ProbeSet	v2Grade	v2Type	v2Best Gene Model	v2All Gene Models	v2Position	v2Marginal Match	v2UniProt	v2UniProtName	v2TAIR10	v2AtName	v2Rice	v2OsName	v2Medicago	v2MtName	v2Biological_process	v2Molecular_function	v2Cellular_component
Ptp.1.1.S1_at	A	A1TS	POPTR_0001s23140	POPTR_0001s23140 (11)	scaffold_1:22404529-22405642(-) (11)	NA	O23715	Proteasome subunit alpha type-3	AT2G27020.1	20S proteasome alpha subunit G1 	LOC_Os01g59600.2	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1.1.S1_s_at	A	A1TS	POPTR_0001s23140	POPTR_0001s23140 (11)	scaffold_1:22404015-22404170(-) (11)	NA	O23715	Proteasome subunit alpha type-3	AT2G27020.1	20S proteasome alpha subunit G1 	LOC_Os01g59600.2	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1002.1.A1_at	A	A1TS	POPTR_0016s07090	POPTR_0016s07090 (11)	scaffold_16:4937026-4937469(-) (11)	NA	Q6DW74	"Digalactosyldiacylglycerol synthase 1, chloroplastic"	AT3G11670.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os04g34000.1	"digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed"	Medtr7g084010.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.1006.1.A1_at	A	A1TS	POPTR_0015s07760	POPTR_0015s07760 (11)	scaffold_15:9057418-9057881(+) (11)	NA	Q8GYP6	Pentatricopeptide repeat-containing protein At1g18900	AT1G18900.2	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os12g44170.1	"pentatricopeptide, putative, expressed"	Medtr2g022110.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1007.1.S1_at	A	A1TS	POPTR_0018s09980	POPTR_0018s09980 (11)	scaffold_18:11041204-11042069(+) (11)	NA	Q05001	NADPH--cytochrome P450 reductase	AT4G30210.1	P450 reductase 2 	LOC_Os09g38620.1	"NADPH reductase, putative, expressed"	Medtr8g129070.1	"Flavodoxin/nitric oxide synthase; Sulphite reductase [NADPH] flavoprotein, alpha chain "	GO:0055114|oxidation reduction	GO:0010181|FMN binding||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.1008.1.A1_at	A	A1TS	POPTR_0003s14300	POPTR_0003s14300 (10)	scaffold_3:14408370-14408911(+) (10)	NA	Q84TH9	Protein NLP7	AT4G24020.1	NIN like protein 7 	LOC_Os01g13540.1	"NIN, putative, expressed"	Medtr1g126970.1	Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.101.1.S1_at	A	A1TS	POPTR_0001s44000	POPTR_0001s44000 (11)	scaffold_1:44477513-44478489(+) (11)	NA	NA	NA	AT5G54530.1	"Protein of unknown function, DUF538 "	LOC_Os07g36410.1	expressed protein	Medtr2g011040.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1010.1.A1_s_at	A	A1TS	POPTR_0001s05500	POPTR_0001s05500 (11)	scaffold_1:4219876-4220259(-) (11)	NA	Q9C690	Transcription factor bHLH122	AT1G51140.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	NA	NA	Medtr2g117830.2	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1011.1.S1_at	A	A1TS	POPTR_0016s06810	POPTR_0016s06810 (11)	scaffold_16:4603659-4603713(-) (11)	NA	Q54SW1	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179	AT3G11780.1	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1011.1.S1_s_at	A	A1TS	POPTR_0016s06810	POPTR_0016s06810 (11)	scaffold_16:4603934-4605279(-) (11)	NA	Q54SW1	Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179	AT3G11780.1	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein 	LOC_Os03g57420.1	"ML domain protein, putative, expressed"	Medtr4g066970.1	E1 protein and Def2/Der2 allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1012.1.S1_s_at	A	A1TS	POPTR_0015s11690	POPTR_0015s11690 (11)	scaffold_15:12253219-12253329(-) (11)	NA	Q00004	Signal recognition particle 68 kDa protein	AT5G61970.1	signal recognition particle-related / SRP-related 	LOC_Os08g23360.1	"signal recognition particle 68 kDa protein, putative, expressed"	Medtr4g152260.1	"Signal recognition particle 68 kDa protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1013.1.S1_at	A	A1MS	POPTR_0008s04730	POPTR_0008s04730 (9)	scaffold_8:2722003-2722439(+) (9)	NA	NA	NA	AT5G13590.1	unknown protein; Has 150 Blast hits to 121 proteins in 42 species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5; Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). 	NA	NA	Medtr1g146260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1020.1.S1_at	A	A1TS	POPTR_0013s07300	POPTR_0013s07300 (10)	scaffold_13:6065734-6065767(-) (10)	NA	NA	NA	AT2G44820.1	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g12480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1020.1.S1_s_at	A	A1TS	POPTR_0013s07300	POPTR_0013s07300 (9)	scaffold_13:6066064-6067746(-) (10)	NA	NA	NA	AT2G44820.1	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g12480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1022.1.S1_at	A	A1TS	POPTR_0030s00390	POPTR_0030s00390 (11)	scaffold_30:142953-144418(-) (11)	NA	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os12g42980.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.1022.1.S1_x_at	A	A1TS	POPTR_0030s00390	POPTR_0030s00390 (11)	scaffold_30:142954-144418(-) (11)	NA	Q43317	Cysteine synthase	AT4G14880.4	O-acetylserine (thiol) lyase (OAS-TL) isoform A1 	LOC_Os12g42980.1	"cysteine synthase, putative, expressed"	Medtr1g096590.1	"Pyridoxal-5-phosphate-dependent enzyme, beta subunit "	GO:0008152|metabolic process	GO:0003824|catalytic activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.1023.1.A1_at	A	A1TS	POPTR_0006s11660	POPTR_0006s11660 (11)	scaffold_6:8882578-8882778(-) (11)	NA	NA	NA	AT2G36480.1	ENTH/VHS family protein 	LOC_Os09g39270.1	"ZOS9-20 - C2H2 zinc finger protein, expressed"	Medtr7g126610.1	"Regulation of nuclear pre-mRNA protein; Zinc finger, C2H2-type; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1023.1.A1_s_at	A	A1TS	POPTR_0006s11660	POPTR_0006s11660 (11)	scaffold_6:8882822-8883932(-) (11)	NA	NA	NA	AT2G36480.1	ENTH/VHS family protein 	LOC_Os09g39270.1	"ZOS9-20 - C2H2 zinc finger protein, expressed"	Medtr7g126610.1	"Regulation of nuclear pre-mRNA protein; Zinc finger, C2H2-type; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1025.1.A1_at	A	A1TS	POPTR_0008s09230	POPTR_0008s09230 (11)	scaffold_8:5725842-5726037(+) (11)	NA	NA	NA	AT1G13940.1	Plant protein of unknown function (DUF863) 	LOC_Os12g38870.2	expressed protein	Medtr5g046300.1	"Protein of unknown function DUF863, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1027.1.A1_at	A	A1TA	POPTR_0008s01490	POPTR_0008s01490 (10)	scaffold_8:725370-725547(-) (10)	NA	Q8LFN2	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770	AT3G03770.2	Leucine-rich repeat protein kinase family protein 	LOC_Os07g07230.2	"protein kinase, putative, expressed"	Medtr7g103210.1	Protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.1028.1.S1_at	A	A1TS	POPTR_0013s02750	POPTR_0013s02750 (10)	scaffold_13:1654002-1654047(+) (10)	NA	NA	NA	AT5G27390.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os05g33300.1	"tat pathway signal sequence family protein, expressed"	Medtr1g099010.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.103.1.S1_s_at	A	A1TS	POPTR_0005s16680	POPTR_0005s16680 (11)	scaffold_5:13680495-13681063(+) (11)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT1G36070.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g26870.1	"WD-40 repeat family protein, putative, expressed"	CU651566_11.1	"Uncharacterized WD repeat-containing protein C2A9.03, related CU651566.9 58826-64265 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1030.1.A1_at	A	A1TS	POPTR_0004s15750	POPTR_0004s15750 (11)	scaffold_4:16309836-16310728(-) (11)	NA	Q8H124	"Uncharacterized protein At2g34460, chloroplastic"	AT3G18890.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os10g01044.1	"isoflavone reductase, putative, expressed"	Medtr8g121780.1	NAD-dependent epimerase/dehydratase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1030.2.A1_at	A	A1TS	POPTR_0015s13490	POPTR_0015s13490 (9)	scaffold_15:13415933-13416075(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1034.1.A1_at	A	A1TS	POPTR_0006s14570	POPTR_0006s14570 (9)	scaffold_13:4524750-4524975(-) (9)//scaffold_6:11899226-11899443(-) (11)	NA	Q6PD62	RNA polymerase-associated protein CTR9 homolog	AT2G06210.1	binding 	LOC_Os07g29360.