	AT5G54440.1	CLUB 	LOC_Os12g36760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155602.1.A1_a_at	A	A1TS	POPTR_0016s01490	POPTR_0016s01490 (11)	scaffold_16:681775-682321(+) (11)	POPTR_0006s01290 (7)	A7XDQ9	"Probable beta-1,3-galactosyltransferase 20"	AT4G21060.2	Galactosyltransferase family protein 	LOC_Os08g03670.1	"galactosyltransferase family protein, putative, expressed"	Medtr2g022300.1	"Glycosyl transferase, family 31; Arginase/agmatinase/formiminoglutamase; Concanavalin A-like lectin/glucanase "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity||GO:0005529|sugar binding	GO:0016020|membrane
PtpAffx.155607.1.A1_s_at	A	A1TS	POPTR_0905s00195	POPTR_0905s00195 (11)	scaffold_905:1384-1492(+) (11)	NA	NA	NA	AT5G35930.1	AMP-dependent synthetase and ligase family protein 	LOC_Os06g02160.4	"AMP-binding enzyme family protein, expressed"	Medtr8g150990.1	AMP-dependent synthetase and ligase; Acyl carrier protein-like; Quinonprotein alcohol dehydrogenase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155629.1.S1_at	A	A1TS	POPTR_0012s03340	POPTR_0012s03340 (10)	scaffold_12:2650680-2652572(+) (10)	NA	Q14684	Ribosomal RNA processing protein 1 homolog B	AT5G20600.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). "	LOC_Os04g56350.1	"nucleolar protein,Nop52 containing protein, expressed"	Medtr8g147770.1	"Nucleolar, Nop52 "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	"GO:0030688|""preribosome, small subunit precursor"""
PtpAffx.155633.1.S1_at	A	A1TS	POPTR_0001s25260	POPTR_0001s25260 (9)	scaffold_1:24424568-24425015(-) (9)	NA	O04856	Serine/threonine-protein phosphatase PP1 isozyme 1	AT2G29400.1	type one protein phosphatase 1 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.155638.1.S1_at	A	A1TS	POPTR_0012s13470	POPTR_0012s13470 (10)	scaffold_12:13612678-13613500(+) (10)	NA	Q63055	ADP-ribosylation factor-related protein 1	AT5G52210.2	GTP-binding protein 1 	LOC_Os03g27450.1	"ADP-ribosylation factor, putative, expressed"	Medtr5g035450.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.155642.1.S1_at	A	A1TS	POPTR_0005s09150	POPTR_0005s09150 (10)	scaffold_5:6396049-6396324(-) (10)	NA	P54697	Myosin-J heavy chain	AT3G19960.1	myosin 1 	LOC_Os10g34710.1	"myosin-2 heavy chain, non muscle, putative, expressed"	Medtr1g046530.1	"IQ calmodulin-binding region; Myosin head, motor region "	NA	GO:0003774|motor activity||GO:0005524|ATP binding	GO:0016459|myosin complex
PtpAffx.155671.1.S1_at	A	A1TS	POPTR_0002s01140	POPTR_0002s01140 (11)	scaffold_2:609337-609912(-) (11)	NA	NA	NA	AT5G42330.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155671.2.A1_at	A	A1TA	POPTR_0002s01140	POPTR_0002s01140 (9)	scaffold_2:609526-609837(+) (10)	NA	NA	NA	AT5G42330.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155681.1.S1_a_at	A	A1MS	POPTR_0009s06610	POPTR_0009s06610 (11)	scaffold_9:6362432-6362630(-) (11)	NA	NA	NA	AT3G08490.1	"BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1); Has 161 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g11710.1	expressed protein	Medtr3g040230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155681.1.S1_at	A	A1TS	POPTR_0009s06610	POPTR_0009s06610 (11)	scaffold_9:6361424-6362391(-) (11)	NA	NA	NA	AT3G08490.1	"BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1); Has 161 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g11710.1	expressed protein	Medtr3g040230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155681.2.S1_at	A	A1MS	POPTR_0009s06610	POPTR_0009s06610 (11)	scaffold_9:6362152-6362426(-) (11)	NA	NA	NA	AT3G08490.1	"BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 2 (TAIR:AT3G24600.1); Has 161 Blast hits to 158 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g11710.1	expressed protein	Medtr3g040230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155705.1.S1_s_at	A	A1TS	POPTR_0007s14070	POPTR_0007s14070 (11)	scaffold_7:13989626-13990023(-) (11)	NA	Q755P0	Protein AF-9 homolog	AT5G45600.2	YEATS family protein 	LOC_Os06g04580.1	"transcription factor TFIIF, putative, expressed"	Medtr5g021870.1	"Glycoside hydrolase, family 5; YEATS "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	NA	GO:0005634|nucleus
PtpAffx.155706.1.S1_at	A	A1TS	POPTR_0008s15580	POPTR_0008s15580 (11)	scaffold_8:10349459-10349596(-) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT3G22750.1	Protein kinase superfamily protein 	LOC_Os03g43760.1	"protein kinase domain containing protein, expressed"	Medtr8g125440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.155720.1.S1_s_at	A	A1TS	POPTR_0008s12820	POPTR_0008s12820 (11)	scaffold_8:8315649-8316200(-) (11)	NA	NA	NA	AT1G70950.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr3g137120.2	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15575.1.S1_s_at	A	A1TS	POPTR_0014s18740	POPTR_0014s18740 (11)	scaffold_14:16109518-16109754(-) (11)	NA	Q86UA1	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155765.1.S1_s_at	A	A1TS	POPTR_0014s13600	POPTR_0014s13600 (11)	scaffold_14:9988835-9989023(-) (11)	NA	NA	NA	AT1G52140.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits to 114 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g70500.1	expressed protein	Medtr7g099480.1	"disease resistance gene, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155773.1.S1_s_at	A	A1TS	POPTR_0010s15150	POPTR_0010s15150 (10)	scaffold_10:14499366-14499913(-) (10)	NA	Q9LSP9	Chitinase-like protein 2	AT3G16920.1	chitinase-like protein 2 	LOC_Os09g32080.2	"CHIT13 - Chitinase family protein precursor, expressed"	Medtr2g038810.1	"Glycoside hydrolase, family 19 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
PtpAffx.155797.1.S1_at	A	A1TS	POPTR_0004s17500	POPTR_0004s17500 (11)	scaffold_4:17684610-17684994(+) (11)	NA	NA	NA	AT2G21180.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g14570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155868.1.S1_s_at	A	A1TS	POPTR_0006s14090	POPTR_0006s14090 (11)	scaffold_6:11398913-11399336(+) (11)	NA	Q84QC2	Ethylene-responsive transcription factor ERF017	AT1G19210.1	Integrase-type DNA-binding superfamily protein 	LOC_Os08g35240.1	AP2 domain containing protein	Medtr2g050000.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.155898.1.S1_at	A	A1TS	POPTR_0014s17170	POPTR_0014s17170 (10)	scaffold_14:13332942-13333524(+) (10)	NA	Q6INU7	Putative ferric-chelate reductase 1	AT3G07570.1	Cytochrome b561/ferric reductase transmembrane with DOMON related domain 	LOC_Os01g67030.1	"auxin-responsive protein, putative, expressed"	AC233651_15.1	DOMON; Cytochrome b561 / ferric reductase transmembrane AC233651.1 46198-48399 H EGN_Mt090430 200	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006548|histidine catabolic process	GO:0004500|dopamine beta-monooxygenase activity	NA
PtpAffx.155905.1.S1_at	A	A1TS	POPTR_0008s06610	POPTR_0008s06610 (10)	scaffold_8:3942308-3942756(-) (11)	NA	NA	NA	AT2G40000.1	ortholog of sugar beet HS1 PRO-1 2 	LOC_Os01g63690.1	"hs1, putative, expressed"	Medtr3g093280.1	"Hs1pro-1, C-terminal; Hs1pro-1, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155942.1.S1_at	A	A2TS	POPTR_0006s28810	POPTR_0006s28810 (11)//POPTR_0018s03560 (9)	scaffold_18:3087889-3088886(-) (9)//scaffold_6:26401877-26402882(-) (11)	NA	Q9SV21	Coatomer subunit beta-1	AT4G31480.2	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138720.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
PtpAffx.155946.1.S1_at	A	A1TS	POPTR_0006s09660	POPTR_0006s09660 (11)	scaffold_6:7100924-7101550(+) (10)	POPTR_0016s11740 (7)	Q9N2I9	Mitochondrial uncoupling protein 3	AT3G54110.1	plant uncoupling mitochondrial protein 1 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155976.1.S1_at	A	A1TS	POPTR_0001s35990	POPTR_0001s35990 (11)	scaffold_1:34450923-34451404(+) (11)	NA	P27879	18.1 kDa class I heat shock protein (Fragment)	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g022470.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.155977.1.S1_at	A	A1TS	POPTR_0191s00210	POPTR_0191s00210 (10)	scaffold_191:2202-5469(-) (10)	NA	Q93WU3	Chavicol O-methyltransferase	AT4G35160.1	O-methyltransferase family protein 	LOC_Os08g35310.1	"O-methyltransferase, putative"	Medtr5g082640.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
PtpAffx.156067.1.A1_s_at	A	A1TS	POPTR_0014s07350	POPTR_0014s07350 (11)	scaffold_14:5542991-5543681(+) (11)	NA	Q5R831	Adenosine 3'-phospho 5'-phosphosulfate transporter 2	AT1G12600.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os03g02670.2	"transporter family protein, putative, expressed"	Medtr7g083930.2	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156068.1.S1_at	A	A1TS	POPTR_0018s11760	POPTR_0018s11760 (10)	scaffold_18:12406088-12407197(+) (10)	NA	Q00IB6	RNA polymerase II C-terminal domain phosphatase-like 4	AT5G58003.1	C-terminal domain phosphatase-like 4 	LOC_Os05g32430.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr2g055870.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
PtpAffx.156073.1.A1_at	A	A1TS	POPTR_0013s11570	POPTR_0013s11570 (9)	scaffold_13:12217279-12218068(+) (9)	NA	Q9P4S5	"tRNA nucleotidyltransferase, mitochondrial"	AT1G22660.1	Polynucleotide adenylyltransferase family protein 	LOC_Os12g07350.1	"tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed"	Medtr5g023710.1	Polynucleotide adenylyltransferase region 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0016779|nucleotidyltransferase activity||GO:0003723|RNA binding	NA
PtpAffx.15609.2.S1_a_at	A	A1TS	POPTR_0001s09930	POPTR_0001s09930 (11)	scaffold_1:7666549-7667436(-) (11)	NA	P48488	Serine/threonine-protein phosphatase PP1	AT4G11240.1	Calcineurin-like metallo-phosphoesterase superfamily protein 	LOC_Os06g06880.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.156135.1.A1_s_at	A	A1TS	POPTR_0009s12430	POPTR_0009s12430 (11)	scaffold_9:10146335-10146797(-) (11)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT4G39080.1	vacuolar proton ATPase A3 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.156135.2.S1_at	A	A1TS	POPTR_0004s16750	POPTR_0004s16750 (11)	scaffold_4:17119018-17120588(-) (11)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT4G39080.1	vacuolar proton ATPase A3 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
PtpAffx.156161.1.A1_at	A	A1TS	POPTR_0001s15780	POPTR_0001s15780 (11)	scaffold_1:12604404-12605239(+) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G47470.1	Nodulin MtN21 /EamA-like transporter family protein 	LOC_Os06g01660.1	"integral membrane protein DUF6 domain containing protein, expressed"	Medtr8g105640.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.156186.1.S1_at	A	A1TS	POPTR_0009s04980	POPTR_0009s04980 (9)	scaffold_9:5192605-5193081(+) (9)	NA	Q9FVN0	Ammonium transporter 1 member 3	AT4G13510.1	ammonium transporter 1;1 	LOC_Os04g43070.1	"ammonium transporter protein, putative, expressed"	Medtr1g065600.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.156224.1.A1_at	A	A2MS	POPTR_0019s01470	POPTR_0019s01470 (11)//POPTR_0121s00200 (10)	scaffold_121:2652-2769(-) (10)//scaffold_19:1221330-1221447(+) (10)//scaffold_19:1292915-1293032(+) (11)	POPTR_0019s01350 (7)	Q84KJ6	Ammonium transporter 3 member 1	AT2G38290.1	ammonium transporter 2 	LOC_Os01g65000.1	"ammonium transporter protein, putative, expressed"	Medtr4g144250.1	Rh-like protein/ammonium transporter 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
PtpAffx.156247.1.S1_at	A	A1TS	POPTR_0006s06510	POPTR_0006s06510 (10)	scaffold_6:4708030-4710616(+) (11)	NA	NA	NA	AT5G52580.1	RabGAP/TBC domain-containing protein 	LOC_Os02g48000.2	"TBC domain containing protein, expressed"	Medtr8g121210.1	RabGAP/TBC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156265.1.S1_at	A	A1TS	POPTR_0006s15820	POPTR_0006s15820 (10)	scaffold_6:13470334-13470606(-) (10)	NA	Q9M1S8	Probable glutamate carboxypeptidase 2	AT5G19740.1	Peptidase M28 family protein 	LOC_Os01g54010.1	"peptidase, putative, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
PtpAffx.15627.1.S1_s_at	A	A1TS	POPTR_0017s04800	POPTR_0017s04800 (11)	scaffold_17:3704573-3704882(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.15627.2.S1_s_at	A	A1TS	POPTR_0017s04800	POPTR_0017s04800 (11)	scaffold_17:3703326-3703368(+) (11)	NA	Q6NQK2	NAC domain-containing protein 8	AT4G28500.1	NAC domain containing protein 73 	LOC_Os01g48130.2	"no apical meristem protein, putative, expressed"	Medtr2g018190.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.156271.1.S1_at	A	A1TS	POPTR_0001s22230	POPTR_0001s22230 (11)	scaffold_1:20867536-20869137(+) (11)	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT5G22050.2	Protein kinase superfamily protein 	LOC_Os07g06570.1	"receptor protein kinase CRINKLY4 precursor, putative, expressed"	Medtr2g104720.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156271.1.S1_s_at	A	A2TS	POPTR_0001s22230	POPTR_0001s22230 (11)//POPTR_0009s02090 (11)	scaffold_1:20868332-20869177(+) (11)//scaffold_9:2706782-2707513(+) (11)	NA	Q9FX99	Probable receptor-like protein kinase At1g49730	AT5G22050.2	Protein kinase superfamily protein 	LOC_Os07g06570.1	"receptor protein kinase CRINKLY4 precursor, putative, expressed"	Medtr2g104720.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156290.1.S1_at	A	A1TS	POPTR_0006s00760	POPTR_0006s00760 (11)	scaffold_6:399449-399560(+) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT4G16360.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os05g41220.1	"SNF1-related protein kinase regulatory subunit beta-1, putative, expressed"	Medtr5g095330.1	"SNF1-related protein kinase regulatory subunit beta-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156290.1.S1_s_at	A	A1TS	POPTR_0006s00760	POPTR_0006s00760 (11)	scaffold_6:399584-400639(+) (11)	NA	Q9SCY5	SNF1-related protein kinase regulatory subunit beta-2	AT4G16360.1	5'-AMP-activated protein kinase beta-2 subunit protein 	LOC_Os05g41220.1	"SNF1-related protein kinase regulatory subunit beta-1, putative, expressed"	Medtr5g095330.1	"SNF1-related protein kinase regulatory subunit beta-1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156310.1.S1_at	A	A1TS	POPTR_0011s01664	POPTR_0011s01664 (9)	scaffold_11:1179281-1179313(+) (9)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.1	expressed protein	Medtr6g076720.1	TIR; NB-ARC; AAA ATPase 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.156313.1.S1_s_at	A	A1TS	POPTR_0001s02020	POPTR_0001s02020 (11)	scaffold_1:1495894-1497132(-) (11)	NA	Q80Y84	Lysine-specific demethylase 5B	AT5G46910.1	Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein 	LOC_Os10g42690.1	"jmjC domain containing protein, expressed"	Medtr5g029270.1	"Transcription factor jumonji, jmjC; Transcription factor jumonji, JmjN "	NA	NA	GO:0005634|nucleus
PtpAffx.156315.1.S1_at	A	A1TS	POPTR_0014s07570	POPTR_0014s07570 (11)	scaffold_14:5686289-5687261(+) (11)	POPTR_0002s15740 (7)	P37225	"NAD-dependent malic enzyme 59 kDa isoform, mitochondrial"	AT4G00570.1	NAD-dependent malic enzyme 2 	LOC_Os10g35960.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g034840.1	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
PtpAffx.156340.1.S1_at	A	A1TS	POPTR_0013s15160	POPTR_0013s15160 (11)	scaffold_13:15197487-15197726(+) (11)	NA	O22932	CBL-interacting serine/threonine-protein kinase 11	AT2G30360.1	SOS3-interacting protein 4 	LOC_Os05g43840.1	"CAMK_KIN1/SNF1/Nim1_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g082950.1	Protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.156345.1.S1_at	A	A1MA	POPTR_0015s13740	POPTR_0015s13740 (10)	scaffold_15:13555031-13555504(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156354.1.S1_s_at	A	A1TS	POPTR_0016s10670	POPTR_0016s10670 (11)	scaffold_16:8947749-8953521(-) (11)	NA	Q03943	"Membrane-associated 30 kDa protein, chloroplastic"	AT1G65260.1	plastid transcriptionally active 4 	LOC_Os01g67000.1	"membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed"	Medtr4g092710.2	PspA/IM30 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15637.1.S1_at	A	A1TS	POPTR_0002s20240	POPTR_0002s20240 (11)	scaffold_2:16193529-16194503(+) (11)	NA	P93033	"Fumarate hydratase 1, mitochondrial"	AT2G47510.2	fumarase 1 	LOC_Os03g21950.1	"fumarate hydratase, mitochondrial precursor, putative, expressed"	Medtr1g107740.1	"Fumarate lyase; Fumarate hydratase, class II "	GO:0006099|tricarboxylic acid cycle	GO:0016829|lyase activity	NA
PtpAffx.156381.1.S1_at	A	A1TS	POPTR_0008s04160	POPTR_0008s04160 (10)	scaffold_8:2329030-2331016(-) (10)	NA	Q5M721	RNA pseudourine synthase 5	AT3G52260.2	Pseudouridine synthase family protein 	LOC_Os03g17920.2	"RNA pseudouridine synthase, putative, expressed"	Medtr1g121530.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.156393.1.S1_at	A	A1TS	POPTR_0006s12810	POPTR_0006s12810 (11)	scaffold_6:9978138-9978225(+) (11)	NA	P79769	Translin	AT2G37020.1	Translin family protein 	LOC_Os10g30640.1	"translin, putative, expressed"	NA	NA	NA	GO:0043565|sequence-specific DNA binding	NA
PtpAffx.1564.1.A1_at	A	A1TS	POPTR_0014s14690	POPTR_0014s14690 (11)	scaffold_14:10763172-10763296(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.1564.1.A1_s_at	A	A1TS	POPTR_0014s14690	POPTR_0014s14690 (11)	scaffold_14:10762960-10763550(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.1564.2.A1_s_at	A	A1TS	POPTR_0014s14690	POPTR_0014s14690 (11)	scaffold_14:10762977-10763550(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.156408.1.S1_at	A	A1TS	POPTR_0014s08310	POPTR_0014s08310 (11)	scaffold_14:6175631-6176510(+) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT4G00330.1	calmodulin-binding receptor-like cytoplasmic kinase 2 	LOC_Os03g05470.1	"tyrosine protein kinase domain containing protein, putative, expressed"	AC235567_9.1	"Serine/threonine protein kinase, active site AC235567.1 39723-36116 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15641.1.S1_s_at	A	A1MS	POPTR_0009s00940	POPTR_0009s00940 (11)	scaffold_9:1079095-1079712(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156415.1.S1_at	A	A1TS	POPTR_0014s04340	POPTR_0014s04340 (11)	scaffold_14:3401561-3402668(-) (11)	NA	Q9LPF6	Probable purine permease 11	AT1G44750.2	purine permease 11 	LOC_Os02g46380.2	"purine permease, putative, expressed"	Medtr7g092280.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156417.1.S1_at	A	A1TS	POPTR_0017s14390	POPTR_0017s14390 (11)	scaffold_17:14453306-14453853(-) (11)	NA	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570	AT1G13570.1	F-box/RNI-like superfamily protein 	LOC_Os02g33400.1	"OsFBL9 - F-box domain and LRR containing protein, expressed"	Medtr1g016390.1	FBD; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15642.1.S1_at	A	A1TS	POPTR_0005s22960	POPTR_0005s22960 (11)	scaffold_5:21811162-21811597(+) (11)	NA	NA	NA	AT3G52420.1	outer envelope membrane protein 7 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15642.2.S1_at	A	A1MS	POPTR_0002s05560	POPTR_0002s05560 (9)	scaffold_2:3643836-3644242(-) (9)	NA	NA	NA	AT3G52420.1	outer envelope membrane protein 7 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156428.1.S1_at	A	A1TS	POPTR_0007s12760	POPTR_0007s12760 (11)	scaffold_7:13023684-13024123(+) (11)	NA	Q9FL03	Scarecrow-like protein 4	AT5G66770.1	GRAS family transcription factor 	LOC_Os03g51330.1	"GRAS family transcription factor domain containing protein, expressed"	Medtr4g107060.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15644.1.A1_at	A	A1TS	POPTR_0002s24930	POPTR_0002s24930 (11)	scaffold_2:22136641-22136700(-) (11)	NA	Q06915	"Probable glucan endo-1,3-beta-glucosidase A6"	AT3G07320.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os09g32550.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g012760.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.156448.1.S1_s_at	A	A1TS	POPTR_0010s10910	POPTR_0010s10910 (11)	scaffold_10:11288046-11291409(-) (11)	NA	Q5REY7	UBX domain-containing protein 7	AT1G14570.1	UBX domain-containing protein 	LOC_Os04g57520.1	"UBX domain-containing protein, putative, expressed"	AC229689_1.1	UBX; UAS; Thioredoxin-like fold AC229689.5 4995-12311 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156460.1.S1_at	A	A1TS	POPTR_0017s02840	POPTR_0017s02840 (10)	scaffold_17:2037005-2037523(+) (10)	NA	NA	NA	AT5G16610.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g12120.1	"no apical meristem protein, putative, expressed"	Medtr5g085900.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15649.1.A1_at	A	A1TS	POPTR_0003s10640	POPTR_0003s10640 (11)	scaffold_3:11556538-11557783(+) (11)	NA	Q5KII2	Branchpoint-bridging protein	AT5G51300.3	splicing factor-related 	LOC_Os04g31620.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.15649.2.S1_s_at	A	A1TS	POPTR_0001s00850	POPTR_0001s00850 (11)	scaffold_1:706889-707860(-) (11)	NA	Q5KII2	Branchpoint-bridging protein	AT5G51300.3	splicing factor-related 	LOC_Os04g31620.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr2g005410.2	KH 	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.156493.1.S1_at	A	A1TS	POPTR_0006s26830	POPTR_0006s26830 (11)	scaffold_6:24913455-24913583(-) (11)	NA	P29518	"Protein brittle-1, chloroplastic/amyloplastic"	AT4G32400.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40050.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g136730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156493.1.S1_s_at	A	A1TS	POPTR_0006s26830	POPTR_0006s26830 (11)	scaffold_6:24913112-24913426(-) (11)	NA	P29518	"Protein brittle-1, chloroplastic/amyloplastic"	AT4G32400.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40050.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g136730.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156497.1.S1_s_at	A	A1TS	POPTR_0015s14830	POPTR_0015s14830 (11)	scaffold_15:14299769-14300137(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
PtpAffx.156581.1.S1_at	A	A1TS	POPTR_0010s14220	POPTR_0010s14220 (11)	scaffold_10:13891232-13892777(-) (11)	NA	Q8K4H1	Probable arylformamidase	AT1G26120.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g49440.1	"serine esterase, putative, expressed"	AC233657_30.1	"Carboxylesterase, type B AC233657.1 159050-155204 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156593.2.S1_a_at	A	A1TS	POPTR_0014s13510	POPTR_0014s13510 (11)	scaffold_14:9945207-9946023(-) (11)//scaffold_14:9945521-9945691(-) (10)	NA	NA	NA	AT4G02880.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03290.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g16440.1	"CUE domain containing protein, expressed"	Medtr1g086690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156604.1.S1_at	A	A1TS	POPTR_0005s16550	POPTR_0005s16550 (11)	scaffold_5:13429768-13430795(-) (11)	NA	Q8VYI9	Non-specific lipid-transfer protein-like protein At5g64080	AT4G08670.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g09230.1	"LTPL69 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g078840.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156607.1.S1_s_at	A	A1TS	POPTR_0005s04130	POPTR_0005s04130 (11)	scaffold_5:2725163-2728200(+) (11)	NA	Q9ASR4	Branched-chain-amino-acid aminotransferase-like protein 2	AT5G27410.2	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os03g24460.2	"aminotransferase domain containing protein, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.156608.1.S1_at	A	A1TS	POPTR_0010s20070	POPTR_0010s20070 (11)	scaffold_10:17818037-17818522(-) (11)	NA	P44797	Adenylosuccinate lyase	AT1G36280.1	L-Aspartase-like family protein 	LOC_Os03g19930.1	"adenylosuccinate lyase, putative, expressed"	Medtr7g111520.1	Fumarate lyase; Adenylosuccinate lyase 	GO:0044281|small molecule metabolic process||GO:0006188|IMP biosynthetic process	"GO:0004018|""N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"""	NA
PtpAffx.156614.1.S1_at	A	A1TS	POPTR_0010s10260	POPTR_0010s10260 (11)	scaffold_10:10813999-10815015(-) (11)	NA	NA	NA	AT1G14410.1	ssDNA-binding transcriptional regulator 	LOC_Os06g05350.1	"whirly transcription factor domain containing protein, expressed"	Medtr5g039580.1	ssDNA-binding transcriptional regulator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156619.1.S1_at	A	A2TS	POPTR_0017s07640	POPTR_0017s07640 (10)//POPTR_0565s00200 (9)	scaffold_17:5942065-5943058(+) (10)//scaffold_565:10155-11084(-) (9)	NA	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156620.1.S1_s_at	A	A1TS	POPTR_0005s16630	POPTR_0005s16630 (11)	scaffold_5:13612427-13612972(-) (11)	NA	O94387	Uncharacterized ATP-dependent helicase C29A10.10c	AT4G30100.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g20500.1	"tRNA-splicing endonuclease positive effector-related, putative"	Medtr8g024570.1	"tRNA-splicing endonuclease positive effector-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156629.1.S1_at	A	A1TS	POPTR_0013s07950	POPTR_0013s07950 (11)	scaffold_13:6879364-6879789(+) (11)	POPTR_0019s08310 (8)	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os01g41210.1	"transposon protein, putative, unclassified, expressed"	Medtr7g143350.1	"Plant MuDR transposase; Zinc finger, SWIM-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.156635.1.S1_at	A	A1TS	POPTR_0005s01430	POPTR_0005s01430 (9)	scaffold_5:937437-938634(-) (9)	NA	O23403	"PsbP domain-containing protein 1, chloroplastic"	AT4G15510.1	Photosystem II reaction center PsbP family protein 	LOC_Os12g37710.1	"PsbP, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
PtpAffx.156641.1.S1_at	A	A1TS	POPTR_0012s07480	POPTR_0012s07480 (10)	scaffold_12:8395989-8396676(-) (10)	NA	P49914	5-formyltetrahydrofolate cyclo-ligase	AT5G13050.1	5-formyltetrahydrofolate cycloligase 	LOC_Os07g39070.1	"5-formyltetrahydrofolate cyclo-ligase, putative, expressed"	NA	NA	GO:0009396|folic acid and derivative biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0030272|5-formyltetrahydrofolate cyclo-ligase activity	NA
PtpAffx.156647.1.S1_s_at	A	A1TS	POPTR_0002s09820	POPTR_0002s09820 (11)	scaffold_2:7035922-7036269(-) (11)	NA	Q9C9Q8	Probable pectin methyltransferase QUA2	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr5g072950.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.156655.1.S1_at	A	A1TS	POPTR_0019s11190	POPTR_0019s11190 (11)	scaffold_19:12568793-12569687(+) (11)	NA	Q94F09	Protein disulfide-isomerase 5-2	AT1G35620.1	PDI-like 5-2 	LOC_Os04g35290.1	"OsPDIL5-2  protein disulfide isomerase PDIL5-2, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.156696.1.S1_a_at	A	A1TS	POPTR_0008s14690	POPTR_0008s14690 (9)	scaffold_8:9753573-9753993(+) (11)	NA	NA	NA	AT1G14270.1	CAAX amino terminal protease family protein 	LOC_Os09g24670.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.1567.1.A1_a_at	A	A1TS	POPTR_0014s11270	POPTR_0014s11270 (11)	scaffold_14:8394173-8394770(+) (11)	NA	Q9NPF5	DNA methyltransferase 1-associated protein 1	AT2G47210.1	myb-like transcription factor family protein 	LOC_Os05g46330.1	"MYB family transcription factor, putative, expressed"	Medtr7g133340.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156703.1.S1_at	A	A1MS	POPTR_0005s17860	POPTR_0005s17860 (11)	scaffold_5:15614913-15615334(-) (11)	NA	P27140	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.2	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr5g075060.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.156703.2.S1_a_at	A	A1TS	POPTR_0005s17860	POPTR_0005s17860 (11)	scaffold_5:15616541-15616969(-) (11)	NA	P27140	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.2	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr5g075060.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.156707.1.S1_s_at	A	A1TS	POPTR_0010s17430	POPTR_0010s17430 (11)	scaffold_10:16006303-16006488(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT5G15270.1	RNA-binding KH domain-containing protein 	LOC_Os03g25970.2	"KH domain-containing protein, putative, expressed"	Medtr6g013130.2	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.156758.1.S1_s_at	A	A1TS	POPTR_0003s06690	POPTR_0003s06690 (11)	scaffold_3:8218371-8219370(+) (11)	NA	NA	NA	AT1G72390.1	CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). 	LOC_Os10g25200.1	expressed protein	Medtr8g025570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156764.1.S1_at	A	A1TS	POPTR_0003s19430	POPTR_0003s19430 (11)	scaffold_3:18158744-18160762(-) (11)	NA	Q9LHK1	"Nudix hydrolase 16, mitochondrial"	AT3G12600.1	nudix hydrolase homolog 16 	LOC_Os03g59580.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g043270.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.15679.1.S1_at	A	A1TS	POPTR_0008s04100	POPTR_0008s04100 (10)	scaffold_8:2281892-2282377(-) (10)	NA	Q94KB7	MLO-like protein 6	AT1G61560.1	Seven transmembrane MLO family protein 	LOC_Os03g03700.1	"MLO domain containing protein, putative, expressed"	Medtr2g110820.1	Mlo-related protein 	GO:0008219|cell death	NA	GO:0016021|integral to membrane
PtpAffx.156795.1.S1_at	A	A1TS	POPTR_0006s06100	POPTR_0006s06100 (9)	scaffold_6:4336854-4337803(+) (9)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.2	glucuronidase 3 	LOC_Os06g08090.2	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
PtpAffx.156807.1.S1_at	A	A1TS	POPTR_0019s03530	POPTR_0019s03530 (11)	scaffold_19:3614648-3614992(+) (11)	POPTR_0013s04350 (6)	O07051	L-allo-threonine aldolase	AT1G08630.4	threonine aldolase 1 	LOC_Os04g43650.2	"L-allo-threonine aldolase, putative, expressed"	Medtr1g093690.1	"Aromatic amino acid beta-eliminating lyase/threonine aldolase; Polynucleotidyl transferase, Ribonuclease H fold; ; "	GO:0006520|cellular amino acid metabolic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process	GO:0016829|lyase activity	NA
PtpAffx.156811.1.S1_at	A	A1TS	POPTR_0009s16700	POPTR_0009s16700 (11)	scaffold_9:12633269-12634541(+) (11)	NA	NA	NA	AT4G38370.1	Phosphoglycerate mutase family protein 	LOC_Os04g14760.1	"phosphoglycerate mutase, putative, expressed"	Medtr5g106670.1	Phosphoglycerate mutase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156826.1.S1_s_at	A	A1TS	POPTR_0003s13340	POPTR_0003s13340 (11)	scaffold_3:13738695-13740078(+) (11)	NA	Q9SUR3	Reticulon-like protein B1	AT4G23630.1	VIRB2-interacting protein 1 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
PtpAffx.156848.1.S1_s_at	A	A1TS	POPTR_0004s23120	POPTR_0004s23120 (11)	scaffold_4:21901132-21902112(-) (11)	NA	A8ID74	Ribosome biogenesis protein BOP1 homolog	AT2G40360.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g25440.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr2g005810.1	"Calcium-binding EF-hand; WD40-like; BOP1, N-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0005634|nucleus
PtpAffx.156852.1.S1_s_at	A	A1TS	POPTR_0006s10250	POPTR_0006s10250 (11)	scaffold_6:7665712-7666155(-) (11)	NA	P48620	"Omega-3 fatty acid desaturase, chloroplastic"	AT5G05580.1	fatty acid desaturase 8 	LOC_Os03g18070.1	"omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed"	Medtr4g013060.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.156861.1.S1_at	A	A1TS	POPTR_0010s00500	POPTR_0010s00500 (9)	scaffold_10:255245-255798(-) (9)	NA	P13940	Late embryogenesis abundant protein D-29	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156864.1.S1_at	A	A1TS	POPTR_0004s18610	POPTR_0004s18610 (9)	scaffold_4:18447557-18448628(-) (9)	POPTR_0009s14150 (6)	Q39108	"Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic"	AT4G38460.1	geranylgeranyl reductase 	LOC_Os02g44780.3	"polyprenyl synthetase, putative, expressed"	AC146550_1.1	Polyprenyl synthetase AC146550.40 4-1850 E EGN_Mt090430 200	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.156876.1.S1_s_at	A	A1TS	POPTR_0004s17850	POPTR_0004s17850 (11)	scaffold_4:17893916-17894482(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22340.1	UDP-glucosyl transferase 85A7 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156891.1.S1_at	A	A1TS	POPTR_0019s02260	POPTR_0019s02260 (10)	scaffold_19:2104994-2107007(-) (10)	NA	Q8T4E1	Putative GPI-anchor transamidase	AT1G08750.3	Peptidase C13 family 	LOC_Os02g12740.1	"GPI-anchor transamidase precursor, putative, expressed"	Medtr2g073970.1	"Peptidase C13, legumain "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004197|cysteine-type endopeptidase activity	NA
PtpAffx.156899.1.S1_at	A	A1TS	POPTR_0006s07670	POPTR_0006s07670 (11)	scaffold_6:5612197-5612325(-) (11)	NA	NA	NA	AT2G19080.1	metaxin-related 	LOC_Os06g07160.1	expressed protein	Medtr8g129480.1	"glutathione S-transferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156901.1.S1_at	A	A1TS	POPTR_0001s11550	POPTR_0001s11550 (10)	scaffold_1:8975539-8977475(-) (10)	NA	O43290	U4/U6.U5 tri-snRNP-associated protein 1	AT5G16780.1	SART-1 family 	LOC_Os02g30730.2	"SART-1 family protein, putative, expressed"	Medtr1g100420.1	SART-1 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156902.1.S1_at	A	A1TS	POPTR_0008s11900	POPTR_0008s11900 (11)	scaffold_8:7640800-7641413(+) (11)	NA	Q9LUA2	Ethylene-responsive transcription factor ERF119	AT3G25890.2	Integrase-type DNA-binding superfamily protein 	LOC_Os09g13940.2	"AP2 domain containing protein, expressed"	AC233660_41.1	Pathogenesis-related transcriptional factor and ERF AC233660.2 151624-147758 E EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.156916.1.S1_at	A	A1TS	POPTR_0010s20580	POPTR_0010s20580 (10)	scaffold_10:18101501-18103558(+) (10)	NA	Q54TS4	Protein YIPF1 homolog	AT2G39805.1	Integral membrane Yip1 family protein 	LOC_Os05g38180.4	"Yip1 domain containing protein, expressed"	Medtr5g088310.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156940.1.S1_s_at	A	A1TS	POPTR_2535s00200	POPTR_2535s00200 (11)	scaffold_2535:553-1053(+) (11)	NA	Q8LPQ9	Flowering time control protein FPA	AT2G43410.4	RNA binding 	LOC_Os09g34070.2	"RNA recognition motif containing protein, expressed"	Medtr4g092490.1	RNA-binding region RNP-1 (RNA recognition motif); SPOC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156942.1.S1_at	A	A1TS	POPTR_0004s01070	POPTR_0004s01070 (10)	scaffold_4:537617-539657(-) (10)	NA	Q00624	L-ascorbate oxidase homolog	AT4G22010.1	SKU5  similar 4 	LOC_Os06g46500.1	"monocopper oxidase, putative, expressed"	Medtr8g147000.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.156945.1.S1_at	A	A1TS	POPTR_0015s10550	POPTR_0015s10550 (11)	scaffold_15:11444427-11444507(-) (11)	NA	A2YBX5	Protein kinase G11A	AT2G26700.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g07940.1	"AGC_PVPK_like_kin82y.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g119560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.156945.1.S1_s_at	A	A1TS	POPTR_0015s10550	POPTR_0015s10550 (11)	scaffold_15:11443879-11444441(-) (11)	NA	A2YBX5	Protein kinase G11A	AT2G26700.1	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os01g07940.1	"AGC_PVPK_like_kin82y.3 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr8g119560.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.156953.1.S1_s_at	A	A1TS	POPTR_0014s18570	POPTR_0014s18570 (11)	scaffold_14:15900329-15900783(+) (11)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT2G20300.1	Protein kinase superfamily protein 	LOC_Os02g57080.1	"serine/threonine-protein kinase, putative, expressed"	Medtr7g117650.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.156958.1.S1_at	A	A1TS	POPTR_0005s23570	POPTR_0005s23570 (9)	scaffold_5:22298251-22299333(-) (9)	NA	Q94A20	BI1-like protein	AT1G03070.2	Bax inhibitor-1 family protein 	LOC_Os03g53400.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr1g083870.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.156973.1.S1_at	A	A1TS	POPTR_0003s04070	POPTR_0003s04070 (11)	scaffold_3:4720298-4720403(-) (11)	NA	O81488	PHD finger protein At5g26210	AT2G02470.1	alfin-like 6 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15698.1.S1_at	A	A1TS	POPTR_0011s16870	POPTR_0011s16870 (9)	scaffold_11:18611553-18612102(+) (9)	NA	O65351	Subtilisin-like protease	AT5G59810.1	Subtilase family protein 	LOC_Os09g30250.1	"OsSub58 - Putative Subtilisin homologue, expressed"	Medtr3g107040.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
PtpAffx.156996.1.S1_at	A	A1TS	POPTR_0001s10280	POPTR_0001s10280 (11)	scaffold_1:7968730-7969186(+) (11)	NA	Q9SUQ3	Probable inactive receptor kinase At4g23740	AT4G23740.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g12390.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr5g009760.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.157018.2.S1_s_at	A	A1TS	POPTR_0006s24090	POPTR_0006s24090 (11)	scaffold_6:22774058-22774480(+) (11)	NA	Q11011	Puromycin-sensitive aminopeptidase	AT4G33090.1	aminopeptidase M1 	LOC_Os02g12650.1	"puromycin-sensitive aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
PtpAffx.15702.1.A1_at	A	A1TS	POPTR_0002s18520	POPTR_0002s18520 (11)	scaffold_2:14420780-14421497(+) (11)	NA	Q9ULE6	Paladin	AT3G62010.1	unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 553 Blast hits to 216 proteins in 93 species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi - 58; Plants - 108; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). 	LOC_Os03g38970.1	"metal ion binding protein, putative, expressed"	Medtr7g134390.1	[2Fe-2S]-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157025.1.S1_at	A	A1TS	POPTR_0008s20330	POPTR_0008s20330 (11)	scaffold_8:14083949-14084497(-) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT5G18930.1	Adenosylmethionine decarboxylase family protein 	LOC_Os05g04990.1	"adenosylmethionine decarboxylase, putative, expressed"	Medtr8g140130.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
PtpAffx.157035.1.S1_s_at	A	A1TS	POPTR_0003s15760	POPTR_0003s15760 (11)	scaffold_3:15475710-15476182(-) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G50120.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr5g093610.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157042.1.S1_at	A	A1TS	POPTR_0002s19380	POPTR_0002s19380 (11)	scaffold_2:15337682-15340160(+) (11)	NA	O04425	Flowering time control protein FCA	AT2G47310.1	flowering time control protein-related / FCA gamma-related 	LOC_Os09g03610.4	"flowering time control protein FCA, putative, expressed"	Medtr8g136920.1	RNA-binding region RNP-1 (RNA recognition motif); WW/Rsp5/WWP 	NA	GO:0003676|nucleic acid binding||GO:0005515|protein binding	NA
PtpAffx.157048.1.S1_at	A	A1TS	POPTR_0003s07520	POPTR_0003s07520 (11)	scaffold_3:9080113-9080459(+) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT4G16650.1	O-fucosyltransferase family protein 	LOC_Os04g46570.1	"growth regulator related protein, putative, expressed"	Medtr8g105620.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157050.1.S1_at	A	A1TS	POPTR_0008s06900	POPTR_0008s06900 (11)	scaffold_8:4155874-4155924(+) (11)	NA	P0A522	Probable ATP-dependent Clp protease ATP-binding subunit	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157050.1.S1_s_at	A	A1TS	POPTR_0008s06900	POPTR_0008s06900 (11)	scaffold_8:4155994-4156245(+) (11)	NA	P0A522	Probable ATP-dependent Clp protease ATP-binding subunit	AT2G29970.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157051.1.S1_at	A	A2TS	POPTR_0001s09710	POPTR_0003s13090 (11)//POPTR_0001s09710 (11)	scaffold_1:7436699-7437060(+) (11)//scaffold_3:13495816-13496175(+) (11)	NA	NA	NA	AT1G63850.1	BTB/POZ domain-containing protein 	LOC_Os04g49060.1	"H-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed"	Medtr8g094180.1	PRLI-interacting factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157054.1.S1_at	A	A1MS	POPTR_0001s23720	POPTR_0001s23720 (10)	scaffold_1:23124162-23124599(+) (10)	NA	NA	NA	AT2G44360.1	unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g38080.1	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157058.1.S1_at	A	A1TS	POPTR_0014s05790	POPTR_0014s05790 (9)	scaffold_14:4348033-4349572(+) (9)	NA	A5YKK6	CCR4-NOT transcription complex subunit 1	AT1G02080.2	transcription regulators 	LOC_Os10g40780.1	"CCR4-Not complex component, Not1domain containing protein, expressed"	Medtr8g005620.1	"CCR4-Not complex component, Not1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157059.1.S1_s_at	A	A1TS	POPTR_0014s18990	POPTR_0014s18990 (11)	scaffold_14:16664327-16664835(+) (11)	NA	Q9FLP6	Small ubiquitin-related modifier 2	AT5G55160.1	small ubiquitin-like modifier 2 	LOC_Os01g68950.1	"ubiquitin family domain containing protein, expressed"	AC225519_6.1	Ubiquitin; Inorganic pyrophosphatase AC225519.5 35386-39197 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157082.1.S1_s_at	A	A4TS	POPTR_0003s01880	POPTR_0003s01950 (11)//POPTR_0003s01880 (11)//POPTR_0003s01940 (11)//POPTR_0003s01920 (10)	scaffold_3:1755871-1756123(-) (11)//scaffold_3:1801340-1801588(-) (10)//scaffold_3:1818414-1818666(-) (11)//scaffold_3:1838460-1838712(-) (11)	NA	Q4U4N4	Interferon-induced GTP-binding protein Mx2	AT1G60500.1	Dynamin related protein 4C 	LOC_Os03g15420.1	"dynamin family protein, putative, expressed"	Medtr4g136240.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.157099.1.S1_at	A	A1TS	POPTR_0003s13800	POPTR_0003s13800 (10)	scaffold_3:14078368-14078901(+) (10)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008810.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157113.1.S1_s_at	A	A1TS	POPTR_0001s12510	POPTR_0001s12510 (11)	scaffold_1:9711083-9711438(-) (11)	NA	B0CAZ0	Chaperone protein dnaJ	AT5G59610.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g60790.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g117200.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.157114.1.S1_at	A	A1TS	POPTR_0017s12630	POPTR_0017s12630 (11)	scaffold_17:12828541-12828838(-) (11)	NA	Q8YM56	Chaperone protein ClpB 2	AT5G15450.1	casein lytic proteinase B3 	LOC_Os03g31300.1	"chaperone protein clpB 1, putative, expressed"	Medtr6g014150.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.157124.1.S1_at	A	A1TS	POPTR_0019s15350	POPTR_0019s15350 (11)	scaffold_19:15877193-15878901(-) (11)	NA	B4PS83	Cohesin loading complex subunit SCC4 homolog	AT5G51340.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g28010.1	expressed protein	Medtr5g083820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157131.1.S1_at	A	A1TS	POPTR_0012s04230	POPTR_0012s04230 (10)	scaffold_12:3466655-3468308(+) (10)	NA	Q8VWG7	TPR repeat-containing thioredoxin TDX	AT3G17880.1	tetraticopeptide domain-containing thioredoxin 	LOC_Os09g23650.1	"FAM10 family protein, putative, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.157133.1.S1_s_at	A	A1TS	POPTR_0007s06860	POPTR_0007s06860 (11)	scaffold_7:5197660-5198194(-) (11)	NA	A4GYX4	Putative membrane protein ycf1	AT4G39420.2	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g08750.2	expressed protein	Medtr4g141160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157134.1.S1_s_at	A	A1TS	POPTR_0008s11850	POPTR_0008s11850 (11)	scaffold_8:7591982-7592214(-) (11)	NA	NA	NA	AT1G13360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04010.1	expressed protein	Medtr4g158300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157136.1.S1_at	A	A1TS	POPTR_0008s17420	POPTR_0008s17420 (9)	scaffold_8:11690051-11690601(+) (9)	NA	Q9LIR6	"Beta-amylase 1, chloroplastic"	AT3G23920.1	beta-amylase 1 	LOC_Os03g04770.1	"beta-amylase, putative, expressed"	Medtr5g013790.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