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1035.1.S1_at	A	A1TA	POPTR_0009s07210	POPTR_0009s07210 (10)	scaffold_9:6794118-6794555(-) (10)	NA	Q9Y4W2	Protein LAS1 homolog	AT5G12220.1	las1-like family protein 	LOC_Os12g08800.1	"las1-like family protein, putative, expressed"	Medtr5g096290.1	Las1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1037.1.S1_s_at	A	A1TS	POPTR_0013s12390	POPTR_0013s12390 (11)	scaffold_13:13028959-13029486(-) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.1037.2.S1_a_at	A	A1TS	POPTR_0013s12390	POPTR_0013s12390 (11)	scaffold_13:13030385-13030712(-) (11)	NA	Q9LZ72	3-ketoacyl-CoA synthase 21	AT5G04530.1	3-ketoacyl-CoA synthase 19 	LOC_Os10g33370.1	"3-ketoacyl-CoA synthase precursor, putative, expressed"	Medtr4g079280.1	Very-long-chain 3-ketoacyl-CoA synthase; 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.1038.1.A1_at	A	A1TS	POPTR_0002s15880	POPTR_0002s15880 (9)	scaffold_2:11829163-11829663(-) (9)	NA	NA	NA	AT1G01770.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1446 (InterPro:IPR010839); Has 1597 Blast hits to 1509 proteins in 306 species: Archae - 4; Bacteria - 843; Metazoa - 22; Fungi - 131; Plants - 31; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink). 	LOC_Os07g27350.1	"atuA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1039.1.A1_at	A	A1MS	POPTR_0005s22100	POPTR_0005s22100 (11)	scaffold_5:21085121-21086977(-) (11)	NA	O50044	2-dehydro-3-deoxyphosphooctonate aldolase	AT1G79500.4	Aldolase-type TIM barrel family protein 	LOC_Os12g10784.2	"2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed"	Medtr7g092790.1	2-dehydro-3-deoxyphosphooctonate aldolase 	GO:0009058|biosynthetic process	NA	NA
Ptp.1041.1.S1_at	A	A1TS	POPTR_0001s11420	POPTR_0001s11420 (9)	scaffold_1:8894370-8895528(+) (9)	NA	NA	NA	AT1G64680.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G03055.1); Has 146 Blast hits to 146 proteins in 26 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). 	LOC_Os08g02210.2	expressed protein	Medtr3g109380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1042.1.A1_at	A	A1TS	POPTR_0003s18520	POPTR_0003s18520 (11)	scaffold_3:17571799-17573913(-) (11)	NA	NA	NA	AT1G79660.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g16559.1	expressed protein	Medtr2g010950.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1043.1.A1_at	A	A1TS	POPTR_0003s19790	POPTR_0003s19790 (11)	scaffold_3:18423226-18423989(-) (11)	NA	Q8L7A4	Probable ADP-ribosylation factor GTPase-activating protein AGD11	AT3G07940.1	Calcium-dependent ARF-type GTPase activating protein family 	LOC_Os01g72230.1	"stromal membrane-associated protein, putative, expressed"	Medtr3g020140.1	C2; Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.1045.1.A1_at	A	A1TS	POPTR_0008s14230	POPTR_0008s14230 (11)	scaffold_8:9419911-9422021(+) (11)	NA	Q5REY7	UBX domain-containing protein 7	AT1G14570.1	UBX domain-containing protein 	LOC_Os04g57520.1	"UBX domain-containing protein, putative, expressed"	AC229689_1.1	UBX; UAS; Thioredoxin-like fold AC229689.5 4995-12311 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1046.1.A1_at	A	A1TS	POPTR_0011s05510	POPTR_0011s05510 (9)	scaffold_11:5468809-5469077(-) (9)	NA	Q2T9J0	Peroxisomal leader peptide-processing protease	AT1G28320.1	protease-related 	LOC_Os05g41810.1	"OsDegp8 - Putative Deg protease homologue, expressed"	Medtr2g017690.1	"Peptidase, trypsin-like serine and cysteine proteases "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1049.1.S1_at	A	A1TS	POPTR_0001s46750	POPTR_0001s46750 (11)	scaffold_1:47154847-47155352(+) (11)	NA	NA	NA	AT3G26710.1	cofactor assembly of complex C 	LOC_Os11g32320.1	"CCB1, putative, expressed"	Medtr7g097210.1	"CPLD51 protein required for cyt b6 assembly, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.105.1.S1_s_at	A	A1TS	POPTR_0005s23220	POPTR_0005s23220 (11)	scaffold_5:22053706-22054256(-) (11)	NA	Q99633	Pre-mRNA-splicing factor 18	AT1G03140.1	splicing factor Prp18 family protein 	LOC_Os07g38420.1	"pre-mRNA-splicing factor, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0008380|RNA splicing	NA	GO:0005681|spliceosomal complex
Ptp.1052.1.A1_at	A	A1TS	POPTR_0006s25960	POPTR_0006s25960 (9)	scaffold_6:24259556-24259943(-) (9)	NA	O49343	Pentatricopeptide repeat-containing protein At2g30780	AT2G30780.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g06370.2	"PPR repeat domain containing protein, putative, expressed"	Medtr1g009460.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1058.1.A1_s_at	A	A1TS	POPTR_0011s13910	POPTR_0011s13910 (11)	scaffold_11:16530695-16531463(-) (11)	NA	Q3U829	Uncharacterized protein KIAA0415	AT3G15160.1	unknown protein; Has 266 Blast hits to 264 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 0; Plants - 199; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). 	LOC_Os04g53530.1	expressed protein	Medtr4g110580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1062.1.A1_at	A	A1TS	POPTR_0009s04250	POPTR_0009s04250 (11)	scaffold_9:4714775-4716075(-) (11)	NA	O04856	Serine/threonine-protein phosphatase PP1 isozyme 1	AT5G59160.3	type one serine/threonine protein phosphatase 2 	LOC_Os03g16110.3	"Ser/Thr protein phosphatase family protein, putative, expressed"	Medtr1g093510.1	Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase 	NA	GO:0016787|hydrolase activity	NA
Ptp.1063.2.A1_at	A	A1TS	POPTR_0016s04070	POPTR_0016s04070 (9)	scaffold_16:2322839-2325248(-) (9)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.1063.2.A1_s_at	A	A1TS	POPTR_0016s04070	POPTR_0016s04070 (11)	scaffold_16:2325039-2325181(-) (11)	NA	Q9LD90	H/ACA ribonucleoprotein complex subunit 4	AT3G57150.1	homologue of NAP57 	LOC_Os03g25450.1	"h/ACA ribonucleoprotein complex subunit 4, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.1064.1.A1_at	A	A1TS	POPTR_0010s05180	POPTR_0010s05180 (11)	scaffold_10:6622421-6622743(-) (11)	NA	Q949Z1	Polygalacturonase At1g48100	AT1G60590.1	Pectin lyase-like superfamily protein 	LOC_Os01g44970.1	"polygalacturonase, putative, expressed"	Medtr5g035390.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.1065.1.S1_at	A	A1TS	POPTR_0014s00330	POPTR_0014s00330 (11)	scaffold_14:138746-139518(+) (11)	NA	NA	NA	AT3G13062.2	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os02g26860.1	"START domain containing protein, putative, expressed"	Medtr4g163310.1	Lipid-binding START 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1066.1.A1_s_at	A	A1TS	POPTR_0001s46420	POPTR_0001s46420 (11)	scaffold_1:46809187-46809392(-) (11)	NA	Q9SA76	"Pentatricopeptide repeat-containing protein At1g30610, chloroplastic"	AT1G30610.1	pentatricopeptide (PPR) repeat-containing protein 	LOC_Os01g48380.1	"PPR repeat domain containing protein, putative, expressed"	Medtr8g101620.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1067.1.S1_s_at	A	A1TS	POPTR_0006s24460	POPTR_0006s24460 (11)	scaffold_6:23065235-23065669(+) (11)	NA	A4UVI1	Fatty acid desaturase 1	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	Medtr1g020170.1	Fatty acid desaturase/sphingolipid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0016491|oxidoreductase activity	NA
Ptp.107.1.S1_at	A	A1TS	POPTR_0009s10310	POPTR_0009s10310 (11)	scaffold_9:8874910-8875282(-) (11)	NA	Q9FXA4	U-box domain-containing protein 26	AT1G49780.1	plant U-box 26 	LOC_Os02g34410.1	"U-box domain-containing protein, putative, expressed"	Medtr4g130110.1	U box; Armadillo-like helical 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.1072.1.A1_s_at	A	A1TS	POPTR_0010s18390	POPTR_0010s18390 (11)	scaffold_10:16640425-16641854(+) (11)	NA	Q941Q3	Zinc finger CCCH domain-containing protein 37	AT3G12680.1	floral homeotic protein (HUA1) 	LOC_Os01g42970.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g089530.1	"Zinc finger, CCCH-type; Sugar transporter superfamily "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.1073.1.A1_at	A	A1TS	POPTR_0010s24160	POPTR_0010s24160 (10)	scaffold_10:20507985-20508363(-) (10)	NA	Q8W571	RING-H2 finger protein ATL32	AT4G40070.1	RING/U-box superfamily protein 	LOC_Os02g45390.1	"RING-H2 finger protein, putative, expressed"	Medtr7g083870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1074.1.S1_at	A	A1TS	POPTR_0001s17220	POPTR_0001s17220 (10)	scaffold_1:14063757-14063973(-) (10)	NA	O14111	C2 domain-containing protein C31G5.15	AT4G25970.1	phosphatidylserine decarboxylase 3 	LOC_Os01g72940.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr2g008340.1	C2; Calcium-binding EF-hand; Phosphatidylserine decarboxylase 	GO:0008654|phospholipid biosynthetic process	GO:0004609|phosphatidylserine decarboxylase activity	NA
Ptp.1074.1.S1_s_at	A	A1TS	POPTR_0001s17220	POPTR_0001s17220 (10)	scaffold_1:14062478-14063740(-) (10)	NA	O14111	C2 domain-containing protein C31G5.15	AT4G25970.1	phosphatidylserine decarboxylase 3 	LOC_Os01g72940.1	"phosphatidylserine decarboxylase, putative, expressed"	Medtr2g008340.1	C2; Calcium-binding EF-hand; Phosphatidylserine decarboxylase 	GO:0008654|phospholipid biosynthetic process	GO:0004609|phosphatidylserine decarboxylase activity	NA
Ptp.1075.1.A1_a_at	A	A1TS	POPTR_0014s15300	POPTR_0014s15300 (11)	scaffold_14:11370877-11371118(-) (11)	NA	NA	NA	AT2G32500.1	Stress responsive alpha-beta barrel domain protein 	LOC_Os03g02020.2	"stress responsive A/B Barrel domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1077.1.A1_at	A	A1TS	POPTR_0012s05990	POPTR_0012s05990 (9)	scaffold_12:6037126-6037284(-) (9)	NA	P02723	"ADP,ATP carrier protein"	AT5G17400.1	endoplasmic reticulum-adenine nucleotide transporter 1 	LOC_Os11g43960.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g154910.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1078.1.S1_at	A	A1TS	POPTR_0004s04000	POPTR_0004s04000 (9)	scaffold_4:2829009-2829823(-) (9)	NA	Q65Z40	Wings apart-like protein homolog	AT1G11060.1	WAPL (Wings apart-like protein regulation of heterochromatin) protein 	LOC_Os10g35380.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1079.1.S1_at	A	A1TS	POPTR_0016s03560	POPTR_0016s03560 (9)	scaffold_16:1906987-1908468(-) (9)	NA	Q5YLB4	"DNA gyrase subunit B, chloroplastic/mitochondrial"	AT5G04130.1	DNA GYRASE B2 	LOC_Os01g16290.1	"DNA gyrase subunit B, chloroplast/mitochondrial precursor, putative, expressed"	Medtr7g106810.1	DNA gyrase B; ; ; 	GO:0071103|DNA conformation change||GO:0044260|cellular macromolecule metabolic process||GO:0006265|DNA topological change	GO:0003918|DNA topoisomerase (ATP-hydrolyzing) activity||GO:0005524|ATP binding	GO:0005694|chromosome
Ptp.1080.1.S1_s_at	A	A1TS	POPTR_0010s13990	POPTR_0010s13990 (11)	scaffold_10:13700265-13700460(+) (11)	NA	Q84V83	Leucoanthocyanidin reductase	AT1G75290.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g15360.1	nmrA-like family domain containing protein	Medtr1g118020.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.1082.1.A1_a_at	A	A1TS	POPTR_0016s00310	POPTR_0016s00310 (11)	scaffold_16:46220-46289(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1082.1.A1_at	A	A1TS	POPTR_0016s00310	POPTR_0016s00310 (11)	scaffold_16:46118-46588(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT2G01060.1	myb-like HTH transcriptional regulator family protein 	LOC_Os09g12770.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033440.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1083.1.S1_at	A	A1TS	POPTR_0010s07920	POPTR_0010s07920 (11)	scaffold_10:8887625-8887666(+) (11)	NA	O22795	"50S ribosomal protein L28, chloroplastic"	AT2G33450.1	Ribosomal L28 family 	LOC_Os05g01110.1	"ribosomal protein L28 protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1085.1.A1_s_at	A	A1TS	POPTR_0005s27170	POPTR_0005s27170 (11)	scaffold_5:24949213-24949874(-) (11)	NA	Q2KIG3	Carboxypeptidase B2	AT5G42320.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os02g02710.1	"zinc carboxypeptidase family protein, putative, expressed"	NA	NA	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004181|metallocarboxypeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.1086.1.A1_at	A	A1TS	POPTR_0007s13760	POPTR_0007s13760 (11)	scaffold_7:13803207-13803623(-) (11)	NA	Q9SD34	Zinc finger CCCH domain-containing protein 44	AT2G16485.1	nucleic acid binding;zinc ion binding;DNA binding 	LOC_Os09g36090.1	"plus-3 domain containing protein, expressed"	Medtr5g021420.1	"SWIB/MDM2; Plus-3; Zinc finger, FYVE/PHD-type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0016570|histone modification||GO:0006461|protein complex assembly||GO:0006352|transcription initiation	GO:0003677|DNA binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.1087.1.A1_at	A	A2TS	POPTR_0012s09300	POPTR_0012s09300 (11)//POPTR_0427s00200 (10)	scaffold_12:10332220-10333877(-) (11)//scaffold_427:9940-11597(-) (10)	NA	NA	NA	AT5G63160.1	BTB and TAZ domain protein 1 	LOC_Os01g66890.2	"BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed"	Medtr8g109870.1	"Zinc finger, TAZ-type; BTB/POZ; ; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003712|transcription cofactor activity||GO:0004402|histone acetyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.1088.1.S1_s_at	A	A1TS	POPTR_0011s07300	POPTR_0011s07300 (11)	scaffold_11:8058453-8059064(-) (11)	NA	P25776	Oryzain alpha chain	AT1G09850.1	xylem bark cysteine peptidase 3 	LOC_Os04g57440.1	"oryzain beta chain precursor, putative, expressed"	Medtr1g068320.1	"Granulin; Peptidase C1A, papain; "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008234|cysteine-type peptidase activity	NA
Ptp.1089.1.A1_a_at	A	A1TS	POPTR_0012s01130	POPTR_0012s01130 (10)	scaffold_12:783509-783546(-) (11)//scaffold_12:783586-783622(-) (10)	NA	Q43716	Anthocyanidin 3-O-glucosyltransferase	AT2G22590.1	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64540.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr2g008380.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1090.1.S1_at	A	A1TS	POPTR_0004s20790	POPTR_0004s20790 (11)	scaffold_4:20193942-20195154(-) (11)	NA	Q9ZE28	Uncharacterized protein RP120	AT5G22350.1	Protein of unknown function (DUF1022) 	LOC_Os02g33230.1	"nucleoside-diphosphate-sugar epimerase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1094.1.S1_s_at	A	A1TS	POPTR_0014s14720	POPTR_0014s14720 (11)	scaffold_14:10803421-10803742(+) (11)	NA	Q9LYT5	Probable pectinesterase/pectinesterase inhibitor 35	AT3G59010.1	pectin methylesterase 61 	LOC_Os02g54190.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.1097.1.A1_at	A	A1TS	POPTR_0009s05180	POPTR_0009s05180 (11)	scaffold_9:5330039-5330481(-) (11)	NA	Q55CD9	Probable NADH dehydrogenase	AT2G29990.1	alternative NAD(P)H dehydrogenase 2 	LOC_Os01g61410.1	"NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative, expressed"	Medtr5g079530.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.1098.1.A1_at	A	A1TS	POPTR_0008s19960	POPTR_0008s19960 (11)	scaffold_8:13790026-13791358(+) (11)	NA	P55229	"Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic"	AT5G19220.1	ADP glucose pyrophosphorylase large subunit 1 	LOC_Os03g52460.1	"glucose-1-phosphate adenylyltransferase large subunit, putative, expressed"	Medtr8g146330.1	Nucleotidyl transferase 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.1099.1.A1_at	A	A1TS	POPTR_0013s14050	POPTR_0013s14050 (9)	scaffold_13:14383113-14383446(+) (9)	NA	Q6I581	Probable indole-3-acetic acid-amido synthetase GH3.5	AT4G03400.1	Auxin-responsive GH3 family protein 	LOC_Os05g50890.2	"OsGH3.5 - Probable indole-3-acetic acid-amido synthetase, expressed"	Medtr2g096120.1	GH3 auxin-responsive promoter 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.11.1.A1_at	A	A1TS	POPTR_0010s18060	POPTR_0010s18060 (11)	scaffold_10:16440117-16440635(-) (11)	NA	Q9SAK0	"Pentatricopeptide repeat-containing protein At1g79490, mitochondrial"	AT1G79490.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os04g52290.1	"PPR repeat domain containing protein, putative, expressed"	AC234703_7.1	"pentatricopeptide, related AC234703.1 43858-47785 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1102.1.S1_s_at	A	A1TS	POPTR_0012s11900	POPTR_0012s11900 (10)	scaffold_12:12253202-12253235(-) (10)	NA	P93002	Regulatory protein NPR1	AT5G45110.1	NPR1-like protein 3 	LOC_Os01g56200.1	"BTBA2 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed"	Medtr2g034520.1	BTB/POZ; 	NA	GO:0005515|protein binding	NA