PtpAffx.157137.1.S1_s_at	A	A1TS	POPTR_0005s10830	POPTR_0005s10830 (11)	scaffold_5:7795232-7796116(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G35780.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.157141.1.S1_s_at	A	A1TS	POPTR_0015s05610	POPTR_0015s05610 (11)	scaffold_15:5955833-5956830(-) (11)	POPTR_0012s00900 (8)//POPTR_0012s03320 (7)	Q54NM9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3	AT1G34130.1	staurosporin and temperature sensitive 3-like b 	LOC_Os04g57890.1	"oligosaccharyl transferase, putative, expressed"	Medtr6g089790.1	"Oligosaccharyl transferase, STT3 subunit "	GO:0006486|protein amino acid glycosylation	GO:0004576|oligosaccharyl transferase activity	GO:0016020|membrane
PtpAffx.157144.1.S1_at	A	A1TS	POPTR_0017s01990	POPTR_0017s01990 (9)	scaffold_17:1452552-1452913(-) (9)	POPTR_0004s07860 (6)	NA	NA	AT3G03210.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 59 Blast hits to 59 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os10g39400.1	expressed protein	Medtr5g084830.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157147.1.S1_at	A	A1TS	POPTR_0017s04470	POPTR_0017s04470 (9)	scaffold_17:3449082-3450806(+) (9)	NA	Q9FKW0	Putative E3 ubiquitin-protein ligase RING1a	AT5G44280.1	RING 1A 	LOC_Os05g41795.1	"zinc finger C3HC4 type family protein, putative, expressed"	Medtr4g125080.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157148.1.S1_at	A	A1TS	POPTR_0005s23470	POPTR_0005s23470 (11)	scaffold_5:22213729-22214490(+) (11)	NA	NA	NA	AT4G04614.1	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g42430.1	expressed protein	Medtr1g084010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157171.1.S1_at	A	A1TS	POPTR_0002s03790	POPTR_0002s03790 (11)	scaffold_2:2353899-2354369(+) (11)	NA	P04844	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	AT4G21150.3	ribophorin II (RPN2) family protein 	LOC_Os01g68324.2	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0071212|subsynaptic reticulum||GO:0008250|oligosaccharyltransferase complex
PtpAffx.157185.1.S1_a_at	A	A2TS	POPTR_0001s02860	POPTR_0001s02860 (11)//POPTR_0003s08670 (11)	scaffold_1:2259614-2260241(+) (11)//scaffold_3:10071601-10072235(-) (11)	NA	Q42581	"Ribose-phosphate pyrophosphokinase 1, chloroplastic"	AT2G35390.2	Phosphoribosyltransferase family protein 	LOC_Os02g03540.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g103080.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.1572.1.S1_at	A	A1TS	POPTR_0008s08030	POPTR_0008s08030 (9)	scaffold_8:4962302-4962678(+) (9)	NA	Q0VCZ3	YTH domain family protein 2	AT1G79270.1	evolutionarily conserved C-terminal region 8 	LOC_Os01g48790.1	"YT521-B-like family domain containing protein, expressed"	Medtr2g085380.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157201.1.S1_at	A	A1TS	POPTR_0005s02730	POPTR_0005s02730 (11)	scaffold_5:1739627-1740887(-) (11)	NA	Q9FFH3	Zinc finger protein NUTCRACKER	AT3G50700.1	indeterminate(ID)-domain 2 	LOC_Os02g31890.1	ZOS2-08 - C2H2 zinc finger protein	Medtr7g130150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.157204.1.S1_s_at	A	A1MS	POPTR_0013s00960	POPTR_0013s00960 (10)	scaffold_13:501876-502721(+) (10)	NA	Q5EA50	Rab9 effector protein with kelch motifs	AT1G74150.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os01g19480.1	"kelch motif family protein, putative, expressed"	Medtr7g138990.1	"Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157213.1.S1_at	A	A1TS	POPTR_0012s09450	POPTR_0012s09450 (11)	scaffold_12:10477112-10477627(-) (11)	NA	Q9Y2W2	WW domain-binding protein 11	AT5G62640.1	proline-rich family protein 	LOC_Os07g09510.1	"retrotransposon protein, putative, unclassified, expressed"	AC233677_4.1	"Formin-like protein 3, related AC233677.2 22162-26524 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	NA
PtpAffx.157223.1.S1_at	A	A1TS	POPTR_0025s00420	POPTR_0025s00420 (10)	scaffold_25:173126-173546(-) (10)	NA	Q3E9A0	"Probable anion transporter 6, chloroplastic"	AT5G20380.1	phosphate transporter 4;5 	LOC_Os09g38410.1	"sialin, putative, expressed"	Medtr8g122090.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157241.1.S1_at	A	A1TS	POPTR_0001s06240	POPTR_0001s06240 (11)	scaffold_1:4812455-4813072(+) (11)	NA	NA	NA	AT3G54500.2	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g31360.4	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15726.1.S1_at	A	A1TS	POPTR_0014s02530	POPTR_0014s02530 (9)	scaffold_14:2097971-2098327(+) (9)	NA	Q8LC30	Ethylene-responsive transcription factor RAP2-1	AT1G46768.1	related to AP2 1 	LOC_Os04g55520.1	"AP2 domain containing protein, expressed"	Medtr3g147420.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.15726.2.S1_at	A	A1TS	POPTR_0002s12550	POPTR_0002s12550 (10)	scaffold_2:9324265-9324808(+) (10)	NA	Q8LC30	Ethylene-responsive transcription factor RAP2-1	AT1G46768.1	related to AP2 1 	LOC_Os04g55520.1	"AP2 domain containing protein, expressed"	Medtr3g147420.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.157269.1.S1_at	A	A1TS	POPTR_0006s27080	POPTR_0006s27080 (10)	scaffold_6:25097750-25098545(-) (10)	NA	NA	NA	AT4G32295.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 39 Blast hits to 39 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15727.2.S1_at	A	A1TS	POPTR_0015s11590	POPTR_0015s11590 (10)	scaffold_15:12157233-12157344(+) (10)	NA	NA	NA	AT3G48860.2	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157282.1.S1_at	A	A1TS	POPTR_0004s18450	POPTR_0004s18450 (10)	scaffold_4:18343694-18344851(-) (10)	NA	P37034	Uncharacterized transporter lpg1691	AT1G31830.1	Amino acid permease family protein 	LOC_Os03g37984.2	"amino acid permease family protein, putative, expressed"	Medtr5g026930.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157284.1.S1_at	A	A1TS	POPTR_0006s24710	POPTR_0006s24710 (11)	scaffold_6:23295324-23296343(+) (11)	POPTR_0018s05050 (7)	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	AT1G17720.1	"Protein phosphatase 2A, regulatory subunit PR55 "	LOC_Os02g13110.2	"serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed"	Medtr2g121640.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157300.1.S1_s_at	A	A1TS	POPTR_0008s07250	POPTR_0008s07250 (11)	scaffold_8:4416024-4416310(-) (11)	NA	P56286	Eukaryotic translation initiation factor 2 subunit alpha	AT2G40290.1	Eukaryotic translation initiation factor 2 subunit 1 	LOC_Os03g18510.1	expressed protein	Medtr3g094730.1	"RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005850|eukaryotic translation initiation factor 2 complex
PtpAffx.157303.1.S1_at	A	A1TS	POPTR_0004s14230	POPTR_0004s14230 (11)	scaffold_4:14708425-14709416(+) (11)	NA	Q9C810	PHD finger protein At1g33420	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g65600.1	"PHD-finger domain containing protein, putative, expressed"	Medtr4g041260.1	"Protein of unknown function UPF0054; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157312.1.S1_at	A	A1TS	POPTR_0001s32670	POPTR_0001s32670 (11)	scaffold_1:30959422-30959939(-) (11)	NA	NA	NA	AT5G43490.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g63040.1	expressed protein	Medtr3g105200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15733.1.S1_a_at	A	A1TS	POPTR_0001s34310	POPTR_0001s34310 (9)	scaffold_1:32479663-32479887(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157333.1.S1_s_at	A	A1TS	POPTR_0006s05600	POPTR_0006s05600 (11)	scaffold_6:3947103-3947634(-) (11)	NA	Q3EAI1	Transcription factor bHLH60	AT3G57800.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g32510.4	"BHLH transcription factor, putative, expressed"	Medtr1g071420.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.157346.1.S1_s_at	A	A1TS	POPTR_0002s11320	POPTR_0002s11320 (11)	scaffold_2:8370708-8371548(+) (11)	NA	NA	NA	AT1G10020.1	Protein of unknown function (DUF1005) 	LOC_Os07g04150.1	"stress-induced protein, putative, expressed"	Medtr5g005600.1	Protein of unknown function DUF1005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157368.1.S1_s_at	A	A2TS	POPTR_0001s15980	POPTR_0003s07230 (11)//POPTR_0001s15980 (11)	scaffold_1:12806510-12806906(-) (11)//scaffold_3:8815195-8815593(+) (11)	NA	O64765	Probable UDP-N-acetylglucosamine pyrophosphorylase	AT1G31070.2	N-acetylglucosamine-1-phosphate uridylyltransferase 1 	LOC_Os04g52370.1	"UTP--glucose-1-phosphate uridylyltransferase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.157374.1.S1_a_at	A	A1TS	POPTR_0011s08360	POPTR_0011s08360 (11)	scaffold_11:9700662-9701807(-) (11)//scaffold_4:5140027-5141211(+) (11)	POPTR_0004s06390 (8)	Q8IYT4	Katanin p60 ATPase-containing subunit A-like 2	AT2G34560.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g48270.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g165730.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.157376.1.S1_at	A	A1TS	POPTR_0002s20740	POPTR_0002s20740 (10)	scaffold_2:16829504-16830136(-) (10)	POPTR_0014s12560 (7)	Q505J9	ATPase family AAA domain-containing protein 1	AT1G02890.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr1g108580.1	"Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central region; SMAD/FHA "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.157378.1.S1_at	A	A1MS	POPTR_0002s17130	POPTR_0002s17130 (11)	scaffold_2:12927326-12927737(-) (11)	NA	Q9M367	Beclin-1-like protein	AT3G61710.1	AUTOPHAGY 6 	LOC_Os01g48920.1	"beclin-1, putative, expressed"	Medtr3g020350.2	Autophagy protein Apg6 	GO:0006914|autophagy	NA	NA
PtpAffx.157379.1.S1_at	A	A1TS	POPTR_0019s00750	POPTR_0019s00750 (10)	scaffold_19:501279-502047(-) (10)	NA	P81395	Myb-related protein 330	AT2G16720.1	myb domain protein 7 	LOC_Os05g35500.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157387.1.S1_at	A	A1TS	POPTR_0010s18140	POPTR_0010s18140 (11)	scaffold_10:16502716-16504891(-) (11)	NA	NA	NA	AT1G79420.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157389.1.S1_at	A	A1TS	POPTR_0002s17740	POPTR_0002s17740 (10)	scaffold_2:13564616-13566072(+) (10)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT2G46710.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os02g45600.1	"rhoGAP domain containing protein, expressed"	Medtr8g029150.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.157390.1.S1_at	A	A1TS	POPTR_0004s21200	POPTR_0004s21200 (10)	scaffold_4:20431573-20433550(+) (10)	NA	Q1E6U9	Protein transport protein SEC24	AT2G27460.1	sec23/sec24 transport family protein 	LOC_Os05g37120.1	"sec23/Sec24 zinc finger family protein, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
PtpAffx.157395.1.S1_s_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5418331-5418661(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
PtpAffx.1574.1.A1_at	A	A1TS	POPTR_0006s20540	POPTR_0006s20540 (10)	scaffold_6:19551621-19552042(-) (10)	NA	Q9SAK5	Myb family transcription factor APL	AT5G06800.1	myb-like HTH transcriptional regulator family protein 	LOC_Os04g56990.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr7g111700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157406.1.S1_at	A	A1TS	POPTR_0018s14730	POPTR_0018s14730 (11)	scaffold_18:14825489-14825785(-) (11)	NA	Q93Z08	"Glucan endo-1,3-beta-glucosidase 6"	AT5G58090.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g04670.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.157411.1.S1_s_at	A	A1TS	POPTR_0008s03990	POPTR_0008s03990 (10)	scaffold_8:2199519-2199728(+) (10)	NA	Q8VX13	Protein disulfide isomerase-like 1-3	AT3G54960.1	PDI-like 1-3 	LOC_Os02g01010.1	"OsPDIL1-4  protein disulfide isomerase PDIL1-4, expressed"	Medtr4g081690.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin domain 2 	GO:0045454|cell redox homeostasis	NA	NA
PtpAffx.157470.2.A1_a_at	A	A1TS	POPTR_0012s06760	POPTR_0012s06760 (11)	scaffold_12:7233958-7235560(-) (11)	NA	O82796	"Phosphoserine phosphatase, chloroplastic"	AT1G18640.2	3-phosphoserine phosphatase 	LOC_Os11g41160.3	"phosphoserine phosphatase, chloroplast precursor, putative, expressed"	Medtr3g036690.1	"Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase subfamily IB, PSPase-like "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.157471.1.S1_s_at	A	A1TS	POPTR_0009s08490	POPTR_0009s08490 (11)	scaffold_9:7754118-7754931(-) (11)	NA	Q04212	D-arabinose 1-dehydrogenase	AT4G33670.1	NAD(P)-linked oxidoreductase superfamily protein 	LOC_Os12g29760.1	"oxidoreductase, aldo/keto reductase family protein, putative, expressed"	Medtr4g121930.1	Aldo/keto reductase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.157477.1.S1_at	A	A1TS	POPTR_0015s05050	POPTR_0015s05050 (10)	scaffold_15:5351453-5351736(+) (10)	NA	Q9FX31	Homeobox-leucine zipper protein HDG11	AT1G73360.1	homeodomain GLABROUS 11 	LOC_Os06g10600.1	"homeobox and START domains containing protein, putative, expressed"	Medtr7g083690.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.15748.1.S1_at	A	A1TS	POPTR_0008s02970	POPTR_0008s02970 (10)	scaffold_8:1557190-1557619(+) (10)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g44590.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr7g124420.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.15748.2.S1_at	A	A1TS	POPTR_0008s02970	POPTR_0008s02970 (11)	scaffold_8:1557764-1557859(+) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g44590.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr7g124420.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.157486.1.S1_at	A	A1TS	POPTR_0015s10840	POPTR_0015s10840 (11)	scaffold_15:11633784-11634997(+) (11)	NA	O23034	Ubiquitin-like modifier-activating enzyme 5	AT1G05350.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g30310.1	"ThiF family domain containing protein, putative, expressed"	Medtr3g150540.1	UBA/THIF-type NAD/FAD binding fold 	NA	GO:0003824|catalytic activity	NA
PtpAffx.15749.1.S1_at	A	A1TS	POPTR_0018s04570	POPTR_0018s04570 (11)	scaffold_18:3855782-3856261(-) (11)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157493.1.S1_at	A	A1TS	POPTR_0015s11750	POPTR_0015s11750 (9)	scaffold_15:12294673-12295784(+) (10)	NA	Q9FH50	"APO protein 3, mitochondrial"	AT5G61930.2	Arabidopsis thaliana protein of unknown function (DUF794) 	LOC_Os07g40920.1	"APO, putative, expressed"	Medtr5g080800.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15752.1.S1_at	A	A1TS	POPTR_0004s20320	POPTR_0004s20320 (11)	scaffold_4:19890843-19891277(-) (11)	NA	P73387	Ycf60-like protein	AT5G55710.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os02g49470.1	"tic20 protein-related, putative, expressed"	Medtr5g103380.1	"Ycf60-like protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157532.1.S1_at	A	A1TS	POPTR_0016s01600	POPTR_0016s01600 (9)	scaffold_16:721136-721169(-) (10)//scaffold_16:725804-725837(-) (9)	POPTR_0016s01610 (7)	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21760.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157532.1.S1_s_at	A	A4TS	POPTR_0016s01570	POPTR_0016s01570 (11)//POPTR_0016s01610 (10)//POPTR_0016s01600 (10)//POPTR_0016s01590 (9)	scaffold_16:713702-714150(-) (11)//scaffold_16:721122-726165(-) (11)//scaffold_16:726152-726238(-) (9)//scaffold_16:732177-732274(+) (10)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT3G21760.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os07g32010.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157533.1.S1_at	A	A1TS	POPTR_0008s17260	POPTR_0008s17260 (11)	scaffold_8:11591234-11591583(+) (11)	NA	Q8DGC4	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	AT1G48520.1	GLU-ADT subunit B 	LOC_Os11g34210.2	"aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed"	Medtr5g067700.1	"GatB, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	"GO:0016884|""carbon-nitrogen ligase activity, with glutamine as amido-N-donor"""	NA
PtpAffx.157536.1.S1_at	A	A1TS	POPTR_0009s09240	POPTR_0009s09240 (11)	scaffold_9:8245735-8245869(-) (11)	NA	Q9XJ35	"ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic"	AT1G49970.1	CLP protease proteolytic subunit 1 	LOC_Os05g51450.1	"OsClp8 - Putative Clp protease homologue, expressed"	Medtr1g135150.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
PtpAffx.157550.1.S1_at	A	A1TS	POPTR_0011s10090	POPTR_0011s10090 (10)	scaffold_11:12604972-12608057(+) (10)	NA	Q9FVJ3	ADP-ribosylation factor GTPase-activating protein AGD12	AT4G21160.4	Calcium-dependent ARF-type GTPase activating protein family 	LOC_Os06g40704.3	"stromal membrane-associated protein, putative, expressed"	Medtr4g136810.1	C2; Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
PtpAffx.157551.1.S1_s_at	A	A1TS	POPTR_0015s03480	POPTR_0015s03480 (11)	scaffold_15:3035946-3037828(+) (11)	NA	Q9ZPQ3	D-aminoacyl-tRNA deacylase	AT2G03800.1	D-aminoacyl-tRNA deacylases 	LOC_Os08g25140.1	"ethanol tolerance protein GEKO1, putative, expressed"	Medtr8g077420.1	Protein of unknown function DUF516 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15756.1.A1_at	A	A1TS	POPTR_0010s18930	POPTR_0010s18930 (11)	scaffold_10:17017138-17017362(+) (11)	NA	NA	NA	AT3G10980.1	PLAC8 family protein 	LOC_Os05g39730.1	"SAG20, putative, expressed"	Medtr5g091160.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157564.1.S1_s_at	A	A1TS	POPTR_0015s08020	POPTR_0015s08020 (11)	scaffold_15:9302446-9303218(-) (11)	NA	Q869R9	Myb-like protein J	AT1G19000.2	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr5g038100.1	"Zinc finger, CCHC-type; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157569.1.S1_s_at	A	A1TS	POPTR_0004s11240	POPTR_0004s11240 (11)	scaffold_4:9868436-9869259(+) (11)	NA	Q86KZ2	General transcription factor IIH subunit 2	AT1G05055.1	general transcription factor II H2 	LOC_Os04g42990.1	"suppressor of stem-loop protein 1, putative, expressed"	Medtr7g106470.1	"von Willebrand factor, type A; Zinc finger, C2H2-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.157606.1.S1_s_at	A	A1TS	POPTR_0002s08790	POPTR_0002s08790 (11)	scaffold_2:6178306-6179950(+) (11)	POPTR_0005s16060 (8)	Q8W486	DUF246 domain-containing protein At1g04910	AT1G38131.1	O-fucosyltransferase family protein 	LOC_Os12g07540.1	"growth regulator related protein, putative, expressed"	Medtr5g065110.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157607.1.S1_at	A	A1TS	POPTR_0005s22730	POPTR_0005s22730 (11)	scaffold_5:21622664-21623133(-) (11)	NA	NA	NA	AT1G06660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30820.2); Has 166 Blast hits to 144 proteins in 35 species: Archae - 0; Bacteria - 17; Metazoa - 13; Fungi - 20; Plants - 104; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os03g56590.1	expressed protein	Medtr5g098090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157610.1.S1_at	A	A1TS	POPTR_0004s21180	POPTR_0004s21180 (10)	scaffold_4:20411863-20412636(-) (10)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
PtpAffx.157613.1.S1_at	A	A1TS	POPTR_0014s07040	POPTR_0014s07040 (10)	scaffold_14:5315274-5315515(-) (10)	NA	Q8VYD9	"CRS2-associated factor 1, mitochondrial"	AT4G31010.1	RNA-binding CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os08g07790.1	"CRS2-associated factor 2, mitochondrial precursor, putative, expressed"	Medtr7g083490.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
PtpAffx.157617.1.S1_s_at	A	A1TS	POPTR_0018s00760	POPTR_0018s00760 (11)	scaffold_18:654791-655645(-) (11)	NA	NA	NA	AT2G25737.1	Sulfite exporter TauE/SafE family protein 	LOC_Os09g17600.3	"membrane protein, putative, expressed"	AC225518_19.2	Protein of unknown function DUF81 AC225518.12 64125-68524 F EGN_Mt090430 200	NA	NA	GO:0016021|integral to membrane
PtpAffx.157621.1.S1_s_at	A	A1TS	POPTR_0012s14150	POPTR_0012s14150 (11)	scaffold_12:14145454-14145808(+) (11)	NA	Q8GW72	Alpha-L-fucosidase 1	AT2G28100.1	alpha-L-fucosidase 1 	LOC_Os09g34920.1	"glycosyl hydrolase family 29, putative, expressed"	Medtr1g130150.1	"Glycoside hydrolase, family 29 (alpha-L-fucosidase) "	GO:0005975|carbohydrate metabolic process||GO:0007155|cell adhesion	GO:0004560|alpha-L-fucosidase activity	NA
PtpAffx.157624.1.S1_at	A	A1TS	POPTR_0010s05520	POPTR_0010s05520 (10)	scaffold_10:6965653-6967250(-) (10)	NA	Q9XGA0	"Ribose-phosphate pyrophosphokinase 3, mitochondrial"	AT1G10700.1	phosphoribosyl pyrophosphate (PRPP) synthase 3 	LOC_Os01g52530.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g034640.1	Ribose-phosphate pyrophosphokinase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
PtpAffx.157625.1.S1_at	A	A1TS	POPTR_0018s09570	POPTR_0018s09570 (10)	scaffold_18:10507460-10509020(+) (10)	NA	Q9LVC8	"Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial"	AT5G57300.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g74520.1	"methyltransferase domain containing protein, putative, expressed"	Medtr4g005810.1	UbiE/COQ5 methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.157633.1.S1_at	A	A1TS	POPTR_0003s05060	POPTR_0003s05060 (11)	scaffold_3:6252842-6253365(-) (11)	NA	Q0WVL7	Golgin candidate 5	AT1G79830.3	golgin candidate 5 	LOC_Os05g48620.1	"tRNA-binding arm, putative, expressed"	Medtr2g122720.1	"tRNA-binding arm; t-snare, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157639.1.S1_s_at	A	A1TS	POPTR_0003s15620	POPTR_0003s15620 (11)	scaffold_3:15363735-15363976(+) (11)	NA	NA	NA	AT4G20300.2	Protein of unknown function (DUF1639) 	LOC_Os01g48830.2	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157645.1.S1_at	A	A1MS	POPTR_0008s20800	POPTR_0008s20800 (11)	scaffold_8:14786795-14787259(-) (11)	NA	Q5R824	Carbohydrate kinase domain-containing protein	AT5G19150.2	pfkB-like carbohydrate kinase family protein 	LOC_Os11g17610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15766.2.S1_s_at	A	A1TS	POPTR_0014s07720	POPTR_0014s07720 (11)	scaffold_14:5789239-5789555(+) (11)	NA	Q9V3R6	tRNA-specific adenosine deaminase 1	AT1G01760.1	adenosine deaminases;RNA binding;RNA binding;adenosine deaminases 	LOC_Os04g58690.1	"tRNA-specific adenosine deaminase 1, putative, expressed"	Medtr6g031090.1	Adenosine deaminase/editase 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004000|adenosine deaminase activity||GO:0003723|RNA binding	NA
PtpAffx.157667.1.S1_s_at	A	A1TS	POPTR_0002s05170	POPTR_0002s05170 (11)	scaffold_2:3350509-3350887(+) (11)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1577.1.S1_at	A	A1TS	POPTR_0015s05520	POPTR_0015s05520 (11)	scaffold_15:5854980-5855319(-) (11)	NA	NA	NA	AT4G27750.1	binding 	LOC_Os06g03850.1	"impaired sucrose induction 1, putative, expressed"	Medtr4g107850.1	"impaired sucrose induction 1-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157708.1.S1_at	A	A1TS	POPTR_0014s15920	POPTR_0014s15920 (11)	scaffold_14:12004194-12004843(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G35670.1	IQ-domain 33 	LOC_Os06g40850.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr5g092000.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157708.1.S1_s_at	A	A1TS	POPTR_0014s15920	POPTR_0014s15920 (11)	scaffold_14:12004071-12004727(-) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT5G35670.1	IQ-domain 33 	LOC_Os06g40850.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr5g092000.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157710.1.A1_at	A	A1MA	POPTR_0016s03080	POPTR_0016s03080 (9)	scaffold_16:1541530-1542069(+) (9)	POPTR_0016s03090 (6)	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.157717.1.S1_at	A	A1TS	POPTR_0025s00750	POPTR_0025s00750 (11)	scaffold_25:407297-407452(+) (11)	NA	Q3EAR7	Probable glycosyltransferase At3g42180	AT3G42180.1	Exostosin family protein 	LOC_Os07g09050.1	"exostosin family protein, putative, expressed"	Medtr8g121620.1	Exostosin-like 	NA	NA	GO:0016021|integral to membrane
PtpAffx.157722.1.S1_at	A	A1TS	POPTR_0012s04500	POPTR_0012s04500 (11)	scaffold_12:3788701-3789472(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g18050.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr7g106150.1	"Cell division protein FtsZ; Peptidase S26A, signal peptidase I "	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.157729.1.S1_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (10)	scaffold_18:10244214-10246032(+) (10)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157729.1.S1_s_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (11)	scaffold_18:10244676-10245956(+) (11)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15773.1.A1_s_at	A	A1TS	POPTR_0014s06530	POPTR_0014s06530 (11)	scaffold_14:4955565-4956152(-) (11)	NA	Q9FQ09	ATP-dependent DNA helicase 2 subunit KU80	AT1G48050.1	Ku80 family protein 	LOC_Os03g63920.1	"KAP-2, putative, expressed"	Medtr4g024770.1	Ku 	GO:0006303|double-strand break repair via nonhomologous end joining||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004003|ATP-dependent DNA helicase activity	GO:0005634|nucleus
PtpAffx.157735.1.S1_at	A	A1TS	POPTR_0019s05890	POPTR_0019s05890 (11)	scaffold_19:6309883-6310722(+) (11)	NA	Q9FKJ0	F-box/kelch-repeat protein At5g60570	AT5G60570.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g52830.2	"OsFBK15 - F-box domain and kelch repeat containing protein, expressed"	Medtr2g110510.1	"Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157739.1.S1_at	A	A1TS	POPTR_0006s07780	POPTR_0006s07780 (11)	scaffold_6:5691554-5693560(+) (11)	NA	B9HBA8	"Biotin carboxylase 1, chloroplastic"	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.157739.1.S1_s_at	A	A2TS	POPTR_0006s07780	POPTR_0006s07780 (11)//POPTR_0018s14250 (11)	scaffold_18:14502072-14504911(-) (11)//scaffold_6:5691490-5694437(+) (11)	NA	B9HBA8	"Biotin carboxylase 1, chloroplastic"	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
PtpAffx.157768.1.S1_s_at	A	A1TS	POPTR_0003s06210	POPTR_0003s06210 (11)	scaffold_3:7672743-7673151(+) (11)	NA	NA	NA	AT3G13980.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink). 	LOC_Os03g07920.1	expressed protein	Medtr3g139450.1	"Putative serine rich protein, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15778.1.S1_at	A	A1TS	POPTR_0002s13100	POPTR_0002s13100 (11)	scaffold_2:9754105-9754627(-) (11)	NA	Q9SX97	Dof zinc finger protein DOF1.6	AT1G47655.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.157780.1.S1_at	A	A1TS	POPTR_0009s08990	POPTR_0009s08990 (10)	scaffold_9:8081942-8081977(-) (10)	NA	Q6YXH8	Cyclin-D4-1	AT1G70210.1	CYCLIN D1;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr5g033980.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157780.1.S1_s_at	A	A1TS	POPTR_0009s08990	POPTR_0009s08990 (11)	scaffold_9:8081963-8082625(-) (11)	NA	Q6YXH8	Cyclin-D4-1	AT1G70210.1	CYCLIN D1;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr5g033980.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157788.1.S1_s_at	A	A1TS	POPTR_0007s13080	POPTR_0007s13080 (11)	scaffold_7:13251691-13253314(-) (11)	NA	NA	NA	AT2G18245.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g04110.1	expressed protein	Medtr5g020580.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1578.1.S1_a_at	A	A1TS	POPTR_0006s05070	POPTR_0006s05070 (11)	scaffold_6:3523452-3523641(-) (11)	NA	Q8VZ42	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11	AT2G41835.1	"zinc finger (C2H2 type, AN1-like) family protein "	LOC_Os07g38240.1	"ZOS7-05 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1578.1.S1_at	A	A1TS	POPTR_0006s05070	POPTR_0006s05070 (11)	scaffold_6:3523257-3523773(-) (11)	NA	Q8VZ42	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11	AT2G41835.1	"zinc finger (C2H2 type, AN1-like) family protein "	LOC_Os07g38240.1	"ZOS7-05 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.1578.2.S1_at	A	A1TS	POPTR_0006s05070	POPTR_0006s05070 (10)	scaffold_6:3522346-3523510(-) (10)	NA	Q8VZ42	Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11	AT2G41835.1	"zinc finger (C2H2 type, AN1-like) family protein "	LOC_Os07g38240.1	"ZOS7-05 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.157804.1.S1_at	A	A1TS	POPTR_0004s16830	POPTR_0004s16830 (9)	scaffold_4:17181857-17184163(+) (9)	NA	P53800	Squalene synthase	AT4G34640.1	squalene synthase 1 	LOC_Os03g59040.2	"squalene synthetase, putative, expressed"	Medtr4g097000.1	Terpenoid synthase 	GO:0009058|biosynthetic process	GO:0016740|transferase activity	NA
PtpAffx.157807.1.S1_s_at	A	A1TS	POPTR_0008s03220	POPTR_0008s03220 (11)	scaffold_8:1687869-1688184(-) (11)	NA	NA	NA	AT5G04390.1	C2H2-type zinc finger family protein 	LOC_Os02g57790.1	ZOS2-19 - C2H2 zinc finger protein	Medtr4g076150.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.157814.1.S1_s_at	A	A1MS	POPTR_0017s12700	POPTR_0017s12700 (11)	scaffold_17:12889726-12890187(+) (11)	NA	NA	NA	AT3G49645.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os07g16140.1	"FAD binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157820.1.S1_s_at	A	A1TS	POPTR_0004s01530	POPTR_0004s01530 (11)	scaffold_4:883121-883256(-) (11)	NA	Q9ZSA2	Calcium-dependent protein kinase 21	AT4G04720.1	calcium-dependent protein kinase 21 	LOC_Os07g33110.4	"CAMK_CAMK_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g146720.1	Tyrosine protein kinase; Calcium-binding EF-hand 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.157822.1.S1_at	A	A1TS	POPTR_0010s20240	POPTR_0010s20240 (10)	scaffold_10:17916099-17916674(+) (10)	NA	NA	NA	AT5G05840.1	Protein of unknown function (DUF620) 	LOC_Os03g16060.1	expressed protein	Medtr3g092680.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157825.1.S1_at	A	A1MS	POPTR_0018s13250	POPTR_0018s13250 (9)	scaffold_18:13642498-13642877(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157827.1.S1_s_at	A	A1MS	POPTR_0017s02590	POPTR_0017s02590 (11)	scaffold_17:1876254-1876692(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157830.1.S1_at	A	A1TS	POPTR_0004s00480	POPTR_0004s00480 (9)	scaffold_4:169128-169160(+) (9)	NA	Q9ZWQ8	"Plastid-lipid-associated protein, chloroplastic"	AT4G22240.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os09g04790.1	"PAP fibrillin family domain containing protein, expressed"	Medtr2g029130.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.157830.1.S1_s_at	A	A1TS	POPTR_0004s00480	POPTR_0004s00480 (11)	scaffold_4:169153-170726(+) (11)	NA	Q9ZWQ8	"Plastid-lipid-associated protein, chloroplastic"	AT4G22240.1	Plastid-lipid associated protein PAP / fibrillin family protein 	LOC_Os09g04790.1	"PAP fibrillin family domain containing protein, expressed"	Medtr2g029130.1	PAP fibrillin 	NA	GO:0005198|structural molecule activity	NA
PtpAffx.15785.1.S1_at	A	A1TS	POPTR_0006s07130	POPTR_0006s07130 (10)	scaffold_6:5120687-5121001(-) (10)	NA	NA	NA	AT4G29850.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os02g07980.1	expressed protein	Medtr2g043270.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15785.2.A1_a_at	A	A2TS	POPTR_0018s13340	POPTR_0018s13340 (11)//POPTR_0006s07130 (9)	scaffold_18:13697664-13697711(-) (11)//scaffold_6:5121704-5121738(-) (9)	NA	NA	NA	AT4G29850.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os02g07980.1	expressed protein	Medtr8g130380.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15785.2.A1_s_at	A	A1TS	POPTR_0018s13340	POPTR_0018s13340 (11)	scaffold_18:13696768-13697676(-) (11)	NA	NA	NA	AT4G29850.1	Eukaryotic protein of unknown function (DUF872) 	LOC_Os02g07980.1	expressed protein	Medtr8g130380.1	"Protein of unknown function DUF872, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157860.1.S1_at	A	A1TS	POPTR_0004s08800	POPTR_0004s08800 (10)	scaffold_4:7398201-7398756(+) (10)	POPTR_0005s14390 (6)	Q9CAL8	Proline-rich receptor-like protein kinase PERK13	AT5G37790.1	Protein kinase superfamily protein 	LOC_Os03g13820.1	"protein kinase family protein, putative, expressed"	Medtr3g143050.1	Protein kinase; UspA 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.157864.1.S1_s_at	A	A1TS	POPTR_0001s24540	POPTR_0001s24540 (11)	scaffold_1:23793237-23793529(+) (11)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.1	OBF-binding protein 3 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.157864.2.S1_at	A	A1TS	POPTR_0009s03490	POPTR_0009s03490 (10)	scaffold_9:4117875-4118354(+) (10)	NA	Q9M2U1	Dof zinc finger protein DOF3.6	AT3G55370.2	OBF-binding protein 3 	LOC_Os03g16850.1	"dof zinc finger domain containing protein, putative"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.157889.1.S1_a_at	A	A1TS	POPTR_0014s07750	POPTR_0014s07750 (11)	scaffold_14:5811052-5811193(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157889.1.S1_at	A	A1TS	POPTR_0014s07750	POPTR_0014s07750 (11)	scaffold_14:5810656-5811066(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157889.2.S1_at	A	A1TS	POPTR_0014s07750	POPTR_0014s07750 (11)	scaffold_14:5811145-5811386(+) (11)	NA	Q6DN14	Multiple C2 and transmembrane domain-containing protein 1	AT4G11610.1	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 	LOC_Os04g58720.1	"anthranilate phosphoribosyltransferase, putative, expressed"	Medtr5g010490.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157898.1.S1_at	A	A1TS	POPTR_0018s08050	POPTR_0018s08050 (11)	scaffold_18:8834262-8836114(-) (11)	NA	Q9VR91	Probable E3 ubiquitin-protein ligase HERC2	AT5G11580.1	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os01g52630.1	"regulator of chromosome condensation, putative, expressed"	Medtr3g130590.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15790.1.S1_at	A	A1TS	POPTR_0007s12130	POPTR_0007s12130 (10)	scaffold_7:12460327-12461126(+) (10)	NA	O64827	Histone-lysine N-methyltransferase SUVR5	AT2G23740.2	nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding 	LOC_Os02g47900.1	"SET domain protein SDG117, putative, expressed"	Medtr5g018800.1	"SET-related region; Zinc finger, C2H2-type; Pre-SET; Histone H3-K9 methyltransferase "	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.157928.1.S1_at	A	A1TS	POPTR_0002s00660	POPTR_0002s00660 (11)	scaffold_2:293452-294383(-) (11)	NA	Q4R7R1	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0006694|steroid biosynthetic process||GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity	NA
PtpAffx.157928.2.S1_at	A	A1MS	POPTR_0002s00670	POPTR_0002s00670 (10)	scaffold_2:299123-299177(-) (10)	NA	Q4R7R1	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0006694|steroid biosynthetic process||GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity	NA
PtpAffx.157928.2.S1_s_at	A	A1TS	POPTR_0002s00670	POPTR_0002s00670 (11)	scaffold_2:299464-299633(-) (11)	NA	Q4R7R1	Short-chain dehydrogenase/reductase family 42E member 1	AT2G33630.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g48460.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	Medtr3g138960.1	3-beta hydroxysteroid dehydrogenase/isomerase; Reticulon 	GO:0006694|steroid biosynthetic process||GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003854|3-beta-hydroxy-delta5-steroid dehydrogenase activity	NA
PtpAffx.157935.1.S1_at	A	A2TS	POPTR_0017s12080	POPTR_0017s12080 (11)//POPTR_0004s12120 (9)	scaffold_17:12237491-12237907(+) (11)//scaffold_4:11057425-11057837(-) (9)	NA	Q93ZL5	Dof zinc finger protein DOF5.2	AT5G39660.2	cycling DOF factor 2 	LOC_Os03g07360.1	expressed protein	Medtr7g010180.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.15797.1.S1_at	A	A1TS	POPTR_0003s21480	POPTR_0003s21480 (11)	scaffold_3:19632284-19632723(+) (11)	NA	NA	NA	AT5G19875.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g27330.1	"oxidoreductase/ transition metal ion binding protein, putative, expressed"	Medtr5g091690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157974.1.A1_at	A	A1TS	POPTR_0014s10560	POPTR_0014s10560 (9)	scaffold_14:7877554-7879050(+) (9)	NA	P55230	"Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic"	AT1G27680.1	ADPGLC-PPase large subunit 	LOC_Os07g13980.1	"glucose-1-phosphate adenylyltransferase large subunit, putative, expressed"	Medtr7g134380.1	"Nucleotidyl transferase; Glucose-1-phosphate adenylyltransferase, GlgD subunit "	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
PtpAffx.157975.1.A1_at	A	A1TS	POPTR_0014s09250	POPTR_0014s09250 (11)	scaffold_14:6870062-6870374(+) (11)	NA	NA	NA	AT4G01037.1	Ubiquitin carboxyl-terminal hydrolase family protein 	LOC_Os05g49610.1	"ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed"	Medtr3g105870.1	"Protein of unknown function DUF860, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157983.1.A1_at	A	A1TS	POPTR_0009s14720	POPTR_0009s14720 (11)	scaffold_490:1106-1610(+) (11)//scaffold_9:11471518-11472026(+) (11)	NA	Q93ZB9	Fatty acyl-CoA reductase 3	AT4G33790.1	Jojoba acyl CoA reductase-related male sterility protein 	LOC_Os08g20200.1	"male sterility protein, putative, expressed"	AC235092_10.1	Male sterility protein AC235092.1 44793-34419 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.157986.1.A1_at	A	A1MS	POPTR_0002s22380	POPTR_0002s22380 (11)	scaffold_2:19087470-19087906(-) (11)	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158005.1.A1_at	A	A1TS	POPTR_0001s10270	POPTR_0001s10270 (11)	scaffold_1:7958423-7959113(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT3G61610.1	Galactose mutarotase-like superfamily protein 	LOC_Os05g49430.1	"aldose 1-epimerase, putative, expressed"	Medtr5g009770.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.158009.1.A1_a_at	A	A1TS	POPTR_0001s02880	POPTR_0001s02880 (11)	scaffold_1:2271788-2271848(-) (11)	NA	Q9FUR2	"Type I inositol-1,4,5-trisphosphate 5-phosphatase 2"	AT4G18010.2	myo-inositol polyphosphate 5-phosphatase 2 	LOC_Os01g51890.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr5g014290.1	Inositol polyphosphate related phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15802.1.S1_at	A	A1TS	POPTR_0007s13700	POPTR_0007s13700 (11)	scaffold_7:13729677-13730185(+) (11)	NA	Q9FH57	GATA transcription factor 5	AT5G66320.2	GATA transcription factor 5 	LOC_Os02g43150.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g021280.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.158028.1.A1_at	A	A1TS	POPTR_0006s17870	POPTR_0006s17870 (11)	scaffold_6:16087271-16087445(+) (11)	NA	Q9C5E7	"Pumilio homolog 6, chloroplastic"	AT4G25880.2	pumilio 6 	LOC_Os08g40830.3	"pumilio domain-containing protein PPD1, putative, expressed"	Medtr2g041730.1	Pumilio/Puf RNA-binding 	NA	GO:0003723|RNA binding	NA
PtpAffx.158034.1.A1_at	A	A1TS	POPTR_0004s10510	POPTR_0004s10510 (9)	scaffold_4:9057560-9057629(+) (9)	NA	NA	NA	AT5G15880.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os09g02130.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158042.2.A1_a_at	A	A2TS	POPTR_0012s02950	POPTR_0012s02950 (11)//POPTR_0015s00860 (11)	scaffold_12:2387968-2388008(-) (11)//scaffold_15:500525-500565(-) (11)	NA	NA	NA	AT5G53660.1	growth-regulating factor 7 	LOC_Os03g51970.1	"growth-regulating factor, putative, expressed"	Medtr3g123080.1	hypothetical protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.158043.1.A1_at	A	A1TS	POPTR_0008s10080	POPTR_0008s10080 (10)	scaffold_8:6312222-6312623(+) (10)	NA	P81391	Myb-related protein 305	AT3G06490.1	myb domain protein 108 	LOC_Os03g20090.1	"MYB family transcription factor, putative, expressed"	Medtr2g037450.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1581.1.A1_at	A	A1TS	POPTR_0004s05230	POPTR_0004s05230 (11)	scaffold_4:3980900-3981309(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT2G33990.1	IQ-domain 9 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15810.1.S1_at	A	A1TS	POPTR_0007s00900	POPTR_0007s00900 (10)	scaffold_7:467968-468346(-) (10)	NA	Q8S0F0	Formin-like protein 1	AT3G25500.1	formin homology 1 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr4g128070.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158107.1.S1_at	A	A1TS	POPTR_0001s36710	POPTR_0001s36710 (11)	scaffold_1:35424977-35425182(-) (11)	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.1	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.2	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr5g100690.1	"Dihydrolipoamide acetyltransferase, long form "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