Ptp.1105.2.A1_s_at	A	A1TS	POPTR_0013s07230	POPTR_0013s07230 (11)	scaffold_13:5938841-5938883(-) (11)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.1107.1.A1_at	A	A1TS	POPTR_0002s17100	POPTR_0002s17100 (11)	scaffold_2:12880686-12881297(-) (11)	NA	Q9FFQ1	DEAD-box ATP-dependent RNA helicase 31	AT5G63630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g43120.1	"DEAD/DEAH box helicase, putative, expressed"	AC233680_22.1	"Helicase, C-terminal AC233680.1 93008-94365 E EGN_Mt090430 200"	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1108.1.A1_a_at	A	A1TS	POPTR_0015s06480	POPTR_0015s06480 (11)	scaffold_15:7347902-7348355(+) (11)	NA	Q8RWD0	Zinc finger protein CONSTANS-LIKE 16	AT1G25440.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g15330.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr4g158260.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1108.1.A1_s_at	A	A1TS	POPTR_0015s06480	POPTR_0015s06480 (11)	scaffold_15:7347246-7347740(+) (11)	NA	Q8RWD0	Zinc finger protein CONSTANS-LIKE 16	AT1G25440.1	B-box type zinc finger protein with CCT domain 	LOC_Os06g15330.1	"CCT/B-box zinc finger protein, putative, expressed"	Medtr4g158260.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1110.1.A1_s_at	A	A1TS	POPTR_0003s05100	POPTR_0003s05100 (11)	scaffold_3:6321071-6321339(+) (11)	NA	P46607	Homeobox-leucine zipper protein GLABRA 2	AT1G79840.1	HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain 	LOC_Os01g55549.1	"homeobox and START domains containing protein, putative, expressed"	Medtr2g122740.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.1111.1.A1_s_at	A	A1TS	POPTR_0007s13260	POPTR_0007s13260 (9)	scaffold_7:13378069-13378503(-) (9)	NA	Q9AR07	Jasmonate O-methyltransferase	AT1G19640.1	jasmonic acid carboxyl methyltransferase 	LOC_Os11g15130.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr5g020860.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.1114.1.S1_at	A	A1TS	POPTR_0006s06700	POPTR_0006s06700 (9)	scaffold_6:4852266-4853625(+) (9)	NA	Q8GW46	Axial regulator YABBY 5	AT2G26580.2	plant-specific transcription factor YABBY family protein 	LOC_Os03g44710.2	"YABBY domain containing protein, putative, expressed"	Medtr8g120820.1	High mobility group box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1115.1.S1_at	A	A1TS	POPTR_0001s30800	POPTR_0001s30800 (11)	scaffold_1:29259810-29259846(+) (11)	NA	Q94C77	Receptor protein kinase-like protein At4g34220	AT4G34220.1	Leucine-rich repeat protein kinase family protein 	LOC_Os09g02250.1	"transposon protein, putative, unclassified, expressed"	Medtr7g076330.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.112.2.S1_a_at	A	A1TS	POPTR_0010s12320	POPTR_0010s12320 (9)	scaffold_10:12349735-12351095(+) (9)	NA	Q9S7Z8	Auxin efflux carrier component 3	AT1G70940.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.1120.1.S1_at	A	A1TS	POPTR_0004s14890	POPTR_0004s14890 (9)	scaffold_4:15541626-15542470(-) (9)	NA	Q5KMS0	Autophagy-related protein 2	AT3G19190.1	autophagy 2 	LOC_Os06g15700.1	expressed protein	Medtr4g129470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1122.2.S1_at	A	A1TS	POPTR_0010s16010	POPTR_0010s16010 (11)	scaffold_10:15080164-15080349(-) (11)	NA	P29344	"30S ribosomal protein S1, chloroplastic"	AT5G30510.1	ribosomal protein S1 	LOC_Os03g20100.1	"S1 RNA binding domain containing protein, expressed"	Medtr2g037310.1	RNA binding S1 	NA	GO:0003723|RNA binding	NA
Ptp.1127.1.A1_at	A	A1TS	POPTR_0012s03330	POPTR_0012s03330 (11)	scaffold_12:2647223-2647776(+) (11)	NA	Q03091	Extracellular ribonuclease	NA	NA	LOC_Os02g26400.2	"nuclease, EndA/NucM family protein, expressed"	Medtr8g130270.1	Endonuclease I 	NA	GO:0004518|nuclease activity	NA
Ptp.113.1.S1_s_at	A	A1TS	POPTR_0009s13470	POPTR_0009s13470 (11)	scaffold_9:10705820-10706296(-) (11)	NA	Q8L883	Auxin transporter-like protein 5	AT2G21050.1	like AUXIN RESISTANT 2 	LOC_Os03g14080.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g097960.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1133.2.A1_a_at	A	A1TS	POPTR_0006s04960	POPTR_0006s04960 (11)	scaffold_6:3459753-3459788(-) (11)	NA	O50314	Magnesium-chelatase subunit H	AT5G13630.1	"magnesium-chelatase subunit chlH, chloroplast, putative / Mg-protoporphyrin IX chelatase, putative (CHLH) "	LOC_Os03g20700.2	"magnesium-chelatase, putative, expressed"	NA	NA	GO:0009058|biosynthetic process	NA	NA
Ptp.1134.1.S1_x_at	A	A1TS	POPTR_0001s42970	POPTR_0001s42970 (10)	scaffold_1:43043750-43045728(+) (10)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.1137.1.S1_at	A	A1TS	POPTR_0009s10520	POPTR_0009s10520 (11)	scaffold_9:9022140-9023673(+) (11)	NA	NA	NA	AT3G19220.1	protein disulfide isomerases 	LOC_Os09g28480.1	expressed protein	Medtr4g129620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.114.1.S1_at	A	A1TS	POPTR_0010s19840	POPTR_0010s19840 (11)	scaffold_10:17628320-17629688(-) (11)	NA	Q8L884	Auxin transporter-like protein 4	AT2G38120.1	Transmembrane amino acid transporter family protein 	LOC_Os01g63770.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr3g024670.1	"Amino acid transporter, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1140.1.A1_at	A	A1TS	POPTR_0013s00790	POPTR_0013s00790 (11)	scaffold_13:404596-405279(-) (11)	NA	O23403	"PsbP domain-containing protein 1, chloroplastic"	AT4G15510.1	Photosystem II reaction center PsbP family protein 	LOC_Os12g37710.1	"PsbP, putative, expressed"	NA	NA	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.1142.1.S1_at	A	A1MS	POPTR_0001s11410	POPTR_0001s11410 (10)	scaffold_1:8880225-8880511(-) (10)	NA	NA	NA	AT4G24140.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g38860.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr7g103890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1145.1.A1_at	A	A1TS	POPTR_0014s09840	POPTR_0014s09840 (11)	scaffold_14:7371361-7372977(+) (11)	POPTR_0002s17650 (6)	Q5U5C5	U4/U6 small nuclear ribonucleoprotein Prp31	AT1G60170.1	pre-mRNA processing ribonucleoprotein binding region-containing protein 	LOC_Os04g46890.2	"pre-mRNA-processing factor 31, putative, expressed"	Medtr7g037700.1	"Pre-mRNA processing ribonucleoprotein, binding region; NOSIC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1147.1.S1_at	A	A1TS	POPTR_0008s12220	POPTR_0008s12220 (10)	scaffold_8:7891082-7892181(-) (10)	NA	Q9ZSY2	Chaperone protein dnaJ 15	AT1G68370.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os01g32870.2	"heat shock protein DnaJ, putative, expressed"	Medtr1g140590.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.1148.1.S1_s_at	A	A1TS	POPTR_0001s32000	POPTR_0001s32000 (11)	scaffold_1:30444097-30444366(-) (11)	NA	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os04g37820.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1150.1.S1_at	A	A1TS	POPTR_0010s21970	POPTR_0010s21970 (11)	scaffold_10:19073277-19073705(-) (11)	NA	NA	NA	AT5G13560.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink). 	LOC_Os05g06980.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1151.1.S1_s_at	A	A1TS	POPTR_0005s23590	POPTR_0005s23590 (11)	scaffold_5:22313537-22313813(+) (11)	POPTR_0284s00200 (7)	Q94LX1	"Chlorophyllase-1, chloroplastic"	AT1G19670.1	chlorophyllase 1 	LOC_Os10g28370.1	"chlorophyllase-2, chloroplast precursor, putative, expressed"	Medtr8g096370.1	Chlorophyllase 	GO:0015996|chlorophyll catabolic process	GO:0047746|chlorophyllase activity	NA
Ptp.1152.1.S1_s_at	A	A1TS	POPTR_0005s18350	POPTR_0005s18350 (11)	scaffold_5:16502841-16503326(-) (11)	NA	Q9SLN1	Filament-like plant protein 7	AT2G23360.1	Plant protein of unknown function (DUF869) 	LOC_Os04g55570.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr4g130220.1	"Protein of unknown function DUF869, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1153.1.A1_at	A	A1TS	POPTR_0003s05150	POPTR_0003s05150 (11)	scaffold_3:6360676-6360955(+) (11)	NA	Q8U3Y2	Glyoxylate reductase	AT1G79870.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os01g12830.2	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr4g009370.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.1154.1.S1_s_at	A	A1TS	POPTR_0005s22060	POPTR_0005s22060 (11)	scaffold_5:21066341-21067217(+) (11)	NA	P0C031	Ubiquitin-NEDD8-like protein RUB2	AT1G31340.1	related to ubiquitin 1 	LOC_Os06g44080.1	"ubiquitin family protein, putative, expressed"	Medtr5g100010.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1159.1.A1_a_at	A	A1TA	POPTR_0008s01230	POPTR_0008s01230 (11)	scaffold_8:599001-599110(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1159.1.A1_at	A	A1TA	POPTR_0008s01230	POPTR_0008s01230 (10)	scaffold_8:598576-599067(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.116.1.S1_s_at	A	A1TS	POPTR_0015s05130	POPTR_0015s05130 (11)	scaffold_15:5442834-5443323(+) (11)	NA	Q9FDW1	Transcription factor MYB44	AT1G17950.1	myb domain protein 52 	LOC_Os03g51110.1	"MYB family transcription factor, putative, expressed"	Medtr6g078130.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1160.1.A1_at	A	A1TS	POPTR_0007s01230	POPTR_0007s01230 (10)	scaffold_7:671954-672714(-) (10)	NA	Q6LA43	Two-component response regulator-like APRR2	AT2G20570.1	GBF's pro-rich region-interacting factor 1 	LOC_Os06g24070.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr4g108850.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1161.1.S1_s_at	A	A1TS	POPTR_0007s12630	POPTR_0007s12630 (11)	scaffold_7:12894768-12897471(+) (11)	NA	NA	NA	AT4G36660.1	Protein of unknown function (DUF1195) 	LOC_Os07g41660.1	expressed protein	Medtr5g019780.1	Protein of unknown function DUF1195 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1162.1.A1_at	A	A1TS	POPTR_0005s11850	POPTR_0005s11850 (11)	scaffold_5:8614259-8614781(+) (11)	NA	Q7TP47	Heterogeneous nuclear ribonucleoprotein Q	AT2G44710.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g45930.3	"RNA recognition motif containing protein, expressed"	Medtr8g090220.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.1166.1.S1_at	A	A1TS	POPTR_0010s22220	POPTR_0010s22220 (10)	scaffold_10:19202489-19202828(-) (10)	NA	Q9FE20	Serine/threonine-protein kinase PBS1	AT5G18610.2	Protein kinase superfamily protein 	LOC_Os01g71000.1	"protein kinase APK1B, chloroplast precursor, putative, expressed"	Medtr7g120700.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1168.1.A1_at	A	A1TS	POPTR_0008s15060	POPTR_0008s15060 (11)	scaffold_8:10051260-10051451(+) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1168.2.A1_s_at	A	A1TS	POPTR_0008s15060	POPTR_0008s15060 (11)	scaffold_8:10057385-10057943(+) (11)	NA	Q94KE2	Protein TIME FOR COFFEE	AT3G22380.1	time for coffee 	LOC_Os07g38360.2	expressed protein	Medtr1g132680.1	"Protein TIME FOR COFFEE, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1169.1.A1_at	A	A1TA	POPTR_0008s17200	POPTR_0008s17200 (11)	scaffold_8:11548768-11551654(+) (11)	NA	NA	NA	AT1G04530.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g04710.1	expressed protein	Medtr1g087320.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1171.1.A1_at	A	A1TS	POPTR_0009s09370	POPTR_0009s09370 (10)	scaffold_9:8320931-8321308(+) (10)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os03g55450.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1172.1.S1_s_at	A	A1MS	POPTR_0014s16580	POPTR_0014s16580 (11)	scaffold_14:12668741-12668910(+) (11)	NA	O23310	Nuclear transcription factor Y subunit B-3	AT4G14540.1	"nuclear factor Y, subunit B3 "	LOC_Os07g41580.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr5g103350.1	"Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; Transcription factor CBF/NF-Y/archaeal histone "	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.1178.1.A1_at	A	A1TS	POPTR_0006s16370	POPTR_0006s16370 (9)	scaffold_6:14308401-14309470(+) (9)	NA	Q8W593	"Probable lactoylglutathione lyase, chloroplast"	AT1G67280.1	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein 	LOC_Os05g14194.1	"glyoxalase family protein, putative, expressed"	Medtr4g159360.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1179.1.A1_at	A	A1TS	POPTR_0001s30330	POPTR_0001s30330 (11)	scaffold_1:28844550-28845059(+) (11)	NA	NA	NA	AT3G19553.1	Amino acid permease family protein 	LOC_Os03g37984.2	"amino acid permease family protein, putative, expressed"	Medtr5g005210.1	Amino acid/polyamine transporter I 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1180.1.A1_at	A	A1TS	POPTR_0002s02820	POPTR_0002s02820 (10)	scaffold_2:1722164-1722625(-) (10)	NA	NA	NA	AT5G42520.1	basic pentacysteine 6 	LOC_Os06g04010.2	"GAGA-binding protein, putative, expressed"	Medtr1g028170.1	GAGA binding-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1181.1.S1_s_at	A	A1TS	POPTR_0014s15390	POPTR_0014s15390 (11)	scaffold_14:11464276-11464599(-) (11)	NA	P48417	"Allene oxide synthase, chloroplastic"	AT4G15440.1	hydroperoxide lyase 1 	LOC_Os02g02000.1	"cytochrome P450, putative, expressed"	Medtr2g104500.1	Cytochrome P450 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1183.1.A1_s_at	A	A1TS	POPTR_0005s02270	POPTR_0005s02270 (11)	scaffold_5:1487793-1488092(+) (11)	NA	NA	NA	AT5G27860.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 23049 Blast hits to 11981 proteins in 648 species: Archae - 2; Bacteria - 589; Metazoa - 13464; Fungi - 1977; Plants - 1635; Viruses - 89; Other Eukaryotes - 5293 (source: NCBI BLink). 	LOC_Os12g36740.1	"splicing factor, arginine/serine-rich 18, putative, expressed"	Medtr7g138420.1	"zgc:136322 protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1184.1.A1_a_at	A	A1TS	POPTR_0005s22580	POPTR_0005s22580 (11)	scaffold_5:21494789-21494973(-) (11)	POPTR_0002s05920 (7)	Q680C0	GDSL esterase/lipase At4g10955	AT5G50890.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g54810.1	"lipase, putative, expressed"	Medtr5g098440.1	"lipase class 3 family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1184.2.A1_at	A	A1TS	POPTR_0005s22580	POPTR_0005s22580 (11)	scaffold_5:21494423-21494690(-) (11)	NA	Q680C0	GDSL esterase/lipase At4g10955	AT5G50890.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g54810.1	"lipase, putative, expressed"	Medtr5g098440.1	"lipase class 3 family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1187.1.A1_s_at	A	A1TS	POPTR_0002s12070	POPTR_0002s12070 (11)	scaffold_2:8972388-8973046(-) (11)	NA	NA	NA	AT5G43130.1	TBP-associated factor 4 	LOC_Os02g43750.1	"transcription initiation factor, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006352|transcription initiation||GO:0006461|protein complex assembly	GO:0016986|transcription initiation factor activity	GO:0005669|transcription factor TFIID complex
Ptp.119.1.S1_at	A	A1TS	POPTR_0001s09850	POPTR_0001s09850 (10)	scaffold_1:7596803-7597164(-) (10)	NA	P31531	1-aminocyclopropane-1-carboxylate synthase	AT4G11280.1	1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 	LOC_Os04g48850.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr7g088850.1	Aminotransferases class-I pyridoxal-phosphate-binding site; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.1190.1.S1_at	A	A1TS	POPTR_0007s12190	POPTR_0007s12190 (11)	scaffold_7:12536869-12537348(+) (11)	NA	Q8W4F0	Protein DA1-related 1	AT4G36860.1	LIM domain-containing protein 	LOC_Os06g08400.2	"LIM domain-containing protein, putative, expressed"	Medtr8g094020.1	"LIM, zinc-binding; Ubiquitin interacting motif "	NA	GO:0008270|zinc ion binding	NA
Ptp.1191.1.A1_at	A	A1TS	POPTR_0018s12970	POPTR_0018s12970 (9)	scaffold_18:13434949-13435126(+) (9)	NA	O22773	"Thylakoid lumenal 16.5 kDa protein, chloroplastic"	AT4G02530.1	chloroplast thylakoid lumen protein 	LOC_Os06g49160.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative, expressed"	Medtr8g120710.1	"thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1194.1.A1_at	A	A1TS	POPTR_0016s07890	POPTR_0016s07890 (11)	scaffold_16:5720084-5720349(+) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT5G22400.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g05900.1	"rhoGAP domain containing protein, expressed"	Medtr7g127660.1	PAK-box/P21-Rho-binding; RhoGAP 	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.1196.1.A1_at	A	A1TS	POPTR_0002s16230	POPTR_0002s16230 (11)	scaffold_2:12145021-12145516(+) (11)	NA	Q6EVK6	ATP-dependent helicase BRM	AT2G46020.2	"transcription regulatory protein SNF2, putative "	LOC_Os02g02290.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g087810.1	"SNF2-related; Bromodomain; Helicase, C-terminal; ; "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity	GO:0005634|nucleus