PtpAffx.158110.1.A1_s_at	A	A1TS	POPTR_0012s10230	POPTR_0012s10230 (11)	scaffold_12:11052652-11053071(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158132.1.A1_at	A	A1TS	POPTR_0001s07880	POPTR_0001s07880 (11)	scaffold_1:5965443-5966108(-) (11)	NA	Q8H1H9	Primary amine oxidase	AT1G62810.1	Copper amine oxidase family protein 	LOC_Os04g20164.1	"amine oxidase precursor, putative, expressed"	Medtr3g109760.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.158190.1.A1_s_at	A	A1TS	POPTR_0014s02310	POPTR_0014s02310 (11)	scaffold_14:1963999-1964236(-) (11)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.158194.1.A1_at	A	A1TS	POPTR_0016s04690	POPTR_0016s04690 (11)	scaffold_16:2696751-2697153(-) (9)//scaffold_16:2792805-2793207(-) (11)	NA	Q7F8R0	Zinc finger CCCH domain-containing protein 14	AT3G12130.1	KH domain-containing protein / zinc finger (CCCH type) family protein 	LOC_Os02g10080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g111840.1	"Zinc finger, CCCH-type; KH, type 1 "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.158197.1.A1_a_at	A	A1TS	POPTR_0011s11150	POPTR_0011s11150 (10)	scaffold_11:13874018-13874336(+) (10)	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78860.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23720.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
PtpAffx.158198.1.A1_at	A	A1TS	POPTR_0013s10220	POPTR_0013s10220 (11)	scaffold_13:10228605-10228740(-) (11)	NA	Q8L5Z1	GDSL esterase/lipase At1g33811	AT1G33811.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g52770.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g013150.1	"GDSL-lipase 1, putative "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.158198.1.A1_s_at	A	A1TS	POPTR_0013s10220	POPTR_0013s10220 (11)	scaffold_13:10228748-10228876(-) (11)	NA	Q8L5Z1	GDSL esterase/lipase At1g33811	AT1G33811.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g52770.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g013150.1	"GDSL-lipase 1, putative "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.158215.1.A1_at	A	A1TS	POPTR_0018s01230	POPTR_0018s01230 (10)	scaffold_18:1201611-1202134(+) (10)	NA	Q9SLA1	Probable protein phosphatase 2C 22	AT2G25620.1	DNA-binding protein phosphatase 1 	LOC_Os06g39600.1	"protein phosphatase 2C, putative, expressed"	Medtr3g136310.2	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158231.1.A1_at	A	A2TS	POPTR_0002s23760	POPTR_0002s23760 (11)//POPTR_0002s23770 (11)	scaffold_2:21266273-21266741(+) (11)//scaffold_2:21272547-21273012(+) (11)	NA	Q9LR44	Indole-3-acetate beta-glucosyltransferase 1	AT4G15550.1	indole-3-acetate beta-D-glucosyltransferase 	LOC_Os01g08440.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr3g104600.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158250.1.S1_at	A	A1TS	POPTR_0005s19230	POPTR_0005s19230 (10)	scaffold_5:17946510-17946981(-) (10)	NA	Q498M4	WD repeat-containing protein 5	AT3G49660.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g51550.3	"WD repeat-containing protein 5, putative, expressed"	Medtr8g138930.1	"Protein will die slowly, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158256.1.A1_at	A	A1TS	POPTR_0001s05070	POPTR_0001s05070 (11)	scaffold_1:3898807-3899103(-) (11)	NA	Q7F8R0	Zinc finger CCCH domain-containing protein 14	AT3G12130.1	KH domain-containing protein / zinc finger (CCCH type) family protein 	LOC_Os02g10080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g111840.1	"Zinc finger, CCCH-type; KH, type 1 "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.158257.1.A1_s_at	A	A1TS	POPTR_0016s14340	POPTR_0016s14340 (10)	scaffold_16:13589081-13589562(+) (10)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT3G08760.1	Protein kinase superfamily protein 	LOC_Os01g60700.1	"serine/threonine-protein kinase NAK, putative, expressed"	Medtr7g080340.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158262.1.A1_at	A	A1TS	POPTR_0019s13410	POPTR_0019s13410 (9)	scaffold_19:14316374-14316925(-) (9)	NA	NA	NA	AT4G03420.1	Protein of unknown function (DUF789) 	LOC_Os10g35150.1	expressed protein	Medtr8g096450.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158267.1.A1_at	A	A1TS	POPTR_0010s00710	POPTR_0010s00710 (10)	scaffold_10:403503-403548(-) (10)	NA	Q0WW40	F-box/kelch-repeat protein At1g16250	AT1G16250.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os10g24900.1	"OsFBK22 - F-box domain and kelch repeat containing protein, expressed"	Medtr3g103600.1	"Cyclin-like F-box; Galactose oxidase, central; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15827.1.S1_at	A	A1TS	POPTR_0005s18470	POPTR_0005s18470 (11)	scaffold_5:16692390-16692813(-) (11)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G67200.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.158270.1.A1_at	A	A1TS	POPTR_0015s09920	POPTR_0015s09920 (11)	scaffold_15:10979296-10979815(-) (11)	NA	NA	NA	AT5G63160.1	BTB and TAZ domain protein 1 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr8g109870.1	"Zinc finger, TAZ-type; BTB/POZ; ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
PtpAffx.158281.1.A1_s_at	A	A1TS	POPTR_0007s05880	POPTR_0007s05880 (11)	scaffold_7:4015725-4018006(-) (11)	NA	Q9SIE1	Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase	AT2G22250.3	aspartate aminotransferase 	LOC_Os01g65090.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g140320.1	"Aminotransferase, class I and II; ; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.158291.1.A1_at	A	A1TS	POPTR_0004s00510	POPTR_0004s00510 (11)	scaffold_4:177480-177568(+) (11)	NA	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr2g025590.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158291.1.A1_s_at	A	A1TS	POPTR_0004s00510	POPTR_0004s00510 (11)	scaffold_4:177268-177494(+) (11)	NA	NA	NA	AT5G35810.1	Ankyrin repeat family protein 	LOC_Os11g14520.1	conserved hypothetical protein	Medtr2g025590.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158296.2.A1_a_at	A	A1TS	POPTR_0003s15390	POPTR_0003s15390 (11)	scaffold_3:15175430-15176426(-) (11)	NA	Q9XI84	"Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic"	AT4G20130.1	plastid transcriptionally active 14 	LOC_Os05g50980.1	"SET domain containing protein, expressed"	Medtr4g089950.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15830.1.S1_at	A	A1MS	POPTR_0006s09590	POPTR_0006s09590 (9)	scaffold_6:7047179-7047654(+) (9)	NA	NA	NA	AT3G09210.1	plastid transcriptionally active 13 	LOC_Os03g61030.1	"transcription termination factor nusG family protein, expressed"	Medtr4g015580.1	Bacterial transcription antitermination protein NusG 	GO:0034645|cellular macromolecule biosynthetic process||GO:0032968|positive regulation of RNA elongation from RNA polymerase II promoter	GO:0003711|transcription elongation regulator activity	NA
PtpAffx.158306.1.A1_at	A	A1TS	POPTR_0005s18330	POPTR_0005s18330 (11)	scaffold_5:16474742-16475595(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT5G67130.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os09g02729.1	"phospholipase C, putative, expressed"	Medtr5g016790.1	"Carbohydrate kinase, FGGY; Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158313.1.A1_at	A	A1TS	POPTR_0012s08250	POPTR_0012s08250 (11)	scaffold_12:9300977-9301284(-) (11)	NA	NA	NA	AT5G62520.1	similar to RCD one 5 	LOC_Os04g57640.2	"RCD1, putative, expressed"	Medtr3g113780.1	"PARP, catalytic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158349.1.S1_at	A	A1TS	POPTR_0009s10820	POPTR_0009s10820 (11)	scaffold_9:9182901-9184529(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT3G19130.1	RNA-binding protein 47B 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g129250.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.158349.2.S1_s_at	A	A2TS	POPTR_0009s10820	POPTR_0009s10820 (11)//POPTR_0004s15080 (10)	scaffold_4:15748671-15750031(+) (10)//scaffold_9:9183042-9184404(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT3G19130.1	RNA-binding protein 47B 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g129250.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.158358.1.S1_at	A	A1TS	POPTR_0004s21890	POPTR_0004s21890 (10)	scaffold_4:20864641-20865422(-) (11)	NA	Q9SZL7	Protein FAR1-RELATED SEQUENCE 9	AT4G38170.1	FAR1-related sequence 9 	LOC_Os03g45300.1	"transposon protein, putative, unclassified, expressed"	Medtr5g106890.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.158360.1.S1_s_at	A	A1TS	POPTR_0009s03990	POPTR_0009s03990 (11)	scaffold_9:4565047-4565362(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT3G46640.2	Homeodomain-like superfamily protein 	LOC_Os01g74020.1	"MYB family transcription factor, putative, expressed"	Medtr4g084700.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158361.1.S1_at	A	A1TS	POPTR_0018s07790	POPTR_0018s07790 (10)	scaffold_18:8592440-8592907(-) (10)	NA	Q96MB7	Putative nuclease HARBI1	AT4G29780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519; Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	LOC_Os01g40070.1	expressed protein	Medtr1g019300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158373.1.S1_at	A	A1TS	POPTR_0014s15800	POPTR_0014s15800 (10)	scaffold_14:11866064-11866660(+) (10)	POPTR_0014s15810 (7)	Q67ZU1	Triacylglycerol lipase 2	AT5G14180.1	Myzus persicae-induced lipase 1 	LOC_Os04g21160.1	"triacylglycerol lipase 1 precursor, putative"	Medtr5g092310.1	Alpha/beta hydrolase fold; AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.158377.1.S1_at	A	A1TS	POPTR_0017s13610	POPTR_0017s13610 (11)	scaffold_17:13724267-13726363(+) (11)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os08g38210.4	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.15840.1.S1_at	A	A1TS	POPTR_0004s10880	POPTR_0004s10880 (10)	scaffold_4:9433849-9433882(-) (10)//scaffold_4:9446114-9446147(-) (10)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.15840.1.S1_s_at	A	A3TS	POPTR_0004s10880	POPTR_0004s10880 (11)//POPTR_0017s14470 (11)//POPTR_0004s10870 (10)	scaffold_17:14505027-14505268(-) (11)//scaffold_4:9432874-9434263(-) (10)//scaffold_4:9446366-9446607(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
PtpAffx.158408.1.S1_s_at	A	A1TS	POPTR_0003s19770	POPTR_0003s19770 (11)	scaffold_3:18417183-18417545(+) (11)	NA	Q9FLE8	Uncharacterized protein At5g39865	AT5G13810.1	Glutaredoxin family protein 	LOC_Os03g24030.1	"glutaredoxin, putative, expressed"	Medtr8g039690.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
PtpAffx.158411.1.S1_s_at	A	A1TS	POPTR_0008s20730	POPTR_0008s20730 (11)	scaffold_8:14712434-14712951(+) (11)	NA	P13917	Basic 7S globulin	AT1G03220.1	Eukaryotic aspartyl protease family protein 	LOC_Os05g33400.1	"basic 7S globulin precursor, putative, expressed"	Medtr1g086550.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158416.1.S1_at	A	A1TS	POPTR_0019s00830	POPTR_0019s00830 (11)	scaffold_19:556446-558157(+) (11)	POPTR_0004s14590 (6)	P25406	Alcohol dehydrogenase 1B	AT5G63620.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os08g01760.1	"dehydrogenase, putative, expressed"	Medtr4g144410.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.158423.1.S1_at	A	A1TS	POPTR_0010s23630	POPTR_0010s23630 (10)	scaffold_10:20167351-20167856(+) (10)	NA	Q84K00	NAC domain-containing protein 78	AT3G10480.1	NAC domain containing protein 50 	LOC_Os08g44820.1	"no apical meristem protein, putative, expressed"	Medtr8g073410.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.158426.1.S1_at	A	A1TS	POPTR_0002s03890	POPTR_0002s03890 (11)	scaffold_2:2441715-2443761(-) (11)	NA	Q8L4E7	SAP-like protein BP-73	AT1G06190.1	Rho termination factor 	LOC_Os03g08480.2	"rho termination factor, N-terminal domain containing protein, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006353|transcription termination	GO:0003715|transcription termination factor activity	NA
PtpAffx.158437.1.S1_at	A	A1TS	POPTR_0004s07810	POPTR_0004s07810 (11)	scaffold_4:6408015-6408463(+) (11)	NA	Q20EV4	Putative septum site-determining protein minD	AT5G24020.1	septum site-determining protein (MIND) 	LOC_Os06g01690.1	"septum site-determining protein minD, putative, expressed"	Medtr4g092230.1	"Septum site-determining protein minD, putative "	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
PtpAffx.158442.1.S1_at	A	A1TS	POPTR_0014s08290	POPTR_0014s08290 (11)	scaffold_14:6162018-6163322(-) (11)	NA	Q8LE94	E3 ubiquitin-protein ligase At3g02290	AT4G00335.2	RING-H2 finger B1A 	LOC_Os11g18947.2	"zinc finger, C3HC4 type domain containing protein, expressed"	AC235567_12.1	"Zinc finger, RING-type AC235567.1 46372-52293 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158448.1.S1_at	A	A1TS	POPTR_0011s07480	POPTR_0011s07480 (10)	scaffold_11:8325582-8326048(+) (10)	NA	P04256	Heterogeneous nuclear ribonucleoprotein A1	AT3G15010.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os01g42820.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g127970.1	"RNA-binding region RNP-1 (RNA recognition motif); Aminoacyl-tRNA synthetase, class I "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.158450.1.S1_at	A	A1TS	POPTR_0006s22700	POPTR_0006s22700 (11)	scaffold_6:21633201-21634404(+) (11)	NA	NA	NA	AT5G06130.2	chaperone protein dnaJ-related 	LOC_Os02g33149.1	"OR, putative, expressed"	Medtr4g041160.1	"OR, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158453.1.S1_at	A	A1TS	POPTR_0009s13790	POPTR_0009s13790 (11)	scaffold_9:10928186-10930462(-) (11)	NA	NA	NA	AT2G16800.1	high-affinity nickel-transport family protein 	LOC_Os06g02580.1	"high-affinity nickel-transport family protein, putative, expressed"	Medtr4g098410.1	High-affinity nickel-transporter 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	GO:0016021|integral to membrane
PtpAffx.158454.1.S1_s_at	A	A1TS	POPTR_0012s01690	POPTR_0012s01690 (11)	scaffold_12:1287602-1287941(+) (11)	NA	O65717	Cyclic nucleotide-gated ion channel 1	AT5G53130.1	cyclic nucleotide gated channel 1 	LOC_Os06g33570.1	"cyclic nucleotide-gated ion channel 1, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.158454.2.S1_at	A	A1TS	POPTR_0015s02090	POPTR_0015s02090 (11)	scaffold_15:1425812-1426187(-) (11)	NA	O65717	Cyclic nucleotide-gated ion channel 1	AT5G53130.1	cyclic nucleotide gated channel 1 	LOC_Os06g33570.1	"cyclic nucleotide-gated ion channel 1, putative, expressed"	Medtr8g145290.1	IQ calmodulin-binding region; Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
PtpAffx.158462.1.S1_at	A	A1TS	POPTR_0001s14120	POPTR_0001s14120 (9)	scaffold_1:11080790-11081741(-) (9)	NA	Q9T0H9	"UPF0016 protein 2, chloroplastic"	AT4G13590.1	Uncharacterized protein family (UPF0016) 	LOC_Os11g34180.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr5g009920.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
PtpAffx.158470.1.S1_s_at	A	A1TS	POPTR_0006s14950	POPTR_0006s14950 (11)	scaffold_6:12425073-12425828(-) (11)	NA	Q9LTR9	Glycylpeptide N-tetradecanoyltransferase 1	AT5G57020.1	myristoyl-CoA:protein N-myristoyltransferase 	LOC_Os01g51170.1	"glycylpeptide N-tetradecanoyltransferase 1, putative, expressed"	Medtr2g046620.1	Myristoyl-CoA:protein N-myristoyltransferase 	GO:0006499|N-terminal protein myristoylation	GO:0004379|glycylpeptide N-tetradecanoyltransferase activity	NA
PtpAffx.158485.1.S1_at	A	A1TS	POPTR_0001s38310	POPTR_0001s38310 (10)	scaffold_1:37396628-37397811(+) (10)	NA	Q9ZRA2	"Homogentisate 1,2-dioxygenase"	AT5G54080.2	"homogentisate 1,2-dioxygenase "	LOC_Os06g01360.1	"homogentisate 1,2-dioxygenase, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006570|tyrosine metabolic process||GO:0006559|L-phenylalanine catabolic process	"GO:0004411|""homogentisate 1,2-dioxygenase activity"""	NA
PtpAffx.158487.1.S1_s_at	A	A1TS	POPTR_0001s33670	POPTR_0001s33670 (11)	scaffold_1:31876351-31876547(+) (11)	NA	NA	NA	AT3G01930.2	Major facilitator superfamily protein 	LOC_Os08g42010.1	"nodulin, putative, expressed"	Medtr3g150630.1	Nodulin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158491.2.S1_s_at	A	A2TS	POPTR_0014s00670	POPTR_0014s00670 (11)//POPTR_0014s01090 (11)	scaffold_14:621633-622828(+) (11)//scaffold_14:1014473-1015670(-) (11)	NA	Q9LHE5	Mitochondrial import receptor subunit TOM40 homolog 1	AT3G20000.1	translocase of the outer mitochondrial membrane 40 	LOC_Os03g20750.1	"outer mitochondrial membrane porin, putative, expressed"	Medtr4g156410.1	"Porin, eukaryotic type "	GO:0006820|anion transport	GO:0008308|voltage-gated anion channel activity	GO:0005741|mitochondrial outer membrane
PtpAffx.158492.1.S1_at	A	A1TS	POPTR_0009s07710	POPTR_0009s07710 (11)	scaffold_9:7137553-7138786(-) (11)	NA	P49078	Asparagine synthetase [glutamine-hydrolyzing]	AT3G47340.1	glutamine-dependent asparagine synthase 1 	LOC_Os06g15420.1	"asparagine synthetase, putative, expressed"	Medtr5g079660.1	Asparagine synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006529|asparagine biosynthetic process	GO:0004066|asparagine synthase (glutamine-hydrolyzing) activity	NA
PtpAffx.158517.1.S1_at	A	A1TS	POPTR_0005s00670	POPTR_0005s00670 (11)	scaffold_5:287699-289115(-) (11)	NA	P16638	ATP-citrate synthase	AT1G09430.1	ATP-citrate lyase A-3 	LOC_Os11g47330.1	"ATP-grasp domain containing protein, expressed"	Medtr5g035230.1	"ATP-grasp fold, succinyl-CoA synthetase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158518.1.S1_a_at	A	A1TS	POPTR_0016s12290	POPTR_0016s12290 (11)	scaffold_16:11638603-11638770(-) (11)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.158518.1.S1_at	A	A1MS	POPTR_0016s12290	POPTR_0016s12290 (9)	scaffold_16:11638281-11638568(-) (9)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.158518.2.S1_at	A	A1TS	POPTR_0016s12290	POPTR_0016s12290 (10)	scaffold_16:11636994-11638112(-) (10)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.158518.3.S1_a_at	A	A2TS	POPTR_0006s10080	POPTR_0016s12290 (11)//POPTR_0006s10080 (11)	scaffold_16:11637053-11637088(-) (11)//scaffold_6:7490163-7490198(-) (11)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.158518.3.S1_at	A	A1TS	POPTR_0006s10080	POPTR_0006s10080 (11)	scaffold_6:7490256-7492180(-) (11)	NA	Q93Z81	Vacuolar cation/proton exchanger 3	AT3G51860.1	cation exchanger 3 	LOC_Os01g37690.1	"sodium/calcium exchanger protein, putative, expressed"	Medtr3g166520.1	"Bacterial extracellular solute-binding protein, family 3; Calcium/proton exchanger superfamily "	NA	NA	GO:0016021|integral to membrane
PtpAffx.158523.1.S1_s_at	A	A1TS	POPTR_0007s12270	POPTR_0007s12270 (11)	scaffold_7:12589911-12590237(-) (11)	NA	Q9S7G2	Probable galacturonosyltransferase-like 2	AT3G50760.1	galacturonosyltransferase-like 2 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
PtpAffx.158527.1.S1_at	A	A1TS	POPTR_0002s22090	POPTR_0002s22090 (11)	scaffold_2:18793175-18793535(-) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr2g030170.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158529.1.S1_at	A	A1MS	POPTR_0010s10130	POPTR_0010s10130 (11)	scaffold_10:10707176-10707320(+) (11)	NA	Q4WVW4	Vacuolar protein 8	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.158529.1.S1_s_at	A	A2TS	POPTR_0010s10130	POPTR_0010s10130 (11)//POPTR_0008s14950 (9)	scaffold_10:10706236-10707171(+) (11)//scaffold_8:9958617-9959443(-) (9)	NA	Q4WVW4	Vacuolar protein 8	AT5G19330.1	ARM repeat protein interacting with  ABF2 	LOC_Os05g33050.1	"ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed"	Medtr1g132830.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.15853.1.S1_at	A	A1TS	POPTR_0019s07540	POPTR_0019s07540 (10)	scaffold_19:8585040-8585466(-) (10)	NA	Q42967	"Uroporphyrinogen decarboxylase, chloroplastic"	AT2G40490.1	Uroporphyrinogen decarboxylase 	LOC_Os03g21900.1	"uroporphyrinogen decarboxylase, putative, expressed"	Medtr3g097390.1	Uroporphyrinogen decarboxylase (URO-D) 	GO:0006779|porphyrin biosynthetic process	GO:0004853|uroporphyrinogen decarboxylase activity	NA
PtpAffx.15855.1.A1_at	A	A1TS	POPTR_0011s03550	POPTR_0011s03550 (10)	scaffold_11:3610470-3610953(-) (10)	NA	Q38732	"DAG protein, chloroplastic"	AT1G11430.1	"plastid developmental protein DAG, putative "	LOC_Os08g04450.3	"DAG protein, chloroplast precursor, putative, expressed"	Medtr2g011060.1	"DAG protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15855.2.A1_a_at	A	A1TS	POPTR_0006s03030	POPTR_0006s03030 (11)	scaffold_6:1911080-1911311(-) (11)	NA	NA	NA	AT3G56590.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g71220.1	"zinc finger protein, putative, expressed"	Medtr7g105620.1	"Putative RING zinc finger protein-, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158552.1.S1_s_at	A	A1TS	POPTR_0004s23530	POPTR_0004s23530 (11)	scaffold_4:22223138-22223584(+) (11)	NA	Q8BMJ2	"Leucyl-tRNA synthetase, cytoplasmic"	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os09g32650.1	"leucyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr7g006010.1	"Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.158559.1.S1_at	A	A1TS	POPTR_0009s15200	POPTR_0009s15200 (11)	scaffold_9:11810257-11810776(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT1G08230.2	Transmembrane amino acid transporter family protein 	LOC_Os01g63854.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158559.2.S1_a_at	A	A1TS	POPTR_0009s15200	POPTR_0009s15200 (11)	scaffold_9:11807895-11808032(+) (11)	NA	Q9FKS8	Lysine histidine transporter 1	AT1G08230.2	Transmembrane amino acid transporter family protein 	LOC_Os01g63854.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr4g073560.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158567.1.S1_s_at	A	A1TS	POPTR_0010s15920	POPTR_0010s15920 (11)	scaffold_10:14986452-14987012(-) (11)	NA	Q9LSM9	Serine carboxypeptidase-like 33	AT3G17180.1	serine carboxypeptidase-like 33 	LOC_Os05g06660.1	"OsSCP26 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g014510.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.158569.1.S1_s_at	A	A1TS	POPTR_0005s18490	POPTR_0005s18490 (11)	scaffold_5:16730172-16730667(-) (11)	NA	Q9STX0	Probable WRKY transcription factor 7	AT4G24240.1	WRKY DNA-binding protein 7 	LOC_Os04g21950.1	"OsWRKY51 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr5g016540.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.158573.1.S1_at	A	A1TS	POPTR_0013s06350	POPTR_0013s06350 (11)	scaffold_13:4896927-4897350(+) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT5G17790.1	zinc finger (Ran-binding) family protein 	LOC_Os01g59980.1	"zinc finger family protein, putative, expressed"	Medtr7g103850.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.158580.1.S1_at	A	A1TS	POPTR_0014s14010	POPTR_0014s14010 (9)	scaffold_14:10252911-10253602(-) (9)	NA	P46643	"Aspartate aminotransferase, mitochondrial"	AT2G30970.2	aspartate aminotransferase 1 	LOC_Os06g35540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.158593.1.S1_at	A	A1TS	POPTR_0015s00420	POPTR_0015s00420 (11)	scaffold_15:234264-234765(-) (11)	NA	Q9ZR09	Putative F-box/FBD/LRR-repeat protein At4g03220	AT4G03220.1	Protein with RNI-like/FBD-like domains 	LOC_Os10g03780.1	"OsFBX351 - F-box domain containing protein, expressed"	Medtr8g018890.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158597.1.S1_at	A	A1TS	POPTR_0016s10930	POPTR_0016s10930 (10)	scaffold_16:9324782-9324981(+) (10)	NA	Q3EBL9	Vacuolar protein-sorting-associated protein 37 homolog 2	AT2G36680.1	Modifier of rudimentary (Mod(r)) protein 	LOC_Os03g08770.1	"modifier of rudimentary protein, expressed"	Medtr7g124470.1	"Modifier of rudimentary, Modr "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158598.1.S1_s_at	A	A2TS	POPTR_0012s05060	POPTR_0012s05060 (11)//POPTR_0015s03900 (11)	scaffold_12:4559120-4559871(-) (11)//scaffold_15:3827282-3828058(+) (11)	NA	Q54NP8	Kinesin-related protein 4	AT1G18370.1	ATP binding microtubule motor family protein 	LOC_Os01g33040.1	"kinesin motor domain containing protein, expressed"	Medtr8g133190.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.1586.1.S1_at	A	A1TS	POPTR_0018s05800	POPTR_0018s05800 (11)	scaffold_18:5437977-5439254(-) (11)	NA	Q6S004	Kinesin-related protein 6	AT3G16060.1	ATP binding microtubule motor family protein 	LOC_Os01g43580.1	"kinesin motor domain containing protein, putative, expressed"	Medtr2g123010.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.158644.1.S1_at	A	A1TS	POPTR_0012s08630	POPTR_0012s08630 (10)	scaffold_12:9731269-9732021(-) (10)	NA	Q07123	Copper methylamine oxidase	AT2G42490.1	Copper amine oxidase family protein 	LOC_Os04g40040.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr3g114690.1	Copper amine oxidase; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
PtpAffx.158656.1.A1_a_at	A	A2TS	POPTR_0006s04890	POPTR_0016s05640 (11)//POPTR_0006s04890 (11)	scaffold_16:3550953-3551089(+) (11)//scaffold_6:3422466-3422602(-) (11)	POPTR_0006s04880 (7)	NA	NA	AT2G41810.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158656.1.A1_at	A	A1TS	POPTR_0016s05640	POPTR_0016s05640 (11)	scaffold_16:3550979-3551441(+) (11)	NA	NA	NA	AT2G41810.1	"Protein of unknown function, DUF642 "	LOC_Os03g59300.1	expressed protein	Medtr4g049740.1	Protein of unknown function DUF642 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158679.1.S1_at	A	A1TS	POPTR_0002s00350	POPTR_0002s00350 (10)	scaffold_2:93541-94050(+) (10)	NA	Q9FIH9	Calcium-binding protein CML37	AT5G42380.1	calmodulin like 37 	LOC_Os01g72530.1	"OsCML31 - Calmodulin-related calcium sensor protein, expressed"	Medtr6g025320.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158704.1.S1_at	A	A1TS	POPTR_0002s01310	POPTR_0002s01310 (11)	scaffold_2:694497-695724(+) (11)	NA	Q944A7	Probable serine/threonine-protein kinase At4g35230	AT4G35230.1	BR-signaling kinase 1 	LOC_Os03g04050.1	"protein kinase family protein, putative, expressed"	Medtr5g106610.1	Protein kinase; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158710.1.S1_s_at	A	A1TS	POPTR_0014s09180	POPTR_0014s09180 (10)	scaffold_14:6807970-6808396(+) (10)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008800.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15872.1.A1_at	A	A1TS	POPTR_0017s05620	POPTR_0017s05620 (11)	scaffold_17:4405565-4406429(-) (11)	NA	Q6UPE1	"Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial"	AT2G43400.1	electron-transfer flavoprotein:ubiquinone oxidoreductase 	LOC_Os10g37210.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr2g118420.1	Electron transfer flavoprotein-ubiquinone oxidoreductase 	GO:0055114|oxidation reduction	GO:0004174|electron-transferring-flavoprotein dehydrogenase activity	NA
PtpAffx.158724.1.S1_at	A	A1TS	POPTR_0014s12360	POPTR_0014s12360 (9)	scaffold_14:9124081-9127112(+) (11)	NA	Q99685	Monoglyceride lipase	AT3G62860.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g29974.1	"lipase, putative, expressed"	Medtr8g068300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158726.1.S1_at	A	A1TS	POPTR_0001s13790	POPTR_0001s13790 (11)	scaffold_1:10860889-10861635(-) (11)	NA	Q9FYF9	F-box protein At1g67340	AT1G67340.1	HCP-like superfamily protein with MYND-type zinc finger 	LOC_Os01g69270.1	"OsFBO2 - F-box and other domain containing protein, expressed"	Medtr3g103820.1	"Zinc finger, MYND-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.158732.1.S1_at	A	A1TS	POPTR_0012s01140	POPTR_0012s01140 (11)	scaffold_12:793429-794827(+) (11)	NA	Q40546	"Pyruvate kinase isozyme G, chloroplastic"	AT5G52920.1	plastidic pyruvate kinase beta subunit 1 	LOC_Os01g47080.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
PtpAffx.158738.1.S1_at	A	A1TS	POPTR_0005s22370	POPTR_0005s22370 (11)	scaffold_5:21328990-21329327(+) (11)	NA	P08965	Meiosis protein mei2	AT1G29400.2	MEI2-like protein 5 	LOC_Os02g48790.4	"AML1, putative, expressed"	Medtr2g056620.1	"RNA recognition motif 2; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.158743.1.S1_s_at	A	A1TS	POPTR_0002s25830	POPTR_0002s25830 (11)	scaffold_2:22873265-22876071(-) (11)	NA	Q38829	Auxin-responsive protein IAA11	AT4G28640.3	indole-3-acetic acid inducible 11 	LOC_Os02g57250.1	"OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr5g032240.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
PtpAffx.15875.1.A1_at	A	A1TS	POPTR_0015s09560	POPTR_0015s09560 (11)	scaffold_15:10751417-10751933(+) (11)	NA	Q5RC94	Next to BRCA1 gene 1 protein	AT4G24690.1	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein 	LOC_Os02g38050.3	"joka2, putative, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	NA
PtpAffx.158765.1.S1_a_at	A	A2TS	POPTR_0005s07150	POPTR_0005s07150 (11)//POPTR_0007s04880 (11)	scaffold_5:4804940-4805978(+) (11)//scaffold_7:3067950-3069006(+) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158765.1.S1_at	A	A1TS	POPTR_0005s07150	POPTR_0005s07150 (11)	scaffold_5:4804507-4805187(+) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158765.2.S1_s_at	A	A1TS	POPTR_0005s07150	POPTR_0005s07150 (11)	scaffold_5:4809906-4810156(+) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158768.1.S1_at	A	A1TS	POPTR_0001s33790	POPTR_0001s33790 (11)	scaffold_1:31955104-31955508(+) (11)	NA	P37707	B2 protein	AT3G27090.1	DCD (Development and Cell Death) domain protein 	LOC_Os05g41930.3	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158769.1.S1_s_at	A	A1TS	POPTR_0010s23960	POPTR_0010s23960 (11)	scaffold_10:20383247-20385209(+) (11)	NA	NA	NA	AT3G52230.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158772.1.S1_s_at	A	A1TS	POPTR_0018s02840	POPTR_0018s02840 (11)	scaffold_18:2500604-2502937(+) (11)	NA	Q6K687	Zinc finger CCCH domain-containing protein 18	AT2G24830.1	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein 	LOC_Os02g55000.1	"zinc finger CCCH-type with G patch domain-containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.158774.2.S1_at	A	A1TS	POPTR_0016s08470	POPTR_0016s08470 (11)	scaffold_16:6274262-6274316(-) (11)	NA	Q54IF9	Myb-like protein G	AT3G09600.1	Homeodomain-like superfamily protein 	LOC_Os02g45670.1	"myb-like DNA-binding domain containing protein, expressed"	AC235567_21.1	Homeodomain-related AC235567.1 79376-72886 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158774.2.S1_s_at	A	A1TS	POPTR_0016s08470	POPTR_0016s08470 (11)	scaffold_16:6273293-6273573(-) (11)	NA	Q54IF9	Myb-like protein G	AT3G09600.1	Homeodomain-like superfamily protein 	LOC_Os02g45670.1	"myb-like DNA-binding domain containing protein, expressed"	AC235567_21.1	Homeodomain-related AC235567.1 79376-72886 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158776.1.S1_s_at	A	A1TS	POPTR_0012s10230	POPTR_0012s10230 (11)	scaffold_12:11056458-11057606(-) (11)	NA	Q9FMV0	F-box/LRR-repeat protein At5g63520	AT5G63520.1	"CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). "	NA	NA	Medtr3g150750.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158779.1.S1_at	A	A1TS	POPTR_0010s21010	POPTR_0010s21010 (11)	scaffold_10:18444015-18444320(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158783.1.S1_at	A	A1TS	POPTR_0006s23110	POPTR_0006s23110 (11)	scaffold_6:21961265-21961773(+) (11)	NA	Q6AWW5	Ankyrin repeat-containing protein At5g02620	AT1G07710.1	Ankyrin repeat family protein 	LOC_Os03g17250.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr2g114160.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158799.1.S1_s_at	A	A1TS	POPTR_0007s12540	POPTR_0007s12540 (11)	scaffold_7:12826218-12828228(+) (11)	NA	Q9NVU0	DNA-directed RNA polymerase III subunit RPC5	AT5G49530.1	SIN-like family protein 	LOC_Os08g16780.1	"sin-like protein conserved region containing protein, expressed"	Medtr5g026170.1	Sin-like protein conserved region 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.158803.1.S1_at	A	A1TS	POPTR_0008s12090	POPTR_0008s12090 (11)	scaffold_8:7803302-7803469(-) (11)	NA	NA	NA	AT1G68440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr5g067220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158803.1.S1_s_at	A	A1TS	POPTR_0008s12090	POPTR_0008s12090 (9)	scaffold_8:7803019-7803253(-) (9)	NA	NA	NA	AT1G68440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr5g067220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158812.1.S1_s_at	A	A1TS	POPTR_0002s07740	POPTR_0002s07740 (11)	scaffold_2:5302922-5303696(-) (11)	NA	Q6PDK2	Histone-lysine N-methyltransferase MLL2	AT1G77250.1	RING/FYVE/PHD-type zinc finger family protein 	LOC_Os08g01420.1	"PHD-finger domain containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158814.1.S1_at	A	A1TS	POPTR_0014s03530	POPTR_0014s03530 (11)	scaffold_14:2828086-2828889(-) (11)	NA	Q9S7T8	Serpin-ZX	AT1G47710.1	Serine protease inhibitor (SERPIN) family protein 	LOC_Os03g41438.1	"serpin domain containing protein, putative, expressed"	Medtr3g148650.1	"Proteinase inhibitor I4, serpin "	NA	GO:0004867|serine-type endopeptidase inhibitor activity	NA
PtpAffx.158815.1.S1_at	A	A1TS	POPTR_0014s00330	POPTR_0014s00330 (11)	scaffold_14:136683-137606(+) (11)	NA	NA	NA	AT3G13062.2	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os02g26860.1	"START domain containing protein, putative, expressed"	Medtr4g163310.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158820.1.S1_s_at	A	A1TS	POPTR_0004s17020	POPTR_0004s17020 (11)	scaffold_4:17372695-17373210(-) (11)	NA	Q43075	Arginine decarboxylase	AT4G34710.2	arginine decarboxylase 2 	LOC_Os06g04070.1	"pyridoxal-dependent decarboxylase protein, putative, expressed"	Medtr4g097390.1	Arginine decarboxylase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.158827.2.S1_a_at	A	A1TS	POPTR_0011s07420	POPTR_0011s07420 (11)	scaffold_11:8280001-8281486(-) (11)	NA	Q08448	Putative lipase YOR059C	AT1G29120.2	Hydrolase-like protein family 	LOC_Os06g06080.1	"serine esterase family protein, putative, expressed"	Medtr4g134610.1	"Protein of unknown function DUF676, hydrolase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15883.1.S1_at	A	A1TS	POPTR_0012s13330	POPTR_0012s13330 (11)	scaffold_12:13530671-13531911(+) (11)	NA	Q55AD9	ADP-ribosylation factor-like protein 5	AT3G22950.2	ADP-ribosylation factor C1 	LOC_Os11g37640.1	"ADP-ribosylation factor, putative, expressed"	Medtr1g106180.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.158831.1.S1_at	A	A1TS	POPTR_0001s41900	POPTR_0001s41900 (11)	scaffold_1:41611543-41612156(-) (11)	NA	Q13574	Diacylglycerol kinase zeta	AT2G20900.2	diacylglycerol kinase 5 	LOC_Os04g54200.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
PtpAffx.158844.1.S1_at	A	A1TS	POPTR_0016s09070	POPTR_0016s09070 (11)	scaffold_16:6965008-6967991(+) (11)	NA	P49299	"Citrate synthase, glyoxysomal"	AT3G58750.1	citrate synthase 2 	LOC_Os02g13840.1	"citrate synthase, putative, expressed"	Medtr5g099240.1	Citrate synthase 	GO:0044262|cellular carbohydrate metabolic process	"GO:0046912|""transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer"""	NA
PtpAffx.158876.1.S1_at	A	A1TS	POPTR_0006s07450	POPTR_0006s07450 (10)	scaffold_6:5403343-5406473(+) (10)	NA	NA	NA	AT2G19270.1	"CONTAINS InterPro DOMAIN/s: Mitotic checkpoint protein PRCC, C-terminal (InterPro:IPR018800); Has 930 Blast hits to 533 proteins in 146 species: Archae - 0; Bacteria - 18; Metazoa - 327; Fungi - 143; Plants - 61; Viruses - 0; Other Eukaryotes - 381 (source: NCBI BLink). "	LOC_Os02g07920.1	expressed protein	Medtr8g129770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158884.1.S1_at	A	A1MS	POPTR_0006s19660	POPTR_0006s19660 (10)	scaffold_6:18691386-18691687(+) (10)	NA	NA	NA	NA	NA	LOC_Os06g44200.3	"ZOS6-06 - C2H2 zinc finger protein, expressed"	Medtr8g145170.1	"Zinc finger, U1-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158888.1.S1_at	A	A1TS	POPTR_0017s11420	POPTR_0017s11420 (11)	scaffold_17:11183557-11184407(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os05g51420.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g113260.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158888.1.S1_s_at	A	A1TS	POPTR_0017s11420	POPTR_0017s11420 (11)	scaffold_17:11183575-11184611(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os05g51420.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g113260.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1589.1.S1_a_at	A	A1TS	POPTR_0016s12210	POPTR_0016s12210 (11)	scaffold_16:11550140-11550401(+) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1589.1.S1_at	A	A1TS	POPTR_0016s12210	POPTR_0016s12210 (11)	scaffold_16:11550358-11550525(+) (11)	NA	NA	NA	AT2G40060.1	Clathrin light chain protein 	LOC_Os04g58240.1	expressed protein	Medtr2g014910.1	Clathrin light chain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15891.1.A1_at	A	A1TS	POPTR_0019s04140	POPTR_0019s04140 (10)	scaffold_19:4243828-4244124(+) (10)	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g022900.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.158913.1.S1_s_at	A	A1TS	POPTR_0014s12860	POPTR_0014s12860 (11)	scaffold_14:9476740-9477498(-) (11)	NA	Q7ZV00	OTU domain-containing protein 6B	AT3G62940.3	Cysteine proteinases superfamily protein 	LOC_Os04g52850.1	"OTU-like cysteine protease family protein, putative, expressed"	Medtr7g129940.1	"Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158921.1.S1_at	A	A1TS	POPTR_0004s21830	POPTR_0004s21830 (11)	scaffold_4:20825278-20825402(+) (11)	NA	O64966	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g024810.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
PtpAffx.158921.1.S1_s_at	A	A2TS	POPTR_0004s21830	POPTR_0004s21830 (11)//POPTR_0009s17090 (11)	scaffold_4:20824949-20825425(+) (11)//scaffold_9:12867725-12868197(+) (11)	NA	O64966	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1 	LOC_Os08g40180.1	"3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed"	Medtr5g024810.1	Hydroxymethylglutaryl-coenzyme A reductase 	GO:0015936|coenzyme A metabolic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0004420|hydroxymethylglutaryl-CoA reductase (NADPH) activity||GO:0050662|coenzyme binding	NA
PtpAffx.158934.1.S1_s_at	A	A1TS	POPTR_0016s12570	POPTR_0016s12570 (11)	scaffold_16:11989204-11990977(-) (11)	NA	Q6GM29	Phosphatidylinositide phosphatase SAC1	AT3G51830.1	SAC domain-containing protein 8 	LOC_Os03g18080.2	"SacI homology domain containing protein, expressed"	Medtr5g023860.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158940.1.S1_at	A	A1TS	POPTR_0015s11640	POPTR_0015s11640 (11)	scaffold_15:12193159-12193578(-) (11)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
PtpAffx.158940.1.S1_s_at	A	A2TS	POPTR_0012s10770	POPTR_0015s11640 (11)//POPTR_0012s10770 (11)	scaffold_12:11459351-11460326(-) (11)//scaffold_15:12192449-12193639(-) (11)	NA	P35100	"ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic"	AT5G50920.1	CLPC homologue 1 	LOC_Os04g32560.2	"ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed"	Medtr4g152180.1	"UvrB/UvrC protein; AAA ATPase, central region "	GO:0044260|cellular macromolecule metabolic process||GO:0033554|cellular response to stress||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0019538|protein metabolic process	GO:0016887|ATPase activity||GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004518|nuclease activity||GO:0005515|protein binding	NA
PtpAffx.158944.1.S1_s_at	A	A1TS	POPTR_0030s00300	POPTR_0030s00300 (11)	scaffold_30:88230-88541(-) (11)	POPTR_0005s04910 (6)	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.158977.1.S1_at	A	A1TS	POPTR_0001s25100	POPTR_0001s25100 (11)	scaffold_1:24330561-24331757(-) (11)	NA	Q0WWW9	"D-xylose-proton symporter-like 3, chloroplastic"	AT5G59250.1	Major facilitator superfamily protein 	LOC_Os10g42830.1	"transporter family protein, putative, expressed"	Medtr4g107040.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
PtpAffx.158987.1.A1_at	A	A1TS	POPTR_0013s01290	POPTR_0013s01290 (11)	scaffold_13:722418-722740(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158988.1.S1_at	A	A1TS	POPTR_0002s00200	POPTR_0002s00200 (10)	scaffold_2:7132-7889(-) (10)	NA	Q9MA15	"Uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic"	AT1G79600.1	Protein kinase superfamily protein 	LOC_Os05g25840.3	"ELMO/CED-12 family protein, putative, expressed"	Medtr4g029450.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.158993.1.S1_at	A	A1TS	POPTR_0010s25010	POPTR_0010s25010 (10)	scaffold_10:20901595-20902674(+) (10)	NA	Q7SYN4	Cytosolic 5'-nucleotidase 3	AT2G38680.1	5'-nucleotidases;magnesium ion binding 	LOC_Os03g44660.1	"cytosolic 5-nucleotidase III, putative, expressed"	Medtr1g112120.1	HAD-superfamily subfamily IE hydrolase 	NA	GO:0008253|5'-nucleotidase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
PtpAffx.15900.1.S1_s_at	A	A1TS	POPTR_0006s05500	POPTR_0006s05500 (11)	scaffold_6:3880608-3881082(-) (11)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os02g37830.1	"protein kinase domain containing protein, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15900.2.S1_at	A	A1TS	POPTR_0016s05240	POPTR_0016s05240 (10)	scaffold_16:3194145-3194693(+) (10)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os12g41180.1	"LSTK-1-like kinase, putative, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159018.1.S1_at	A	A1TS	POPTR_0006s09670	POPTR_0006s09670 (11)	scaffold_6:7105092-7107298(+) (11)	NA	Q5ZHZ4	E3 ubiquitin-protein ligase Hakai	AT5G01160.1	RING/U-box superfamily protein 	LOC_Os10g35190.1	"ZOS10-06 - C2H2 zinc finger protein, expressed"	NA	NA	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.159020.1.S1_s_at	A	A1TS	POPTR_0019s07270	POPTR_0019s07270 (11)	scaffold_19:8249366-8249877(+) (11)	NA	P59278	Uncharacterized protein At1g51745	AT3G03140.1	Tudor/PWWP/MBT superfamily protein 	LOC_Os02g47170.1	expressed protein	Medtr4g106850.1	PWWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159025.1.A1_s_at	A	A1TS	POPTR_0006s24420	POPTR_0006s24420 (11)	scaffold_6:23037969-23039349(+) (11)	NA	O80983	"ATP-dependent zinc metalloprotease FTSH 4, mitochondrial"	AT2G26140.1	FTSH protease 4 	LOC_Os01g39260.1	"OsFtsH5  FtsH protease, homologue of AtFtsH4, expressed"	Medtr3g139920.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity	NA
PtpAffx.159029.1.A1_s_at	A	A1TS	POPTR_0014s01400	POPTR_0014s01400 (11)	scaffold_14:1363575-1363944(-) (11)	NA	Q801S4	Uncharacterized protein C22orf9 homolog	AT1G59520.1	CW7 	LOC_Os07g14514.3	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159029.2.A1_s_at	A	A1TS	POPTR_0014s01400	POPTR_0014s01400 (11)	scaffold_14:1360486-1361020(-) (11)	NA	Q801S4	Uncharacterized protein C22orf9 homolog	AT1G59520.1	CW7 	LOC_Os07g14514.3	"retrotransposon protein, putative, unclassified, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159032.2.S1_at	A	A1MS	POPTR_0008s08080	POPTR_0008s08080 (9)	scaffold_8:5032638-5033502(+) (9)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT1G79380.1	Ca(2)-dependent phospholipid-binding protein (Copine) family 	LOC_Os08g04130.1	"copine-6, putative, expressed"	Medtr6g093150.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
PtpAffx.159032.3.S1_a_at	A	A1TS	POPTR_0010s18200	POPTR_0010s18200 (11)	scaffold_10:16542002-16546516(-) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT1G79380.1	Ca(2)-dependent phospholipid-binding protein (Copine) family 	LOC_Os08g04130.1	"copine-6, putative, expressed"	Medtr6g093150.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159044.1.S1_at	A	A1TS	POPTR_0019s04840	POPTR_0019s04840 (11)	scaffold_19:5072792-5073129(+) (11)	NA	O75175	CCR4-NOT transcription complex subunit 3	AT5G18230.1	transcription regulator NOT2/NOT3/NOT5 family protein 	LOC_Os03g44900.1	"CCR4-NOT transcription factor, putative, expressed"	Medtr7g100260.1	"Not CCR4-Not complex component, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	GO:0005634|nucleus
PtpAffx.159051.1.S1_s_at	A	A1TS	POPTR_0005s25950	POPTR_0005s25950 (11)	scaffold_5:24132510-24134370(+) (11)	NA	NA	NA	AT1G75710.1	C2H2-like zinc finger protein 	LOC_Os04g59380.1	"ZOS4-14 - C2H2 zinc finger protein, expressed"	Medtr1g030900.1	"Zinc finger, C2H2-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159053.1.S1_at	A	A1TS	POPTR_0006s06860	POPTR_0006s06860 (11)	scaffold_6:4966326-4966626(-) (11)	NA	Q9NVG8	TBC1 domain family member 13	AT4G13730.1	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os01g68010.1	"TBC domain containing protein, expressed"	Medtr8g120430.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
PtpAffx.159057.1.S1_at	A	A1TS	POPTR_0006s29410	POPTR_0006s29410 (11)	scaffold_6:26779360-26779806(+) (11)	POPTR_0018s04080 (7)	Q8CGZ0	Calcium homeostasis endoplasmic reticulum protein	AT4G31200.1	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein 	LOC_Os06g46880.1	"surp module family protein, putative, expressed"	Medtr1g117220.1	SWAP/Surp; Regulation of nuclear pre-mRNA protein 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
PtpAffx.159062.1.S1_s_at	A	A1TS	POPTR_0008s15980	POPTR_0008s15980 (11)	scaffold_8:10665362-10666119(+) (11)	NA	NA	NA	AT3G22990.1	ARM repeat superfamily protein 	LOC_Os07g41900.1	expressed protein	AC233668_13.1	Armadillo-like helical AC233668.2 41900-46754 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159070.1.S1_s_at	A	A2TS	POPTR_0001s00640	POPTR_0001s00640 (11)//POPTR_0003s10840 (11)	scaffold_1:554577-555093(+) (11)//scaffold_3:11704394-11704861(-) (11)	NA	Q5R8W6	Luc7-like protein 3	AT5G51410.3	LUC7 N_terminus domain-containing protein 	LOC_Os07g27300.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159070.2.S1_at	A	A1MS	POPTR_0003s10840	POPTR_0003s10840 (10)	scaffold_3:11704145-11704378(-) (10)	NA	Q5R8W6	Luc7-like protein 3	AT5G51410.3	LUC7 N_terminus domain-containing protein 	LOC_Os07g27300.2	"RNA-binding protein Luc7-like, putative, expressed"	Medtr7g089940.1	LUC7 related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159072.1.S1_at	A	A1TS	POPTR_0015s06120	POPTR_0015s06120 (11)	scaffold_15:6403554-6404906(+) (11)	NA	Q7SXW0	Solute carrier family 25 member 39	AT4G27940.1	manganese tracking factor for mitochondrial SOD2 	LOC_Os08g29720.2	"mitochondrial carrier protein, putative, expressed"	Medtr3g124670.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15908.1.S1_at	A	A1TS	POPTR_0012s11330	POPTR_0012s11330 (11)	scaffold_12:11811730-11812220(+) (11)	NA	Q9FLT3	Germin-like protein subfamily 3 member 4	AT5G61750.1	RmlC-like cupins superfamily protein 	LOC_Os11g33110.1	"Cupin domain containing protein, expressed"	Medtr3g143310.1	Cupin region 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.159092.1.S1_a_at	A	A1TS	POPTR_0017s07220	POPTR_0017s07220 (11)	scaffold_17:5622465-5623341(+) (11)	NA	P17067	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.4	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr2g009540.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.159092.1.S1_at	A	A1TS	POPTR_0017s07220	POPTR_0017s07220 (9)	scaffold_17:5622237-5623599(+) (9)	NA	P17067	"Carbonic anhydrase, chloroplastic"	AT4G33580.1	beta carbonic anhydrase 5 	LOC_Os09g28910.4	"carbonic anhydrase, chloroplast precursor, putative, expressed"	Medtr2g009540.1	"Carbonic anhydrase, prokaryotic and plant "	GO:0015976|carbon utilization||GO:0008150|biological_process	GO:0004089|carbonate dehydratase activity||GO:0008270|zinc ion binding	NA
PtpAffx.15910.1.S1_a_at	A	A1TS	POPTR_0001s25220	POPTR_0001s25220 (11)	scaffold_1:24407213-24407862(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159104.1.S1_at	A	A1TS	POPTR_0008s05610	POPTR_0008s05610 (11)	scaffold_8:3255124-3255612(-) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT3G55430.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.159110.1.S1_at	A	A1TS	POPTR_0002s25600	POPTR_0002s25600 (9)	scaffold_2:22688912-22689522(+) (9)	POPTR_0014s18620 (7)	Q9C0C7	Activating molecule in BECN1-regulated autophagy protein 1	AT1G04140.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os02g18820.2	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr7g117620.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159115.1.A1_at	A	A1TS	POPTR_0008s16530	POPTR_0008s16530 (11)	scaffold_8:11095745-11096308(+) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g008860.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159119.1.S1_s_at	A	A1TS	POPTR_0010s10000	POPTR_0010s10000 (11)	scaffold_10:10588102-10588518(-) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159129.1.S1_at	A	A1TS	POPTR_0003s07610	POPTR_0003s07610 (10)	scaffold_3:9152456-9152940(+) (10)	NA	P49307	Rhizopine catabolism protein mocA	AT4G17370.1	Oxidoreductase family protein 	LOC_Os08g05280.1	"oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed"	Medtr8g105540.1	Bacterial glucose-fructose oxidoreductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.159135.1.S1_at	A	A1TS	POPTR_0010s11330	POPTR_0010s11330 (11)	scaffold_10:11627156-11627763(-) (11)	NA	Q39263	Zinc finger protein 4	AT1G66140.1	zinc finger protein 4 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	CU633465_4.1	"Zinc finger, C2H2-type CU633465.7 18485-19791 F EGN_Mt090430 200"	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.159138.1.A1_at	A	A1TS	POPTR_0004s14230	POPTR_0004s14230 (10)	scaffold_4:14709623-14710068(+) (10)	NA	Q9C810	PHD finger protein At1g33420	AT1G33420.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g65600.1	"PHD-finger domain containing protein, putative, expressed"	Medtr4g041260.1	"Protein of unknown function UPF0054; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159139.1.S1_at	A	A1MS	POPTR_0011s09190	POPTR_0011s09190 (9)	scaffold_11:11354997-11355585(-) (9)	NA	O43196	MutS protein homolog 5	AT3G20475.1	MUTS-homologue 5 	LOC_Os05g41880.1	"mutS domain V family protein, expressed"	Medtr5g100500.1	MutS III 	GO:0006298|mismatch repair||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0030983|mismatched DNA binding||GO:0005524|ATP binding	NA
PtpAffx.159160.1.S1_at	A	A1MS	POPTR_0001s33750	POPTR_0001s33750 (11)	scaffold_1:31914265-31915586(+) (11)	NA	Q9CLV5	Naphthoate synthase	AT1G60550.1	enoyl-CoA hydratase/isomerase D 	LOC_Os01g47350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g074190.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.159171.1.S1_at	A	A1TS	POPTR_0003s05500	POPTR_0003s05500 (10)	scaffold_3:6796792-6797792(+) (10)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.2	"coatomer subunit beta, putative, expressed"	AC234703_19.2	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
PtpAffx.159172.1.S1_s_at	A	A1TS	POPTR_0006s03850	POPTR_0006s03850 (11)	scaffold_6:2582883-2586555(+) (11)	NA	Q5ZJQ8	Ubiquitin-associated domain-containing protein 2	AT3G56740.1	Ubiquitin-associated (UBA) protein 	LOC_Os01g16330.1	"OsRhmbd2 - Putative Rhomboid homologue, expressed"	Medtr7g106540.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159172.2.S1_at	A	A1TS	POPTR_0016s03500	POPTR_0016s03500 (11)	scaffold_16:1871387-1873895(-) (11)	NA	Q5ZJQ8	Ubiquitin-associated domain-containing protein 2	AT2G41160.1	Ubiquitin-associated (UBA) protein 	LOC_Os01g16330.1	"OsRhmbd2 - Putative Rhomboid homologue, expressed"	Medtr7g106540.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159180.1.S1_at	A	A1TS	POPTR_0001s46550	POPTR_0001s46550 (10)	scaffold_1:46924692-46925400(+) (10)	NA	NA	NA	AT1G30680.1	toprim domain-containing protein 	LOC_Os06g45980.1	"toprim domain-containing protein, putative, expressed"	Medtr5g106820.1	TOPRIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15919.1.S1_s_at	A	A1TS	POPTR_0016s14410	POPTR_0016s14410 (11)	scaffold_16:13621451-13621775(-) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT5G01890.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os03g21730.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr7g080410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.159193.1.S1_at	A	A1TS	POPTR_0012s10630	POPTR_0012s10630 (11)	scaffold_12:11349987-11350793(+) (10)	NA	P97363	Serine palmitoyltransferase 2	AT5G23670.2	long chain base2 	LOC_Os11g31640.1	"serine palmitoyltransferase 2, putative, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.1592.1.S1_at	A	A1TS	POPTR_0008s05600	POPTR_0008s05600 (11)	scaffold_8:3251843-3252795(-) (11)	NA	P52409	"Glucan endo-1,3-beta-glucosidase"	AT3G55430.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os11g47820.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr7g027100.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.159201.1.S1_at	A	A1MS	POPTR_0009s11190	POPTR_0009s11190 (10)	scaffold_9:9382705-9383356(+) (10)	NA	NA	NA	AT2G26500.1	"cytochrome b6f complex subunit (petM), putative "	LOC_Os03g55720.2	"cytochrome b6f complex subunit, putative, expressed"	NA	NA	NA	NA	GO:0009512|cytochrome b6f complex
PtpAffx.159205.1.A1_at	A	A1TS	POPTR_0008s04760	POPTR_0008s04760 (10)	scaffold_8:2739730-2740220(-) (10)//scaffold_8:2748878-2749368(-) (10)	POPTR_0008s04750 (8)	NA	NA	AT3G12345.1	unknown protein; LOCATED IN: chloroplast; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g28950.1	expressed protein	Medtr1g146160.1	"FKBP-type peptidyl-prolyl cis-trans isomerase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159234.1.A1_at	A	A1TS	POPTR_0006s03250	POPTR_0006s03250 (11)	scaffold_6:2057232-2057596(-) (11)	NA	Q9SX20	Probable nitrite transporter At1g68570	AT1G68570.1	Major facilitator superfamily protein 	LOC_Os05g33960.1	"peptide transporter PTR2, putative, expressed"	Medtr7g105690.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.15925.1.S1_at	A	A1TS	POPTR_0005s17030	POPTR_0005s17030 (11)	scaffold_5:14128969-14129103(+) (11)	NA	NA	NA	AT1G78170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g09120.1	expressed protein	Medtr5g072600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15925.2.S1_at	A	A1TS	POPTR_0002s09660	POPTR_0002s09660 (10)	scaffold_1140:144-607(+) (11)//scaffold_2:6921562-6922021(+) (10)	POPTR_1140s00200 (7)	NA	NA	AT1G78170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g09120.1	expressed protein	Medtr5g072600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159267.1.A1_at	A	A1TS	POPTR_0002s03450	POPTR_0002s03450 (11)	scaffold_2:2137475-2137734(-) (11)	NA	NA	NA	AT5G66440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G34560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159290.1.A1_at	A	A1TS	POPTR_0016s04620	POPTR_0016s04620 (9)	scaffold_16:2715392-2715862(+) (9)	NA	NA	NA	AT3G57990.1	unknown protein; Has 1497 Blast hits to 1323 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 23; Fungi - 34; Plants - 61; Viruses - 0; Other Eukaryotes - 1375 (source: NCBI BLink). 	LOC_Os09g31458.1	expressed protein	Medtr5g014330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159299.1.A1_at	A	A1TS	POPTR_0004s17400	POPTR_0004s17400 (11)	scaffold_4:17608391-17609033(-) (11)	NA	Q0WLC6	"Pentatricopeptide repeat-containing protein At4g34830, chloroplastic"	AT4G34830.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g10170.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g098380.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159309.1.A1_at	A	A1TS	POPTR_0005s15850	POPTR_0005s15850 (11)	scaffold_5:12481955-12483351(-) (11)	NA	Q56YP2	Phosphatidylinositol-4-phosphate 5-kinase 1	AT1G77660.1	Histone H3 K4-specific methyltransferase SET7/9 family protein 	LOC_Os09g28060.1	"MORN repeat domain containing protein, expressed"	Medtr3g097730.1	MORN motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159323.1.A1_at	A	A1TS	POPTR_0008s04660	POPTR_0008s04660 (11)	scaffold_8:2671479-2672509(-) (11)	NA	Q8H8U5	Protein IN2-1 homolog B	AT3G55040.1	glutathione transferase lambda 2 	LOC_Os03g17470.1	"IN2-1 protein, putative, expressed"	Medtr1g146570.1	"Glutathione S-transferase, C-terminal-like; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159335.1.A1_at	A	A1MS	POPTR_0002s19240	POPTR_0002s19240 (9)	scaffold_2:15165658-15166069(+) (9)	NA	Q8LEK2	Uncharacterized FAM18-like protein At1g09330	AT1G09330.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF846, eukaryotic (InterPro:IPR008564); Has 518 Blast hits to 518 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193; Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). "	LOC_Os01g22870.1	expressed protein	Medtr1g102730.1	"Protein of unknown function DUF846, eukaryotic "	NA	NA	GO:0016021|integral to membrane
PtpAffx.159337.1.A1_at	A	A1TS	POPTR_0015s11550	POPTR_0015s11550 (10)	scaffold_15:12116655-12117216(-) (10)	NA	Q93W88	Transcription factor bHLH137	AT5G50915.2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os09g33580.2	"BEE 1, putative, expressed"	Medtr4g152040.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.159340.1.A1_at	A	A1TS	POPTR_0003s04740	POPTR_0003s04740 (11)	scaffold_3:5756215-5756746(-) (11)	NA	NA	NA	AT3G16350.1	Homeodomain-like superfamily protein 	LOC_Os01g09280.1	"myb-related transcription activator, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159345.1.A1_at	A	A1TS	POPTR_0006s23480	POPTR_0006s23480 (11)	scaffold_6:22193296-22193809(+) (11)	NA	Q84QC2	Ethylene-responsive transcription factor ERF017	AT1G19210.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g54050.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr3g138910.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.159361.1.A1_at	A	A1TS	POPTR_0001s43290	POPTR_0001s43290 (11)	scaffold_1:43336930-43337650(-) (11)	NA	B9SV63	UPF0497 membrane protein 15	AT5G44550.1	Uncharacterised protein family (UPF0497) 	LOC_Os12g41690.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g137870.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159394.1.A1_at	A	A1TS	POPTR_0006s20550	POPTR_0006s20550 (11)	scaffold_6:19578795-19579284(+) (11)	NA	NA	NA	AT5G06790.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os09g10730.1	expressed protein	Medtr7g111720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159420.1.A1_at	A	A1TS	POPTR_0006s03200	POPTR_0006s03200 (11)	scaffold_6:2015360-2015806(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT5G07050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr8g044450.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
PtpAffx.159421.1.A1_at	A	A1MS	POPTR_0006s01000	POPTR_0006s01000 (10)	scaffold_6:560935-561278(+) (10)	NA	Q9M1H3	ABC transporter F family member 4	AT3G54540.1	general control non-repressible 4 	LOC_Os03g32630.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g089230.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
PtpAffx.15943.1.S1_s_at	A	A1TS	POPTR_0001s04940	POPTR_0001s04940 (11)	scaffold_1:3773907-3775011(-) (11)	NA	Q9SFU6	Callose synthase 9	AT3G07160.1	glucan synthase-like 10 	LOC_Os06g08380.1	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
PtpAffx.159432.1.S1_s_at	A	A1TS	POPTR_0008s12470	POPTR_0008s12470 (11)	scaffold_8:8064981-8066877(-) (11)	NA	Q3ED68	Uncharacterized PKHD-type hydroxylase At1g22950	AT3G18210.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g31770.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr6g086260.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159450.1.A1_at	A	A1TS	POPTR_0008s04490	POPTR_0008s04490 (10)	scaffold_8:2530799-2531992(-) (10)	NA	P47927	Floral homeotic protein APETALA 2	AT2G28550.3	related to AP2.7 	LOC_Os05g03040.1	"AP2 domain containing protein, expressed"	Medtr7g120800.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.159468.1.A1_at	A	A1TS	POPTR_0017s07370	POPTR_0017s07370 (10)	scaffold_17:5749858-5749893(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159473.1.A1_at	A	A1TS	POPTR_0015s04320	POPTR_0015s04320 (11)	scaffold_15:4407822-4408039(-) (11)	NA	Q9SUC9	Uncharacterized GPI-anchored protein At4g28100	AT3G18050.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28100.1); Has 67 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g37156.1	expressed protein	Medtr4g155370.1	"Uncharacterized GPI-anchored protein At4g28100 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159492.1.A1_at	A	A1TS	POPTR_0003s14330	POPTR_0003s14330 (11)	scaffold_3:14423629-14424392(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15950.1.S1_at	A	A1TS	POPTR_0014s10600	POPTR_0014s10600 (11)	scaffold_14:7892856-7893205(-) (11)	NA	Q9M263	Germin-like protein subfamily 2 member 4	AT3G62020.1	germin-like protein 10 	LOC_Os05g19670.1	"Cupin domain containing protein, expressed"	Medtr1g103240.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.15950.2.S1_s_at	A	A1TS	POPTR_0002s18570	POPTR_0002s18570 (11)	scaffold_2:14445452-14445865(-) (11)	NA	Q9M263	Germin-like protein subfamily 2 member 4	AT3G62020.1	germin-like protein 10 	LOC_Os05g19670.1	"Cupin domain containing protein, expressed"	Medtr1g103240.1	Germin 	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.159530.1.A1_at	A	A1TS	POPTR_0017s04810	POPTR_0017s04810 (11)	scaffold_17:3705651-3705796(-) (11)	NA	Q9H0R5	Guanylate-binding protein 3	AT5G46070.1	Guanylate-binding family protein 	LOC_Os02g20410.1	"GTP binding protein, putative, expressed"	Medtr1g083290.1	"guanylate-binding family protein, putative "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.159532.1.A1_at	A	A1TS	POPTR_0004s08960	POPTR_0004s08960 (11)	scaffold_4:7521175-7523283(+) (11)	NA	O82782	"1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic"	AT2G36230.1	Aldolase-type TIM barrel family protein 	LOC_Os05g33260.3	"1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed"	Medtr2g018490.1	"Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0000105|histidine biosynthetic process	NA	NA
PtpAffx.159533.1.A1_at	A	A1TS	POPTR_0001s03780	POPTR_0001s03780 (11)	scaffold_1:3064396-3064723(-) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159539.1.S1_at	A	A1TS	POPTR_0012s02140	POPTR_0012s02140 (11)	scaffold_12:1778823-1778990(-) (11)	NA	O35685	Nuclear migration protein nudC	AT5G53400.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159539.1.S1_s_at	A	A1TS	POPTR_0012s02140	POPTR_0012s02140 (10)	scaffold_12:1778878-1779081(-) (10)	NA	O35685	Nuclear migration protein nudC	AT5G53400.1	HSP20-like chaperones superfamily protein 	LOC_Os06g12530.1	"CS domain containing protein, putative, expressed"	Medtr1g009310.1	CS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15954.1.A1_at	A	A1TS	POPTR_0012s11640	POPTR_0012s11640 (11)	scaffold_12:11982449-11983831(-) (11)	NA	B9NAN0	"Arginine biosynthesis bifunctional protein ArgJ, chloroplastic"	AT2G37500.1	arginine biosynthesis protein ArgJ family 	LOC_Os03g17120.1	"arginine biosynthesis bifunctional protein argJ 1, putative, expressed"	AC233662_37.1	Arginine biosynthesis protein ArgJ AC233662.1 191889-184516 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006526|arginine biosynthetic process	GO:0004358|glutamate N-acetyltransferase activity	NA
PtpAffx.159543.1.A1_at	A	A1TS	POPTR_0006s10200	POPTR_0006s10200 (11)	scaffold_6:7558411-7558708(-) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235756_21.1	2OG-Fe(II) oxygenase AC235756.1 149509-155143 H EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159543.2.A1_a_at	A	A2TS	POPTR_0006s10200	POPTR_0006s10210 (11)//POPTR_0006s10200 (11)	scaffold_6:7558935-7559018(-) (11)//scaffold_6:7591600-7591683(+) (11)	NA	P51091	Leucoanthocyanidin dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g61610.3	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235756_21.1	2OG-Fe(II) oxygenase AC235756.1 149509-155143 H EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159543.2.A1_at	A	A1TS	POPTR_0006s10210	POPTR_0006s10210 (11)	scaffold_6:7591927-7592228(+) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT5G05600.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g03640.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	AC235756_21.1	2OG-Fe(II) oxygenase AC235756.1 149509-155143 H EGN_Mt090430 200	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159549.1.A1_at	A	A1TS	POPTR_0010s19000	POPTR_0010s19000 (10)	scaffold_10:17055420-17055461(+) (10)	NA	NA	NA	AT5G05365.1	Heavy metal transport/detoxification superfamily protein  	LOC_Os01g61070.1	"heavy metal-associated domain containing protein, expressed"	Medtr5g091130.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
PtpAffx.15957.1.S1_at	A	A1TS	POPTR_0015s09550	POPTR_0015s09550 (11)	scaffold_15:10744415-10744897(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15957.2.S1_at	A	A1TS	POPTR_0015s09540	POPTR_0015s09540 (11)	scaffold_15:10739021-10739110(+) (11)	NA	O61967	Protein lap1	AT3G11330.1	plant intracellular ras group-related LRR 9 	LOC_Os04g40080.1	"leucine rich repeat containing protein, expressed"	Medtr3g114800.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.159575.1.A1_at	A	A1TS	POPTR_0001s09800	POPTR_0001s09800 (11)	scaffold_1:7535368-7536020(-) (11)	NA	Q39024	Mitogen-activated protein kinase 4	AT4G01370.1	MAP kinase 4 	LOC_Os08g06060.1	"CGMC_MAPKCMGC_2_ERK.13 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g088400.1	Serine/threonine protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159602.1.A1_at	A	A1TS	POPTR_0021s00680	POPTR_0021s00680 (11)	scaffold_21:368746-368972(+) (11)	NA	Q8RWZ5	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5	AT4G32300.1	S-domain-2 5 	LOC_Os04g23700.1	"lectin protein kinase family protein, putative, expressed"	Medtr3g137100.1	Protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159630.1.A1_at	A	A1TS	POPTR_0010s23380	POPTR_0010s23380 (11)	scaffold_10:19983578-19984168(-) (11)	NA	Q93YU5	Probable exocyst complex component 4	AT3G10380.1	subunit of exocyst complex 8 	LOC_Os08g22864.1	"sec8 exocyst complex component specific domain containing protein, expressed"	Medtr5g017660.1	hypothetical protein 	GO:0006904|vesicle docking during exocytosis||GO:0015031|protein transport	NA	GO:0000145|exocyst
PtpAffx.159635.1.A1_at	A	A1TS	POPTR_0014s09180	POPTR_0014s09180 (11)	scaffold_14:6809207-6809378(+) (11)	NA	Q9AR73	Hydroquinone glucosyltransferase	AT4G01070.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os11g38650.1	"UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed"	Medtr8g008800.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159638.1.A1_at	A	A1TS	POPTR_0008s03240	POPTR_0008s03240 (11)	scaffold_8:1704119-1704670(-) (11)	NA	NA	NA	AT5G22930.1	Protein of unknown function (DUF1635) 	LOC_Os05g02450.1	expressed protein	Medtr4g076380.1	Protein of unknown function DUF1635 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159650.1.A1_a_at	A	A1TS	POPTR_0016s08560	POPTR_0016s08560 (11)	scaffold_16:6360371-6360462(-) (11)	NA	O95628	CCR4-NOT transcription complex subunit 4	AT3G45630.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os12g01190.3	"RNA recognition motif containing protein, putative, expressed"	Medtr4g080070.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.159657.1.A1_at	A	A1TS	POPTR_0013s00400	POPTR_0013s00400 (11)	scaffold_13:163400-165687(+) (11)	NA	P18549	Isopenicillin N epimerase	AT5G26600.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os01g18640.2	"aminotransferase, putative, expressed"	Medtr7g134940.1	"Aminotransferase, class V; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.15966.1.S1_at	A	A1TS	POPTR_0011s09840	POPTR_0011s09840 (11)	scaffold_11:12277525-12278619(-) (11)	NA	Q54WR5	Coiled-coil domain-containing protein 94 homolog	AT1G17130.1	Family of unknown function (DUF572)  	LOC_Os01g40610.1	"coiled-coil domain-containing protein, putative, expressed"	Medtr8g008480.1	Protein of unknown function DUF572 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159667.2.A1_a_at	A	A1TS	POPTR_0010s10550	POPTR_0010s10550 (11)	scaffold_10:11050605-11051190(-) (11)	NA	Q27GI3	Nucleobase-ascorbate transporter 6	AT5G62890.3	Xanthine/uracil permease family protein 	LOC_Os08g32500.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g073630.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.159678.1.A1_at	A	A1TS	POPTR_0013s06320	POPTR_0013s06320 (11)	scaffold_13:4798118-4798500(-) (11)	NA	Q9FDW1	Transcription factor MYB44	AT5G17800.1	myb domain protein 56 	LOC_Os01g16810.1	"MYB family transcription factor, putative, expressed"	Medtr7g103750.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159685.1.A1_at	A	A1TS	POPTR_0014s16290	POPTR_0014s16290 (11)	scaffold_14:12392933-12393452(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g105020.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159704.1.A1_at	A	A1TS	POPTR_0006s14650	POPTR_0006s14650 (11)	scaffold_6:12009995-12010140(+) (11)	NA	Q9LF64	RING-H2 finger protein ATL52	AT5G17600.1	RING/U-box superfamily protein 	LOC_Os02g15060.1	"zinc finger, C3HC4 type domain containing protein"	Medtr5g026890.1	"Putative RING-H2 finger protein ATL1H precursor, "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159716.1.A1_at	A	A1TS	POPTR_0005s06690	POPTR_0005s06690 (11)	scaffold_5:4486572-4487408(-) (11)	NA	Q9LRE6	DNA polymerase delta catalytic subunit	AT5G63960.1	DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases 	LOC_Os11g08330.1	"POLD1 - Putative DNA polymerase delta catalytic subunit, expressed"	Medtr3g143070.1	DNA-directed DNA polymerase B 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0000166|nucleotide binding||GO:0003887|DNA-directed DNA polymerase activity	NA
PtpAffx.159717.1.A1_s_at	A	A1TS	POPTR_0007s01760	POPTR_0007s01760 (11)	scaffold_7:1024831-1025353(+) (11)	NA	Q04088	Probable transcription factor PosF21	AT1G06070.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os09g34060.1	"transcription factor RF2a, putative, expressed"	Medtr2g118430.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.159733.1.A1_at	A	A1TS	POPTR_0001s27870	POPTR_0001s27870 (11)	scaffold_1:26733580-26734239(-) (11)	NA	Q54FQ8	Translation initiation factor eIF-2B subunit gamma	AT5G19485.1	transferases;nucleotidyltransferases 	LOC_Os06g23160.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr4g133990.1	Bacterial transferase hexapeptide repeat 	NA	GO:0016740|transferase activity	NA
PtpAffx.159753.1.A1_at	A	A1TS	POPTR_0008s14170	POPTR_0008s14170 (9)	scaffold_8:9353087-9353442(-) (9)	NA	NA	NA	AT1G75010.1	GTP binding 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159768.1.A1_at	A	A1TS	POPTR_0002s01580	POPTR_0002s01580 (11)	scaffold_2:853746-854054(+) (11)	NA	Q6CC39	tRNA pseudouridine synthase 1	AT1G20370.1	Pseudouridine synthase family protein 	LOC_Os02g44810.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr8g145890.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
PtpAffx.159780.1.A1_at	A	A1TS	POPTR_0011s05430	POPTR_0011s05430 (11)	scaffold_11:5372397-5372798(+) (11)	NA	Q93Z00	Transcription factor TCP14	AT3G47620.1	"TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 "	LOC_Os02g51280.1	"TCP-domain protein, putative, expressed"	Medtr8g112560.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159782.1.A1_at	A	A1TS	POPTR_0018s14750	POPTR_0018s14750 (10)	scaffold_18:14845572-14845906(+) (10)	NA	NA	NA	AT5G58100.1	unknown protein; INVOLVED IN: pollen exine formation; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os02g26984.1	expressed protein	Medtr5g019420.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159785.1.A1_at	A	A1MS	POPTR_0006s19200	POPTR_0006s19200 (10)	scaffold_6:18179385-18179921(-) (10)	NA	NA	NA	AT1G67170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). 	LOC_Os04g40300.1	"transglutaminase, putative, expressed"	Medtr2g071550.1	"Protein kinase PKN/PRK1, effector, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159803.1.A1_at	A	A1TS	POPTR_0002s14370	POPTR_0002s14370 (11)	scaffold_2:10637653-10638190(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159811.1.A1_s_at	A	A1TS	POPTR_0001s06740	POPTR_0001s06740 (11)	scaffold_1:5159060-5159226(-) (11)	NA	NA	NA	AT5G06970.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159812.1.A1_at	A	A1TA	POPTR_0007s06520	POPTR_0007s06520 (11)	scaffold_7:4897792-4898110(-) (11)	NA	NA	NA	AT5G09995.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g12129.1	expressed protein	Medtr3g144930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159822.1.A1_at	A	A1TS	POPTR_0010s05610	POPTR_0010s05610 (9)	scaffold_10:7052532-7052856(+) (9)	NA	NA	NA	AT1G70620.3	cyclin-related 	NA	NA	Medtr8g081860.1	Reticulon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159828.1.A1_at	A	A1TS	POPTR_0008s14190	POPTR_0008s14190 (11)	scaffold_8:9374717-9375237(-) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G02070.1	indeterminate(ID)-domain 5 	LOC_Os09g38340.3	"ZOS9-17 - C2H2 zinc finger protein, expressed"	Medtr1g039670.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.15983.1.A1_at	A	A2TA	POPTR_0002s07650	POPTR_0002s07650 (9)//POPTR_0002s07660 (9)	scaffold_2:5230082-5230291(+) (9)//scaffold_2:5237659-5237868(+) (9)	POPTR_0002s07670 (6)	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.15983.1.S1_s_at	A	A2TS	POPTR_0002s07650	POPTR_0002s07650 (11)//POPTR_0002s07660 (11)	scaffold_2:5230172-5230236(-) (11)//scaffold_2:5237749-5237813(-) (11)	NA	Q9LMP1	Wall-associated receptor kinase 2	AT1G21270.1	wall-associated kinase 2 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159831.1.A1_at	A	A1TS	POPTR_0009s08430	POPTR_0009s08430 (10)	scaffold_9:7726748-7727190(+) (10)	NA	Q9M0Z3	"K(+) efflux antiporter 3, chloroplastic"	AT4G04850.2	K+ efflux antiporter 3 	LOC_Os12g42300.1	"potasium efflux antiporter protein, putative, expressed"	Medtr4g121870.1	TrkA-N; Sodium/hydrogen exchanger 	GO:0006813|potassium ion transport	GO:0015299|solute:hydrogen antiporter activity	GO:0016021|integral to membrane
PtpAffx.159832.1.A1_a_at	A	A1TS	POPTR_0018s03720	POPTR_0018s03720 (11)	scaffold_18:3165705-3168811(+) (11)	NA	Q5RC30	Signal peptidase complex catalytic subunit SEC11C	AT1G52600.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os06g16260.1	"OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed"	Medtr2g126230.1	"Peptidase S24, S26A and S26B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159837.1.A1_at	A	A1TS	POPTR_0019s00460	POPTR_0019s00460 (9)	scaffold_19:255313-255662(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159839.1.A1_at	A	A1MS	POPTR_0002s24820	POPTR_0002s24820 (11)	scaffold_2:22072030-22072199(+) (11)	NA	Q9FJK7	Cyclin-C1-2	AT5G48630.1	Cyclin family protein 	LOC_Os09g32680.1	"cyclin, putative, expressed"	Medtr7g062090.1	"Cyclin, N-terminal; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159847.1.A1_a_at	A	A1TS	POPTR_0002s10830	POPTR_0002s10830 (11)	scaffold_2:7855067-7855420(-) (11)	NA	NA	NA	AT1G27590.1	CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G27570.1); Has 109 Blast hits to 109 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g49940.2	"ESP4, putative, expressed"	Medtr3g127790.1	"T17H3.9, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159854.1.A1_s_at	A	A1TS	POPTR_0019s08410	POPTR_0019s08410 (9)	scaffold_19:9933778-9934293(-) (9)	NA	O36015	Putative ribosomal RNA methyltransferase C4F10.03c	AT5G01230.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g49140.1	"ribosomal RNA large subunit methyltransferase J, putative, expressed"	Medtr2g015180.1	Ribosomal RNA methyltransferase RrmJ/FtsJ 	GO:0032259|methylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0008168|methyltransferase activity	NA
PtpAffx.159863.1.A1_at	A	A1TS	POPTR_0022s00700	POPTR_0022s00700 (10)	scaffold_22:332903-333316(+) (10)	NA	NA	NA	AT3G02430.1	Protein of unknown function (DUF679) 	LOC_Os08g01530.1	expressed protein	Medtr2g018110.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159874.1.A1_s_at	A	A1TS	POPTR_0014s16280	POPTR_0014s16280 (11)	scaffold_14:12370810-12371676(-) (11)	NA	P36183	Endoplasmin homolog	AT3G07770.1	HEAT SHOCK PROTEIN 89.1 	LOC_Os12g32986.1	"heat shock protein, putative, expressed"	Medtr5g105030.2	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
PtpAffx.159891.1.A1_at	A	A1TS	POPTR_0004s00670	POPTR_0004s00670 (10)	scaffold_4:266962-270733(+) (10)	NA	Q9P281	BAH and coiled-coil domain-containing protein 1	AT4G22140.2	PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein 	LOC_Os09g21770.1	"ES43 protein, putative, expressed"	Medtr3g162860.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.159900.1.A1_a_at	A	A1TS	POPTR_0005s04910	POPTR_0005s04910 (11)	scaffold_5:3284441-3284520(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159900.1.A1_at	A	A1TS	POPTR_0005s04910	POPTR_0005s04910 (11)	scaffold_5:3284064-3284200(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159900.2.A1_at	A	A1MS	POPTR_0005s04910	POPTR_0005s04910 (11)	scaffold_5:3284535-3284791(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT1G08720.1	Protein kinase superfamily protein 	LOC_Os03g06410.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.159905.1.A1_at	A	A1TS	POPTR_0001s45600	POPTR_0001s45600 (10)	scaffold_1:46112901-46113576(-) (11)	NA	Q9ZWQ9	Flavonol synthase/flavanone 3-hydroxylase	AT4G10500.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os04g49210.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.159910.1.A1_at	A	A1TS	POPTR_0001s03350	POPTR_0001s03350 (11)	scaffold_1:2728726-2728933(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159911.2.A1_at	A	A1TS	POPTR_0001s28870	POPTR_0001s28870 (11)	scaffold_1:27639873-27640844(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT2G30140.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g59110.1	"indole-3-acetate beta-glucosyltransferase, putative, expressed"	Medtr5g081060.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159912.1.A1_at	A	A1MS	POPTR_0004s01760	POPTR_0004s01760 (10)	scaffold_4:1064199-1064680(-) (10)	NA	Q8LE47	"Pentatricopeptide repeat-containing protein At1g61870, mitochondrial"	AT1G61870.1	pentatricopeptide repeat 336 	LOC_Os01g58080.3	"membrane-associated salt-inducible protein, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159916.1.A1_at	A	A1TS	POPTR_0001s30200	POPTR_0001s30200 (11)	scaffold_1:28736637-28736964(+) (11)	NA	NA	NA	AT3G19615.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 10 Blast hits to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159918.1.A1_at	A	A1TS	POPTR_0013s01820	POPTR_0013s01820 (10)	scaffold_13:1045567-1047099(-) (10)	NA	Q9Z0F6	Cell cycle checkpoint control protein RAD9A	AT3G05480.1	cell cycle checkpoint control protein family 	LOC_Os03g22450.1	"auxin response factor 75, putative, expressed"	Medtr7g138910.1	Rad9 	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	NA	NA
PtpAffx.159923.1.A1_at	A	A3MA	POPTR_0010s06010	POPTR_0010s06010 (11)//POPTR_0010s06030 (10)//POPTR_0010s06060 (9)	scaffold_10:7450132-7450691(-) (11)//scaffold_10:7458857-7459416(-) (10)//scaffold_10:7479755-7487670(-) (10)	POPTR_0010s06050 (8)//POPTR_0395s00200 (7)	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159932.1.A1_at	A	A1TA	POPTR_0010s09810	POPTR_0010s09810 (9)	scaffold_10:10437585-10438698(+) (9)	POPTR_0008s15200 (6)	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159933.1.A1_at	A	A1TS	POPTR_0011s14650	POPTR_0011s14650 (11)	scaffold_11:16991301-16991667(+) (11)	NA	Q6NVR9	ATPase family AAA domain-containing protein 3	AT5G16930.1	AAA-type ATPase family protein 	LOC_Os02g46990.1	"AAA-type ATPase family protein, putative, expressed"	Medtr4g107260.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.159935.1.A1_at	A	A1TS	POPTR_0006s28880	POPTR_0006s28880 (11)	scaffold_6:26414691-26415277(-) (11)//scaffold_6:26433843-26434429(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159940.1.A1_s_at	A	A1TS	POPTR_0004s07720	POPTR_0004s07720 (11)	scaffold_4:6351054-6351356(+) (11)	NA	NA	NA	AT5G52530.3	dentin sialophosphoprotein-related 	LOC_Os08g33320.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159941.1.A1_at	A	A1MS	POPTR_0007s02660	POPTR_0007s02660 (11)	scaffold_7:1560078-1560600(-) (11)	NA	Q55B06	SPX and EXS domain-containing protein 1	AT5G35730.1	EXS (ERD1/XPR1/SYG1) family protein 	LOC_Os12g40340.1	"EXS family protein, putative, expressed"	Medtr7g084230.1	"EXS, C-terminal "	NA	NA	GO:0016021|integral to membrane
PtpAffx.159944.1.A1_a_at	A	A1TS	POPTR_0007s06010	POPTR_0007s06010 (11)	scaffold_7:4160251-4160911(-) (11)	NA	Q9SNC6	U-box domain-containing protein 13	AT2G22125.1	binding 	LOC_Os06g11990.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159944.1.A1_at	A	A1MS	POPTR_0007s06010	POPTR_0007s06010 (11)	scaffold_7:4160459-4160940(-) (11)	NA	Q9SNC6	U-box domain-containing protein 13	AT2G22125.1	binding 	LOC_Os06g11990.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.159946.1.A1_at	A	A1TS	POPTR_0006s25530	POPTR_0006s25530 (11)	scaffold_6:23927066-23928587(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G25820.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	Medtr4g159530.1	Exostosin-like 	NA	NA	GO:0016020|membrane
PtpAffx.159951.1.A1_at	A	A1TS	POPTR_0010s23010	POPTR_0010s23010 (11)	scaffold_10:19705720-19706253(-) (11)	NA	O82632	GATA transcription factor 9	AT4G32890.1	GATA transcription factor 9 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr1g120760.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
PtpAffx.159967.1.A1_s_at	A	A1TS	POPTR_0004s18420	POPTR_0004s18420 (11)	scaffold_4:18330750-18330858(+) (11)	NA	Q8BFY9	Transportin-1	AT2G16950.2	transportin 1 	LOC_Os04g59494.4	"transportin-2, putative, expressed"	Medtr2g006800.1	Armadillo-like helical 	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
PtpAffx.159991.1.A1_at	A	A1TS	POPTR_0001s15630	POPTR_0001s15630 (11)	scaffold_1:12472384-12472821(-) (11)	NA	NA	NA	AT2G01410.1	NHL domain-containing protein 	LOC_Os01g42140.1	expressed protein	Medtr7g020710.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1600.1.S1_at	A	A1TS	POPTR_0015s14680	POPTR_0015s14680 (10)	scaffold_15:14189874-14190212(+) (10)	NA	P17407	21 kDa protein	AT5G62360.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010230.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
PtpAffx.160011.1.A1_at	A	A1TS	POPTR_0006s19870	POPTR_0006s19870 (9)	scaffold_6:18878924-18878999(-) (11)	NA	Q9AXJ4	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
PtpAffx.160019.1.A1_at	A	A1TS	POPTR_0013s03180	POPTR_0013s03180 (11)	scaffold_13:1938359-1938560(-) (11)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT3G05020.1	acyl carrier protein 1 	LOC_Os12g34890.1	"acyl carrier protein, putative, expressed"	Medtr2g025430.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
PtpAffx.160019.1.A1_s_at	A	A1TS	POPTR_0013s03180	POPTR_0013s03180 (10)	scaffold_13:1938475-1940016(-) (10)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT3G05020.1	acyl carrier protein 1 	LOC_Os12g34890.1	"acyl carrier protein, putative, expressed"	Medtr2g025430.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
PtpAffx.160055.1.A1_a_at	A	A1TS	POPTR_0014s02780	POPTR_0014s02780 (11)	scaffold_14:2312097-2312756(-) (11)	NA	NA	NA	AT1G45207.2	Remorin family protein 	LOC_Os02g52810.1	"remorin C-terminal domain containing protein, putative, expressed"	Medtr1g024260.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160055.3.A1_a_at	A	A1TS	POPTR_0002s12690	POPTR_0002s12690 (11)	scaffold_2:9458803-9459010(-) (11)	NA	NA	NA	AT1G45207.2	Remorin family protein 	LOC_Os02g52810.1	"remorin C-terminal domain containing protein, putative, expressed"	Medtr1g024260.1	"Remorin, C-terminal region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160058.2.A1_at	A	A1TS	POPTR_0001s18470	POPTR_0001s18470 (11)	scaffold_1:15523613-15523764(-) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.16006.1.A1_at	A	A1TS	POPTR_0006s07850	POPTR_0006s07850 (11)	scaffold_6:5746102-5746864(+) (11)	NA	O14053	Uncharacterized WD repeat-containing protein C1672.07	AT4G04940.1	transducin family protein / WD-40 repeat family protein 	LOC_Os06g43690.1	"WD repeat-containing protein, putative, expressed"	Medtr2g014320.1	"Photosynthetic reaction centre, cytochrome c subunit; WD40-like "	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