Ptp.1197.1.A1_at	A	A1TS	POPTR_0007s13200	POPTR_0007s13200 (10)	scaffold_7:13321756-13321985(-) (10)	NA	C6E2H7	GTP-binding protein era homolog	AT5G66470.1	RNA binding;GTP binding 	LOC_Os05g49220.2	"GTP-binding protein, putative, expressed"	Medtr5g020330.1	"GTP-binding protein, HSR1-related "	NA	GO:0003723|RNA binding||GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1198.1.A1_at	A	A1TS	POPTR_0013s07900	POPTR_0013s07900 (11)	scaffold_13:6852446-6852481(+) (11)	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity||GO:0008270|zinc ion binding	GO:0016020|membrane
Ptp.1198.1.A1_s_at	A	A1TS	POPTR_0013s07900	POPTR_0013s07900 (11)	scaffold_13:6852469-6852675(+) (11)	NA	Q9M9M4	Cellulose synthase-like protein D3	AT3G03050.1	cellulose synthase-like D3 	LOC_Os06g02180.1	"CSLD2 - cellulose synthase-like family D, expressed"	Medtr4g107300.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity||GO:0008270|zinc ion binding	GO:0016020|membrane
Ptp.1199.1.S1_at	A	A1TS	POPTR_0006s00620	POPTR_0006s00620 (11)	scaffold_6:331086-331621(+) (11)	NA	Q651X6	Cellulose synthase-like protein E6	AT1G55850.1	cellulose synthase like E1 	LOC_Os09g30130.1	"CSLE6 - cellulose synthase-like family E, expressed"	Medtr3g079530.1	Cellulose synthase 	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.12.1.A1_at	A	A1TS	POPTR_0008s14910	POPTR_0008s14910 (11)	scaffold_8:9931814-9933724(+) (11)	NA	Q5T280	Uncharacterized protein C9orf114	AT5G19300.1	"CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink). "	LOC_Os04g17064.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1200.1.A1_at	A	A1TS	POPTR_0015s02200	POPTR_0015s02200 (11)	scaffold_15:1524574-1524688(-) (11)	NA	NA	NA	AT3G61690.1	nucleotidyltransferases 	LOC_Os03g11240.1	"nucleotidyltransferase, putative, expressed"	AC233680_11.1	hypothetical protein AC233680.1 63615-60000 E EGN_Mt090430 200	NA	GO:0016779|nucleotidyltransferase activity	NA
Ptp.1202.1.A1_at	A	A1TS	POPTR_0013s07300	POPTR_0013s07300 (11)	scaffold_13:6065236-6065586(-) (11)	NA	NA	NA	AT2G44820.1	unknown protein; Has 70 Blast hits to 70 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g12480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1203.1.A1_s_at	A	A1TS	POPTR_0010s16690	POPTR_0010s16690 (11)	scaffold_10:15558363-15558643(-) (11)	NA	Q8GYW9	Probable methyltransferase PMT4	AT2G03480.2	QUASIMODO2 LIKE 2 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr4g115450.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1205.1.S1_at	A	A1TS	POPTR_0001s45870	POPTR_0001s45870 (11)	scaffold_1:46371692-46372207(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT1G76890.2	Duplicated homeodomain-like superfamily protein 	LOC_Os04g45750.2	expressed protein	Medtr1g125310.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1206.1.A1_at	A	A1TS	POPTR_0001s03590	POPTR_0001s03590 (11)	scaffold_1:2867121-2867397(+) (11)	NA	NA	NA	AT1G80860.1	phospholipid N-methyltransferase 	LOC_Os02g39880.1	expressed protein	Medtr4g022030.1	Phospholipid methyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1208.1.A1_at	A	A1TS	POPTR_0018s05340	POPTR_0018s05340 (9)	scaffold_18:4865841-4866333(+) (9)	NA	NA	NA	AT5G07950.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os03g11450.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.121.1.S1_s_at	A	A1TS	POPTR_0003s13370	POPTR_0003s13370 (9)	scaffold_3:13766368-13766895(-) (9)	NA	Q9FE38	Potassium transporter 3	AT4G23640.1	Potassium transporter family protein 	LOC_Os01g70940.2	"potassium transporter, putative, expressed"	Medtr5g035830.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.1210.1.A1_at	A	A1TS	POPTR_0003s12770	POPTR_0003s12770 (9)	scaffold_3:13245468-13245854(-) (9)	NA	Q55DY8	Mitoferrin	AT4G11440.1	Mitochondrial substrate carrier family protein 	LOC_Os02g44570.2	"mitochondrial carrier protein, putative, expressed"	Medtr4g149370.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1212.1.S1_at	A	A1TS	POPTR_0006s04370	POPTR_0006s04370 (11)	scaffold_6:2970260-2971819(+) (11)	NA	P74476	Peptide chain release factor 2	AT3G57190.1	"peptide chain release factor, putative "	LOC_Os05g31160.1	"peptide chain release factor 2, putative, expressed"	Medtr1g062640.1	Class I peptide chain release factor; PCRF 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
Ptp.1216.1.A1_s_at	A	A1TS	POPTR_0013s02210	POPTR_0013s02210 (11)	scaffold_13:1312163-1312505(-) (11)	NA	Q5H7P5	Mannosylglycoprotein endo-beta-mannosidase	AT1G09010.1	glycoside hydrolase family 2 protein 	LOC_Os05g32530.1	"mannosylglycoprotein endo-beta-mannosidase, putative, expressed"	Medtr1g099500.1	"Glycoside hydrolase family 2, sugar binding "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1217.1.S1_at	A	A1TS	POPTR_0003s17350	POPTR_0003s17350 (10)	scaffold_3:16728479-16728873(+) (10)	NA	O49318	Probable leucine-rich repeat receptor-like protein kinase At2g33170	AT2G33170.1	Leucine-rich repeat receptor-like protein kinase family protein 	LOC_Os04g42700.1	"receptor-like protein kinase precursor, putative, expressed"	Medtr1g093120.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1218.1.A1_s_at	A	A2TS	POPTR_0006s13470	POPTR_0006s13470 (11)//POPTR_0006s13480 (11)	scaffold_6:10696154-10696976(-) (11)//scaffold_6:10704071-10704893(-) (11)	NA	Q9SF40	60S ribosomal protein L4-1	AT3G09630.1	Ribosomal protein L4/L1 family 	LOC_Os07g08330.1	"ribosomal protein L4, putative, expressed"	Medtr1g065440.1	"Ribosomal protein L4/L1e, archeabacterial like "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1219.1.S1_at	A	A1TS	POPTR_0016s02570	POPTR_0016s02570 (11)	scaffold_16:1266183-1266568(-) (11)	NA	Q945B7	"Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic"	AT3G56940.1	"dicarboxylate diiron protein, putative (Crd1) "	LOC_Os01g17170.1	"magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed"	Medtr7g105140.1	Ferritin/ribonucleotide reductase-like; Ferritin-related 	NA	GO:0046872|metal ion binding	NA
Ptp.1219.2.S1_s_at	A	A2TS	POPTR_0006s02810	POPTR_0006s02810 (9)//POPTR_0016s02570 (9)	scaffold_16:1267013-1267415(-) (9)//scaffold_6:1772828-1773205(-) (9)	NA	Q945B7	"Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic"	AT3G56940.1	"dicarboxylate diiron protein, putative (Crd1) "	LOC_Os01g17170.1	"magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed"	Medtr7g105140.1	Ferritin/ribonucleotide reductase-like; Ferritin-related 	NA	GO:0046872|metal ion binding	NA
Ptp.1220.1.S1_at	A	A1TS	POPTR_0017s13070	POPTR_0017s13070 (9)	scaffold_17:13221706-13221841(-) (9)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1220.1.S1_s_at	A	A1TS	POPTR_0017s13070	POPTR_0017s13070 (11)	scaffold_17:13221871-13222094(-) (11)	NA	NA	NA	AT1G74160.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G18620.1); Has 3407 Blast hits to 2217 proteins in 314 species: Archae - 0; Bacteria - 264; Metazoa - 1296; Fungi - 318; Plants - 346; Viruses - 34; Other Eukaryotes - 1149 (source: NCBI BLink). 	LOC_Os07g01860.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1221.1.S1_at	A	A1TS	POPTR_0007s13500	POPTR_0007s13500 (11)	scaffold_7:13552520-13553230(-) (11)	NA	O23240	"D-2-hydroxyglutarate dehydrogenase, mitochondrial"	AT4G36400.2	FAD-linked oxidases family protein 	LOC_Os07g08950.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.1224.1.S1_s_at	A	A1TS	POPTR_0018s11910	POPTR_0018s11910 (11)	scaffold_18:12565212-12565360(-) (11)	NA	Q46036	Outer membrane lipoprotein blc	AT5G58070.1	temperature-induced lipocalin 	LOC_Os08g34150.1	"OsTIL-2  Temperature-induced lipocalin-2, expressed"	Medtr8g146020.1	Lipocalin; Calycin_like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1225.1.S1_at	A	A1TS	POPTR_0006s03520	POPTR_0006s03520 (11)	scaffold_6:2284672-2286675(-) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os01g16350.2	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.2	Hydroxymethylglutaryl-coenzyme A lyase active site 	NA	GO:0003824|catalytic activity	NA
Ptp.1226.1.S1_at	A	A1TS	POPTR_0014s03980	POPTR_0014s03980 (11)	scaffold_14:3165136-3165481(-) (11)	NA	Q9LN68	Probable galacturonosyltransferase-like 1	AT1G19300.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1227.1.S1_at	A	A1TS	POPTR_0009s07040	POPTR_0009s07040 (11)	scaffold_9:6681309-6682041(+) (11)	NA	Q93WX6	"Cysteine desulfurase 2, chloroplastic"	AT1G08490.1	chloroplastic NIFS-like cysteine desulfurase 	LOC_Os12g18900.1	"aminotransferase, putative, expressed"	Medtr3g105250.1	"Aminotransferase, class V; "	GO:0008152|metabolic process	NA	NA