PtpAffx.160061.1.A1_at	A	A1TS	POPTR_0002s25050	POPTR_0002s25050 (9)	scaffold_2:22249006-22249272(-) (9)	NA	P49211	60S ribosomal protein L32-1	AT4G18100.1	Ribosomal protein L32e 	LOC_Os09g32532.2	"60S ribosomal protein L32, putative, expressed"	Medtr4g134080.1	Ribosomal protein L32e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.160068.1.A1_s_at	A	A1TS	POPTR_0013s01520	POPTR_0013s01520 (11)	scaffold_13:860674-861916(-) (11)	NA	P42791	60S ribosomal protein L18-2	AT3G05590.1	ribosomal protein L18 	LOC_Os03g22180.1	"60S ribosomal protein L18-3, putative, expressed"	Medtr7g138670.1	Ribosomal protein L18e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.160068.2.S1_at	A	A1MS	POPTR_0002s00440	POPTR_0002s00440 (9)	scaffold_2:162060-162684(-) (10)	NA	Q8RY95	Squamosa promoter-binding-like protein 14	AT1G20980.1	squamosa promoter binding protein-like 14 	LOC_Os08g40260.1	"OsSPL15 - SBP-box gene family member, expressed"	Medtr1g039740.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
PtpAffx.160085.1.A1_at	A	A1TS	POPTR_0016s04010	POPTR_0016s04010 (11)	scaffold_16:2249353-2249510(-) (11)	NA	P93002	Regulatory protein NPR1	AT2G41370.1	Ankyrin repeat family protein / BTB/POZ domain-containing protein 	LOC_Os01g72020.1	"BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr7g107020.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.160090.1.A1_at	A	A1MS	POPTR_0009s16370	POPTR_0009s16370 (11)	scaffold_9:12463781-12464201(-) (11)	NA	NA	NA	AT5G22210.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160091.2.A1_a_at	A	A1TS	POPTR_0006s29250	POPTR_0006s29250 (11)	scaffold_6:26682082-26683101(-) (11)	NA	Q99090	Light-inducible protein CPRF2	AT5G24800.1	basic leucine zipper 9 	LOC_Os02g07840.2	"bZIP transcription factor domain containing protein, expressed"	Medtr1g010030.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
PtpAffx.1601.11.A1_at	A	A1TA	POPTR_0608s00210	POPTR_0608s00210 (11)	scaffold_12:4351713-4352162(-) (11)//scaffold_3:4966353-4966808(+) (11)//scaffold_608:7488-7936(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1601.13.S1_a_at	A	A1TS	POPTR_0010s19920	POPTR_0010s19920 (11)	scaffold_10:17683699-17684991(+) (11)	NA	Q6GV12	3-ketodihydrosphingosine reductase	AT3G06060.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os02g47350.1	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr3g151090.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
PtpAffx.1601.17.S1_at	A	A1TS	POPTR_0001s34560	POPTR_0001s34560 (11)	scaffold_1:32745074-32745309(-) (11)	NA	Q9D081	UDP-N-acetylglucosamine transferase subunit ALG14 homolog	AT4G18230.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligosaccharide biosynthesis protein Alg14 like (InterPro:IPR013969); Has 640 Blast hits to 640 proteins in 277 species: Archae - 4; Bacteria - 281; Metazoa - 94; Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). 	LOC_Os03g30934.5	"UDP-N-acetylglucosamine transferase subunit ALG14, putative, expressed"	Medtr2g126390.1	Oligosaccharide biosynthesis protein Alg14 like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1601.18.A1_at	A	A1TS	POPTR_0009s15460	POPTR_0009s15460 (11)	scaffold_9:11953799-11954112(+) (11)	NA	Q8C0D5	Elongation factor Tu GTP-binding domain-containing protein 1	AT3G22980.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os03g44780.1	"elongation factor Tu family protein, putative, expressed"	Medtr8g139230.1	"Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.1601.19.S1_at	A	A1TS	POPTR_0004s24270	POPTR_0004s24270 (11)	scaffold_4:22965412-22966647(+) (11)	NA	NA	NA	AT4G19390.1	Uncharacterised protein family (UPF0114) 	LOC_Os06g49640.1	"uncharacterized UPF0114 domain containing protein, expressed"	Medtr5g025800.1	Uncharacterized protein UPF0114 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1601.21.S1_s_at	A	A1TS	POPTR_0002s06080	POPTR_0002s06080 (11)	scaffold_2:4075106-4075419(+) (11)	NA	Q9SJG9	Mitogen-activated protein kinase 20	AT2G42880.1	MAP kinase 20 	LOC_Os01g43910.1	"CGMC_MAPKCMGC_2.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr3g119710.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.1601.22.S1_at	A	A1MS	POPTR_0008s05870	POPTR_0008s05870 (11)	scaffold_8:3449410-3449849(-) (11)	NA	Q7X999	"Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic"	AT2G39730.2	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.1601.4.A1_s_at	A	A1TS	POPTR_0010s20810	POPTR_0010s20810 (11)	scaffold_10:18261121-18261155(+) (11)	NA	Q7X9A0	"Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic"	AT2G39730.1	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.1601.6.A1_a_at	A	A1MS	POPTR_0010s20810	POPTR_0010s20810 (11)	scaffold_10:18260978-18261013(+) (11)	NA	Q7X9A0	"Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic"	AT2G39730.1	rubisco activase 	LOC_Os11g47970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr5g087780.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
PtpAffx.1601.7.S1_at	A	A1TS	POPTR_0001s13800	POPTR_0001s13800 (11)	scaffold_1:10892928-10893562(+) (11)	NA	P13869	"Chlorophyll a-b binding protein, chloroplastic"	AT3G61470.1	photosystem I light harvesting complex gene 2 	LOC_Os07g38960.1	"chlorophyll A-B binding protein, putative, expressed"	AC233662_10.1	Chlorophyll A-B binding protein AC233662.1 39478-42517 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
PtpAffx.1601.8.S1_s_at	A	A1TS	POPTR_0012s04700	POPTR_0012s04700 (11)	scaffold_12:4050645-4050722(-) (11)	NA	O24076	Guanine nucleotide-binding protein subunit beta-like protein	AT1G18080.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os01g49290.1	"WD repeat-containing protein, putative, expressed"	Medtr4g155480.1	"Guanine nucleotide-binding protein subunit beta-like protein, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160100.1.A1_at	A	A1TS	POPTR_0008s13600	POPTR_0008s13600 (11)	scaffold_8:8959372-8959696(-) (11)	NA	P93711	Caffeoyl-CoA O-methyltransferase	AT1G67980.1	caffeoyl-CoA 3-O-methyltransferase 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
PtpAffx.160106.1.A1_s_at	A	A1TS	POPTR_0014s11180	POPTR_0014s11180 (9)	scaffold_14:8313897-8313929(+) (9)	NA	P51823	ADP-ribosylation factor 2	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os05g41060.1	"ADP-ribosylation factor, putative, expressed"	Medtr1g106180.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.160113.1.A1_s_at	A	A1TS	POPTR_0001s04380	POPTR_0001s04380 (11)	scaffold_1:3480339-3481231(+) (11)	NA	Q8Z1R0	Acetyl-coenzyme A synthetase	AT1G55320.1	acyl-activating enzyme 18 	LOC_Os03g59080.1	"AMP-binding enzyme, putative, expressed"	Medtr4g134030.1	"AMP-dependent synthetase and ligase; Legume lectin, alpha "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.160116.1.A1_at	A	A1TS	POPTR_0012s05810	POPTR_0012s05810 (11)	scaffold_12:5627496-5627640(+) (11)	NA	Q9LS42	Protein CASP	AT3G18480.1	CCAAT-displacement protein alternatively spliced product 	LOC_Os03g50300.1	"CASP, putative, expressed"	Medtr4g158400.1	"CASP, C-terminal "	GO:0006891|intra-Golgi vesicle-mediated transport	NA	GO:0030173|integral to Golgi membrane
PtpAffx.160125.1.A1_at	A	A1TS	POPTR_0002s17830	POPTR_0002s17830 (11)	scaffold_2:13647572-13648172(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160131.1.A1_at	A	A1MS	POPTR_0017s05650	POPTR_0017s05650 (11)	scaffold_17:4426158-4426343(-) (11)	NA	NA	NA	AT3G59520.1	RHOMBOID-like protein 13 	LOC_Os01g67040.2	"OsRhmbd5 - Putative Rhomboid homologue, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.160131.2.A1_a_at	A	A1TS	POPTR_0017s05650	POPTR_0017s05650 (11)	scaffold_17:4426348-4426492(-) (11)	NA	NA	NA	AT3G59520.1	RHOMBOID-like protein 13 	LOC_Os01g67040.2	"OsRhmbd5 - Putative Rhomboid homologue, expressed"	NA	NA	NA	NA	GO:0016021|integral to membrane
PtpAffx.160133.2.A1_a_at	A	A1TS	POPTR_0006s00970	POPTR_0006s00970 (11)	scaffold_6:545561-546055(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160139.1.A1_at	A	A1TS	POPTR_0005s07370	POPTR_0005s07370 (11)	scaffold_5:5038124-5038714(+) (11)	NA	A2YNT8	Serine/threonine-protein kinase SAPK2	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os07g42940.1	"CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g073720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160147.1.A1_at	A	A1TS	POPTR_0011s12150	POPTR_0011s12150 (11)	scaffold_11:14925977-14926384(+) (11)	NA	Q84JR3	"Pentatricopeptide repeat-containing protein At4g21705, mitochondrial"	AT4G21705.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os07g40750.1	"PPR repeat domain containing protein, putative, expressed"	Medtr2g015140.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160149.1.A1_at	A	A1TS	POPTR_0002s04710	POPTR_0002s04710 (11)	scaffold_2:2950594-2950686(-) (11)	NA	NA	NA	AT3G22970.1	Protein of unknown function (DUF506)  	LOC_Os03g58230.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr1g083310.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160160.1.A1_at	A	A1TS	POPTR_0019s14180	POPTR_0019s14180 (11)	scaffold_19:14932464-14933703(+) (11)	NA	Q4R6X9	Leucine-rich repeat-containing protein 48	AT4G03260.2	Outer arm dynein light chain 1 protein 	LOC_Os07g01550.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.160169.1.A1_a_at	A	A1TS	POPTR_0013s03960	POPTR_0013s03960 (11)	scaffold_13:2589030-2589169(-) (11)	NA	P16157	Ankyrin-1	AT3G04710.3	ankyrin repeat family protein 	LOC_Os05g01310.1	"ankyrin repeat family protein, putative, expressed"	Medtr5g046490.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160176.1.S1_at	A	A1TS	POPTR_0002s10670	POPTR_0002s10670 (11)	scaffold_2:7748478-7749661(-) (11)	NA	NA	NA	AT1G09710.2	Homeodomain-like superfamily protein 	LOC_Os02g34630.1	"MYB family transcription factor, putative, expressed"	Medtr3g149540.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160182.1.A1_a_at	A	A2TS	POPTR_0006s01830	POPTR_0006s01830 (11)//POPTR_0016s00940 (11)	scaffold_16:361701-361773(-) (11)//scaffold_6:1110821-1110893(+) (11)	NA	Q9ATB4	Transcriptional adapter ADA2b	AT4G16420.2	homolog of yeast ADA2 2B 	LOC_Os03g53960.2	"transcriptional adaptor, putative, expressed"	Medtr2g030360.1	"Zinc finger, ZZ-type; Calcium-binding EF-hand; SWIRM; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160187.1.A1_at	A	A1MS	POPTR_0009s04900	POPTR_0009s04900 (11)	scaffold_9:5148760-5149104(+) (11)	NA	A8AI59	Flavoprotein wrbA	AT5G58800.2	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g078480.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.160192.1.A1_at	A	A1TA	POPTR_0001s08030	POPTR_0001s08030 (10)	scaffold_1:6082548-6083024(+) (10)	NA	P34205	Deoxyribodipyrimidine photo-lyase	AT1G12370.2	photolyase 1 	LOC_Os10g08580.1	"FAD binding domain of DNA photolyase domain containing protein, expressed"	Medtr5g011940.1	"DNA photolyase, FAD-binding "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
PtpAffx.160195.1.A1_at	A	A1TS	POPTR_0012s04790	POPTR_0012s04790 (10)	scaffold_12:4177823-4178084(+) (10)	NA	P29620	Cyclin-dependent kinase D-1	AT1G18040.1	cyclin-dependent kinase D1;3 	LOC_Os05g32600.1	"cyclin-dependent kinase D-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160195.1.A1_s_at	A	A1TS	POPTR_0012s04790	POPTR_0012s04790 (11)	scaffold_12:4177756-4177982(+) (11)	NA	P29620	Cyclin-dependent kinase D-1	AT1G18040.1	cyclin-dependent kinase D1;3 	LOC_Os05g32600.1	"cyclin-dependent kinase D-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160204.1.A1_at	A	A1TS	POPTR_0018s02570	POPTR_0018s02570 (9)	scaffold_18:2333274-2333968(-) (9)	NA	Q8RXN4	"3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial"	AT4G31810.1	ATP-dependent caseinolytic (Clp) protease/crotonase family protein 	LOC_Os10g40540.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr1g016790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.160214.1.A1_at	A	A1TS	POPTR_0002s13450	POPTR_0002s13450 (11)	scaffold_2:9978456-9978764(-) (11)	NA	Q3UMR5	Coiled-coil domain-containing protein 109A	AT2G23790.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160220.1.A1_at	A	A1TS	POPTR_0002s21410	POPTR_0002s21410 (11)	scaffold_2:17878698-17879162(+) (11)	NA	Q5VR89	Aquaporin SIP1-1	AT5G18290.2	Aquaporin-like superfamily protein 	LOC_Os01g08660.1	"aquaporin protein, putative, expressed"	Medtr4g064600.1	Major intrinsic protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160223.1.A1_a_at	A	A2TS	POPTR_0004s10610	POPTR_0017s14250 (11)//POPTR_0004s10610 (11)	scaffold_17:14379070-14379470(+) (11)//scaffold_4:9142726-9143128(+) (11)	NA	Q6NKX1	"Proline dehydrogenase 2, mitochondrial"	AT5G38710.1	Methylenetetrahydrofolate reductase family protein 	LOC_Os10g40360.1	"proline oxidase, mitochondrial precursor, putative, expressed"	Medtr7g020690.1	Proline dehydrogenase 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006562|proline catabolic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0004657|proline dehydrogenase activity	NA
PtpAffx.160223.1.A1_at	A	A1TS	POPTR_0004s10610	POPTR_0004s10610 (11)	scaffold_4:9142667-9143366(+) (11)	NA	Q6NKX1	"Proline dehydrogenase 2, mitochondrial"	AT5G38710.1	Methylenetetrahydrofolate reductase family protein 	LOC_Os10g40360.1	"proline oxidase, mitochondrial precursor, putative, expressed"	Medtr7g020690.1	Proline dehydrogenase 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006562|proline catabolic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0004657|proline dehydrogenase activity	NA
PtpAffx.160223.2.A1_at	A	A1TS	POPTR_0017s14250	POPTR_0017s14250 (11)	scaffold_17:14379044-14379771(+) (11)	NA	Q6NKX1	"Proline dehydrogenase 2, mitochondrial"	AT5G38710.1	Methylenetetrahydrofolate reductase family protein 	LOC_Os10g40360.1	"proline oxidase, mitochondrial precursor, putative, expressed"	Medtr7g020690.1	Proline dehydrogenase 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0044283|small molecule biosynthetic process||GO:0006562|proline catabolic process||GO:0055114|oxidation reduction||GO:0006537|glutamate biosynthetic process	GO:0004657|proline dehydrogenase activity	NA
PtpAffx.160226.1.A1_at	A	A1TS	POPTR_0009s05090	POPTR_0009s05090 (11)	scaffold_9:5253564-5253729(+) (11)	NA	NA	NA	AT5G58720.1	smr (Small MutS Related) domain-containing protein 	LOC_Os01g12530.1	"smr domain containing protein, expressed"	Medtr2g015110.1	"Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160230.1.A1_at	A	A1TA	POPTR_0004s11080	POPTR_0004s11080 (11)	scaffold_4:9687123-9687674(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160231.1.A1_at	A	A1TS	POPTR_0017s12450	POPTR_0017s12450 (11)	scaffold_17:12619478-12620021(-) (11)	NA	Q39131	Lamin-like protein	AT2G27035.1	early nodulin-like protein 20 	LOC_Os09g38540.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr3g162720.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
PtpAffx.160238.1.A1_at	A	A1TS	POPTR_0007s03300	POPTR_0007s03300 (9)	scaffold_7:1912587-1914761(-) (11)	NA	Q9FUY6	MADS-box protein JOINTLESS	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os02g52340.1	"OsMADS22 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.160239.1.A1_at	A	A1TS	POPTR_0001s32620	POPTR_0001s32620 (11)	scaffold_1:30890881-30891307(-) (11)	NA	O75691	Small subunit processome component 20 homolog	AT4G30990.1	ARM repeat superfamily protein 	LOC_Os01g40250.1	"down-regulated in metastasis family protein, expressed"	Medtr3g105260.1	Down-regulated in metastasis 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160244.1.A1_at	A	A1TS	POPTR_0007s03400	POPTR_0007s03400 (9)	scaffold_7:1957026-1957400(+) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr5g073480.1	"Uncharacterized 24.1 kDa protein in LEF4-P33 intergenic region, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160252.1.S1_at	A	A1TS	POPTR_0006s13550	POPTR_0006s13550 (11)	scaffold_6:10779233-10779719(+) (11)	NA	Q9ZUU0	WRKY transcription factor 44	AT2G37260.1	WRKY family transcription factor family protein 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g120710.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.160252.2.A1_at	A	A1TS	POPTR_0016s08440	POPTR_0016s08440 (11)	scaffold_16:6252358-6252785(-) (11)	NA	Q9C5T3	Probable WRKY transcription factor 26	AT5G07100.1	WRKY DNA-binding protein 26 	LOC_Os01g61080.1	"OsWRKY24 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g120710.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.160256.2.A1_s_at	A	A1TS	POPTR_0016s12350	POPTR_0016s12350 (11)	scaffold_16:11675192-11675616(-) (11)	NA	Q9M028	LIMR family protein At5g01460	AT5G01460.1	LMBR1-like membrane protein 	LOC_Os06g03760.2	"LMBR1 integral membrane protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160259.1.A1_at	A	A1TS	POPTR_0006s10610	POPTR_0006s10610 (11)	scaffold_6:7945979-7946863(-) (11)	NA	Q8RWU5	F-box/LRR-repeat protein 3	AT5G01720.1	RNI-like superfamily protein 	LOC_Os12g01760.1	"F-box/LRR domain containing protein, putative, expressed"	Medtr7g138390.1	Leucine-rich repeat 2 	NA	GO:0005515|protein binding	NA
PtpAffx.160266.1.A1_at	A	A1TS	POPTR_0005s16280	POPTR_0005s16280 (11)	scaffold_5:12999421-12999556(+) (11)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006333|chromatin assembly or disassembly||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0003682|chromatin binding||GO:0008270|zinc ion binding"	GO:0005634|nucleus||GO:0000785|chromatin
PtpAffx.160266.1.A1_s_at	A	A2TS	POPTR_0002s09010	POPTR_0002s09010 (11)//POPTR_0005s16280 (11)	scaffold_2:6381053-6382959(+) (11)//scaffold_5:12997609-12999278(+) (11)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0008270|zinc ion binding"	GO:0005634|nucleus
PtpAffx.160270.1.A1_at	A	A1MS	POPTR_0006s12310	POPTR_0006s12310 (11)	scaffold_6:9478866-9479238(-) (11)	NA	Q15428	Splicing factor 3A subunit 2	AT2G32600.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os03g15700.1	"splicing factor 3A subunit 2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160277.1.A1_at	A	A1TS	POPTR_0004s03650	POPTR_0004s03650 (11)	scaffold_4:2528460-2528736(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160282.1.A1_at	A	A1TS	POPTR_0005s14520	POPTR_0005s14520 (11)	scaffold_5:11564863-11565503(+) (11)	NA	NA	NA	AT5G39790.1	5'-AMP-activated protein kinase-related 	LOC_Os02g04330.2	"5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed"	Medtr5g039250.1	"Glycoside hydrolase, family 13, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16030.1.S1_a_at	A	A1TS	POPTR_0010s15290	POPTR_0010s15290 (11)	scaffold_10:14619103-14620799(-) (11)	NA	NA	NA	AT1G79790.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os11g19460.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr7g089310.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.16030.3.S1_a_at	A	A1TS	POPTR_0010s15290	POPTR_0010s15290 (11)	scaffold_10:14617268-14617385(-) (11)	NA	NA	NA	AT1G79790.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os11g19460.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr7g089310.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.160327.1.A1_at	A	A1TS	POPTR_0018s12840	POPTR_0018s12840 (11)	scaffold_18:13360337-13360978(+) (11)	NA	Q8LGE3	Actin-related protein 6	AT3G33520.1	actin-related protein 6 	LOC_Os01g16414.4	"actin, putative, expressed"	Medtr7g027010.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
PtpAffx.160334.1.A1_at	A	A1TS	POPTR_0013s04790	POPTR_0013s04790 (11)	scaffold_13:3305668-3306225(+) (11)	NA	Q8LB81	GDSL esterase/lipase At5g33370	AT5G33370.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os02g40440.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g022900.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.160346.1.A1_at	A	A1TS	POPTR_0002s16880	POPTR_0002s16880 (11)	scaffold_2:12629064-12630152(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT3G61610.1	Galactose mutarotase-like superfamily protein 	LOC_Os01g46950.1	"aldose 1-epimerase, putative, expressed"	Medtr4g121890.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
PtpAffx.160357.1.A1_at	A	A1TS	POPTR_0004s22540	POPTR_0004s22540 (11)	scaffold_4:21408183-21408705(+) (11)	NA	NA	NA	AT2G28120.1	Major facilitator superfamily protein 	LOC_Os03g58580.1	"nodulin, putative, expressed"	AC233660_5.1	Nodulin-like; Major facilitator superfamily MFS_1 AC233660.2 23536-25326 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160360.1.A1_at	A	A1TS	POPTR_0008s20530	POPTR_0008s20530 (11)	scaffold_8:14275459-14275944(-) (11)	NA	Q8W4J2	Mitogen-activated protein kinase 16	AT5G19010.1	mitogen-activated protein kinase 16 	LOC_Os05g05160.1	"CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g026470.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160367.1.A1_at	A	A1TS	POPTR_0008s04830	POPTR_0008s04830 (11)	scaffold_8:2799768-2800164(-) (11)	NA	Q9C7A2	Ankyrin repeat-containing protein At3g12360	AT3G12360.1	Ankyrin repeat family protein 	LOC_Os03g17240.1	"ankyrin repeat-containing protein, putative, expressed"	Medtr7g120640.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160374.1.A1_at	A	A1TS	POPTR_0006s27440	POPTR_0006s27440 (11)	scaffold_6:25341849-25342099(-) (11)	NA	Q6DJ03	Protein MEMO1	AT2G25280.1	"CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related (InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins in 474 species: Archae - 213; Bacteria - 366; Metazoa - 159; Fungi - 135; Plants - 54; Viruses - 0; Other Eukaryotes - 147 (source: NCBI BLink). "	LOC_Os08g20270.2	"MEMO1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160389.1.A1_at	A	A1TS	POPTR_0001s41440	POPTR_0001s41440 (11)	scaffold_1:41063300-41063510(-) (11)	NA	Q7XSK0	Beta-glucosidase 18	AT4G21760.1	beta-glucosidase 47 	LOC_Os04g43410.1	"Os4bglu18 - monolignol beta-glucoside homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.160389.1.A1_s_at	A	A1TS	POPTR_0001s41440	POPTR_0001s41440 (11)	scaffold_1:41063520-41063818(-) (11)	NA	Q7XSK0	Beta-glucosidase 18	AT4G21760.1	beta-glucosidase 47 	LOC_Os04g43410.1	"Os4bglu18 - monolignol beta-glucoside homologue, expressed"	Medtr8g146380.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.160390.3.A1_s_at	A	A1TS	POPTR_0012s00660	POPTR_0012s00660 (11)	scaffold_12:365840-366785(+) (11)	NA	Q0JH50	Gibberellin 20 oxidase 2	AT5G24530.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g03034.1	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr3g122530.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.160399.1.A1_at	A	A1TS	POPTR_0013s14910	POPTR_0013s14910 (9)	scaffold_13:14993014-14993271(+) (11)	NA	O54922	Exocyst complex component 7	AT5G58430.1	exocyst subunit exo70 family protein B1 	LOC_Os05g39610.1	"exo70 exocyst complex subunit domain containing protein, expressed"	Medtr5g081630.1	Exo70 exocyst complex subunit 	GO:0006887|exocytosis	NA	GO:0000145|exocyst
PtpAffx.1604.1.A1_s_at	A	A1TS	POPTR_0010s20000	POPTR_0010s20000 (10)	scaffold_10:17752036-17752434(+) (10)	NA	Q76P23	Mitochondrial substrate carrier family protein Q	AT2G39970.1	Mitochondrial substrate carrier family protein 	LOC_Os03g15860.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g089250.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160413.1.A1_at	A	A1TS	POPTR_0008s13150	POPTR_0008s13150 (11)	scaffold_8:8594752-8595193(+) (11)	NA	NA	NA	AT1G70750.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16044.1.S1_at	A	A1MS	POPTR_0003s06550	POPTR_0003s06550 (11)	scaffold_3:8039420-8039928(+) (11)	NA	NA	NA	AT1G54120.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14060.1); Has 23 Blast hits to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g025160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160440.1.A1_at	A	A1TS	POPTR_0014s11300	POPTR_0014s11300 (11)	scaffold_14:8404586-8404790(-) (11)	NA	Q93W77	"NifU-like protein 1, chloroplastic"	AT4G01940.1	NFU domain protein 1 	LOC_Os03g20010.1	"nifU, putative, expressed"	Medtr7g133310.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
PtpAffx.160441.1.A1_at	A	A1TS	POPTR_0016s12480	POPTR_0016s12480 (11)	scaffold_16:11938509-11938959(-) (11)	NA	NA	NA	AT5G01370.1	ALC-interacting protein 1 	NA	NA	Medtr4g013080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160443.1.A1_s_at	A	A1TS	POPTR_0011s04300	POPTR_0011s04300 (11)	scaffold_11:4312034-4312509(-) (11)	NA	NA	NA	AT5G57580.1	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160447.1.A1_at	A	A1TS	POPTR_0005s11020	POPTR_0005s11020 (11)	scaffold_5:7949988-7950455(-) (11)	NA	NA	NA	AT1G21740.1	Protein of unknown function (DUF630 and DUF632) 	LOC_Os09g37040.1	"DUF630/DUF632 domains containing protein, putative, expressed"	Medtr4g140290.1	Protein of unknown function DUF630 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160464.1.A1_at	A	A1MS	POPTR_0006s23620	POPTR_0006s23620 (9)	scaffold_6:22336934-22337231(+) (9)	NA	NA	NA	AT2G26310.1	Chalcone-flavanone isomerase family protein 	LOC_Os02g53810.1	expressed protein	Medtr1g019800.1	hypothetical protein 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
PtpAffx.160470.1.A1_s_at	A	A1TS	POPTR_0001s00390	POPTR_0001s00390 (11)	scaffold_1:303381-303482(+) (11)	NA	Q940Y1	Oxysterol-binding protein-related protein 2A	AT4G22540.1	OSBP(oxysterol binding protein)-related protein 2A 	LOC_Os08g05870.1	"oxysterol-binding protein-related protein 6, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
PtpAffx.160479.1.A1_at	A	A1TS	POPTR_0018s07760	POPTR_0018s07760 (11)	scaffold_18:8499955-8500919(-) (11)	NA	NA	NA	AT5G11960.1	Protein of unknown function (DUF803) 	LOC_Os01g51190.1	expressed protein	Medtr1g019910.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160484.1.A1_s_at	A	A1TS	POPTR_0006s26270	POPTR_0006s26270 (11)	scaffold_6:24524081-24525493(-) (11)	NA	P82715	"PsbP domain-containing protein 5, chloroplastic"	AT5G11450.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os01g43070.1	"psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed"	Medtr3g136110.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160485.2.A1_a_at	A	A1TS	POPTR_0003s13770	POPTR_0003s13770 (11)	scaffold_3:14065854-14067074(+) (11)	NA	NA	NA	NA	NA	LOC_Os01g42720.2	expressed protein	Medtr8g119540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160487.1.A1_at	A	A1TS	POPTR_0022s00820	POPTR_0022s00820 (10)	scaffold_22:416548-417930(+) (10)	NA	Q5R7Q3	Magnesium transporter NIPA2	AT1G71900.1	Protein of unknown function (DUF803) 	LOC_Os01g65986.1	"DUF803 domain containing, putative, expressed"	Medtr2g005850.1	Protein of unknown function DUF803 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160490.1.A1_s_at	A	A1TS	POPTR_0017s02960	POPTR_0017s02960 (11)	scaffold_17:2126656-2126977(-) (11)	NA	NA	NA	AT5G16720.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160504.1.A1_s_at	A	A1TS	POPTR_0002s09330	POPTR_0002s09330 (11)	scaffold_2:6625108-6625207(-) (11)	NA	P78820	Acetyl-CoA carboxylase	AT1G36160.2	acetyl-CoA carboxylase 1 	LOC_Os10g21910.1	"acetyl-CoA carboxylase, putative, expressed"	CU651589_13.1	"Haem peroxidase, plant/fungal/bacterial; ABC transporter related; Pyruvate carboxylase; Acetyl-coenzyme A carboxyltransferase, C-terminal; ; CU651589.4 81173-69593 E EGN_Mt090430 200"	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0003989|acetyl-CoA carboxylase activity||GO:0005524|ATP binding	NA
PtpAffx.160510.1.A1_at	A	A1TS	POPTR_0002s23650	POPTR_0002s23650 (11)	scaffold_2:21187761-21187859(+) (11)	NA	Q9SRT2	Transcription factor bHLH62	AT3G07340.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr8g012630.2	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.160515.1.A1_at	A	A1TS	POPTR_0005s11150	POPTR_0005s11150 (11)	scaffold_5:8096275-8096545(-) (11)	NA	NA	NA	AT3G51325.1	RING/U-box superfamily protein 	LOC_Os04g16970.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g022720.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16052.1.S1_a_at	A	A1TS	POPTR_0011s00890	POPTR_0011s00890 (11)	scaffold_11:453197-453410(+) (11)	NA	Q56X52	"Alternative oxidase 4, chloroplastic/chromoplastic"	AT4G22260.1	Alternative oxidase family protein 	LOC_Os04g57320.1	"immutans protein, putative, expressed"	Medtr2g029210.1	"Alternative oxidase, identical "	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
PtpAffx.16052.2.S1_a_at	A	A2TS	POPTR_0004s00420	POPTR_0011s00890 (11)//POPTR_0004s00420 (11)	scaffold_11:452872-453263(+) (11)//scaffold_4:139148-139546(+) (11)	NA	Q56X52	"Alternative oxidase 4, chloroplastic/chromoplastic"	AT4G22260.1	Alternative oxidase family protein 	LOC_Os04g57320.1	"immutans protein, putative, expressed"	Medtr2g029210.1	"Alternative oxidase, identical "	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
PtpAffx.16052.3.S1_at	A	A1MS	POPTR_0011s00890	POPTR_0011s00890 (11)	scaffold_11:452665-452817(+) (11)	NA	Q56X52	"Alternative oxidase 4, chloroplastic/chromoplastic"	AT4G22260.1	Alternative oxidase family protein 	LOC_Os04g57320.1	"immutans protein, putative, expressed"	Medtr2g029210.1	"Alternative oxidase, identical "	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
PtpAffx.160522.1.S1_at	A	A1TS	POPTR_0009s05560	POPTR_0009s05560 (11)	scaffold_9:5632076-5632338(-) (11)	NA	NA	NA	NA	NA	LOC_Os01g16880.1	expressed protein	Medtr4g104360.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160532.1.A1_at	A	A1TS	POPTR_0002s16980	POPTR_0002s16980 (11)	scaffold_2:12750041-12750276(+) (11)	NA	NA	NA	AT1G01430.1	TRICHOME BIREFRINGENCE-LIKE 25 	LOC_Os05g12380.1	expressed protein	Medtr5g036370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160540.1.A1_at	A	A1TS	POPTR_0013s07980	POPTR_0013s07980 (9)	scaffold_13:6896839-6896985(-) (9)	NA	NA	NA	AT3G03130.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17160.1); Has 7130 Blast hits to 3690 proteins in 504 species: Archae - 22; Bacteria - 2666; Metazoa - 1654; Fungi - 721; Plants - 246; Viruses - 56; Other Eukaryotes - 1765 (source: NCBI BLink). 	LOC_Os02g47130.1	expressed protein	Medtr4g106890.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160545.1.A1_at	A	A1TS	POPTR_0014s13490	POPTR_0014s13490 (11)	scaffold_14:9933818-9936363(+) (11)	NA	Q8L910	Probable glutathione peroxidase 4	AT2G48150.1	glutathione peroxidase 4 	LOC_Os03g24380.1	"glutathione peroxidase domain containing protein, expressed"	Medtr4g149540.2	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
PtpAffx.160545.1.A1_s_at	A	A1TS	POPTR_0014s13490	POPTR_0014s13490 (11)	scaffold_14:9933500-9936256(+) (11)	NA	Q8L910	Probable glutathione peroxidase 4	AT2G48150.1	glutathione peroxidase 4 	LOC_Os03g24380.1	"glutathione peroxidase domain containing protein, expressed"	Medtr4g149540.2	Glutathione peroxidase 	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0004602|glutathione peroxidase activity	NA
PtpAffx.160561.1.A1_at	A	A1TS	POPTR_0001s16420	POPTR_0001s16420 (11)	scaffold_1:13225122-13225441(+) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160569.1.A1_at	A	A1TS	POPTR_0013s03720	POPTR_0013s03720 (11)	scaffold_13:2365556-2365762(-) (11)	NA	Q9FGY9	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase	AT5G49570.1	peptide-N-glycanase 1 	LOC_Os07g31460.1	"peptide-Nasparagine amidase, putative, expressed"	Medtr7g140800.1	Transglutaminase-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	GO:0005634|nucleus
PtpAffx.160576.1.A1_at	A	A1TS	POPTR_0008s06250	POPTR_0008s06250 (11)	scaffold_8:3699172-3699407(+) (11)	NA	NA	NA	AT2G39870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1); Has 73 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g63050.1	expressed protein	Medtr5g088680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160579.1.A1_at	A	A1TS	POPTR_0002s05760	POPTR_0002s05760 (10)	scaffold_2:3779234-3779513(+) (10)	NA	Q6PGS5	Transmembrane protein 56-B	AT4G19645.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os05g43540.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
PtpAffx.160584.1.A1_at	A	A1MA	POPTR_0002s25850	POPTR_0002s25850 (11)	scaffold_2:22882446-22882970(+) (11)	NA	NA	NA	AT2G20390.1	unknown protein; Has 50 Blast hits to 50 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g51840.3	expressed protein	Medtr7g116910.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16060.1.S1_at	A	A1TS	POPTR_0006s12970	POPTR_0006s12970 (11)	scaffold_6:10225842-10226206(-) (11)	NA	NA	NA	AT5G03230.1	"Protein of unknown function, DUF584 "	LOC_Os04g43990.1	"DUF584 domain containing protein, putative, expressed"	Medtr7g121560.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16061.1.A1_at	A	A1TS	POPTR_0012s07340	POPTR_0012s07340 (11)	scaffold_12:8233125-8233663(+) (11)	NA	Q9LV10	Probable peptide/nitrate transporter At5g62680	AT5G62680.1	Major facilitator superfamily protein 	LOC_Os03g48180.1	"peptide transporter PTR2, putative, expressed"	Medtr8g113040.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
PtpAffx.16061.2.S1_at	A	A1TS	POPTR_0004s03670	POPTR_0004s03670 (9)	scaffold_4:2548272-2548549(+) (9)	NA	NA	NA	AT1G61255.1	BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g47270.1	"GCRP4 - Glycine and cysteine rich family protein precursor, expressed"	Medtr2g014240.1	"Glycine-rich protein DC9.1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160624.1.A1_s_at	A	A1TS	POPTR_0010s19660	POPTR_0010s19660 (11)	scaffold_10:17518646-17518888(-) (11)	NA	Q9SRM5	GDSL esterase/lipase CPRD49	AT3G11210.1	SGNH hydrolase-type esterase superfamily protein 	LOC_Os11g48070.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g093610.1	"Lipolytic enzyme, G-D-S-L; "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
PtpAffx.160627.1.A1_a_at	A	A1TS	POPTR_0010s10410	POPTR_0010s10410 (9)	scaffold_10:10922870-10923087(-) (9)	NA	NA	NA	AT2G02910.1	Protein of unknown function (DUF616) 	LOC_Os11g09170.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	AC146568_8.1	Protein of unknown function DUF616 AC146568.11 42302-43568 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16063.1.A1_at	A	A1TS	POPTR_0002s15990	POPTR_0002s15990 (11)	scaffold_2:11918481-11920100(-) (11)	NA	NA	NA	AT1G01730.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g44540.3	expressed protein	Medtr7g085210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160648.1.S1_s_at	A	A1TS	POPTR_0006s10360	POPTR_0006s10360 (11)	scaffold_6:7765542-7765816(+) (11)	NA	Q9LFG2	"Diaminopimelate epimerase, chloroplastic"	AT3G53580.1	diaminopimelate epimerase family protein 	LOC_Os12g37960.2	"diaminopimelate epimerase, chloroplast precursor, putative, expressed"	Medtr7g077770.1	Diaminopimelate epimerase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009089|lysine biosynthetic process via diaminopimelate	GO:0008837|diaminopimelate epimerase activity	GO:0005737|cytoplasm
PtpAffx.16065.1.S1_at	A	A1TS	POPTR_0010s06440	POPTR_0010s06440 (11)	scaffold_10:7802903-7803001(-) (11)	NA	Q9LU89	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform	AT3G26020.2	Protein phosphatase 2A regulatory B subunit family protein 	LOC_Os04g40860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g103110.1	"Protein phosphatase 2A, regulatory B subunit, B56 "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0008601|protein phosphatase type 2A regulator activity	GO:0000159|protein phosphatase type 2A complex
PtpAffx.160654.1.S1_at	A	A1TS	POPTR_0004s17980	POPTR_0004s17980 (11)	scaffold_4:18009290-18010306(+) (11)	NA	NA	NA	AT2G17840.1	Senescence/dehydration-associated protein-related 	LOC_Os06g50330.1	"senescence-associated protein, putative, expressed"	Medtr5g022360.1	Senescence-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160681.1.A1_at	A	A1TS	POPTR_0009s04590	POPTR_0009s04590 (11)	scaffold_9:4900378-4900767(-) (11)	NA	Q15477	Helicase SKI2W	AT3G46960.1	"RNA helicase, ATP-dependent, SK12/DOB1 protein "	LOC_Os02g06500.1	"DSHCT domain containing protein, expressed"	Medtr4g161100.1	"ATP-requiring DNA helicase RecQ; DSH, C-terminal; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.16070.1.S1_at	A	A1TS	POPTR_0002s15280	POPTR_0002s15280 (11)	scaffold_2:11420776-11421891(-) (11)	NA	O64644	Histone deacetylase complex subunit SAP18	AT2G45640.1	SIN3 associated polypeptide P18 	LOC_Os02g02960.4	"histone deacetylase complex subunit SAP18, putative, expressed"	AC233100_3.1	Sin3 associated polypeptide p18 AC233100.6 16242-12510 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160702.1.S1_s_at	A	A1TS	POPTR_0002s14140	POPTR_0002s14140 (11)	scaffold_2:10489452-10490576(+) (11)	NA	Q7T037	E3 ubiquitin-protein ligase RNF12-B	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160718.1.S1_at	A	A1TS	POPTR_0008s08600	POPTR_0008s08600 (10)	scaffold_8:5334581-5334790(-) (10)	NA	P49961	Ectonucleoside triphosphate diphosphohydrolase 1	AT2G02970.1	GDA1/CD39 nucleoside phosphatase family protein 	LOC_Os08g33850.1	"nucleoside-triphosphatase, putative, expressed"	Medtr5g044090.1	Nucleoside phosphatase GDA1/CD39 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.160721.1.S1_at	A	A1TS	POPTR_0005s07890	POPTR_0005s07890 (11)	scaffold_5:5412827-5413032(-) (11)	NA	O50401	Trehalose-phosphate phosphatase	AT5G65140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g31630.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr5g072070.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.160721.1.S1_s_at	A	A1TS	POPTR_0005s07890	POPTR_0005s07890 (11)	scaffold_5:5412163-5412721(-) (11)	POPTR_0007s05670 (6)	O50401	Trehalose-phosphate phosphatase	AT5G65140.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g31630.1	"uncharacterized glycosyl hydrolase Rv2006/MT2062, putative, expressed"	Medtr5g072070.1	Trehalose-phosphatase 	GO:0005992|trehalose biosynthetic process	GO:0003824|catalytic activity	NA
PtpAffx.160733.1.S1_s_at	A	A1TS	POPTR_0014s16660	POPTR_0014s16660 (11)	scaffold_14:12757931-12758619(+) (11)	NA	P73627	Uncharacterized protein sll1770	AT3G07700.2	Protein kinase superfamily protein 	LOC_Os09g07660.2	"ELMO/CED-12 family protein, putative, expressed"	Medtr3g106570.1	Protein kinase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160744.1.S1_at	A	A1TS	POPTR_0013s08550	POPTR_0013s08550 (10)	scaffold_13:7808263-7813270(+) (10)	NA	NA	NA	NA	NA	LOC_Os01g01050.2	"R3H domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
PtpAffx.160770.1.S1_s_at	A	A1TS	POPTR_0007s11990	POPTR_0007s11990 (11)	scaffold_7:12334679-12335047(+) (11)	NA	Q8RY67	Wall-associated receptor kinase-like 14	AT2G23450.1	Protein kinase superfamily protein 	LOC_Os03g12470.1	"OsWAK25 - OsWAK receptor-like protein kinase, expressed"	Medtr5g018590.1	Protein kinase; Immunoglobulin/major histocompatibility complex 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.160774.1.S1_s_at	A	A1TS	POPTR_0015s05000	POPTR_0015s05000 (11)	scaffold_15:5234775-5235124(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr6g080810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160787.1.S1_at	A	A1MS	POPTR_0004s04510	POPTR_0004s04510 (11)	scaffold_4:3262761-3263064(+) (11)	NA	P61406	Telomerase-binding protein EST1A	AT1G28260.2	Telomerase activating protein Est1 	LOC_Os08g21350.3	"cig3, putative, expressed"	Medtr2g017490.1	"cig3, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160807.1.S1_at	A	A1TS	POPTR_0002s19170	POPTR_0002s19170 (10)	scaffold_2:15090799-15091766(-) (10)	NA	Q9M1P7	Probable boron transporter 2	AT3G62270.1	HCO3- transporter family 	LOC_Os12g37840.1	"boron transporter protein, putative, expressed"	Medtr7g133490.1	HCO3-transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16081.1.S1_a_at	A	A1TS	POPTR_0018s03390	POPTR_0018s03390 (11)	scaffold_18:2989398-2989853(-) (11)	NA	P84104	Serine/arginine-rich splicing factor 3	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.8	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.160811.1.S1_s_at	A	A1TS	POPTR_0001s44970	POPTR_0001s44970 (11)	scaffold_1:45292271-45292553(-) (11)	NA	Q9LJU7	Purple acid phosphatase 18	AT3G20500.1	purple acid phosphatase 18 	LOC_Os03g37130.1	"ATPAP18/PAP18, putative, expressed"	Medtr3g068290.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.160811.2.S1_at	A	A1TS	POPTR_0011s14130	POPTR_0011s14130 (11)	scaffold_11:16669072-16669472(-) (11)	NA	Q9LJU7	Purple acid phosphatase 18	AT3G20500.1	purple acid phosphatase 18 	LOC_Os03g37130.1	"ATPAP18/PAP18, putative, expressed"	Medtr3g068290.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.16082.1.S1_at	A	A1TS	POPTR_0001s13160	POPTR_0001s13160 (11)	scaffold_1:10238210-10238614(-) (11)	NA	NA	NA	AT5G13260.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16082.2.S1_a_at	A	A1TS	POPTR_0003s16260	POPTR_0003s16260 (9)	scaffold_3:15840128-15841531(-) (9)	NA	NA	NA	AT5G13260.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g70320.1	expressed protein	Medtr7g140050.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160837.1.S1_at	A	A1TS	POPTR_0006s18610	POPTR_0006s18610 (9)	scaffold_6:17178480-17179030(+) (9)	NA	Q55A09	Probable serine/threonine-protein kinase DDB_G0272254	AT5G57610.1	Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain 	LOC_Os02g54510.3	"protein kinase domain containing protein, expressed"	Medtr8g128470.1	Octicosapeptide/Phox/Bem1p; Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16084.1.A1_at	A	A1TS	POPTR_0010s07700	POPTR_0010s07700 (10)	scaffold_10:8694680-8695212(+) (10)	NA	P27061	Acid phosphatase 1	AT1G04040.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr1g065230.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.160840.1.S1_s_at	A	A1TS	POPTR_0001s40420	POPTR_0001s40420 (11)	scaffold_1:39846099-39846585(+) (11)	NA	Q9LRR7	"9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic"	AT3G14440.1	nine-cis-epoxycarotenoid dioxygenase 3 	LOC_Os03g44380.1	"9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed"	Medtr5g025250.1	Carotenoid oxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160855.1.S1_at	A	A2TS	POPTR_0018s02990	POPTR_0018s02990 (11)//POPTR_0018s03010 (11)	scaffold_18:2629182-2630272(+) (11)//scaffold_18:2686015-2687105(+) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os09g30414.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16086.1.A1_at	A	A1TS	POPTR_0009s03110	POPTR_0009s03110 (10)	scaffold_9:3802025-3802395(+) (10)	NA	O23826	125 kDa kinesin-related protein	AT3G45850.2	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g02670.3	"kinesin motor domain containing protein, putative, expressed"	Medtr2g113990.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
PtpAffx.160864.1.S1_s_at	A	A1TS	POPTR_0006s27860	POPTR_0006s27860 (10)	scaffold_6:25711792-25712280(+) (10)	NA	Q8DJ40	Chaperone protein ClpB 1	AT2G25140.1	casein lytic proteinase B4 	LOC_Os02g08490.1	"chaperone protein clpB 1, putative, expressed"	Medtr3g138120.1	"AAA ATPase, central region; Clp, N terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.160866.1.S1_s_at	A	A1TS	POPTR_0011s14260	POPTR_0011s14260 (11)	scaffold_11:16730903-16732286(-) (11)	NA	NA	NA	AT3G20490.1	unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). 	LOC_Os04g53360.1	expressed protein	Medtr5g099880.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160868.1.S1_at	A	A1MS	POPTR_0006s24580	POPTR_0006s24580 (9)	scaffold_6:23180079-23180204(+) (9)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G11850.1	Protein kinase superfamily protein 	LOC_Os02g12810.1	"protein kinase domain containing protein, expressed"	Medtr1g020440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16090.2.S1_a_at	A	A1TS	POPTR_0014s16340	POPTR_0014s16340 (11)	scaffold_14:12450334-12450753(+) (11)	NA	Q9SJ41	Zinc finger CCCH domain-containing protein 18	AT2G05160.1	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os08g03310.4	"zinc finger family protein, putative, expressed"	Medtr5g102170.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.160901.1.S1_s_at	A	A1TS	POPTR_0004s05640	POPTR_0004s05640 (11)	scaffold_4:4402139-4403959(+) (11)	NA	P43297	Cysteine proteinase RD21a	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os05g43230.1	"oryzain alpha chain precursor, putative, expressed"	Medtr1g068320.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
PtpAffx.160916.1.S1_at	A	A1TS	POPTR_0007s05210	POPTR_0007s05210 (11)	scaffold_7:3360004-3360200(+) (11)	NA	O33513	Protein CbbY	AT4G39970.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os08g37940.1	"HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed"	AC235753_15.1	"HAD-superfamily hydrolase subfamily IA, variant 3 AC235753.1 88087-84841 F EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.160922.1.S1_at	A	A1TS	POPTR_0013s05850	POPTR_0013s05850 (11)	scaffold_13:4210366-4211719(-) (11)	NA	O50008	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	AT5G17920.2	Cobalamin-independent synthase family protein 	LOC_Os12g42884.3	"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed"	Medtr3g110990.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 	GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process||GO:0009086|methionine biosynthetic process	GO:0003871|5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity||GO:0008270|zinc ion binding	NA
PtpAffx.160934.1.S1_s_at	A	A1TS	POPTR_0005s10470	POPTR_0005s10470 (11)	scaffold_5:7522135-7523164(+) (11)	NA	NA	NA	AT2G17550.1	unknown protein; Has 264 Blast hits to 258 proteins in 65 species: Archae - 5; Bacteria - 5; Metazoa - 66; Fungi - 16; Plants - 107; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). 	LOC_Os03g03860.3	expressed protein	Medtr5g024230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160969.1.S1_at	A	A1TS	POPTR_0001s45300	POPTR_0001s45300 (10)	scaffold_1:45823231-45824114(+) (10)	NA	NA	NA	AT1G32810.2	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os04g14510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.160974.1.A1_at	A	A1TS	POPTR_0013s14190	POPTR_0013s14190 (11)	scaffold_13:14493949-14494421(-) (11)	NA	P53603	Formimidoyltransferase-cyclodeaminase	AT2G20830.1	transferases;folic acid binding 	LOC_Os03g38540.1	"folic acid binding protein, putative, expressed"	Medtr8g102530.1	Formiminotransferase 	GO:0008152|metabolic process	GO:0005542|folic acid binding||GO:0016740|transferase activity	NA
PtpAffx.160975.1.S1_at	A	A1MS	POPTR_0011s14850	POPTR_0011s14850 (10)	scaffold_11:17103570-17103667(-) (10)	NA	NA	NA	AT2G17410.2	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.160975.1.S1_s_at	A	A1TS	POPTR_0011s14850	POPTR_0011s14850 (11)	scaffold_11:17103655-17106566(-) (11)	NA	NA	NA	AT2G17410.2	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
PtpAffx.160989.1.A1_at	A	A1TS	POPTR_0003s10000	POPTR_0003s10000 (10)	scaffold_3:11147549-11147995(+) (10)	NA	NA	NA	AT4G37740.1	growth-regulating factor 2 	LOC_Os04g51190.2	"growth-regulating factor, putative, expressed"	Medtr5g027250.1	QLQ 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
PtpAffx.161.1.A1_at	A	A1TS	POPTR_0005s07930	POPTR_0005s07930 (11)	scaffold_5:5478081-5478902(+) (11)	NA	O65201	"Acyl-coenzyme A oxidase 2, peroxisomal"	AT5G65110.1	acyl-CoA oxidase 2 	LOC_Os11g39220.1	"acyl-coenzyme A oxidase, putative, expressed"	Medtr4g109110.1	"Carbohydrate kinase, PfkB; Acyl-CoA dehydrogenase C-terminal-like; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.161024.1.S1_at	A	A1TS	POPTR_0009s08290	POPTR_0009s08290 (11)	scaffold_9:7632697-7635629(-) (11)	NA	Q9FME8	Oligopeptide transporter 4	AT5G64410.1	oligopeptide transporter 4 	LOC_Os01g43940.1	"oligopeptide transporter, putative"	Medtr2g010070.1	"Peptidase aspartic, active site; Oligopeptide transporter OPT superfamily "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161051.1.S1_at	A	A1TS	POPTR_0007s06550	POPTR_0007s06550 (11)	scaffold_7:4933439-4935903(+) (11)	NA	Q06801	"4-alpha-glucanotransferase, chloroplastic/amyloplastic"	AT5G64860.1	disproportionating enzyme 	LOC_Os07g43390.1	"4-alpha-glucanotransferase, chloroplast precursor, putative, expressed"	Medtr3g144850.1	"Glycoside hydrolase, family 77 "	GO:0005975|carbohydrate metabolic process	GO:0004134|4-alpha-glucanotransferase activity	NA
PtpAffx.161070.1.S1_s_at	A	A1TS	POPTR_0004s10800	POPTR_0004s10800 (11)	scaffold_4:9356796-9357269(+) (11)	NA	Q96502	Zinc finger protein CONSTANS-LIKE 2	AT3G02380.1	CONSTANS-like 2 	LOC_Os06g16370.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr1g016230.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
PtpAffx.161118.1.S1_s_at	A	A1TS	POPTR_0001s15530	POPTR_0001s15530 (11)	scaffold_1:12369445-12372277(+) (11)	POPTR_0003s07690 (7)	O65202	Peroxisomal acyl-coenzyme A oxidase 1	AT4G16760.1	acyl-CoA oxidase 1 	LOC_Os06g01390.1	"acyl-coenzyme A oxidase 1.2, peroxisomal, putative, expressed"	Medtr8g105410.1	Acyl-CoA dehydrogenase C-terminal-like; 	GO:0006635|fatty acid beta-oxidation||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity||GO:0003997|acyl-CoA oxidase activity	GO:0005777|peroxisome
PtpAffx.161119.1.S1_at	A	A1TS	POPTR_0002s01570	POPTR_0002s01570 (11)	scaffold_2:846358-846530(-) (11)	NA	P17859	Alpha-amylase	AT1G76130.1	alpha-amylase-like 2 	LOC_Os04g33040.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
PtpAffx.161119.1.S1_s_at	A	A1TS	POPTR_0002s01570	POPTR_0002s01570 (11)	scaffold_2:846316-847247(-) (11)	NA	P17859	Alpha-amylase	AT1G76130.1	alpha-amylase-like 2 	LOC_Os04g33040.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
PtpAffx.161121.1.S1_s_at	A	A1TS	POPTR_0009s11720	POPTR_0009s11720 (11)	scaffold_9:9675558-9676152(-) (11)	NA	Q942D4	BURP domain-containing protein 3	AT1G49320.1	unknown seed protein like 1 	LOC_Os01g53240.1	"BURP domain containing protein, expressed"	Medtr3g159620.1	BURP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16117.1.A1_a_at	A	A1TS	POPTR_0017s09640	POPTR_0017s09640 (11)	scaffold_17:8305657-8305975(+) (11)	NA	Q43873	Peroxidase 73	AT5G67400.1	root hair specific 19 	LOC_Os09g32964.1	"peroxidase precursor, putative, expressed"	Medtr5g015990.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
PtpAffx.161181.1.S1_at	A	A1TS	POPTR_0006s19260	POPTR_0006s19260 (10)	scaffold_6:18254444-18254954(-) (10)	NA	Q84KP0	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT2G23910.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g42620.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g029870.1	"Dihydroflavonol-4-reductase, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161194.1.S1_at	A	A1TS	POPTR_0015s14330	POPTR_0015s14330 (11)	scaffold_15:13984111-13984445(+) (11)	NA	NA	NA	AT4G25360.2	TRICHOME BIREFRINGENCE-LIKE 18 	LOC_Os01g68630.1	"leaf senescence related protein, putative, expressed"	Medtr6g067370.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161201.1.S1_at	A	A1TS	POPTR_0004s14530	POPTR_0004s14530 (11)	scaffold_4:15133113-15133613(-) (11)	NA	Q56Z59	Patellin-3	AT1G72160.1	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os01g65380.1	"patellin protein, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161219.1.A1_at	A	A1TA	POPTR_0014s12380	POPTR_0014s12380 (11)	scaffold_14:9137950-9138391(+) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.161219.2.S1_s_at	A	A1TS	POPTR_0014s12380	POPTR_0014s12380 (11)	scaffold_14:9138008-9138315(-) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.161226.1.S1_at	A	A1TS	POPTR_0001s15050	POPTR_0001s15050 (11)	scaffold_1:11891033-11892020(+) (11)	NA	P37216	"Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic"	AT4G33510.1	3-deoxy-d-arabino-heptulosonate 7-phosphate synthase 	LOC_Os03g27230.1	"phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed"	Medtr5g073580.1	"DAHP synthetase, class II "	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0003849|3-deoxy-7-phosphoheptulonate synthase activity	NA
PtpAffx.161228.1.S1_at	A	A1TS	POPTR_0003s13360	POPTR_0003s13360 (11)	scaffold_3:13758732-13759072(-) (11)	POPTR_0001s10060 (7)	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
PtpAffx.161237.1.S1_at	A	A1MS	POPTR_0005s02830	POPTR_0005s02830 (9)	scaffold_5:1821443-1821967(+) (9)	NA	O80795	Probable inactive receptor-like protein kinase At1g65250	AT3G52530.1	Protein kinase superfamily protein 	LOC_Os04g51040.1	"OsWAK50 - OsWAK receptor-like protein kinase, expressed"	Medtr2g009720.1	Protein kinase; Type I EGF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161240.1.S1_s_at	A	A1TS	POPTR_0007s05300	POPTR_0007s05300 (11)	scaffold_7:3412489-3414105(+) (11)	POPTR_0005s07560 (7)	C0LGT1	Probable LRR receptor-like serine/threonine-protein kinase At5g10290	AT5G10290.1	leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os02g18320.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr3g101870.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.161248.1.S1_s_at	A	A1TS	POPTR_0013s06790	POPTR_0013s06790 (11)	scaffold_13:5490413-5491701(-) (11)	NA	NA	NA	AT5G17670.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g03720.1	expressed protein	Medtr3g163900.1	PGAP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161256.1.S1_at	A	A1MS	POPTR_0008s06070	POPTR_0008s06070 (9)	scaffold_8:3587747-3588151(-) (9)	NA	Q54TS4	Protein YIPF1 homolog	AT2G39805.1	Integral membrane Yip1 family protein 	LOC_Os05g38180.4	"Yip1 domain containing protein, expressed"	Medtr5g088310.1	Protein of unknown function DUF649 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161290.2.S1_a_at	A	A1TS	POPTR_0006s23740	POPTR_0006s23740 (10)	scaffold_6:22452875-22453910(+) (10)	NA	NA	NA	AT2G26340.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 38 Blast hits to 38 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os03g07960.1	expressed protein	Medtr3g139290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161291.1.S1_at	A	A1TS	POPTR_0018s06720	POPTR_0018s06720 (11)	scaffold_18:6770930-6771558(-) (11)	NA	Q94AA4	6-phosphofructokinase 3	AT4G26270.1	phosphofructokinase 3 	LOC_Os06g05860.1	"6-phosphofructokinase, putative, expressed"	Medtr3g128190.1	Phosphofructokinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161294.1.S1_at	A	A1TS	POPTR_0012s04580	POPTR_0012s04580 (11)	scaffold_12:3887600-3888060(-) (11)	NA	P26569	Histone H1.2	AT3G18035.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os05g51850.1	"AT hook-containing DNA-binding protein, putative, expressed"	Medtr4g155220.1	"High mobility group proteins HMG-I and HMG-Y; Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
PtpAffx.161298.1.S1_at	A	A1TS	POPTR_0009s03190	POPTR_0009s03190 (11)	scaffold_9:3868443-3868962(-) (11)	NA	Q9SIB2	3-ketoacyl-CoA synthase 12	AT2G28630.1	3-ketoacyl-CoA synthase 12 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079200.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	GO:0016020|membrane
PtpAffx.161309.1.S1_at	A	A1TS	POPTR_0002s13920	POPTR_0002s13920 (9)	scaffold_2:10328547-10328579(+) (9)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g41880.1	"hyaluronan/mRNA binding family domain containing protein, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161309.1.S1_s_at	A	A1TS	POPTR_0002s13920	POPTR_0002s13920 (11)	scaffold_2:10327822-10328463(+) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g41880.1	"hyaluronan/mRNA binding family domain containing protein, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161322.1.S1_at	A	A1TS	POPTR_0013s14330	POPTR_0013s14330 (11)	scaffold_13:14559251-14560062(+) (11)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G28220.1	NAD(P)H dehydrogenase B1 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.161323.1.S1_a_at	A	A1TS	POPTR_0018s03090	POPTR_0018s03090 (11)	scaffold_18:2752272-2754485(+) (11)	NA	Q8RXV3	Probable protein phosphatase 2C 59	AT4G31750.1	HOPW1-1-interacting 2 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr1g016250.2	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161323.2.S1_s_at	A	A1TS	POPTR_0006s28340	POPTR_0006s28340 (11)	scaffold_6:26050233-26052404(+) (11)	NA	Q8RXV3	Probable protein phosphatase 2C 59	AT4G31750.1	HOPW1-1-interacting 2 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161334.1.S1_at	A	A2TS	POPTR_0006s04190	POPTR_0006s04190 (11)//POPTR_0016s04010 (10)	scaffold_16:2250430-2251793(-) (9)//scaffold_6:2846394-2847771(-) (11)	NA	P93002	Regulatory protein NPR1	AT2G41370.1	Ankyrin repeat family protein / BTB/POZ domain-containing protein 	LOC_Os01g72020.1	"BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr7g107020.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
PtpAffx.16134.1.S1_at	A	A1TS	POPTR_0002s10640	POPTR_0002s10640 (10)	scaffold_2:7729720-7730242(-) (10)	NA	Q98G36	Argininosuccinate lyase 1	AT5G10920.1	L-Aspartase-like family protein 	LOC_Os03g19280.1	"argininosuccinate lyase, putative, expressed"	Medtr3g149500.1	Fumarate lyase; Argininosuccinate lyase 	NA	GO:0003824|catalytic activity	NA
PtpAffx.161342.1.S1_at	A	A1TS	POPTR_0015s10290	POPTR_0015s10290 (11)	scaffold_15:11247859-11247963(+) (11)	POPTR_0012s09520 (7)	Q86TW2	Uncharacterized aarF domain-containing protein kinase 1	AT5G50330.1	Protein kinase superfamily protein 	LOC_Os01g67720.1	"ABC1 family domain containing protein, putative, expressed"	Medtr8g109830.1	"Protein kinase; Cytochrome c, monohaem "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161342.1.S1_s_at	A	A1TS	POPTR_0015s10290	POPTR_0015s10290 (11)	scaffold_15:11248741-11249256(+) (11)	POPTR_0012s09520 (6)	Q86TW2	Uncharacterized aarF domain-containing protein kinase 1	AT5G50330.1	Protein kinase superfamily protein 	LOC_Os01g67720.1	"ABC1 family domain containing protein, putative, expressed"	Medtr8g109830.1	"Protein kinase; Cytochrome c, monohaem "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161349.1.S1_s_at	A	A1TS	POPTR_0008s18180	POPTR_0008s18180 (11)	scaffold_8:12181197-12182967(+) (11)	NA	NA	NA	AT3G26090.1	G-protein coupled receptors;GTPase activators 	NA	NA	Medtr3g102890.1	Regulator of G protein signalling 	NA	GO:0004871|signal transducer activity	NA
PtpAffx.161358.1.S1_s_at	A	A1TS	POPTR_0001s37580	POPTR_0001s37580 (11)	scaffold_1:36549719-36550120(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161360.1.S1_at	A	A1MS	POPTR_0010s15770	POPTR_0010s15770 (10)	scaffold_10:14887720-14888704(-) (10)	NA	O04425	Flowering time control protein FCA	AT4G16280.2	RNA binding;abscisic acid binding 	LOC_Os09g03610.2	"flowering time control protein FCA, putative, expressed"	Medtr8g136920.1	RNA-binding region RNP-1 (RNA recognition motif); WW/Rsp5/WWP 	NA	GO:0003676|nucleic acid binding||GO:0005515|protein binding	NA
PtpAffx.161372.1.S1_s_at	A	A1TS	POPTR_0001s29240	POPTR_0001s29240 (11)	scaffold_1:27968489-27968768(-) (11)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G73150.1	global transcription factor group E3 	LOC_Os01g11580.1	"bromodomain containing protein, expressed"	Medtr4g121770.1	Bromodomain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161384.1.S1_at	A	A1TS	POPTR_0006s01160	POPTR_0006s01160 (10)	scaffold_6:642467-643028(-) (10)	NA	Q40284	Anthocyanidin 3-O-glucosyltransferase 1	AT1G07250.1	UDP-glucosyl transferase 71C4 	LOC_Os07g37690.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr5g078490.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161389.1.A1_at	A	A1TS	POPTR_0010s12640	POPTR_0010s12640 (10)	scaffold_10:12623328-12625302(+) (10)	NA	Q8N0Z6	Tetratricopeptide repeat protein 5	NA	NA	LOC_Os01g32184.1	"tetratricopeptide repeat protein 5, putative, expressed"	Medtr1g137770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161390.1.S1_at	A	A1TS	POPTR_0001s15410	POPTR_0001s15410 (11)	scaffold_1:12249015-12249957(+) (11)	NA	Q8L7W2	Nudix hydrolase 8	AT5G47240.1	nudix hydrolase homolog 8 	LOC_Os04g46280.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr8g105240.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.161392.1.S1_s_at	A	A1TS	POPTR_0010s07920	POPTR_0010s07920 (11)	scaffold_10:8886950-8887622(+) (11)	POPTR_0008s16970 (6)	O22795	"50S ribosomal protein L28, chloroplastic"	AT2G33450.1	Ribosomal L28 family 	LOC_Os05g01110.1	"ribosomal protein L28 protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.161399.1.S1_at	A	A1TS	POPTR_0012s05410	POPTR_0012s05410 (9)	scaffold_12:5053364-5053707(-) (11)	NA	Q9C9C4	"Enolase 1, chloroplastic"	AT1G74030.1	enolase 1 	LOC_Os09g20820.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
PtpAffx.161404.1.S1_s_at	A	A1TS	POPTR_0006s24260	POPTR_0006s24260 (11)	scaffold_6:22906144-22906546(-) (11)	NA	Q84MC2	Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8	AT5G11950.2	Putative lysine decarboxylase family protein 	LOC_Os01g51210.1	"uncharacterized protein PA4923, putative, expressed"	Medtr1g019920.1	Conserved hypothetical protein 730 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161405.1.S1_s_at	A	A1TS	POPTR_0005s05290	POPTR_0005s05290 (11)	scaffold_5:3499690-3502335(-) (11)	NA	Q5M7J9	Tetratricopeptide repeat protein 35	AT3G04830.1	Protein prenylyltransferase superfamily protein 	LOC_Os02g03470.1	"tetratricopeptide repeat containing protein, putative, expressed"	Medtr7g140640.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161408.1.S1_s_at	A	A1TS	POPTR_0010s18980	POPTR_0010s18980 (11)	scaffold_10:17046903-17047409(+) (11)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT5G49690.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr3g024570.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161412.1.S1_at	A	A1TS	POPTR_0004s05380	POPTR_0004s05380 (10)	scaffold_4:4127559-4127976(-) (10)	NA	Q9C8J6	"Phospholipase A1-Igamma3, chloroplastic"	AT4G18550.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g49830.1	"lipase class 3 family protein, putative, expressed"	Medtr2g019120.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
PtpAffx.161413.1.S1_at	A	A1TS	POPTR_0003s08210	POPTR_0003s08210 (11)	scaffold_3:9627435-9627747(-) (11)	NA	NA	NA	AT2G44730.1	Alcohol dehydrogenase transcription factor Myb/SANT-like family protein 	LOC_Os10g41460.1	"transcription factor like protein, putative, expressed"	Medtr7g092760.1	MADF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161419.1.S1_at	A	A1TS	POPTR_0012s11640	POPTR_0012s11640 (10)	scaffold_12:11985881-11987408(-) (10)	NA	B9NAN0	"Arginine biosynthesis bifunctional protein ArgJ, chloroplastic"	AT2G37500.1	arginine biosynthesis protein ArgJ family 	LOC_Os03g17120.1	"arginine biosynthesis bifunctional protein argJ 1, putative, expressed"	AC233662_37.1	Arginine biosynthesis protein ArgJ AC233662.1 191889-184516 E EGN_Mt090430 200	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006526|arginine biosynthetic process	GO:0004358|glutamate N-acetyltransferase activity	NA
PtpAffx.161420.1.S1_at	A	A1TS	POPTR_0004s07230	POPTR_0004s07230 (9)	scaffold_4:5965516-5966246(+) (9)	NA	Q01332	Beta-carotene hydroxylase	AT4G25700.1	beta-hydroxylase 1 	LOC_Os03g03370.1	"fatty acid hydroxylase, putative, expressed"	Medtr1g126460.2	Carotene hydroxylase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
PtpAffx.161428.1.S1_at	A	A1TS	POPTR_0003s21010	POPTR_0003s21010 (11)	scaffold_3:19333270-19334031(-) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os03g59250.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161428.2.S1_a_at	A	A2TS	POPTR_0001s04120	POPTR_0003s21010 (11)//POPTR_0001s04120 (11)	scaffold_1:3255192-3256478(-) (11)//scaffold_3:19333463-19334862(-) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os03g59250.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161428.2.S1_at	A	A1TS	POPTR_0001s04120	POPTR_0001s04120 (11)	scaffold_1:3255475-3256366(-) (11)	NA	NA	NA	AT1G55340.1	Protein of unknown function (DUF1639) 	LOC_Os03g59250.1	expressed protein	Medtr8g084140.1	Protein of unknown function DUF1639 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16145.1.S1_at	A	A1TS	POPTR_0008s13480	POPTR_0008s13480 (11)	scaffold_8:8866918-8868196(-) (11)	NA	NA	NA	AT2G01755.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 120 Blast hits to 120 proteins in 52 species: Archae - 0; Bacteria - 80; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). 	LOC_Os03g50530.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16148.1.S1_at	A	A1TS	POPTR_0001s27550	POPTR_0001s27550 (10)	scaffold_1:26444912-26445318(-) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37980.1	elicitor-activated gene 3-1 	LOC_Os09g23540.1	"dehydrogenase, putative, expressed"	Medtr5g032770.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.161491.2.S1_s_at	A	A2TS	POPTR_0007s02500	POPTR_0017s06460 (11)//POPTR_0007s02500 (11)	scaffold_17:4951570-4951763(-) (11)//scaffold_7:1479140-1479333(-) (11)	NA	P15479	Isocitrate lyase	AT3G21720.1	isocitrate lyase 	LOC_Os07g34520.1	"isocitrate lyase, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.1615.1.S1_x_at	A	A1TS	POPTR_0004s22810	POPTR_0004s22810 (11)	scaffold_4:21677239-21677807(+) (11)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.1615.2.S1_x_at	A	A1TS	POPTR_0004s22810	POPTR_0004s22810 (11)	scaffold_4:21677249-21677796(+) (11)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
PtpAffx.1615.3.S1_s_at	A	A1TS	POPTR_0005s22780	POPTR_0005s22780 (11)	scaffold_5:21685680-21686046(+) (11)	NA	Q9LR64	"Thylakoid lumenal protein At1g03610, chloroplastic"	AT1G03600.1	photosystem II family protein 	LOC_Os03g21560.1	"photosystem II 11 kD protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161500.1.S1_at	A	A1TS	POPTR_0019s09520	POPTR_0019s09520 (11)	scaffold_19:11095085-11096370(+) (11)	NA	Q9C809	"Probable beta-1,3-galactosyltransferase 8"	AT1G33430.1	Galactosyltransferase family protein 	LOC_Os05g35266.1	"galactosyltransferase, putative, expressed"	Medtr2g104140.1	"Glycosyl transferase, family 31 "	GO:0006486|protein amino acid glycosylation	GO:0008378|galactosyltransferase activity	GO:0016020|membrane
PtpAffx.16153.1.S1_at	A	A1TS	POPTR_0014s13650	POPTR_0014s13650 (11)	scaffold_14:10011925-10012275(-) (11)	NA	Q6MC06	Tyrosyl-tRNA synthetase	AT3G02660.1	"Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial "	LOC_Os01g31610.1	"tyrosyl-tRNA synthetase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding||GO:0003723|RNA binding	GO:0005737|cytoplasm
PtpAffx.161540.1.S1_s_at	A	A1TS	POPTR_0005s20150	POPTR_0005s20150 (11)	scaffold_5:19209588-19209726(+) (11)	NA	Q70DU8	Aldehyde dehydrogenase family 3 member H1	AT1G44170.2	aldehyde dehydrogenase 3H1 	LOC_Os11g08300.1	"aldehyde dehydrogenase, putative, expressed"	Medtr3g100730.1	Aldehyde dehydrogenase NAD(P)-dependent 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.161544.2.S1_a_at	A	A1TS	POPTR_0019s06020	POPTR_0019s06020 (11)	scaffold_19:6477560-6478505(-) (11)	NA	Q31ME3	RNA polymerase sigma factor rpoD2	AT1G64860.1	sigma factor A 	LOC_Os08g06630.1	"RNA polymerase sigma factor, putative, expressed"	Medtr3g163870.1	"Winged helix repressor DNA-binding; RNA polymerase sigma factor RpoS, proteobacteria; ; "	"GO:0006461|protein complex assembly||GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent""||GO:0006352|transcription initiation"	GO:0016987|sigma factor activity||GO:0003700|transcription factor activity	NA
PtpAffx.161548.1.S1_s_at	A	A1TS	POPTR_0001s33920	POPTR_0001s33920 (11)	scaffold_1:32085493-32086142(+) (11)	NA	P92942	Chloride channel protein CLC-b	AT3G27170.1	chloride channel B 	LOC_Os12g25200.1	"chloride transporter, chloride channel family, putative, expressed"	Medtr6g025600.1	"CBS; Cl- channel, voltage gated "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
PtpAffx.16155.1.S1_a_at	A	A1TS	POPTR_0001s13500	POPTR_0001s13500 (11)	scaffold_1:10575760-10575888(-) (11)	NA	Q9LSD5	Transcription factor TCP20	AT3G27010.1	"TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 "	LOC_Os01g69980.1	"TCP family transcription factor, putative, expressed"	Medtr7g018180.1	TCP transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16157.1.S1_s_at	A	A1TS	POPTR_0006s10240	POPTR_0006s10240 (11)	scaffold_6:7646264-7646298(+) (11)	POPTR_0016s12470 (7)	Q9SDW0	Trihelix transcription factor GT-3a	AT5G01380.1	Homeodomain-like superfamily protein 	LOC_Os04g51320.1	"transcription factor TF2, putative, expressed"	Medtr5g026680.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161577.1.S1_at	A	A1TS	POPTR_0002s07330	POPTR_0002s07330 (9)	scaffold_2:5003373-5003670(+) (9)	NA	O49292	"PsbP domain-containing protein 4, chloroplastic"	AT1G77090.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os12g08830.1	"thylakoid lumenal 29.8 kDa protein, putative, expressed"	Medtr3g125340.1	"thylakoid lumenal 29.8 kDa protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161604.1.S1_s_at	A	A1TS	POPTR_0001s03040	POPTR_0001s03040 (11)	scaffold_1:2394784-2397656(-) (11)	NA	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
PtpAffx.161607.1.S1_at	A	A1TS	POPTR_0001s40390	POPTR_0001s40390 (11)	scaffold_1:39797942-39798930(+) (11)	NA	Q9LKA5	"Uncharacterized protein At3g15000, mitochondrial"	AT3G15000.1	cobalt ion binding 	LOC_Os09g33480.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161620.1.S1_at	A	A1TS	POPTR_0004s03720	POPTR_0004s03720 (9)	scaffold_4:2595910-2597166(-) (9)	NA	Q6R2K3	Protein STRUBBELIG-RECEPTOR FAMILY 3	AT4G03390.1	STRUBBELIG-receptor family 3 	LOC_Os07g37810.1	"STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed"	Medtr2g014380.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.161631.1.S1_s_at	A	A1TS	POPTR_0004s24430	POPTR_0004s24430 (11)	scaffold_4:23099018-23099218(-) (11)	NA	Q9FHK0	F-box protein SKIP31	AT5G45360.1	F-box family protein 	LOC_Os06g49530.1	"OsFBX206 - F-box domain containing protein, expressed"	Medtr5g025590.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161637.2.S1_s_at	A	A2TS	POPTR_0007s02150	POPTR_0007s02150 (11)//POPTR_0017s06130 (11)	scaffold_17:4760363-4761177(+) (11)//scaffold_7:1276137-1276993(+) (11)	NA	NA	NA	AT1G05870.4	Protein of unknown function (DUF1685) 	LOC_Os11g17930.1	expressed protein	Medtr1g146930.1	Protein of unknown function DUF1685 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161640.1.S1_at	A	A1TS	POPTR_0006s27640	POPTR_0006s27640 (11)	scaffold_6:25488149-25488949(+) (11)	NA	Q0V7T5	Probable receptor-like protein kinase At1g80640	AT4G32000.2	Protein kinase superfamily protein 	LOC_Os05g25540.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g012230.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.161644.1.S1_s_at	A	A1TS	POPTR_0001s11360	POPTR_0001s11360 (11)	scaffold_1:8809221-8809283(-) (11)	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.161656.1.S1_s_at	A	A1TS	POPTR_0005s25310	POPTR_0005s25310 (11)	scaffold_5:23613457-23613892(+) (11)	POPTR_0002s03300 (7)	NA	NA	AT1G75400.1	RING/U-box superfamily protein 	LOC_Os01g15630.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g040350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161658.1.S1_at	A	A1TS	POPTR_0002s03100	POPTR_0002s03100 (11)	scaffold_2:1927728-1928326(-) (11)	NA	B8E0B2	GTPase obg	AT5G18570.1	GTP1/OBG family protein 	LOC_Os03g58540.1	"spo0B-associated GTP-binding protein, putative, expressed"	Medtr1g028590.1	GTP1/OBG domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
PtpAffx.161659.1.S1_s_at	A	A1TS	POPTR_0001s40690	POPTR_0001s40690 (11)	scaffold_1:40280426-40281930(+) (11)	NA	Q16401	26S proteasome non-ATPase regulatory subunit 5	AT3G15180.1	ARM repeat superfamily protein 	LOC_Os05g48340.1	"proteasome-related, putative, expressed"	Medtr8g071250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161660.1.S1_s_at	A	A1TS	POPTR_0001s25230	POPTR_0001s25230 (11)	scaffold_1:24410910-24412633(+) (11)	NA	NA	NA	AT5G59210.2	myosin heavy chain-related 	LOC_Os03g16120.1	"myosin heavy chain-related, putative, expressed"	Medtr2g117320.1	"t-snare, identical "	NA	NA	GO:0016020|membrane
PtpAffx.161661.1.S1_at	A	A1TS	POPTR_0005s11260	POPTR_0005s11260 (11)	scaffold_5:8154878-8155337(-) (11)	NA	Q7Z569	BRCA1-associated protein	AT2G26000.2	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g09060.1	"BRCA1-associated protein, putative, expressed"	Medtr2g127260.1	"Zinc finger, UBP-type; Zinc finger, RING-type; BRCA1-associated 2 "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.161661.1.S1_s_at	A	A1TS	POPTR_0007s08600	POPTR_0007s08600 (11)	scaffold_7:7456850-7460377(+) (11)	NA	Q7Z569	BRCA1-associated protein	AT2G26000.2	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os02g09060.1	"BRCA1-associated protein, putative, expressed"	Medtr2g127260.1	"Zinc finger, UBP-type; Zinc finger, RING-type; BRCA1-associated 2 "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.161722.1.S1_at	A	A1TS	POPTR_0007s15360	POPTR_0007s15360 (11)	scaffold_7:14924060-14924584(+) (11)	NA	O49543	"Cysteine desulfurase 1, mitochondrial"	AT5G65720.1	nitrogen fixation S (NIFS)-like 1 	LOC_Os09g16910.3	"cysteine desulfurase 1, mitochondrial precursor, putative, expressed"	Medtr5g014960.1	"Aminotransferase, class V; "	GO:0008152|metabolic process	NA	NA
PtpAffx.161726.1.S1_at	A	A1TS	POPTR_0009s05950	POPTR_0009s05950 (9)	scaffold_9:5905564-5906181(-) (9)	NA	Q9SPL4	Vicilin-like antimicrobial peptides 2-2	AT2G28490.1	RmlC-like cupins superfamily protein 	LOC_Os03g21790.1	"cupin domain containing protein, expressed"	Medtr2g111050.1	"Cupin, RmlC-type "	NA	GO:0045735|nutrient reservoir activity	NA
PtpAffx.161729.1.S1_s_at	A	A1TS	POPTR_0005s23670	POPTR_0005s23670 (11)	scaffold_5:22395544-22395861(-) (11)	NA	Q55DF5	JmjC domain-containing protein D	AT5G19840.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g56640.3	"transcription factor jumonji, putative, expressed"	Medtr1g083710.1	"Transcription factor jumonji, jmjC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161733.1.S1_at	A	A1TS	POPTR_0016s08080	POPTR_0016s08080 (10)	scaffold_16:5913798-5915004(+) (10)	NA	P51566	Serine/threonine-protein kinase AFC1	AT3G53570.4	FUS3-complementing gene 1 	LOC_Os01g62080.2	"serine/threonine-protein kinase AFC1, putative, expressed"	Medtr3g115270.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16175.1.S1_at	A	A1TA	POPTR_0013s13180	POPTR_0013s13180 (9)	scaffold_13:13734649-13735049(-) (9)	NA	Q5H8A6	Ion channel CASTOR	AT5G49960.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os03g62650.1	"ion channel DMI1-like, chloroplast precursor, putative, expressed"	Medtr2g005620.1	"Putative ion channel DMI-1, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161765.1.S1_at	A	A1TS	POPTR_0019s14200	POPTR_0019s14200 (10)	scaffold_19:14943688-14944120(-) (10)	NA	NA	NA	AT4G03260.2	Outer arm dynein light chain 1 protein 	LOC_Os07g01550.1	"leucine rich repeat domain containing protein, putative, expressed"	Medtr5g072900.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
PtpAffx.161782.1.S1_at	A	A1TS	POPTR_0001s38220	POPTR_0001s38220 (11)	scaffold_1:37302470-37305260(-) (11)	NA	Q0VC50	"Reticulon-4-interacting protein 1, mitochondrial"	AT3G15090.1	GroES-like zinc-binding alcohol dehydrogenase family protein 	LOC_Os01g54940.1	"dehydrogenase, putative, expressed"	Medtr4g042660.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.16179.1.S1_at	A	A1MS	POPTR_0016s05500	POPTR_0016s05500 (9)	scaffold_16:3431641-3431894(+) (9)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161798.1.S1_at	A	A1TS	POPTR_0005s08650	POPTR_0005s08650 (11)	scaffold_5:6018909-6019174(-) (11)	NA	Q9SJ05	"Shikimate kinase, chloroplastic"	AT2G21940.4	shikimate kinase 1 	LOC_Os04g54800.1	"shikimate kinase, putative, expressed"	NA	NA	NA	GO:0004765|shikimate kinase activity||GO:0005524|ATP binding	NA
PtpAffx.161801.1.S1_at	A	A1TS	POPTR_0005s24020	POPTR_0005s24020 (11)	scaffold_5:22688416-22690472(+) (11)	NA	Q9UTC5	Putative uridine kinase C227.14	AT1G03030.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g40880.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr4g103640.1	"phosphoribulokinase/uridine kinase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161809.1.S1_at	A	A1TS	POPTR_0005s11870	POPTR_0005s11870 (9)	scaffold_5:8637585-8639157(-) (9)	POPTR_0007s13910 (6)	Q9FWX2	NAC domain-containing protein 7	AT2G18060.1	vascular related NAC-domain protein 1 	LOC_Os03g03540.1	"no apical meristem protein, putative, expressed"	Medtr5g021640.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
PtpAffx.161822.1.A1_s_at	A	A2TS	POPTR_0017s06220	POPTR_0017s06220 (11)//POPTR_0017s09560 (11)	scaffold_17:4803649-4804402(+) (11)//scaffold_17:8169558-8170282(-) (11)	NA	Q84P23	4-coumarate--CoA ligase-like 9	AT5G63380.1	AMP-dependent synthetase and ligase family protein 	LOC_Os01g67540.1	"AMP-binding domain containing protein, expressed"	Medtr1g087380.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
PtpAffx.161836.1.A1_at	A	A1MS	POPTR_0014s12750	POPTR_0014s12750 (11)	scaffold_14:9401046-9401225(-) (11)	NA	Q54CS8	Peroxisomal biogenesis factor 6	AT1G03000.1	peroxin 6 	LOC_Os04g52690.3	"AAA family ATPase, putative, expressed"	Medtr7g106320.1	"AAA ATPase, central region; L-lactate dehydrogenase "	NA	GO:0005524|ATP binding	NA
PtpAffx.161836.2.A1_at	A	A1TS	POPTR_0014s12750	POPTR_0014s12750 (9)	scaffold_14:9400755-9400847(-) (9)	NA	Q54CS8	Peroxisomal biogenesis factor 6	AT1G03000.1	peroxin 6 	LOC_Os04g52690.3	"AAA family ATPase, putative, expressed"	Medtr7g106320.1	"AAA ATPase, central region; L-lactate dehydrogenase "	NA	GO:0005524|ATP binding	NA
PtpAffx.16185.1.S1_a_at	A	A1TS	POPTR_0010s13000	POPTR_0010s13000 (11)	scaffold_10:12913336-12913651(-) (11)	NA	Q9C9N5	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830	AT2G01210.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g33090.1	expressed protein	Medtr4g011740.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.161852.1.A1_at	A	A2TS	POPTR_0006s11680	POPTR_0946s00200 (11)//POPTR_0006s11680 (11)	scaffold_6:8895145-8895572(-) (11)//scaffold_946:7014-7441(-) (11)	NA	Q8GYY1	Heat stress transcription factor A-3	AT5G03720.1	heat shock transcription factor A3 	LOC_Os02g32590.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr5g029590.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.161856.1.A1_s_at	A	A1TS	POPTR_0005s23170	POPTR_0005s23170 (11)	scaffold_5:21987312-21987912(-) (11)	NA	Q2MY58	Patatin group A-3	AT3G63200.1	PATATIN-like protein 9 	LOC_Os03g57080.1	"PLA IIIA/PLP7, putative, expressed"	Medtr1g086350.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
PtpAffx.161857.1.A1_at	A	A1TS	POPTR_0011s15690	POPTR_0011s15690 (9)	scaffold_11:17787442-17787850(+) (9)	NA	Q14008	Cytoskeleton-associated protein 5	AT2G35630.1	ARM repeat superfamily protein 	LOC_Os01g60040.2	"HEAT repeat family protein, putative, expressed"	Medtr8g026460.1	VHS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161884.1.A1_at	A	A1TS	POPTR_0017s14210	POPTR_0017s14210 (11)	scaffold_17:14351102-14351557(-) (11)//scaffold_824:6847-7302(+) (11)	NA	NA	NA	AT1G67170.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G14750.1); Has 5478 Blast hits to 4354 proteins in 533 species: Archae - 87; Bacteria - 653; Metazoa - 2554; Fungi - 380; Plants - 418; Viruses - 16; Other Eukaryotes - 1370 (source: NCBI BLink). 	LOC_Os02g09890.1	"protein kinase PKN/PRK1, effector, putative, expressed"	Medtr2g121450.1	"Protein kinase PKN/PRK1, effector, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161922.1.A1_s_at	A	A2TS	POPTR_0008s15890	POPTR_0008s15890 (11)//POPTR_0010s09130 (11)	scaffold_10:9974073-9974132(+) (11)//scaffold_8:10603803-10603862(-) (11)	NA	Q9LIK7	"Putative calcium-transporting ATPase 13, plasma membrane-type"	AT3G22910.1	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein 	LOC_Os10g28240.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr2g043050.1	"ATPase, E1-E2 type "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
PtpAffx.161941.1.A1_at	A	A1MS	POPTR_0013s04730	POPTR_0013s04730 (11)	scaffold_13:3257710-3259296(-) (11)	NA	Q9DAA6	3'-5' exoribonuclease CSL4 homolog	AT5G38890.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os02g57070.1	"3-5 exoribonuclease CSL4, putative, expressed"	Medtr1g093330.1	"3'-5' exoribonuclease CSL4 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161969.1.A1_at	A	A1TS	POPTR_0009s05150	POPTR_0009s05150 (11)	scaffold_9:5312985-5313486(+) (11)	NA	Q9LUZ4	Zinc finger CCCH domain-containing protein 66	AT5G58620.1	zinc finger (CCCH-type) family protein 	LOC_Os05g03760.1	"zinc finger family protein, putative, expressed"	Medtr5g079420.1	"Zinc finger, CCCH-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.161974.1.A1_at	A	A1TA	POPTR_0009s05510	POPTR_0009s05510 (9)	scaffold_9:5603233-5603554(+) (9)	NA	Q94CJ8	Zinc finger CCCH domain-containing protein 55	AT5G12440.3	CCCH-type zinc fingerfamily protein with RNA-binding domain 	LOC_Os03g21140.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr5g008940.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.161977.1.A1_at	A	A1TS	POPTR_0010s12010	POPTR_0010s12010 (10)	scaffold_10:12116259-12116682(-) (10)	NA	NA	NA	AT1G70750.1	"Protein of unknown function, DUF593 "	LOC_Os03g15410.1	expressed protein	Medtr5g086040.1	Protein of unknown function DUF593 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.161984.1.A1_at	A	A1MS	POPTR_0010s09830	POPTR_0010s09830 (11)	scaffold_10:10453415-10453569(-) (11)	NA	Q9CAV6	Serine/threonine-protein kinase WNK1	AT3G04910.1	with no lysine (K) kinase 1 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr1g096390.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16199.1.S1_s_at	A	A1TS	POPTR_0005s05100	POPTR_0005s05100 (11)	scaffold_5:3396412-3396763(-) (11)	NA	P43298	Probable receptor protein kinase TMK1	AT3G23750.1	Leucine-rich repeat protein kinase family protein 	LOC_Os03g50810.1	"receptor protein kinase TMK1 precursor, putative, expressed"	Medtr3g104610.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.161992.1.A1_at	A	A1TS	POPTR_0001s38310	POPTR_0001s38310 (11)	scaffold_1:37398830-37399414(+) (11)	NA	Q9ZRA2	"Homogentisate 1,2-dioxygenase"	AT5G54080.2	"homogentisate 1,2-dioxygenase "	LOC_Os06g01360.1	"homogentisate 1,2-dioxygenase, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006570|tyrosine metabolic process||GO:0006559|L-phenylalanine catabolic process	"GO:0004411|""homogentisate 1,2-dioxygenase activity"""	NA
PtpAffx.161998.1.A1_at	A	A1MS	POPTR_0015s07930	POPTR_0015s07930 (11)	scaffold_15:9204109-9204610(+) (11)	NA	Q9LV17	Transcription factor bHLH79	AT5G62610.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g09590.1	"bHLH transcription factor, putative"	Medtr8g074580.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.162.1.A1_a_at	A	A1TS	POPTR_0019s13480	POPTR_0019s13480 (10)	scaffold_19:14390449-14395993(+) (11)	NA	NA	NA	AT1G11120.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os07g37820.1	expressed protein	Medtr4g125590.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162002.1.A1_s_at	A	A1TS	POPTR_0001s16790	POPTR_0001s16790 (10)	scaffold_1:13589112-13589210(+) (10)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.162004.1.A1_at	A	A1TS	POPTR_0002s24490	POPTR_0002s24490 (11)	scaffold_2:21842713-21843451(-) (11)	NA	Q96L91	E1A-binding protein p400	AT3G24880.1	"Helicase/SANT-associated, DNA binding protein "	LOC_Os08g08000.1	"DNA binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162030.1.A1_s_at	A	A1TS	POPTR_0005s07740	POPTR_0005s07740 (9)	scaffold_5:5302515-5302548(+) (9)	NA	Q9XEE2	Annexin D2	AT5G65020.1	annexin 2 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
PtpAffx.16204.1.A1_at	A	A1TS	POPTR_0017s07000	POPTR_0017s07000 (10)	scaffold_17:5449271-5451496(-) (10)	NA	P58223	KH domain-containing protein At4g18375	AT5G64390.1	RNA-binding KH domain-containing protein 	LOC_Os09g32300.1	"KH domain-containing protein, putative, expressed"	Medtr2g009690.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
PtpAffx.162040.1.S1_at	A	A1TS	POPTR_0006s00340	POPTR_0006s00340 (11)	scaffold_6:129179-129671(+) (11)	NA	Q8RB67	Chaperone protein dnaJ	AT3G13310.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr8g089870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