Ptp.123.1.S1_at	A	A1TS	POPTR_0012s04000	POPTR_0012s04000 (11)	scaffold_12:3212488-3213645(-) (11)	NA	Q9M8S6	Potassium channel SKOR	AT3G02850.1	STELAR K+ outward rectifier 	LOC_Os06g14030.1	"potassium channel SKOR, putative, expressed"	Medtr5g085570.1	Cyclic nucleotide-binding 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.1231.1.S1_at	A	A1TS	POPTR_0015s07330	POPTR_0015s07330 (11)	scaffold_15:8509629-8510055(+) (11)	NA	Q9ZTP5	"Ribulose-phosphate 3-epimerase, chloroplastic"	AT5G61410.2	D-ribulose-5-phosphate-3-epimerase 	LOC_Os03g07300.1	"ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0004750|ribulose-phosphate 3-epimerase activity	NA
Ptp.1231.2.S1_s_at	A	A1TS	POPTR_0015s07330	POPTR_0015s07330 (11)	scaffold_15:8507887-8508833(+) (11)	NA	Q9ZTP5	"Ribulose-phosphate 3-epimerase, chloroplastic"	AT5G61410.2	D-ribulose-5-phosphate-3-epimerase 	LOC_Os03g07300.1	"ribulose-phosphate 3-epimerase, chloroplast precursor, putative, expressed"	NA	NA	GO:0005975|carbohydrate metabolic process	GO:0004750|ribulose-phosphate 3-epimerase activity	NA
Ptp.1234.1.S1_s_at	A	A1TS	POPTR_0019s12550	POPTR_0019s12550 (11)	scaffold_19:13605599-13606162(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G59690.1	IQ-domain 13 	LOC_Os05g03190.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1235.1.A1_s_at	A	A1TS	POPTR_0004s23530	POPTR_0004s23530 (11)	scaffold_4:22224055-22225205(+) (11)	NA	Q8BMJ2	"Leucyl-tRNA synthetase, cytoplasmic"	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os09g32650.1	"leucyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr7g006010.1	"Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.1235.2.A1_a_at	A	A1MS	POPTR_0004s23530	POPTR_0004s23530 (11)	scaffold_4:22224071-22224266(+) (11)	NA	Q8BMJ2	"Leucyl-tRNA synthetase, cytoplasmic"	AT1G09620.1	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases 	LOC_Os09g32650.1	"leucyl-tRNA synthetase, cytoplasmic, putative, expressed"	Medtr7g006010.1	"Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; ; "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.1236.1.S1_at	A	A1TS	POPTR_0006s18890	POPTR_0006s18890 (9)	scaffold_496:4141-5948(+) (11)//scaffold_594:2028-11551(-) (11)//scaffold_6:17512444-17513043(-) (10)//scaffold_6:17592561-17602458(-) (11)//scaffold_6:17626824-17628652(-) (9)	NA	O08560	Diacylglycerol kinase zeta	AT4G30340.1	diacylglycerol kinase 7 	LOC_Os02g54650.1	"diacylglycerol kinase, putative, expressed"	Medtr8g128070.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1237.1.A1_s_at	A	A1TS	POPTR_0012s05840	POPTR_0012s05840 (11)	scaffold_12:5661600-5661873(+) (11)	NA	Q84M92	Actin-related protein 4	AT1G18450.1	actin-related protein 4 	LOC_Os08g04280.2	"actin, putative, expressed"	Medtr5g075350.3	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.1238.1.S1_at	A	A1TS	POPTR_0009s08520	POPTR_0009s08520 (11)	scaffold_9:7775658-7777228(-) (11)	POPTR_0001s29420 (8)	P19446	"Malate dehydrogenase, glyoxysomal"	AT2G22780.1	peroxisomal NAD-malate dehydrogenase 1 	LOC_Os12g43630.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr4g121950.1	Lactate/malate dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.1239.2.S1_at	A	A1TS	POPTR_0001s12220	POPTR_0001s12220 (9)	scaffold_1:9456882-9457266(-) (9)	NA	Q8L7E3	Vacuolar-sorting receptor 7	AT1G30900.1	VACUOLAR SORTING RECEPTOR 6 	LOC_Os06g45380.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.124.1.S1_at	A	A1TS	POPTR_0014s02310	POPTR_0014s02310 (11)	scaffold_14:1964259-1964560(-) (11)	NA	P42753	Cyclin-D3-1	AT4G34160.1	CYCLIN D3;1 	LOC_Os09g29100.1	"cyclin, putative, expressed"	Medtr3g147210.1	"Cyclin, N-terminal; "	NA	NA	GO:0005634|nucleus
Ptp.1241.1.S1_at	A	A1TS	POPTR_0005s20770	POPTR_0005s20770 (11)	scaffold_5:19907042-19907553(+) (11)	NA	Q54M22	"2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial"	AT1G21400.1	Thiamin diphosphate-binding fold (THDP-binding) superfamily protein 	LOC_Os12g08260.4	"dehydrogenase E1 component domain containing protein, expressed"	Medtr3g143240.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
Ptp.1243.1.S1_at	A	A1TS	POPTR_0012s09720	POPTR_0012s09720 (11)	scaffold_12:10667841-10668027(-) (11)	NA	Q08480	Adenylate kinase B	AT5G63400.1	adenylate kinase 1 	LOC_Os11g20790.1	"adenylate kinase, putative, expressed"	Medtr8g109570.1	Adenylate kinase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.1244.1.S1_s_at	A	A1TS	POPTR_0017s00420	POPTR_0017s00420 (11)	scaffold_17:139348-140465(+) (11)	NA	P50398	Rab GDP dissociation inhibitor alpha	AT3G59920.1	RAB GDP dissociation inhibitor 2 	LOC_Os05g23860.1	"rab GDP dissociation inhibitor alpha, putative, expressed"	Medtr4g137200.1	Rab GTPase activator 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1246.1.A1_at	A	A1TS	POPTR_0006s06480	POPTR_0006s06480 (11)	scaffold_6:4656770-4656980(+) (11)	NA	O22845	Calmodulin-like protein 5	AT2G43290.1	Calcium-binding EF-hand family protein 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g121290.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1247.1.S1_s_at	A	A1TS	POPTR_0006s25830	POPTR_0006s25830 (11)	scaffold_6:24184327-24186020(+) (11)	NA	P46644	"Aspartate aminotransferase, chloroplastic"	AT5G11520.1	aspartate aminotransferase 3 	LOC_Os01g55540.1	"aminotransferase, classes I and II, domain containing protein, expressed"	Medtr4g110030.1	Aspartate/other aminotransferase; ; 	GO:0009058|biosynthetic process	"GO:0016769|""transferase activity, transferring nitrogenous groups""||GO:0030170|pyridoxal phosphate binding"	NA
Ptp.1250.1.S1_at	A	A1TS	POPTR_0005s04700	POPTR_0005s04700 (11)	scaffold_5:3151300-3151747(-) (11)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G54610.3	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr7g140180.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1251.1.A1_s_at	A	A1TS	POPTR_0001s15510	POPTR_0001s15510 (11)	scaffold_1:12349075-12349549(+) (11)	NA	Q869R9	Myb-like protein J	AT5G47390.1	myb-like transcription factor family protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.1252.1.S1_s_at	A	A1TS	POPTR_0004s01660	POPTR_0004s01660 (11)	scaffold_4:1002949-1003310(-) (11)	NA	Q9ZS97	"UPF0051 protein ABCI8, chloroplastic"	AT4G04770.1	ATP binding cassette protein 1 	LOC_Os01g61400.1	"sufB/sufD domain containing protein, putative, expressed"	Medtr7g029700.1	FeS assembly protein SufB 	GO:0016226|iron-sulfur cluster assembly	GO:0005515|protein binding	NA
Ptp.1257.1.S1_at	A	A2MS	POPTR_0003s01980	POPTR_0027s00240 (11)//POPTR_0003s01980 (11)	scaffold_27:44465-44502(-) (11)//scaffold_3:1879750-1879787(+) (11)	NA	NA	NA	AT1G15780.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast hits to 43153 proteins in 1828 species: Archae - 30; Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants - 7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI BLink). 	LOC_Os08g45080.1	expressed protein	Medtr2g127080.1	"PAX-interacting protein 1, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1258.1.S1_s_at	A	A1TS	POPTR_0015s07640	POPTR_0015s07640 (11)	scaffold_15:8942318-8942675(+) (11)	NA	Q02283	Homeobox-leucine zipper protein HAT5	AT3G01470.1	homeobox 1 	LOC_Os02g49700.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g113090.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.1259.1.S1_s_at	A	A1TS	POPTR_0003s05450	POPTR_0003s05450 (10)	scaffold_3:6723782-6723879(+) (10)	NA	Q94738	97 kDa heat shock protein	AT1G79930.1	heat shock protein 91 	LOC_Os01g08560.2	"DnaK family protein, putative, expressed"	AC234703_5.2	Heat shock protein Hsp70; Immunoglobulin-like AC234703.1 29300-35777 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.126.1.S1_s_at	A	A1TS	POPTR_0004s11760	POPTR_0004s11760 (11)	scaffold_4:10619475-10619825(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT5G15490.1	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25690.1	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.1260.1.A1_at	A	A1TS	POPTR_0007s12060	POPTR_0007s12060 (11)	scaffold_7:12383691-12383734(+) (11)	NA	NA	NA	AT3G50830.1	cold-regulated 413-plasma membrane 2 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1260.1.A1_s_at	A	A1TS	POPTR_0007s12060	POPTR_0007s12060 (11)	scaffold_7:12382176-12383488(+) (11)	NA	NA	NA	AT3G50830.1	cold-regulated 413-plasma membrane 2 	LOC_Os03g55850.1	"cold acclimation protein WCOR413, putative, expressed"	AC157372_4.1	Cold acclimation WCOR413 AC157372.2 16613-17666 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1261.1.S1_s_at	A	A1TS	POPTR_0011s14520	POPTR_0011s14520 (9)	scaffold_11:16889915-16890238(+) (9)	NA	Q6Y2X3	DnaJ homolog subfamily C member 14	AT1G79030.