PtpAffx.162043.1.S1_at	A	A1TS	POPTR_0014s06290	POPTR_0014s06290 (11)	scaffold_14:4790220-4790876(-) (11)	NA	Q9BTW9	Tubulin-specific chaperone D	AT3G60740.1	ARM repeat superfamily protein 	LOC_Os10g36490.1	"HEAT repeat family protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162047.1.S1_s_at	A	A1TS	POPTR_0009s01740	POPTR_0009s01740 (10)	scaffold_9:2259517-2260009(-) (10)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162051.1.S1_a_at	A	A1MS	POPTR_0015s10890	POPTR_0015s10890 (9)	scaffold_15:11655682-11655763(-) (9)	NA	NA	NA	AT4G24910.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g103910.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162072.1.S1_s_at	A	A1TS	POPTR_0004s12380	POPTR_0004s12380 (11)	scaffold_4:11483989-11484303(-) (11)	NA	Q9FLZ8	EID1-like F-box protein 2	AT5G39360.1	EID1-like 2 	LOC_Os07g40710.2	"circadian clock coupling factor-related, putative, expressed"	Medtr6g013970.1	"EDL1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162113.1.S1_s_at	A	A1TS	POPTR_0010s20050	POPTR_0010s20050 (11)	scaffold_10:17806060-17806763(-) (11)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr5g089140.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.162152.1.S1_at	A	A1TS	POPTR_0018s00410	POPTR_0018s00410 (11)	scaffold_18:313343-314236(-) (11)	NA	NA	NA	AT3G22810.1	Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region 	LOC_Os01g13070.1	expressed protein	AC225517_20.1	Pleckstrin homology-type AC225517.6 91599-94192 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162165.1.S1_at	A	A1TS	POPTR_0008s11450	POPTR_0008s11450 (9)	scaffold_8:7271580-7271902(-) (9)	NA	Q6NMF0	CLAVATA3/ESR (CLE)-related protein 13	AT1G73965.1	CLAVATA3/ESR-RELATED 13 	NA	NA	Medtr1g118110.1	"CLE12 ; receptor binding {Arabidopsi, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16221.1.A1_a_at	A	A1TS	POPTR_0011s04380	POPTR_0011s04380 (11)	scaffold_11:4369189-4369401(-) (11)	NA	NA	NA	AT1G61260.1	Protein of unknown function (DUF761) 	LOC_Os07g37620.1	"fiber expressed protein, putative, expressed"	Medtr2g095300.1	"Protein of unknown function DUF761, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162211.1.A1_at	A	A1TA	POPTR_0004s18020	POPTR_0004s18020 (11)	scaffold_4:18034525-18035008(+) (11)	NA	P81393	Myb-related protein 308	AT4G38620.1	myb domain protein 4 	LOC_Os09g36730.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162211.2.S1_at	A	A1TS	POPTR_0004s18020	POPTR_0004s18020 (11)	scaffold_4:18034241-18034618(-) (11)	NA	P81393	Myb-related protein 308	AT4G38620.1	myb domain protein 4 	LOC_Os09g36730.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162239.1.S1_s_at	A	A2TS	POPTR_0008s08410	POPTR_0008s08410 (11)//POPTR_0010s17860 (9)	scaffold_10:16306382-16308138(+) (9)//scaffold_8:5213206-5214812(-) (11)	NA	Q42961	"Phosphoglycerate kinase, chloroplastic"	AT3G12780.1	phosphoglycerate kinase 1 	LOC_Os05g41640.2	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077510.1	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
PtpAffx.162250.1.S1_at	A	A1TS	POPTR_0001s17620	POPTR_0001s17620 (11)	scaffold_1:14431806-14432550(+) (11)	NA	O04706	Gibberellin 20 oxidase 1-B	AT1G52790.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g32170.1	"oxidoreductase, 2OG-FeII oxygenase domain containing protein, putative, expressed"	Medtr7g107560.1	Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.162259.1.S1_at	A	A1TS	POPTR_0006s11570	POPTR_0006s11570 (10)	scaffold_6:8777657-8777691(-) (10)	NA	Q43497	Monodehydroascorbate reductase	AT3G52880.1	monodehydroascorbate reductase 1 	LOC_Os09g39380.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.162259.1.S1_s_at	A	A1TS	POPTR_0006s11570	POPTR_0006s11570 (11)	scaffold_6:8777459-8778957(-) (11)	NA	Q43497	Monodehydroascorbate reductase	AT3G52880.1	monodehydroascorbate reductase 1 	LOC_Os09g39380.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.162261.1.S1_s_at	A	A1TS	POPTR_0001s19180	POPTR_0001s19180 (11)	scaffold_1:16623248-16624753(-) (11)	NA	P27061	Acid phosphatase 1	AT4G25150.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr8g016170.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
PtpAffx.162289.1.S1_at	A	A1TS	POPTR_0011s10700	POPTR_0011s10700 (9)	scaffold_11:13276759-13277046(-) (9)	NA	P73555	Uncharacterized membrane protein sll0875	AT1G78620.1	"Protein of unknown function DUF92, transmembrane "	LOC_Os01g52864.1	"transmembrane protein, putative, expressed"	Medtr7g062060.1	"Protein of unknown function DUF92, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162289.2.S1_a_at	A	A1TS	POPTR_0011s10700	POPTR_0011s10700 (11)	scaffold_11:13279089-13279166(-) (11)	NA	P73555	Uncharacterized membrane protein sll0875	AT1G78620.1	"Protein of unknown function DUF92, transmembrane "	LOC_Os01g52864.1	"transmembrane protein, putative, expressed"	Medtr7g062060.1	"Protein of unknown function DUF92, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162293.1.S1_at	A	A1TS	POPTR_0009s13750	POPTR_0009s13750 (11)	scaffold_9:10901415-10902757(-) (11)	NA	O22468	WD-40 repeat-containing protein MSI2	AT2G16780.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os03g43890.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g098470.1	"WD-40 repeat-containing protein MSI2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162299.1.S1_at	A	A1TS	POPTR_0014s12630	POPTR_0014s12630 (11)	scaffold_14:9294865-9295331(-) (11)	NA	NA	NA	AT1G02900.1	rapid alkalinization factor 1 	LOC_Os01g15320.1	"RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed"	Medtr7g138890.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162311.1.S1_at	A	A1TS	POPTR_0018s06700	POPTR_0018s06700 (10)	scaffold_18:6741699-6742550(-) (10)	NA	Q8H1S0	Inositol oxygenase 4	AT4G26260.1	myo-inositol oxygenase 4 	LOC_Os06g36560.1	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
PtpAffx.162327.1.S1_at	A	A1TS	POPTR_0001s03680	POPTR_0001s03680 (11)	scaffold_1:2948292-2948690(+) (11)//scaffold_1:9913060-9913457(-) (9)//scaffold_1:11828061-11828459(-) (10)	POPTR_0001s15000 (6)	Q9M7K4	Potassium transporter 5	AT4G13420.1	high affinity K+ transporter 5 	LOC_Os01g70490.1	"potassium transporter, putative, expressed"	Medtr4g136710.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.162338.1.S1_at	A	A1TS	POPTR_0002s14120	POPTR_0002s14120 (11)	scaffold_2:10470282-10471047(-) (11)	NA	NA	NA	AT2G44670.1	Protein of unknown function (DUF581) 	LOC_Os04g49620.1	"DUF581 domain containing protein, expressed"	Medtr8g008600.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16235.1.A1_at	A	A1TS	POPTR_0003s10910	POPTR_0003s10910 (11)	scaffold_3:11771905-11772355(+) (11)	POPTR_0001s00590 (8)	O64769	Potassium transporter 11	AT2G35060.1	K+ uptake permease 11 	LOC_Os04g52390.1	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
PtpAffx.162362.2.S1_a_at	A	A5TS	POPTR_0010s14820	POPTR_0396s00200 (11)//POPTR_0010s14820 (11)//POPTR_0396s00210 (11)//POPTR_0396s00220 (10)//POPTR_0010s14830 (9)	scaffold_10:14291729-14292093(+) (11)//scaffold_10:14296454-14296818(+) (9)//scaffold_396:251-615(+) (11)//scaffold_396:6172-6536(+) (11)//scaffold_396:9777-10141(+) (11)	NA	P52839	Flavonol sulfotransferase-like	AT3G45070.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os12g04320.1	"sulfotransferase domain containing protein, expressed"	Medtr3g061400.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.162362.2.S1_at	A	A1MS	POPTR_0396s00220	POPTR_0396s00220 (10)	scaffold_396:537-6636(+) (11)//scaffold_396:6458-10241(+) (11)	NA	P52839	Flavonol sulfotransferase-like	AT3G45070.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g061400.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
PtpAffx.162367.1.S1_at	A	A1TS	POPTR_0008s07820	POPTR_0008s07820 (10)	scaffold_8:4817996-4818232(+) (10)	NA	Q55141	Acetolactate synthase small subunit	AT5G16290.2	VALINE-TOLERANT 1 	LOC_Os02g39570.1	"ACT domain containing protein, expressed"	Medtr4g137170.1	"Acetolactate synthase, small subunit "	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
PtpAffx.162370.1.S1_at	A	A1TS	POPTR_0008s08640	POPTR_0008s08640 (11)	scaffold_8:5347126-5349944(+) (11)	NA	P42813	Ribonuclease 1	AT2G02990.1	ribonuclease 1 	LOC_Os08g33710.1	"ribonuclease T2 family domain containing protein, expressed"	Medtr5g044290.1	Ribonuclease T2 	NA	GO:0033897|ribonuclease T2 activity||GO:0003723|RNA binding	NA
PtpAffx.162370.2.S1_at	A	A1MS	POPTR_0008s08640	POPTR_0008s08640 (11)	scaffold_8:5347218-5347524(+) (11)	NA	P42813	Ribonuclease 1	AT2G02990.1	ribonuclease 1 	LOC_Os08g33710.1	"ribonuclease T2 family domain containing protein, expressed"	Medtr5g044290.1	Ribonuclease T2 	NA	GO:0033897|ribonuclease T2 activity||GO:0003723|RNA binding	NA
PtpAffx.16240.1.A1_s_at	A	A1TS	POPTR_0001s12560	POPTR_0001s12560 (11)	scaffold_1:9738446-9738847(-) (11)	NA	Q5AYT7	Hsp70 nucleotide exchange factor fes1	AT3G51980.1	ARM repeat superfamily protein 	LOC_Os09g33780.1	expressed protein	Medtr3g110290.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16245.1.S1_at	A	A1TS	POPTR_0010s19420	POPTR_0010s19420 (11)	scaffold_10:17327835-17328041(-) (11)	NA	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
PtpAffx.162483.1.S1_at	A	A1TS	POPTR_0001s22710	POPTR_0001s22710 (11)	scaffold_1:21595909-21597767(+) (11)	NA	Q9SDG8	Protein argonaute 4A	AT2G27040.2	Argonaute family protein 	LOC_Os01g16870.4	"argonaute, putative, expressed"	Medtr5g094930.1	"Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162546.1.A1_at	A	A1TS	POPTR_0003s14430	POPTR_0003s14430 (11)	scaffold_3:14509760-14510239(+) (11)	NA	O22264	Transcription factor MYB12	AT2G47460.1	myb domain protein 12 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162559.1.S1_s_at	A	A2TS	POPTR_0005s18250	POPTR_0007s10890 (11)//POPTR_0005s18250 (11)	scaffold_5:16380585-16381058(+) (11)//scaffold_7:11080997-11081370(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16257.1.S1_at	A	A1TS	POPTR_0001s37040	POPTR_0001s37040 (11)	scaffold_1:35862961-35863490(-) (11)	NA	P30181	DNA topoisomerase 1	AT5G55310.1	DNA topoisomerase 1 beta 	LOC_Os08g05840.1	"DNA topoisomerase 1, putative, expressed"	Medtr3g156670.1	Eukaryotic-like DNA topoisomerase I; ; ; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0003917|DNA topoisomerase type I activity	GO:0005694|chromosome
PtpAffx.162577.1.S1_at	A	A1TS	POPTR_0002s19340	POPTR_0002s19340 (10)	scaffold_2:15299284-15300095(-) (10)	NA	O22899	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase	AT3G62310.1	RNA helicase family protein 	LOC_Os03g19960.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr1g106350.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.162581.1.S1_at	A	A1TS	POPTR_0004s03230	POPTR_0004s03230 (11)	scaffold_4:2175645-2175679(-) (11)	NA	NA	NA	AT4G05150.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os07g37040.1	"PB1 domain containing protein, expressed"	Medtr4g124660.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162581.1.S1_s_at	A	A1TS	POPTR_0004s03230	POPTR_0004s03230 (11)	scaffold_4:2175090-2175659(-) (11)	NA	NA	NA	AT4G05150.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os07g37040.1	"PB1 domain containing protein, expressed"	Medtr4g124660.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16262.1.A1_at	A	A1TS	POPTR_0002s10430	POPTR_0002s10430 (10)	scaffold_2:7516770-7518187(+) (10)	NA	NA	NA	AT4G24610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). 	LOC_Os02g52280.1	expressed protein	Medtr5g074970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162620.1.A1_at	A	A1TS	POPTR_0004s08160	POPTR_0004s08160 (11)	scaffold_4:6670355-6670643(-) (11)	NA	P36101	Uncharacterized protein YKL027W	AT5G37530.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os06g14040.1	"ThiF family domain containing protein, putative, expressed"	Medtr5g085660.1	UBA/THIF-type NAD/FAD binding fold 	NA	GO:0003824|catalytic activity	NA
PtpAffx.16263.1.A1_at	A	A1TS	POPTR_0014s07640	POPTR_0014s07640 (10)	scaffold_14:5726126-5726960(+) (10)	NA	O65268	Putative isoaspartyl peptidase/L-asparaginase 4	AT4G00590.1	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os04g58600.2	"L-asparaginase precursor protein, putative, expressed"	Medtr3g147170.1	"Peptidase T2, asparaginase 2 "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.162632.2.A1_s_at	A	A2TS	POPTR_0018s11370	POPTR_0018s11370 (11)//POPTR_0018s11380 (11)	scaffold_18:12139478-12139643(+) (11)//scaffold_18:12150554-12150719(+) (11)	NA	O23917	Anthranilate N-benzoyltransferase protein 2	AT5G48930.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 	LOC_Os04g42250.4	"transferase family protein, putative, expressed"	AC233655_10.1	Transferase AC233655.2 86615-83679 E EGN_Mt090430 200	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.162634.1.A1_at	A	A1TS	POPTR_0012s04080	POPTR_0012s04080 (11)	scaffold_12:3294653-3296438(+) (11)	NA	O35704	Serine palmitoyltransferase 1	AT4G36480.2	long-chain base1 	LOC_Os02g56300.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr5g080310.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.16265.1.S1_at	A	A1TS	POPTR_0001s35310	POPTR_0001s35310 (11)	scaffold_1:33646137-33646825(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162664.1.S1_s_at	A	A2TS	POPTR_0014s04890	POPTR_0014s04890 (11)//POPTR_0002s13980 (10)	scaffold_14:3780849-3781931(+) (11)//scaffold_2:10369247-10369720(+) (10)	NA	Q93WY4	Probable WRKY transcription factor 12	AT2G44745.1	WRKY family transcription factor 	LOC_Os04g46060.1	OsWRKY36 - Superfamily of TFs having WRKY and zinc finger domains	AC202489_11.1	DNA-binding WRKY AC202489.10 68133-74292 E EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
PtpAffx.162666.1.S1_s_at	A	A1TS	POPTR_0014s09340	POPTR_0014s09340 (11)	scaffold_14:6940615-6943074(+) (11)	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1627.1.S1_a_at	A	A1TS	POPTR_0002s05630	POPTR_0002s05630 (11)	scaffold_2:3700196-3701307(-) (11)	NA	Q84LH8	Transcription factor PIF5	AT2G43010.2	phytochrome interacting factor 4 	LOC_Os12g41650.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g118010.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.16274.1.S1_at	A	A1TS	POPTR_0006s00720	POPTR_0006s00720 (11)	scaffold_6:380291-382024(+) (11)	NA	Q94B74	Nudix hydrolase 2	AT5G47650.1	nudix hydrolase homolog 2 	LOC_Os06g42790.2	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr3g106550.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.162743.1.S1_s_at	A	A1TS	POPTR_0018s10630	POPTR_0018s10630 (11)	scaffold_18:11522963-11523507(+) (11)	NA	O31673	ATP-dependent Clp protease ATP-binding subunit ClpE	AT5G57710.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g15230.1	"heat shock protein-related, putative, expressed"	Medtr8g127930.1	"ATP binding, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162744.1.S1_at	A	A2TS	POPTR_0019s03680	POPTR_0019s03680 (11)//POPTR_0013s04500 (9)	scaffold_13:3090726-3091898(-) (9)//scaffold_19:3760997-3762135(-) (11)	NA	Q9M841	Peroxisome assembly protein 12	AT3G04460.1	peroxin-12 	LOC_Os10g32960.1	"peroxisome assembly protein 12, putative, expressed"	Medtr1g146710.1	"Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
PtpAffx.162745.1.S1_at	A	A1TS	POPTR_0001s14280	POPTR_0001s14280 (11)	scaffold_1:11231582-11232386(+) (11)	POPTR_0001s14290 (6)	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os02g57260.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162751.1.S1_s_at	A	A1TS	POPTR_0016s11610	POPTR_0016s11610 (9)	scaffold_16:10840996-10841816(+) (9)	NA	P46275	"Fructose-1,6-bisphosphatase, chloroplastic"	AT3G54050.2	high cyclic electron flow 1 	LOC_Os03g16050.1	"fructose-1,6-bisphosphatase, putative, expressed"	Medtr2g008160.1	"Inositol phosphatase/fructose-1,6-bisphosphatase "	GO:0005975|carbohydrate metabolic process	GO:0042578|phosphoric ester hydrolase activity	NA
PtpAffx.162759.1.S1_s_at	A	A1TS	POPTR_0001s45410	POPTR_0001s45410 (9)	scaffold_1:45897602-45897750(-) (9)	NA	Q9NQZ5	"StAR-related lipid transfer protein 7, mitochondrial"	AT1G64720.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g02910.1	"membrane related protein CP5, putative, expressed"	Medtr3g122780.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162761.1.S1_at	A	A3TS	POPTR_0010s06010	POPTR_0010s06010 (11)//POPTR_0010s06050 (9)//POPTR_0010s06060 (9)	scaffold_10:7448600-7449346(+) (11)//scaffold_10:7478136-7478886(+) (9)//scaffold_10:7485571-7486321(+) (9)	POPTR_0010s06030 (7)//POPTR_0395s00200 (7)	NA	NA	AT3G01680.1	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g032330.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162795.1.S1_s_at	A	A1TS	POPTR_0015s05200	POPTR_0015s05200 (11)	scaffold_15:5571990-5572085(+) (11)	NA	NA	NA	AT1G14685.1	basic pentacysteine 2 	LOC_Os10g02620.1	"GAGA-binding protein, putative, expressed"	Medtr4g151960.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1628.1.S1_at	A	A1TS	POPTR_0016s14100	POPTR_0016s14100 (10)	scaffold_16:13341563-13342087(+) (10)	NA	Q7X996	CBL-interacting protein kinase 2	AT5G58380.1	SOS3-interacting protein 1 	LOC_Os07g48100.1	"CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr4g134760.1	Tyrosine protein kinase; NAF 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16280.1.S1_at	A	A1MS	POPTR_0008s05740	POPTR_0008s05740 (11)	scaffold_8:3328503-3328905(+) (11)	NA	Q9C7B1	Telomere repeat-binding protein 3	AT3G12560.1	TRF-like 9 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr5g087440.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162800.1.S1_s_at	A	A1TS	POPTR_0001s38630	POPTR_0001s38630 (11)	scaffold_1:37810072-37813522(+) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT5G59180.1	DNA-directed RNA polymerase II 	LOC_Os05g33240.1	"DNA-directed RNA polymerase II subunit RPB7, putative, expressed"	Medtr4g165790.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003723|RNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
PtpAffx.162801.1.S1_at	A	A1TS	POPTR_0007s13210	POPTR_0007s13210 (10)	scaffold_7:13329440-13330271(+) (10)	NA	Q9SW44	DEAD-box ATP-dependent RNA helicase 16	AT4G34910.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g51900.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g099680.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.162801.1.S1_s_at	A	A1TS	POPTR_0007s13210	POPTR_0007s13210 (11)	scaffold_7:13328305-13331612(+) (11)	NA	Q9SW44	DEAD-box ATP-dependent RNA helicase 16	AT4G34910.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g51900.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr1g099680.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
PtpAffx.16281.1.S1_at	A	A1TS	POPTR_0001s10020	POPTR_0001s10020 (11)	scaffold_1:7749324-7749791(-) (11)	NA	P23548	Endoglucanase	AT1G13130.1	Cellulase (glycosyl hydrolase family 5) protein 	LOC_Os04g40510.2	"glycosyl hydrolase family 5 protein, putative, expressed"	Medtr4g124580.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162816.1.S1_at	A	A1TS	POPTR_0010s18120	POPTR_0010s18120 (11)	scaffold_10:16477212-16479045(+) (11)	NA	Q9SAK4	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
PtpAffx.16282.1.S1_at	A	A1TS	POPTR_0014s15290	POPTR_0014s15290 (11)	scaffold_14:11365089-11365220(+) (11)	NA	NA	NA	AT5G42570.1	B-cell receptor-associated 31-like 	LOC_Os05g19040.1	"prefoldin, putative, expressed"	Medtr4g064750.1	B-cell receptor-associated 31-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162844.1.S1_at	A	A1TS	POPTR_0008s01000	POPTR_0008s01000 (11)	scaffold_8:470877-471339(-) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT1G17745.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os06g44460.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
PtpAffx.162859.1.S1_at	A	A1TS	POPTR_0010s07500	POPTR_0010s07500 (9)	scaffold_10:8542154-8543387(-) (9)	NA	NA	NA	AT1G04555.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33380.1); Has 84 Blast hits to 83 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57170.1	expressed protein	Medtr1g065670.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162863.1.S1_at	A	A1TS	POPTR_0011s03140	POPTR_0011s03140 (11)	scaffold_11:3202056-3207686(-) (11)	NA	Q40872	Floral homeotic protein AGAMOUS	AT4G18960.1	K-box region and MADS-box transcription factor family protein  	LOC_Os01g10504.1	"OsMADS3 - MADS-box family gene with MIKCc type-box, expressed"	Medtr4g136380.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
PtpAffx.16287.1.S1_at	A	A1TA	POPTR_0006s00330	POPTR_0006s00330 (11)	scaffold_6:126340-126672(+) (11)	NA	Q9LIQ7	"Pentatricopeptide repeat-containing protein At3g24000, mitochondrial"	AT3G24000.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g30760.1	"pentatricopeptide, putative"	Medtr1g008670.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162872.1.S1_s_at	A	A1TS	POPTR_0010s09420	POPTR_0010s09420 (11)	scaffold_10:10254280-10255838(-) (11)	NA	Q80YD1	"ATP-dependent RNA helicase SUPV3L1, mitochondrial"	AT4G14790.1	"ATP-dependent RNA helicase, mitochondrial (SUV3) "	LOC_Os03g53500.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr5g006820.1	"Helicase, C-terminal "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
PtpAffx.162877.1.S1_at	A	A1TS	POPTR_0007s06490	POPTR_0007s06490 (11)	scaffold_7:4859570-4861367(+) (11)	NA	Q9LV85	Protein CPR-5	AT5G64930.1	"CPR5 protein, putative "	LOC_Os02g53070.1	"HYS1, putative, expressed"	Medtr3g144950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162878.1.S1_at	A	A1TS	POPTR_0002s05280	POPTR_0002s05280 (11)	scaffold_2:3424111-3424960(+) (11)	NA	Q498M4	WD repeat-containing protein 5	AT4G02730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os07g38430.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr1g086290.1	"WD repeat-containing protein 5, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162879.1.S1_s_at	A	A2TS	POPTR_0008s14720	POPTR_0010s10420 (11)//POPTR_0008s14720 (11)	scaffold_10:10930236-10930271(-) (11)//scaffold_8:9772494-9772529(+) (11)	NA	B9DFI7	Probable methyltransferase PMT2	AT1G26850.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os09g24900.2	"methyltransferase, putative, expressed"	AC146568_1.1	"Protein of unknown function DUF248, methyltransferase putative AC146568.11 1159-6078 E EGN_Mt090430 200"	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
PtpAffx.16288.1.S1_at	A	A1TS	POPTR_0001s28490	POPTR_0001s28490 (11)	scaffold_1:27250718-27250905(+) (11)	NA	NA	NA	AT5G58600.1	Plant protein of unknown function (DUF828) 	LOC_Os03g18110.1	"proteins of unknown function domain containing protein, putative, expressed"	Medtr5g079650.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16289.1.A1_at	A	A1TS	POPTR_0001s09910	POPTR_0001s09910 (9)	scaffold_1:7649145-7649315(-) (9)	NA	P22503	Endoglucanase	AT4G09740.1	glycosyl hydrolase 9B14 	LOC_Os08g29770.1	"endoglucanase, putative, expressed"	Medtr5g010040.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
PtpAffx.162910.1.S1_at	A	A1TS	POPTR_0015s14600	POPTR_0015s14600 (11)	scaffold_15:14137125-14137185(-) (11)	NA	Q50EX6	Protein ODORANT1	AT4G12350.1	myb domain protein 42 	LOC_Os09g36250.1	"MYB family transcription factor, putative, expressed"	Medtr3g087570.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162916.1.S1_at	A	A1TS	POPTR_0009s15230	POPTR_0009s15230 (11)	scaffold_9:11817384-11819913(-) (11)	NA	P0CE10	"Putative uncharacterized protein At4g01020, chloroplastic"	AT5G60250.1	zinc finger (C3HC4-type RING finger) family protein 	LOC_Os11g01240.1	IBR domain containing protein	Medtr4g080390.1	"Zinc finger, RING-type; Zinc finger, C6HC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.162917.1.S1_at	A	A1TS	POPTR_0002s14220	POPTR_0002s14220 (11)	scaffold_2:10537554-10539341(-) (11)	NA	Q8RXD6	E3 ubiquitin-protein ligase BRE1-like 1	AT2G44950.1	histone mono-ubiquitination 1 	LOC_Os04g46450.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g040330.1	"Zinc finger, DksA/TraR C4-type; Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162923.1.S1_s_at	A	A1TS	POPTR_0008s07370	POPTR_0008s07370 (11)	scaffold_8:4523081-4523555(-) (11)	NA	Q9SIY8	Laccase-5	AT2G40370.1	laccase 5 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr3g097050.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.162930.2.S1_at	A	A1TS	POPTR_0003s21080	POPTR_0003s21080 (11)	scaffold_3:19376100-19376903(+) (11)	NA	P28752	Tubulin alpha-1 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
PtpAffx.162939.1.S1_s_at	A	A1TS	POPTR_0001s05560	POPTR_0001s05560 (11)	scaffold_1:4264732-4265078(-) (11)	NA	NA	NA	AT5G12950.1	Putative glycosyl hydrolase of unknown function (DUF1680) 	LOC_Os02g10190.1	"DUF1680 domain containing protein, putative, expressed"	Medtr4g086870.1	Protein of unknown function DUF1680 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162945.1.S1_at	A	A1TS	POPTR_0001s34310	POPTR_0001s34310 (11)	scaffold_1:32476578-32477947(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162974.1.S1_s_at	A	A1TS	POPTR_0010s04930	POPTR_0010s04930 (11)	scaffold_10:6172928-6173355(+) (11)	NA	NA	NA	AT1G59650.1	Protein of unknown function (DUF1336) 	LOC_Os03g48660.1	"DUF1336 domain containing protein, expressed"	Medtr5g038290.1	Protein of unknown function DUF1336 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162976.1.S1_at	A	A2TS	POPTR_0017s02340	POPTR_0017s02340 (11)//POPTR_0004s08110 (10)	scaffold_17:1724765-1725142(-) (11)//scaffold_4:6634745-6635113(-) (10)	NA	Q43644	"NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial"	AT5G37510.1	"NADH-ubiquinone dehydrogenase, mitochondrial, putative "	LOC_Os03g50540.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr3g087270.1	Ferredoxin 	GO:0055114|oxidation reduction	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity"	NA
PtpAffx.162982.1.S1_s_at	A	A1TS	POPTR_0015s04290	POPTR_0015s04290 (11)	scaffold_15:4346697-4347682(-) (11)	NA	P90587	66 kDa stress protein	AT3G18060.1	transducin family protein / WD-40 repeat family protein 	LOC_Os01g03510.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g155430.1	"66 kDa stress protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.162989.1.S1_at	A	A1TS	POPTR_0009s13580	POPTR_0009s13580 (10)	scaffold_9:10780757-10781316(-) (10)	NA	Q9SBQ8	Kaempferol 3-O-beta-D-galactosyltransferase	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128440.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008152|metabolic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
PtpAffx.163.1.S1_at	A	A1TS	POPTR_0015s13380	POPTR_0015s13380 (11)	scaffold_15:13373837-13374003(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G07280.1	Leucine-rich repeat transmembrane protein kinase 	LOC_Os01g68870.2	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr3g144560.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.163019.1.S1_s_at	A	A1TS	POPTR_0001s35240	POPTR_0001s35240 (11)	scaffold_1:33534765-33535215(-) (11)	NA	NA	NA	AT3G27670.1	ARM repeat superfamily protein 	LOC_Os01g07490.1	"RST1, putative, expressed"	Medtr6g005020.1	"RST1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163022.1.S1_s_at	A	A2TS	POPTR_0003s01470	POPTR_0133s00270 (11)//POPTR_0003s01470 (11)	scaffold_133:124567-125166(+) (11)//scaffold_3:1345383-1345982(-) (11)	NA	Q8DI01	(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase	AT5G10160.1	Thioesterase superfamily protein 	LOC_Os05g36000.1	"FabA-like domain containing protein, expressed"	Medtr2g008690.1	Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163029.1.S1_at	A	A1TS	POPTR_0010s11970	POPTR_0010s11970 (11)	scaffold_10:12093052-12096551(-) (11)	NA	Q9ZSQ4	"Phosphoglucomutase, cytoplasmic"	AT1G70730.3	Phosphoglucomutase/phosphomannomutase family protein 	LOC_Os03g50480.1	"phosphoglucomutase, putative, expressed"	Medtr4g157910.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
PtpAffx.163033.1.S1_s_at	A	A2TS	POPTR_0004s03780	POPTR_0011s04610 (11)//POPTR_0004s03780 (11)	scaffold_11:4554689-4554756(-) (11)//scaffold_4:2635399-2635466(-) (11)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163046.1.S1_at	A	A1TS	POPTR_0001s21890	POPTR_0001s21890 (11)	scaffold_1:20381702-20382148(-) (11)	NA	Q9C992	3-ketoacyl-CoA synthase 7	AT1G71160.1	3-ketoacyl-CoA synthase 7 	LOC_Os03g12030.1	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr2g007100.1	"Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
PtpAffx.16305.1.S1_at	A	A1TS	POPTR_0001s41200	POPTR_0001s41200 (10)	scaffold_1:40841467-40841982(+) (11)	NA	Q8GUK7	E3 ubiquitin-protein ligase RMA3	AT4G27470.1	RING membrane-anchor 3 	LOC_Os04g44820.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g019250.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163050.1.S1_s_at	A	A1TS	POPTR_0010s09500	POPTR_0010s09500 (11)	scaffold_10:10300205-10300777(+) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT3G02100.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os03g55050.1	"UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed"	Medtr7g012420.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163051.1.S1_at	A	A1TS	POPTR_0007s12750	POPTR_0007s12750 (11)	scaffold_7:12996940-12997093(+) (11)	NA	O82663	"Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial"	AT5G66760.1	succinate dehydrogenase 1-1 	LOC_Os07g04240.1	"succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed"	Medtr5g019940.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.163051.2.S1_s_at	A	A1TS	POPTR_0005s12530	POPTR_0005s12530 (11)	scaffold_5:9311571-9312221(-) (11)	NA	O82663	"Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial"	AT5G66760.1	succinate dehydrogenase 1-1 	LOC_Os07g04240.1	"succinate dehydrogenase flavoprotein subunit,mitochondrial precursor, putative, expressed"	Medtr5g019940.1	"Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; "	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
PtpAffx.16306.1.S1_at	A	A1TS	POPTR_0012s13580	POPTR_0012s13580 (9)	scaffold_12:13681724-13682025(-) (9)	NA	Q9FXW4	Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2	AT2G45550.1	"cytochrome P450, family 76, subfamily C, polypeptide 4 "	LOC_Os03g14400.1	"cytochrome P450, putative, expressed"	Medtr5g007580.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.163069.1.S1_at	A	A1TS	POPTR_0001s41240	POPTR_0001s41240 (9)	scaffold_1:40875147-40875627(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16307.1.S1_at	A	A1MA	POPTR_0089s00200	POPTR_0089s00200 (9)	scaffold_6:17594594-17594974(-) (10)//scaffold_89:25450-25810(-) (9)	POPTR_0006s18860 (8)//POPTR_0496s00200 (8)//POPTR_0594s00200 (7)//POPTR_0637s00200 (7)//POPTR_0006s18830 (6)	Q9C5V5	Glutamate receptor 2.8	AT2G29110.1	glutamate receptor 2.8 	LOC_Os09g25960.1	"glutamate receptor, putative"	Medtr3g138790.1	Ionotropic glutamate receptor; Extracellular ligand-binding receptor 	NA	GO:0004970|ionotropic glutamate receptor activity||GO:0005234|extracellular-glutamate-gated ion channel activity	GO:0016020|membrane
PtpAffx.163078.1.S1_s_at	A	A1TS	POPTR_0002s16080	POPTR_0002s16080 (11)	scaffold_2:11977080-11978418(+) (11)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47040.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr1g086480.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.16308.1.S1_a_at	A	A1TS	POPTR_0005s21730	POPTR_0005s21730 (11)	scaffold_5:20834971-20835043(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G42440.1	Protein kinase superfamily protein 	LOC_Os11g06780.1	"serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed"	Medtr1g124830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16308.1.S1_at	A	A1TS	POPTR_0005s21730	POPTR_0005s21730 (11)	scaffold_5:20834729-20834956(+) (11)	NA	Q9LYN8	Leucine-rich repeat receptor protein kinase EXS	AT5G42440.1	Protein kinase superfamily protein 	LOC_Os11g06780.1	"serine/threonine-protein kinase BRI1-like 1 precursor, putative, expressed"	Medtr1g124830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163089.1.S1_at	A	A1TS	POPTR_0011s10920	POPTR_0011s10920 (10)	scaffold_11:13485201-13485367(+) (10)	NA	Q54XK2	Protein transport protein Sec61 subunit alpha	AT2G34250.2	SecY protein transport family protein 	LOC_Os03g11440.1	"protein transport protein Sec61 subunit alpha, putative, expressed"	Medtr8g092670.1	SecY protein; ABC transporter related 	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
PtpAffx.163092.1.S1_s_at	A	A2TS	POPTR_0008s12860	POPTR_0008s12870 (11)//POPTR_0008s12860 (11)	scaffold_8:8368675-8369041(-) (11)//scaffold_8:8372938-8373304(-) (11)	NA	Q9M9Q6	Serine carboxypeptidase-like 50	AT1G15000.1	serine carboxypeptidase-like 50 	LOC_Os05g50600.1	"OsSCP31 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr5g104840.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
PtpAffx.16310.1.S1_at	A	A1TS	POPTR_0014s03040	POPTR_0014s03040 (10)	scaffold_14:2482190-2482533(+) (10)	NA	NA	NA	NA	NA	LOC_Os09g28510.1	"EF hand family protein, putative, expressed"	Medtr1g024720.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163109.1.S1_s_at	A	A2TS	POPTR_0019s13930	POPTR_0019s13930 (11)//POPTR_1008s00200 (11)	scaffold_1008:216-318(-) (11)//scaffold_19:14773290-14773392(-) (11)	NA	NA	NA	AT4G10270.1	Wound-responsive family protein 	LOC_Os04g54240.1	"wound induced protein, putative, expressed"	Medtr2g095480.1	"wound induced protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163113.1.S1_s_at	A	A1TS	POPTR_0013s08190	POPTR_0013s08190 (11)	scaffold_13:7202924-7204140(-) (11)	NA	Q9CXR1	Dehydrogenase/reductase SDR family member 7	AT3G03330.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os11g16410.3	"oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed"	Medtr7g090010.1	Short-chain dehydrogenase/reductase SDR 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163121.1.S1_at	A	A1TS	POPTR_0609s00200	POPTR_0609s00200 (10)	scaffold_609:2392-3134(+) (10)	POPTR_0016s07820 (6)	P26792	"Beta-fructofuranosidase, insoluble isoenzyme 1"	AT3G52600.2	cell wall invertase 2 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr7g127810.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163132.1.S1_at	A	A1TS	POPTR_0005s06660	POPTR_0005s06660 (10)	scaffold_5:4460743-4461715(-) (10)	NA	Q39111	Gibberellin 20 oxidase 2	AT5G51810.1	gibberellin 20 oxidase 2 	LOC_Os01g66100.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr3g143130.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.163145.1.S1_at	A	A1TS	POPTR_0007s05470	POPTR_0007s05470 (9)	scaffold_7:3556829-3558421(-) (9)	NA	A8KBE0	Oxidation resistance protein 1	AT4G39870.2	TLD-domain containing nucleolar protein 	LOC_Os06g11790.1	"TLD family protein, putative, expressed"	Medtr3g101690.2	TLDc 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16316.1.S1_a_at	A	A1TS	POPTR_0001s14790	POPTR_0001s14790 (11)	scaffold_1:11642113-11642479(-) (11)	NA	Q9SAI5	60S ribosomal protein L7-1	AT1G80750.1	Ribosomal protein L30/L7 family protein 	LOC_Os08g42920.1	"60S ribosomal protein L7, putative, expressed"	Medtr7g065310.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.16316.2.S1_at	A	A1TS	POPTR_0001s14790	POPTR_0001s14790 (10)	scaffold_1:11641862-11641989(-) (10)	NA	Q9SAI5	60S ribosomal protein L7-1	AT1G80750.1	Ribosomal protein L30/L7 family protein 	LOC_Os08g42920.1	"60S ribosomal protein L7, putative, expressed"	Medtr7g065310.1	Ribosomal protein L30 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.16317.1.S1_at	A	A1TS	POPTR_0068s00200	POPTR_0068s00200 (11)	scaffold_68:8692-8777(-) (11)	NA	NA	NA	AT4G13440.1	Calcium-binding EF-hand family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163176.1.S1_at	A	A1TS	POPTR_0011s14190	POPTR_0011s14190 (11)	scaffold_11:16692659-16693093(-) (11)	NA	NA	NA	AT5G54930.1	AT hook motif-containing protein 	NA	NA	Medtr3g068310.1	hypothetical protein 	NA	GO:0003677|DNA binding	NA
PtpAffx.163198.1.S1_s_at	A	A1TS	POPTR_0016s10710	POPTR_0016s10710 (10)	scaffold_16:9002905-9004839(+) (10)	NA	NA	NA	AT2G36885.1	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 58 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). 	LOC_Os03g04470.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163204.1.S1_s_at	A	A1TS	POPTR_0006s20590	POPTR_0006s20590 (11)	scaffold_6:19611225-19611392(-) (11)	NA	NA	NA	AT1G20970.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os08g40250.1	expressed protein	Medtr1g039770.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16324.1.A1_s_at	A	A1TS	POPTR_0015s01320	POPTR_0015s01320 (11)	scaffold_15:819740-820209(-) (11)	NA	Q6AZT7	Nephrocystin-3	AT5G53080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	NA	NA	Medtr3g123620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163243.1.S1_s_at	A	A1TS	POPTR_0003s19330	POPTR_0003s19330 (11)	scaffold_3:18092818-18095300(+) (11)	NA	Q8BTU1	UPF0468 protein C16orf80 homolog	AT3G12300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). 	LOC_Os09g33570.1	"AGAP009680-PA, putative, expressed"	Medtr8g044000.2	Protein of unknown function DUF667 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163265.1.S1_s_at	A	A1TS	POPTR_0010s12030	POPTR_0010s12030 (11)	scaffold_10:12139983-12141818(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163270.1.S1_at	A	A1TS	POPTR_0012s01330	POPTR_0012s01330 (11)	scaffold_12:945030-945526(-) (11)	NA	NA	NA	AT5G53280.1	plastid division1 	LOC_Os02g16450.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163275.1.A1_at	A	A1TS	POPTR_0009s13920	POPTR_0009s13920 (11)	scaffold_9:10996486-10996947(-) (11)	NA	P93768	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G20200.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os09g37000.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.163275.2.S1_a_at	A	A2TS	POPTR_0004s18270	POPTR_0009s13920 (11)//POPTR_0004s18270 (11)	scaffold_4:18222060-18223238(-) (11)//scaffold_9:10998539-10999716(-) (11)	NA	P93768	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G20200.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os09g37000.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.163275.2.S1_at	A	A1TS	POPTR_0009s13920	POPTR_0009s13920 (11)	scaffold_9:10998625-10999915(-) (11)	NA	P93768	Probable 26S proteasome non-ATPase regulatory subunit 3	AT1G20200.1	PAM domain (PCI/PINT associated module) protein 	LOC_Os09g37000.1	"26S proteasome non-ATPase regulatory subunit 3, putative, expressed"	Medtr3g157050.1	Proteasome component region PCI; 	GO:0042176|regulation of protein catabolic process||GO:0009057|macromolecule catabolic process	GO:0030234|enzyme regulator activity	GO:0000502|proteasome complex
PtpAffx.163276.1.S1_s_at	A	A1TS	POPTR_0006s16660	POPTR_0006s16660 (11)	scaffold_6:14552204-14552674(+) (11)	NA	Q9N5K2	"DNA-directed RNA polymerases I, II, and III subunit RPABC1"	AT3G22320.1	Eukaryotic rpb5 RNA polymerase subunit family protein 	LOC_Os01g59140.1	"DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed"	Medtr5g005650.1	"RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	GO:0005634|nucleus
PtpAffx.163285.1.S1_at	A	A1TS	POPTR_0017s03550	POPTR_0017s03550 (11)	scaffold_17:2568714-2571775(-) (11)	NA	NA	NA	NA	NA	LOC_Os10g35060.1	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr6g083840.1	Metallophosphoesterase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.163305.1.S1_at	A	A1TS	POPTR_0018s09390	POPTR_0018s09390 (9)	scaffold_18:10287998-10288428(-) (10)	NA	Q54RA4	Probable iron/ascorbate oxidoreductase DDB_G0283291	AT1G35190.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os01g09300.3	"oxidoreductase, putative, expressed"	Medtr4g159750.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.163316.1.S1_at	A	A1TS	POPTR_0006s22010	POPTR_0006s22010 (11)	scaffold_6:21031211-21031704(-) (11)	NA	Q9CAF2	"Nudix hydrolase 26, chloroplastic"	AT3G10620.1	nudix hydrolase homolog 26 	LOC_Os04g58900.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr1g112260.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
PtpAffx.163331.1.S1_s_at	A	A1TS	POPTR_0002s11220	POPTR_0002s11220 (11)	scaffold_2:8284271-8284773(-) (11)	NA	Q9FIE3	Protein VERNALIZATION INSENSITIVE 3	AT2G18880.1	vernalization5/VIN3-like 	LOC_Os02g05840.1	"VIL2 protein, putative, expressed"	Medtr5g075380.1	"Protein VERNALIZATION INSENSITIVE 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163372.1.S1_at	A	A1TS	POPTR_0002s24870	POPTR_0002s24870 (11)	scaffold_2:22089469-22091629(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163372.1.S1_s_at	A	A1TS	POPTR_0002s24860	POPTR_0002s24860 (10)	scaffold_2:22089726-22091708(-) (11)//scaffold_2:22091884-22091962(-) (10)	POPTR_0002s24870 (6)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163373.1.S1_at	A	A1TS	POPTR_0008s04480	POPTR_0008s04480 (9)	scaffold_8:2527063-2527276(-) (9)	NA	NA	NA	AT5G13610.1	Protein of unknown function (DUF155) 	LOC_Os07g49410.1	"uncharacterized ACR, YagE family COG1723 containing protein, expressed"	Medtr5g046070.1	Protein of unknown function DUF155 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1634.1.S1_s_at	A	A1TS	POPTR_0005s08190	POPTR_0005s08190 (11)	scaffold_5:5633070-5633552(-) (11)	NA	NA	NA	AT2G22125.1	binding 	LOC_Os11g08090.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.1634.3.A1_at	A	A1TS	POPTR_0001s23240	POPTR_0001s23240 (10)	scaffold_1:22513553-22513898(-) (10)	NA	NA	NA	AT2G26920.1	Ubiquitin-associated/translation elongation factor EF1B protein 	LOC_Os05g33850.1	"UBA/TS-N domain containing protein, expressed"	Medtr5g095840.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163405.1.S1_at	A	A2TS	POPTR_0005s15890	POPTR_0005s15890 (11)//POPTR_0005s15870 (10)	scaffold_5:12520390-12530399(-) (11)//scaffold_5:12530581-12530870(-) (10)	NA	P77806	Aminotransferase ybdL	AT1G77670.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os09g28050.1	"asparate aminotransferase, putative, expressed"	Medtr3g097750.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.163405.2.S1_a_at	A	A2TS	POPTR_0002s08650	POPTR_0005s15890 (11)//POPTR_0002s08650 (11)	scaffold_2:6060091-6060275(-) (11)//scaffold_5:12531392-12531576(-) (11)	NA	P77806	Aminotransferase ybdL	AT1G77670.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os09g28050.1	"asparate aminotransferase, putative, expressed"	Medtr3g097750.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.163405.2.S1_at	A	A1TS	POPTR_0005s15890	POPTR_0005s15890 (11)	scaffold_5:12531368-12532637(-) (11)	NA	P77806	Aminotransferase ybdL	AT1G77670.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os09g28050.1	"asparate aminotransferase, putative, expressed"	Medtr3g097750.1	"Aminotransferase, class I and II; "	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
PtpAffx.163410.1.S1_s_at	A	A1TS	POPTR_0011s01410	POPTR_0011s01410 (11)	scaffold_11:992465-993894(-) (11)	NA	NA	NA	AT1G62305.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g50040.1	"DNA binding protein, putative, expressed"	Medtr4g143290.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
PtpAffx.163413.1.S1_s_at	A	A1TS	POPTR_0013s05500	POPTR_0013s05500 (11)	scaffold_13:3929758-3930751(+) (11)	POPTR_0019s04980 (6)	Q552J0	T-complex protein 1 subunit theta	AT3G03960.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g59020.1	"T-complex protein, putative, expressed"	Medtr6g030660.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
PtpAffx.163414.1.S1_at	A	A1TS	POPTR_0017s10560	POPTR_0017s10560 (11)	scaffold_17:9998832-10000163(-) (11)	NA	NA	NA	AT3G27470.2	Protein of unknown function (DUF707) 	LOC_Os02g19510.2	"lysine ketoglutarate reductase trans-splicing related 1, putative, expressed"	Medtr3g102390.1	Protein of unknown function DUF707 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163417.1.S1_at	A	A1TS	POPTR_0006s26160	POPTR_0006s26160 (11)	scaffold_6:24444631-24445201(+) (11)	NA	NA	NA	AT5G11460.1	Protein of unknown function (DUF581) 	LOC_Os01g08520.1	"DUF581 domain containing protein, expressed"	Medtr3g135880.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163418.1.S1_s_at	A	A1TS	POPTR_0006s09510	POPTR_0006s09510 (11)	scaffold_6:6989649-6990014(-) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os05g37900.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163418.2.S1_s_at	A	A1TS	POPTR_0016s09960	POPTR_0016s09960 (11)	scaffold_16:8092397-8092654(+) (11)	NA	NA	NA	AT5G05830.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os01g63150.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g088770.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163425.1.S1_s_at	A	A1TS	POPTR_0010s10430	POPTR_0010s10430 (11)	scaffold_10:10942057-10942677(+) (11)	POPTR_0008s14700 (8)	NA	NA	AT1G70280.2	NHL domain-containing protein 	LOC_Os02g49770.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163431.1.S1_at	A	A2TS	POPTR_0016s10330	POPTR_0016s10330 (11)//POPTR_0016s10310 (9)	scaffold_16:8541124-8541532(-) (10)//scaffold_16:8558137-8558627(-) (11)//scaffold_16:8578015-8578505(-) (9)	POPTR_0016s10350 (8)//POPTR_0016s10340 (7)	P17801	Putative receptor protein kinase ZmPK1	AT1G34300.1	lectin protein kinase family protein 	LOC_Os01g47840.1	"S-locus-like receptor protein kinase, putative, expressed"	Medtr7g064600.1	Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163432.1.S1_s_at	A	A1TS	POPTR_0014s10800	POPTR_0014s10800 (11)	scaffold_14:8081491-8082777(-) (11)	NA	O60155	Putative prolyl-tRNA synthetase C19C7.06	AT3G62120.2	Class II aaRS and biotin synthetases superfamily protein 	LOC_Os12g25710.3	"bifunctional aminoacyl-tRNA synthetase, putative, expressed"	Medtr7g134100.1	"Prolyl-tRNA synthetase, bacterial "	GO:0006433|prolyl-tRNA aminoacylation||GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004827|proline-tRNA ligase activity	GO:0005737|cytoplasm
PtpAffx.163434.1.S1_at	A	A1TS	POPTR_0016s02890	POPTR_0016s02890 (10)	scaffold_16:1429361-1429647(-) (10)	NA	NA	NA	AT3G56590.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g71220.1	"zinc finger protein, putative, expressed"	Medtr7g105620.1	"Putative RING zinc finger protein-, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163436.1.S1_s_at	A	A1TS	POPTR_0003s09690	POPTR_0003s09690 (11)	scaffold_3:10958133-10959922(+) (11)	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr5g028110.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
PtpAffx.163438.1.S1_at	A	A2TS	POPTR_0012s10780	POPTR_0012s10780 (11)//POPTR_0015s11650 (11)	scaffold_12:11473323-11473629(+) (11)//scaffold_15:12205301-12205607(+) (11)	NA	Q9LSE2	Transcription factor ICE1	AT3G26744.4	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os11g32100.1	"inducer of CBF expression 1, putative, expressed"	Medtr7g096910.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
PtpAffx.163444.1.S1_at	A	A1TS	POPTR_0006s28720	POPTR_0006s28720 (11)	scaffold_6:26325719-26326986(-) (11)	NA	Q16629	Serine/arginine-rich splicing factor 7	AT4G31580.2	serine/arginine-rich 22 	LOC_Os06g08840.7	"RNA recognition motif containing protein, expressed"	Medtr1g010600.1	"RNA-binding region RNP-1 (RNA recognition motif); Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
PtpAffx.16345.1.S1_at	A	A1TS	POPTR_0006s15470	POPTR_0006s15470 (10)	scaffold_6:12856835-12859632(+) (10)	NA	A1SYV1	Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase	AT4G29540.2	bacterial transferase hexapeptide repeat-containing protein 	LOC_Os01g52400.1	"bacterial transferase hexapeptide domain containing protein, expressed"	NA	NA	NA	GO:0016740|transferase activity	NA
PtpAffx.163452.1.S1_at	A	A1MS	POPTR_0010s19230	POPTR_0010s19230 (10)	scaffold_10:17208362-17208581(+) (10)	NA	P56286	Eukaryotic translation initiation factor 2 subunit alpha	AT2G40290.1	Eukaryotic translation initiation factor 2 subunit 1 	LOC_Os03g18510.1	expressed protein	Medtr3g094730.1	"RNA binding S1; Eukaryotic translation initiation factor 2, alpha subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005850|eukaryotic translation initiation factor 2 complex
PtpAffx.163455.1.S1_at	A	A2MS	POPTR_0004s20430	POPTR_0009s15730 (10)//POPTR_0004s20430 (10)	scaffold_4:20003594-20003632(-) (10)//scaffold_9:12101910-12101948(-) (10)	NA	Q39238	Serine/threonine-protein kinase TOUSLED	AT5G20930.1	Protein kinase superfamily protein 	LOC_Os03g53880.1	"serine/threonine-protein kinase TOUSLED, putative, expressed"	Medtr5g094260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163455.1.S1_s_at	A	A1TS	POPTR_0004s20430	POPTR_0004s20430 (11)	scaffold_4:20003223-20004071(-) (11)	NA	Q39238	Serine/threonine-protein kinase TOUSLED	AT5G20930.1	Protein kinase superfamily protein 	LOC_Os03g53880.1	"serine/threonine-protein kinase TOUSLED, putative, expressed"	Medtr5g094260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163456.1.S1_at	A	A1TS	POPTR_0002s24550	POPTR_0002s24550 (10)	scaffold_2:21904624-21906832(-) (10)	NA	Q6NLW5	Protein XRI1	AT5G48720.2	x-ray induced transcript 1 	LOC_Os01g68930.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163460.1.S1_s_at	A	A1MS	POPTR_0003s21210	POPTR_0003s21210 (11)	scaffold_3:19454197-19454534(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59100.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity"	NA
PtpAffx.163461.1.S1_at	A	A1TS	POPTR_0015s14350	POPTR_0015s14350 (9)	scaffold_15:13988144-13989669(+) (9)	NA	Q9FHM4	65-kDa microtubule-associated protein 3	AT5G51600.1	Microtubule associated protein (MAP65/ASE1) family protein 	LOC_Os01g49200.1	"microtubule associated protein, putative, expressed"	Medtr7g034740.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163462.1.S1_at	A	A1TS	POPTR_0017s04660	POPTR_0017s04660 (10)	scaffold_17:3558845-3559706(-) (10)	POPTR_0007s01200 (6)	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163466.1.S1_at	A	A1MS	POPTR_0017s01040	POPTR_0017s01040 (10)	scaffold_17:763617-763936(+) (10)	NA	Q84K34	E3 ubiquitin-protein ligase SINA-like 10	AT5G37930.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os01g03290.1	seven in absentia protein family domain containing protein	AC235662_15.1	TRAF-like AC235662.1 70113-67206 E EGN_Mt090430 200	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
PtpAffx.163467.1.S1_s_at	A	A1TS	POPTR_0001s46430	POPTR_0001s46430 (11)	scaffold_1:46819533-46820900(-) (11)	NA	Q8H0W2	Histone deacetylase 9	AT3G44680.1	histone deacetylase 9 	LOC_Os04g33480.1	"histone deacetylase, putative, expressed"	Medtr4g073130.1	Histone deacetylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163470.1.S1_s_at	A	A1TS	POPTR_0005s24880	POPTR_0005s24880 (11)	scaffold_5:23301570-23303322(+) (11)	NA	Q06190	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha	AT5G44090.1	Calcium-binding EF-hand family protein 	LOC_Os10g33680.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitbeta, putative, expressed"	Medtr1g093540.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163478.1.S1_at	A	A1TS	POPTR_0010s10490	POPTR_0010s10490 (11)	scaffold_10:10986730-10987651(+) (11)	NA	Q4R380	DNA polymerase lambda	AT1G10520.1	DNA polymerase lambda (POLL) 	LOC_Os06g13020.2	"DNA polymerase lambda, putative, expressed"	Medtr5g041030.1	"BRCT; DNA nucleotidylexotransferase (TDT); DNA polymerase, beta-like region "	NA	GO:0016779|nucleotidyltransferase activity	GO:0005622|intracellular
PtpAffx.163500.1.S1_at	A	A1TS	POPTR_0014s06410	POPTR_0014s06410 (11)	scaffold_14:4867419-4867599(-) (11)	NA	NA	NA	AT2G45320.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; Has 45 Blast hits to 45 proteins in 16 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os06g37430.2	expressed protein	Medtr4g069860.1	"binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16351.1.S1_at	A	A1TS	POPTR_0003s13910	POPTR_0003s13910 (11)	scaffold_3:14133341-14133813(-) (11)	NA	Q9C7W2	Ethylene-responsive transcription factor ERF061	AT1G64380.1	Integrase-type DNA-binding superfamily protein 	LOC_Os05g49700.1	"AP2 domain containing protein, expressed"	Medtr5g009440.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.163511.1.S1_at	A	A1TS	POPTR_0018s09260	POPTR_0018s09260 (11)	scaffold_18:10112646-10112921(+) (11)	NA	NA	NA	AT2G44970.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g48416.2	"lipase-related, putative, expressed"	Medtr8g006030.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163511.1.S1_s_at	A	A1TS	POPTR_0018s09260	POPTR_0018s09260 (11)	scaffold_18:10112907-10114144(+) (11)	NA	NA	NA	AT2G44970.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g48416.2	"lipase-related, putative, expressed"	Medtr8g006030.1	"lipase-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163518.1.S1_at	A	A1TS	POPTR_0008s05580	POPTR_0008s05580 (9)	scaffold_8:3241477-3242329(-) (9)	NA	Q9Y673	Dolichyl-phosphate beta-glucosyltransferase	AT2G39630.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g60700.1	"dolichyl-phosphate beta-glycosyltransferase, putative, expressed"	Medtr7g027050.1	"Glycosyl transferase, family 2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163537.1.S1_at	A	A1TS	POPTR_0010s17720	POPTR_0010s17720 (9)	scaffold_10:16205220-16206808(+) (9)	NA	NA	NA	AT3G19810.1	Protein of unknown function (DUF177) 	LOC_Os02g58450.1	"uncharacterized ACR, COG1399 family protein, expressed"	Medtr4g135210.1	Protein of unknown function DUF177 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163542.1.S1_s_at	A	A1TS	POPTR_0004s04190	POPTR_0004s04190 (11)	scaffold_4:3009795-3011785(+) (11)	NA	P32375	Allantoinase	AT4G04955.1	allantoinase 	LOC_Os04g58390.1	"allantoinase, putative, expressed"	Medtr2g014750.3	"Metallo-dependent hydrolase, composite "	NA	GO:0016787|hydrolase activity	NA
PtpAffx.163548.1.S1_s_at	A	A2TS	POPTR_0003s02140	POPTR_0003s02320 (11)//POPTR_0003s02140 (11)	scaffold_3:2255329-2255505(+) (11)//scaffold_3:2398925-2399101(+) (11)	POPTR_0001s21200 (7)	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127070.1	"protein binding, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163556.1.S1_s_at	A	A1TS	POPTR_0010s19910	POPTR_0010s19910 (11)	scaffold_10:17674339-17675402(-) (11)	NA	Q93063	Exostosin-2	AT3G55830.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os06g49150.1	"exostosin, putative, expressed"	Medtr5g089480.1	"EXTL2, alpha-1,4-N-acetylhexosaminyltransferase "	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0031227|intrinsic to endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
PtpAffx.163559.1.S1_at	A	A1TS	POPTR_0006s27150	POPTR_0006s27150 (11)	scaffold_6:25146885-25147058(+) (11)	NA	Q15B89	UDP-N-acetylglucosamine/UDP-glucose/GDP-mannose transporter (Fragment)	AT4G32272.1	Nucleotide/sugar transporter family protein 	LOC_Os02g40030.1	"transporter family protein, putative, expressed"	Medtr1g014080.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
PtpAffx.163561.1.S1_a_at	A	A4TS	POPTR_0006s22710	POPTR_0609s00210 (11)//POPTR_0609s00200 (11)//POPTR_0006s22710 (11)//POPTR_0016s07820 (11)	scaffold_16:5639785-5639847(-) (11)//scaffold_6:21639367-21639429(-) (11)//scaffold_609:1039-1101(+) (11)//scaffold_609:11707-11769(+) (11)	NA	P26792	"Beta-fructofuranosidase, insoluble isoenzyme 1"	AT3G52600.1	cell wall invertase 2 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr7g127810.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163561.1.S1_at	A	A1TS	POPTR_0006s22710	POPTR_0006s22710 (11)	scaffold_6:21639240-21641981(-) (11)	NA	P26792	"Beta-fructofuranosidase, insoluble isoenzyme 1"	AT3G52600.1	cell wall invertase 2 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr7g127810.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163561.1.S1_x_at	A	A1TS	POPTR_0006s22710	POPTR_0006s22710 (11)	scaffold_6:21639240-21641981(-) (11)	NA	P26792	"Beta-fructofuranosidase, insoluble isoenzyme 1"	AT3G52600.1	cell wall invertase 2 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr7g127810.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163562.1.S1_s_at	A	A4TS	POPTR_0019s11810	POPTR_0019s11850 (11)//POPTR_0019s11810 (11)//POPTR_0019s11830 (11)//POPTR_0019s11860 (11)	scaffold_19:13046713-13047401(+) (11)//scaffold_19:13060772-13066991(+) (11)//scaffold_19:13077466-13078156(+) (11)//scaffold_19:13087962-13088643(+) (11)	POPTR_0019s11820 (6)	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.163577.1.S1_at	A	A1TS	POPTR_0006s20980	POPTR_0006s20980 (11)	scaffold_6:20102509-20104937(-) (11)	NA	NA	NA	AT2G41945.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os06g10440.1	"gb protein, putative, expressed"	Medtr4g069990.1	"gb protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16358.1.S1_s_at	A	A1TS	POPTR_0003s01110	POPTR_0003s01110 (10)	scaffold_3:968258-968355(+) (10)	NA	Q9C958	Serine/threonine-protein kinase SRK2B	AT1G60940.2	SNF1-related protein kinase 2.10 	LOC_Os04g35240.1	"CAMK_CAMK_like.25 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g006410.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.16362.1.S1_at	A	A1TS	POPTR_0011s06880	POPTR_0011s06880 (11)	scaffold_11:7586611-7587168(+) (11)//scaffold_5:21209551-21216981(-) (9)	POPTR_0005s22230 (8)//POPTR_0005s22240 (6)	Q9FY79	Laccase-14	AT5G09360.1	laccase 14 	LOC_Os02g51440.1	"laccase precursor protein, putative, expressed"	Medtr3g147860.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.163629.1.S1_a_at	A	A1TS	POPTR_0010s15120	POPTR_0010s15120 (11)	scaffold_10:14473571-14477166(-) (11)	NA	NA	NA	AT4G16146.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os03g19220.2	expressed protein	Medtr2g038860.1	Lg106-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16363.1.S1_at	A	A1TS	POPTR_0008s19640	POPTR_0008s19640 (10)	scaffold_8:13526390-13526724(-) (10)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT1G27210.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163630.1.S1_at	A	A1TS	POPTR_0005s17290	POPTR_0005s17290 (11)	scaffold_5:14549897-14550905(-) (11)	NA	A2YNT8	Serine/threonine-protein kinase SAPK2	AT1G78290.3	Protein kinase superfamily protein 	LOC_Os07g42940.1	"CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr5g073720.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
PtpAffx.163634.1.S1_at	A	A1TS	POPTR_0015s06960	POPTR_0015s06960 (11)	scaffold_15:7969524-7969806(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163635.1.S1_at	A	A1TS	POPTR_0016s12540	POPTR_0016s12540 (11)	scaffold_16:11975148-11975958(+) (11)	NA	Q96329	"Acyl-coenzyme A oxidase 4, peroxisomal"	AT3G51840.1	acyl-CoA oxidase 4 	LOC_Os01g06600.1	"glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g081040.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.163635.2.S1_a_at	A	A1TS	POPTR_0006s10270	POPTR_0006s10270 (11)	scaffold_6:7682987-7683764(+) (11)	NA	Q96329	"Acyl-coenzyme A oxidase 4, peroxisomal"	AT3G51840.1	acyl-CoA oxidase 4 	LOC_Os05g07090.1	"acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed"	Medtr4g080840.1	"Acyl-CoA dehydrogenase, N-terminal; "	GO:0055114|oxidation reduction	GO:0003995|acyl-CoA dehydrogenase activity	NA
PtpAffx.16365.1.A1_at	A	A1TS	POPTR_0007s15050	POPTR_0007s15050 (10)	scaffold_7:14698288-14698546(-) (10)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT1G32910.1	HXXXD-type acyl-transferase family protein 	LOC_Os04g51980.1	"transferase family domain containing protein, expressed"	Medtr5g097970.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.163665.1.S1_s_at	A	A1TS	POPTR_0012s14410	POPTR_0012s14410 (11)	scaffold_12:14318827-14319293(+) (11)	NA	NA	NA	AT5G62280.1	Protein of unknown function (DUF1442) 	NA	NA	Medtr6g069960.1	Protein of unknown function DUF1442 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163669.1.S1_at	A	A1TS	POPTR_0016s09990	POPTR_0016s09990 (11)	scaffold_16:8125977-8126545(+) (11)	POPTR_0006s09480 (6)	Q93YV9	F-box protein SKIP8	AT3G09250.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os02g54710.1	expressed protein	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0004518|nuclease activity	NA
PtpAffx.16367.2.S1_at	A	A1TS	POPTR_0002s23470	POPTR_0002s23470 (11)	scaffold_2:20993842-20993996(-) (11)	NA	Q9LRT1	Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040	AT3G28040.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os01g72700.1	expressed protein	Medtr7g022110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
PtpAffx.163673.1.S1_at	A	A1TS	POPTR_0015s10610	POPTR_0015s10610 (11)	scaffold_15:11476162-11477696(-) (11)	NA	Q14746	Conserved oligomeric Golgi complex subunit 2	AT4G24840.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterPro:IPR009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g63250.1	"brefeldin A-sensitive Golgi protein-like, putative, expressed"	Medtr8g109320.1	"COG complex component, COG2 "	GO:0007030|Golgi organization||GO:0015031|protein transport	NA	GO:0016020|membrane
PtpAffx.16368.1.S1_at	A	A1TS	POPTR_0019s10760	POPTR_0019s10760 (11)	scaffold_19:12272468-12274900(-) (11)	NA	Q7SZN2	RING finger protein 170	AT1G72175.1	RING/U-box protein with domain of unknown function (DUF 1232) 	LOC_Os03g62250.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g013260.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163684.1.S1_at	A	A1TS	POPTR_0003s16470	POPTR_0003s16470 (11)	scaffold_3:16054602-16055493(-) (11)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g33510.2	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g005100.1	"Uncharacterized protein At2g33490, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163684.2.S1_a_at	A	A1TS	POPTR_0003s16470	POPTR_0003s16470 (11)	scaffold_3:16054581-16055218(-) (11)	NA	O22799	Uncharacterized protein At2g33490	AT2G33490.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os09g33510.2	"hydroxyproline-rich glycoprotein family protein, putative, expressed"	Medtr7g005100.1	"Uncharacterized protein At2g33490, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163698.1.S1_s_at	A	A1TS	POPTR_0005s23300	POPTR_0005s23300 (11)	scaffold_5:22123589-22124021(+) (11)	NA	NA	NA	AT4G02715.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr1g084110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163699.1.S1_s_at	A	A1TS	POPTR_0007s11750	POPTR_0007s11750 (10)	scaffold_7:12144615-12146216(-) (10)	NA	Q9SE93	Polyneuridine-aldehyde esterase	AT2G23610.1	methyl esterase 3 	LOC_Os05g30760.1	"esterase, putative, expressed"	Medtr5g018350.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163708.1.S1_s_at	A	A1TS	POPTR_0010s14860	POPTR_0010s14860 (11)	scaffold_10:14327410-14329607(+) (11)	NA	Q6CBH3	"Probable hexaprenyl pyrophosphate synthase, mitochondrial"	AT2G34630.2	geranyl diphosphate synthase 1 	LOC_Os06g46450.1	"polyprenyl synthetase, putative, expressed"	Medtr5g019360.1	Polyprenyl synthetase 	GO:0008299|isoprenoid biosynthetic process	NA	NA
PtpAffx.16371.1.A1_at	A	A1TS	POPTR_0035s00320	POPTR_0035s00320 (11)	scaffold_35:176402-176548(-) (11)	NA	Q40392	TMV resistance protein N	AT5G36930.2	Disease resistance protein (TIR-NBS-LRR class) family 	LOC_Os07g37950.1	expressed protein	Medtr8g021790.1	TIR 	GO:0007165|signal transduction||GO:0045087|innate immune response||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0004888|transmembrane receptor activity	GO:0031224|intrinsic to membrane
PtpAffx.163732.1.S1_s_at	A	A2TS	POPTR_0002s10330	POPTR_0002s10330 (11)//POPTR_0005s17620 (11)	scaffold_2:7420741-7420937(-) (11)//scaffold_5:15201528-15201724(-) (11)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT4G24660.1	homeobox protein 22 	LOC_Os09g29130.1	"ZF-HD protein dimerisation region containing protein, expressed"	Medtr5g074550.1	"Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation region; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163752.1.S1_s_at	A	A1TS	POPTR_0014s13720	POPTR_0014s13720 (11)	scaffold_14:10052431-10052643(-) (11)	NA	P35614	Eukaryotic peptide chain release factor subunit 1-3	AT3G26618.1	eukaryotic release factor 1-3 	LOC_Os03g49580.1	"eukaryotic peptide chain release factor subunit 1-1, putative, expressed"	Medtr7g099660.1	Peptide chain release factor eRF/aRF subunit 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163753.1.A1_at	A	A1TS	POPTR_0004s10350	POPTR_0004s10350 (11)	scaffold_4:8899328-8900205(+) (11)	NA	Q9UI10	Translation initiation factor eIF-2B subunit delta	AT5G38640.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os03g44310.1	"initiation factor 2 subunit family domain containing protein, expressed"	Medtr5g033160.1	Initiation factor 2B related 	GO:0044237|cellular metabolic process	NA	NA
PtpAffx.163761.1.S1_at	A	A1TS	POPTR_0018s10990	POPTR_0018s10990 (11)	scaffold_18:11809495-11810923(-) (11)	NA	Q8WV93	Lactation elevated protein 1	AT4G28070.2	AFG1-like ATPase family protein 	LOC_Os08g16480.2	"ATPase, AFG1 family domain containing protein, expressed"	Medtr1g013700.1	AFG1-like ATPase 	NA	GO:0005524|ATP binding	NA
PtpAffx.163787.1.S1_s_at	A	A1TS	POPTR_0010s04480	POPTR_0010s04480 (11)	scaffold_10:5565282-5566544(-) (11)	NA	A3KPN8	Tetratricopeptide repeat protein 38	AT1G27150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g48380.1	expressed protein	Medtr5g038480.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163796.1.S1_s_at	A	A1TS	POPTR_0019s09260	POPTR_0019s09260 (11)	scaffold_19:10833247-10834863(+) (11)	NA	Q05047	Secologanin synthase	AT5G24910.1	"cytochrome P450, family 714, subfamily A, polypeptide 1 "	LOC_Os12g02640.1	"cytochrome P450 72A1, putative, expressed"	Medtr3g121810.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.163802.1.A1_at	A	A1TS	POPTR_0009s09590	POPTR_0009s09590 (11)	scaffold_9:8450173-8450677(+) (11)	NA	O82333	Probable indole-3-acetic acid-amido synthetase GH3.1	AT2G14960.1	Auxin-responsive GH3 family protein 	LOC_Os07g40290.1	"OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr5g016320.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163810.1.S1_at	A	A1TS	POPTR_0014s18590	POPTR_0014s18590 (9)	scaffold_14:15925612-15928786(+) (9)	NA	Q28D01	WD repeat-containing protein 26	AT5G43920.1	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163811.1.S1_at	A	A1MS	POPTR_0010s22830	POPTR_0010s22830 (11)	scaffold_10:19601985-19602023(+) (11)	NA	P32483	Para-aminobenzoate synthase	AT2G28880.1	para-aminobenzoate (PABA) synthase family protein 	LOC_Os06g48620.1	"4-amino-4-deoxychorismate synthase, putative, expressed"	Medtr1g121290.1	Anthranilate synthase component I and chorismate binding protein 	GO:0009058|biosynthetic process	GO:0016833|oxo-acid-lyase activity	NA
PtpAffx.163811.1.S1_s_at	A	A1TS	POPTR_0010s22830	POPTR_0010s22830 (11)	scaffold_10:19601915-19602696(+) (11)	NA	P32483	Para-aminobenzoate synthase	AT2G28880.1	para-aminobenzoate (PABA) synthase family protein 	LOC_Os06g48620.1	"4-amino-4-deoxychorismate synthase, putative, expressed"	Medtr1g121290.1	Anthranilate synthase component I and chorismate binding protein 	GO:0009058|biosynthetic process	GO:0016833|oxo-acid-lyase activity	NA
PtpAffx.163820.1.S1_at	A	A1TS	POPTR_0008s13630	POPTR_0008s13630 (11)	scaffold_8:8977877-8978554(-) (11)	NA	Q8C1Y8	Vacuolar fusion protein CCZ1 homolog	AT1G16020.1	Protein of unknown function (DUF1712) 	LOC_Os08g33076.1	"myrosinase precursor, putative, expressed"	Medtr4g156530.1	"myrosinase precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163828.1.S1_s_at	A	A1TS	POPTR_0001s20610	POPTR_0001s20610 (11)	scaffold_1:18604969-18605433(+) (11)	NA	NA	NA	AT1G72790.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	Medtr2g120690.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163838.2.S1_a_at	A	A2TS	POPTR_0008s12480	POPTR_0008s12480 (11)//POPTR_0010s12790 (11)	scaffold_10:12765120-12766088(-) (11)//scaffold_8:8070427-8071407(+) (11)	NA	Q9ZU52	"Probable fructose-bisphosphate aldolase 3, chloroplastic"	AT2G01140.1	Aldolase superfamily protein 	LOC_Os01g02880.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
PtpAffx.163839.1.S1_at	A	A1TS	POPTR_0013s02780	POPTR_0013s02780 (11)	scaffold_13:1675090-1675807(+) (11)	NA	O22494	"Glutathione synthetase, chloroplastic"	AT5G27380.1	glutathione synthetase 2 	LOC_Os11g42350.1	"glutathione synthetase, chloroplast precursor, putative, expressed"	Medtr7g139670.1	"Eukaryotic glutathione synthase; Eukaryotic glutathione synthase, ATP-binding; "	GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004363|glutathione synthase activity||GO:0005524|ATP binding	NA
PtpAffx.163841.1.S1_at	A	A1TS	POPTR_0010s13170	POPTR_0010s13170 (11)	scaffold_10:13040248-13040713(-) (11)	NA	Q5XGR8	Beta-lactamase-like protein 2	AT1G25375.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os01g04200.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr1g140580.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163845.1.S1_at	A	A1TS	POPTR_0015s05240	POPTR_0015s05240 (9)	scaffold_15:5604686-5605946(-) (9)	POPTR_0012s03790 (6)	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0004371|glycerone kinase activity	NA
PtpAffx.16386.1.A1_a_at	A	A1TS	POPTR_0005s09760	POPTR_0005s09760 (11)	scaffold_5:6844921-6845043(+) (11)	NA	Q9LSX8	SKP1-like protein 10	AT3G21860.1	SKP1-like 10 	LOC_Os07g43270.1	"SKP1-like protein 1B, putative"	Medtr4g033200.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.16386.1.A1_at	A	A1TS	POPTR_0005s09760	POPTR_0005s09760 (11)	scaffold_5:6844542-6844872(+) (11)	NA	Q9LSX8	SKP1-like protein 10	AT3G21860.1	SKP1-like 10 	LOC_Os07g43270.1	"SKP1-like protein 1B, putative"	Medtr4g033200.1	SKP1 component 	GO:0006511|ubiquitin-dependent protein catabolic process	NA	NA
PtpAffx.16388.1.S1_at	A	A1MS	POPTR_0005s10680	POPTR_0005s10680 (9)	scaffold_5:7677878-7678425(-) (9)	NA	Q7XA86	Probable S-acyltransferase At3g51390	AT3G51390.1	DHHC-type zinc finger family protein 	LOC_Os12g29560.1	"DHHC zinc finger domain containing protein, expressed"	Medtr5g023180.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.163890.1.S1_at	A	A1TS	POPTR_0003s15060	POPTR_0003s15060 (9)	scaffold_3:14946400-14946548(+) (9)	NA	Q9LY05	Ethylene-responsive transcription factor ERF106	AT5G07580.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g46240.1	"AP2 domain containing protein, expressed"	Medtr1g112020.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
PtpAffx.163926.1.S1_at	A	A1TS	POPTR_0010s22660	POPTR_0010s22660 (11)	scaffold_10:19483682-19484995(+) (11)	NA	NA	NA	AT4G25030.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g43060.1	expressed protein	Medtr1g121550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163938.1.S1_s_at	A	A1TS	POPTR_0004s03410	POPTR_0004s03410 (11)	scaffold_4:2350593-2350670(-) (11)	NA	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G05020.1	NAD(P)H dehydrogenase B2 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.163943.1.A1_at	A	A1TS	POPTR_0010s12060	POPTR_0010s12060 (11)	scaffold_10:12151753-12152458(-) (11)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16395.1.S1_a_at	A	A1TS	POPTR_0018s03570	POPTR_0018s03570 (11)	scaffold_18:3092898-3093380(-) (11)	NA	NA	NA	AT5G10695.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g44980.1	conserved hypothetical protein	Medtr3g133270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163955.1.S1_s_at	A	A1TS	POPTR_0002s08170	POPTR_0002s08170 (11)	scaffold_2:5655932-5656998(-) (11)	NA	Q9D0F6	Replication factor C subunit 5	AT1G77470.1	replication factor C subunit 3 	LOC_Os02g53500.2	"RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed"	Medtr3g100750.1	"AAA ATPase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0005524|ATP binding||GO:0003689|DNA clamp loader activity	GO:0005663|DNA replication factor C complex
PtpAffx.163957.1.S1_s_at	A	A1TS	POPTR_0017s05500	POPTR_0017s05500 (11)	scaffold_17:4353498-4354289(+) (11)	NA	Q8LDW8	"Probable hydroxyacylglutathione hydrolase 2, chloroplast"	AT1G06130.2	glyoxalase 2-4 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163963.1.S1_s_at	A	A1TS	POPTR_0001s16790	POPTR_0001s16790 (11)	scaffold_1:13587612-13587740(+) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
PtpAffx.163969.1.S1_s_at	A	A1TS	POPTR_0014s14690	POPTR_0014s14690 (11)	scaffold_14:10764948-10766013(-) (11)	NA	Q38931	70 kDa peptidyl-prolyl isomerase	AT5G48570.1	FKBP-type peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os04g28420.2	"peptidyl-prolyl isomerase, putative, expressed"	Medtr8g012700.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
PtpAffx.163978.1.S1_at	A	A1TS	POPTR_0004s10250	POPTR_0004s10250 (11)	scaffold_4:8800649-8801156(+) (11)	NA	O80931	Transcription factor AS1	AT2G37630.1	myb-like HTH transcriptional regulator family protein 	LOC_Os12g38400.2	"MYB family transcription factor, putative, expressed"	Medtr7g068530.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163979.1.S1_s_at	A	A1TS	POPTR_0008s15880	POPTR_0008s15880 (11)	scaffold_8:10600254-10600630(+) (11)	POPTR_0010s09140 (6)	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
PtpAffx.163982.1.S1_at	A	A1TS	POPTR_0001s34830	POPTR_0001s34830 (10)	scaffold_1:33053170-33057630(-) (10)	NA	NA	NA	AT3G28370.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51430.1); Has 6174 Blast hits to 4953 proteins in 685 species: Archae - 195; Bacteria - 792; Metazoa - 2688; Fungi - 653; Plants - 470; Viruses - 15; Other Eukaryotes - 1361 (source: NCBI BLink). 	LOC_Os06g13580.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.163983.1.S1_at	A	A1TS	POPTR_0014s14220	POPTR_0014s14220 (11)	scaffold_14:10411486-10412211(+) (11)	NA	Q8N5U6	RING finger protein 10	AT3G26730.1	RING/U-box superfamily protein 	LOC_Os02g31150.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g097010.1	"Zinc finger, RING-type; Site-specific recombinase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164008.1.S1_at	A	A1TS	POPTR_0012s06430	POPTR_0012s06430 (10)	scaffold_12:6834707-6835019(-) (10)	NA	Q9SZF7	Protein SHORT-ROOT	AT4G37650.1	GRAS family transcription factor 	LOC_Os07g39820.1	"SHR, putative, expressed"	Medtr5g015580.1	GRAS transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164015.1.S1_at	A	A1TS	POPTR_0007s12190	POPTR_0007s12190 (11)	scaffold_7:12531718-12533039(+) (11)	NA	Q8W4F0	Protein DA1-related 1	AT4G36860.1	LIM domain-containing protein 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
PtpAffx.16402.2.S1_a_at	A	A1TS	POPTR_0004s09280	POPTR_0004s09280 (11)	scaffold_4:7828621-7829046(+) (11)	NA	Q9ZWR8	Anthocyanin 5-aromatic acyltransferase	AT5G39080.1	HXXXD-type acyl-transferase family protein 	LOC_Os07g23150.1	"transferase family protein, putative, expressed"	Medtr7g073510.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
PtpAffx.164020.1.S1_at	A	A1TS	POPTR_0006s06920	POPTR_0006s06920 (11)	scaffold_6:5003580-5004251(+) (11)	NA	NA	NA	NA	NA	LOC_Os05g33290.1	"uncharacterized conserved membrane protein specific to cyanobacteria, putative, expressed"	Medtr8g120260.1	"Uncharacterized conserved membrane protein specific to cyanobacteria, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164036.1.S1_at	A	A1TS	POPTR_0016s11950	POPTR_0016s11950 (9)	scaffold_16:11127115-11127616(+) (9)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr4g012530.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.164036.2.S1_at	A	A1TS	POPTR_0006s09830	POPTR_0006s09830 (10)	scaffold_6:7231001-7231534(+) (10)//scaffold_958:237-7814(+) (9)	NA	O80434	Laccase-4	AT2G38080.1	Laccase/Diphenol oxidase family protein 	LOC_Os11g48060.1	"laccase-22 precursor, putative, expressed"	Medtr4g012530.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
PtpAffx.164039.1.S1_at	A	A1TS	POPTR_0009s08010	POPTR_0009s08010 (9)	scaffold_9:7426531-7427388(-) (9)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT5G58490.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g60380.1	"cinnamoyl CoA reductase, putative, expressed"	Medtr5g080900.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
PtpAffx.164052.1.S1_at	A	A1TS	POPTR_0010s16180	POPTR_0010s16180 (9)	scaffold_10:15180781-15181340(+) (9)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G48100.1	Pectin lyase-like superfamily protein 	LOC_Os05g20020.1	"polygalacturonase, putative, expressed"	Medtr2g037040.1	"Aminoacyl-tRNA synthetase, class I "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
PtpAffx.164055.1.S1_at	A	A1TS	POPTR_0005s10260	POPTR_0005s10260 (11)	scaffold_5:7342821-7343186(-) (11)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.164055.2.S1_s_at	A	A1TS	POPTR_0007s08590	POPTR_0007s08590 (11)	scaffold_7:7444611-7445031(-) (11)	NA	Q8LFC0	"Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial"	AT4G35260.1	isocitrate dehydrogenase 1 	LOC_Os02g38200.1	"dehydrogenase, putative, expressed"	Medtr8g088400.1	Isocitrate/isopropylmalate dehydrogenase 	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
PtpAffx.164065.1.S1_s_at	A	A1TS	POPTR_0008s20230	POPTR_0008s20230 (11)	scaffold_8:14008240-14010858(-) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G18900.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os05g41010.1	"oxidoreductase, putative, expressed"	Medtr2g025880.2	Metridin-like ShK toxin; 2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
PtpAffx.164072.1.S1_at	A	A1TS	POPTR_0004s23170	POPTR_0004s23170 (11)	scaffold_4:21954794-21955150(+) (11)	NA	Q94CC0	Uncharacterized protein At5g49945	AT4G24330.1	Protein of unknown function (DUF1682) 	LOC_Os05g35710.2	"coiled-coil domain-containing protein 47 precursor, putative, expressed"	Medtr2g005700.1	Protein of unknown function DUF1682 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164076.1.S1_at	A	A1TS	POPTR_0002s24110	POPTR_0002s24110 (11)	scaffold_2:21551226-21552834(+) (11)	NA	Q9R0X4	"Acyl-coenzyme A thioesterase 9, mitochondrial"	AT5G48370.2	Thioesterase/thiol ester dehydrase-isomerase superfamily protein 	LOC_Os09g34190.1	"acyl-coenzyme A thioesterase 10, mitochondrial precursor, putative, expressed"	Medtr7g092460.1	"Acyl-coenzyme A thioesterase 9, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164082.1.S1_at	A	A1TS	POPTR_0003s15660	POPTR_0003s15660 (11)	scaffold_3:15419448-15421552(-) (11)	NA	Q8DHG3	Tryptophanyl-tRNA synthetase	AT2G25840.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g54020.1	"tRNA synthetase, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
PtpAffx.16409.1.A1_at	A	A1TS	POPTR_0001s24150	POPTR_0001s24150 (10)	scaffold_1:23515646-23516092(-) (10)	NA	Q55DM5	Adenosine 3'-phospho 5'-phosphosulfate transporter 1	AT5G59740.1	UDP-N-acetylglucosamine (UAA) transporter family 	LOC_Os05g02490.1	"transporter family protein, putative, expressed"	Medtr2g114330.1	UAA transporter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.164104.1.S1_s_at	A	A1TS	POPTR_0010s18030	POPTR_0010s18030 (11)	scaffold_10:16424165-16426152(-) (11)	NA	Q9SA32	Putative cyclin-B3-1	AT1G16330.1	cyclin b3;1 	LOC_Os01g59120.1	"cyclin, putative, expressed"	Medtr7g106110.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
PtpAffx.16419.1.S1_at	A	A1TS	POPTR_0006s15100	POPTR_0006s15100 (9)	scaffold_6:12561184-12561568(+) (9)	NA	Q9ZUP2	"DNA repair protein recA homolog 3, mitochondrial"	AT2G19490.1	recA DNA recombination family protein 	LOC_Os01g67510.1	"recA protein, putative, expressed"	Medtr2g046210.1	RecA bacterial DNA recombination protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16420.1.A1_at	A	A1MS	POPTR_0014s02250	POPTR_0014s02250 (10)	scaffold_14:1909544-1909948(+) (10)	NA	Q6BT38	Chromatin modification-related protein EAF3	AT4G37280.1	MRG family protein 	LOC_Os11g34300.2	"chromatin modification-related protein EAF3, putative, expressed"	NA	NA	NA	NA	GO:0005634|nucleus
PtpAffx.16423.1.S1_at	A	A1TS	POPTR_0012s03180	POPTR_0012s03180 (11)	scaffold_12:2521706-2522231(-) (11)	NA	Q2EF88	Metal-nicotianamine transporter YSL3	AT5G53550.2	YELLOW STRIPE like 3 	LOC_Os04g45860.1	"transposon protein, putative, unclassified, expressed"	Medtr3g123340.1	Oligopeptide transporter OPT superfamily 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16429.1.S1_at	A	A1TS	POPTR_0015s07840	POPTR_0015s07840 (10)	scaffold_15:9132562-9133090(+) (10)	NA	Q9SSG3	HIPL1 protein	AT1G74790.1	catalytics 	LOC_Os03g48540.1	expressed protein	AC233677_10.1	"Soluble quinoprotein glucose dehydrogenase; TolB, C-terminal AC233677.2 54718-59391 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16431.1.S1_at	A	A1TS	POPTR_0001s36310	POPTR_0001s36310 (11)	scaffold_1:34858568-34858769(+) (11)	NA	NA	NA	AT5G14290.1	Mitochondrial ribosomal protein L37 	LOC_Os12g14080.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16432.1.S1_a_at	A	A1TS	POPTR_0003s17260	POPTR_0003s17260 (11)	scaffold_3:16672559-16674008(-) (11)	NA	Q5ZKY4	Inhibitor of growth protein 4	AT3G24010.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os03g04980.1	"PHD-finger domain containing protein, putative, expressed"	Medtr7g100390.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16432.1.S1_at	A	A1TS	POPTR_0003s17260	POPTR_0003s17260 (11)	scaffold_3:16671254-16672511(-) (11)	NA	Q5ZKY4	Inhibitor of growth protein 4	AT3G24010.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os03g04980.1	"PHD-finger domain containing protein, putative, expressed"	Medtr7g100390.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16433.1.S1_at	A	A1TA	POPTR_0009s06570	POPTR_0009s06570 (11)	scaffold_9:6323657-6323892(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16440.1.A1_s_at	A	A1TS	POPTR_0018s01880	POPTR_0018s01880 (11)	scaffold_18:1696721-1697160(-) (11)	POPTR_0006s27210 (6)	NA	NA	AT4G32160.1	Phox (PX) domain-containing protein 	LOC_Os06g43560.1	"phox domain-containing protein, putative, expressed"	Medtr3g137530.1	Phox-like 	GO:0007154|cell communication||GO:0023052|signaling	GO:0035091|phosphoinositide binding||GO:0005515|protein binding	NA
PtpAffx.16450.1.S1_a_at	A	A1TS	POPTR_0006s10280	POPTR_0006s10280 (9)	scaffold_6:7687913-7688208(+) (9)	NA	NA	NA	AT5G01350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g42910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16450.2.S1_at	A	A1MS	POPTR_0016s12630	POPTR_0016s12630 (9)	scaffold_16:12019321-12019437(-) (9)	NA	NA	NA	AT5G01350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g42910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16450.4.S1_at	A	A1TS	POPTR_0016s12630	POPTR_0016s12630 (11)	scaffold_16:12018770-12019001(-) (11)	NA	NA	NA	AT5G01350.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g42910.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16457.1.S1_a_at	A	A2TS	POPTR_0001s14740	POPTR_0001s14740 (11)//POPTR_0003s17870 (11)	scaffold_1:11614259-11615403(+) (11)//scaffold_3:17122440-17123678(+) (11)	NA	Q92564	DCN1-like protein 4	AT1G15860.2	Domain of unknown function (DUF298) 	LOC_Os08g34070.1	"DCN1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16469.1.A1_at	A	A1TS	POPTR_0002s12590	POPTR_0002s12590 (10)	scaffold_2:9385837-9386434(+) (10)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT5G42940.1	RING/U-box superfamily protein 	LOC_Os04g55510.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g024190.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16474.1.S1_at	A	A1TS	POPTR_0004s00660	POPTR_0004s00660 (11)	scaffold_4:265266-265562(+) (11)	NA	B6IRQ7	50S ribosomal protein L4	AT2G20060.1	Ribosomal protein L4/L1 family 	LOC_Os11g37510.1	"ribosomal protein L4, putative, expressed"	Medtr3g136260.1	Ribosomal protein L4/L1e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
PtpAffx.16497.1.A1_at	A	A1TS	POPTR_0009s03990	POPTR_0009s03990 (11)	scaffold_9:4565869-4566256(+) (11)	NA	Q9ZWJ9	Two-component response regulator ARR2	AT3G46640.2	Homeodomain-like superfamily protein 	LOC_Os01g74020.1	"MYB family transcription factor, putative, expressed"	Medtr4g084700.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.165.1.S1_at	A	A1TS	POPTR_0006s24870	POPTR_0006s24870 (11)	scaffold_6:23386263-23386808(-) (11)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT5G10770.1	Eukaryotic aspartyl protease family protein 	LOC_Os09g30414.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr2g033710.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
PtpAffx.16516.1.S1_a_at	A	A1TS	POPTR_0006s07730	POPTR_0006s07730 (11)	scaffold_6:56360