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os12g41820.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g077040.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.1262.1.S1_s_at	A	A1TS	POPTR_0006s12740	POPTR_0006s12740 (11)	scaffold_6:9890505-9890726(+) (11)	NA	P54774	Cell division cycle protein 48 homolog	AT5G03340.1	"ATPase, AAA-type, CDC48 protein "	LOC_Os10g30580.1	"cell division control protein 48 homolog E, putative, expressed"	AC235487_4.1	"AAA ATPase, CDC48 AC235487.1 17132-12297 H EGN_Mt090430 200"	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1264.1.S1_s_at	A	A1TS	POPTR_0008s19870	POPTR_0008s19870 (11)	scaffold_8:13712392-13712815(-) (11)	NA	Q9XIF4	Thioredoxin H7	AT1G59730.1	thioredoxin H-type 7 	LOC_Os03g58630.1	"thioredoxin, putative, expressed"	Medtr5g038930.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.1265.2.A1_s_at	A	A1TS	POPTR_0025s00500	POPTR_0025s00500 (11)	scaffold_25:211168-212613(-) (11)	NA	Q93VD3	CBL-interacting serine/threonine-protein kinase 23	AT1G30270.1	CBL-interacting protein kinase 23 	LOC_Os07g05620.2	"CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr2g056750.1	Protein kinase; NAF; 	GO:0007165|signal transduction||GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1266.1.S1_a_at	A	A1TS	POPTR_0010s21370	POPTR_0010s21370 (11)	scaffold_10:18684956-18685158(+) (11)	NA	Q42540	Ubiquitin-conjugating enzyme E2 7	AT5G59300.1	ubiquitin carrier protein 7 	LOC_Os05g38550.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g078810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.1267.1.S1_x_at	A	A1TS	POPTR_0013s11710	POPTR_0013s11710 (11)	scaffold_13:12373902-12375223(-) (11)	NA	NA	NA	AT1G71950.1	"Proteinase inhibitor, propeptide "	LOC_Os05g35740.1	"subtilisin N-terminal Region family protein, expressed"	Medtr1g068620.1	"Proteinase inhibitor, propeptide "	GO:0043086|negative regulation of catalytic activity	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.127.1.S1_s_at	A	A1TS	POPTR_0013s03860	POPTR_0013s03860 (11)	scaffold_13:2517005-2517547(-) (11)	NA	P32294	Auxin-induced protein 22B	AT5G43700.1	AUX/IAA transcriptional regulator family protein 	LOC_Os12g40900.1	"OsIAA31 - Auxin-responsive Aux/IAA gene family member, expressed"	AC233668_17.1	AUX/IAA protein AC233668.2 65033-67329 F EGN_Mt090430 200	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1271.2.S1_a_at	A	A1TS	POPTR_0003s01810	POPTR_0003s01810 (11)	scaffold_3:1678577-1679286(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os07g43050.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1271.3.S1_a_at	A	A1TS	POPTR_0003s01810	POPTR_0003s01810 (11)	scaffold_3:1679909-1680694(-) (11)	NA	P30352	Serine/arginine-rich splicing factor 2	AT5G64200.2	ortholog of human splicing factor SC35 	LOC_Os07g43050.1	"RNA recognition motif containing protein, expressed"	Medtr5g078930.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1273.1.S1_at	A	A1TS	POPTR_0008s07370	POPTR_0008s07370 (11)	scaffold_8:4520962-4521610(-) (11)	NA	Q9SIY8	Laccase-5	AT2G40370.1	laccase 5 	LOC_Os01g61160.1	"laccase precursor protein, putative, expressed"	Medtr3g097050.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1274.1.S1_s_at	A	A1TS	POPTR_0015s04570	POPTR_0015s04570 (11)	scaffold_15:4745707-4745901(-) (11)	NA	Q5SMQ9	Auxin efflux carrier component 1	AT1G73590.1	Auxin efflux carrier family protein 	LOC_Os02g50960.1	"auxin efflux carrier component, putative, expressed"	Medtr6g083450.1	Auxin Efflux Carrier 	NA	NA	GO:0016021|integral to membrane
Ptp.1275.2.S1_s_at	A	A1TS	POPTR_0018s09030	POPTR_0018s09030 (11)	scaffold_18:9905562-9905599(-) (11)	NA	Q9XEX2	Peroxiredoxin-2B	AT1G65980.1	thioredoxin-dependent peroxidase 1 	LOC_Os01g48420.1	"peroxiredoxin, putative, expressed"	Medtr6g099220.1	Thioredoxin fold 	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.1280.1.S1_at	A	A1TS	POPTR_0005s26900	POPTR_0005s26900 (11)	scaffold_5:24745236-24745638(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1280.1.S1_s_at	A	A1TS	POPTR_0005s26900	POPTR_0005s26900 (11)	scaffold_5:24745310-24745615(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os07g32660.1	"monocopper oxidase, putative, expressed"	Medtr4g064620.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1281.1.A1_at	A	A1TS	POPTR_0010s02280	POPTR_0010s02280 (11)	scaffold_10:2622536-2623346(-) (11)	NA	Q9JK24	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma	AT5G18580.1	tonneau 2 (TON2) 	LOC_Os05g05710.1	"serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed"	Medtr8g139320.1	EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1286.1.A1_at	A	A1TS	POPTR_0005s19180	POPTR_0005s19180 (10)	scaffold_5:17794427-17794774(-) (10)	NA	NA	NA	AT1G43130.1	like COV 2 	LOC_Os01g64780.1	"COV1, putative, expressed"	Medtr3g144480.1	Protein of unknown function DUF502 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1286.3.S1_s_at	A	A1TS	POPTR_0006s18960	POPTR_0006s18960 (11)	scaffold_6:17747105-17747543(+) (11)	POPTR_0018s10630 (6)	P53533	Chaperone protein ClpB 1	AT5G57710.1	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g15230.1	"heat shock protein-related, putative, expressed"	Medtr8g127930.1	"ATP binding, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1287.1.S1_at	A	A1TS	POPTR_0012s11850	POPTR_0012s11850 (9)	scaffold_12:12219986-12220267(+) (9)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr5g084520.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1287.2.S1_s_at	A	A1TS	POPTR_0015s12470	POPTR_0015s12470 (11)	scaffold_15:12709571-12710536(+) (11)	NA	P31582	Ras-related protein RHA1	AT5G45130.1	RAB homolog 1 	LOC_Os03g46390.1	"ras-related protein, putative, expressed"	Medtr3g086620.1	"Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1288.1.S1_at	A	A1TS	POPTR_0010s01850	POPTR_0010s01850 (11)	scaffold_10:2025029-2026069(-) (11)	NA	A3KPF2	Probable histone-arginine methyltransferase CARM1B	AT5G49020.1	protein arginine methyltransferase 4A 	LOC_Os07g47500.1	"histone-arginine methyltransferase CARM1, putative, expressed"	Medtr8g138750.1	Methyltransferase small 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1290.1.A1_at	A	A1TS	POPTR_0004s08450	POPTR_0004s08450 (11)	scaffold_4:6994766-6995291(+) (11)	NA	Q9LP77	Probable inactive receptor kinase At1g48480	AT1G48480.1	receptor-like kinase 1 	LOC_Os03g12250.1	"atypical receptor-like kinase MARK, putative, expressed"	Medtr5g085840.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1294.1.A1_at	A	A1TS	POPTR_0010s16620	POPTR_0010s16620 (9)	scaffold_10:15519501-15519985(-) (9)	NA	Q6DKC0	Erlin-2-B	AT2G03510.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os03g30790.1	"erlin-2 precursor, putative, expressed"	Medtr4g115350.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1297.1.S1_at	A	A1TS	POPTR_0014s16320	POPTR_0014s16320 (11)	scaffold_14:12413370-12413748(-) (11)	NA	NA	NA	AT3G07760.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os12g32992.1	expressed protein	Medtr5g104940.1	Sterile alpha motif homology 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1297.2.S1_a_at	A	A1TS	POPTR_0014s16320	POPTR_0014s16320 (11)	scaffold_14:12415122-12417038(-) (11)	NA	NA	NA	AT3G07760.2	Sterile alpha motif (SAM) domain-containing protein 	LOC_Os12g32992.1	expressed protein	Medtr5g104940.1	Sterile alpha motif homology 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1299.1.S1_at	A	A1TS	POPTR_0012s07020	POPTR_0012s07020 (11)	scaffold_12:7671401-7671950(-) (11)	NA	Q9LF80	Putative glycosyltransferase 3	AT5G07720.1	Galactosyl transferase GMA12/MNN10 family protein 	LOC_Os02g32750.2	"glycosyltransferase, putative, expressed"	Medtr8g138760.1	Galactosyl transferase 	NA	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0016021|integral to membrane
Ptp.13.1.S1_at	A	A1TS	POPTR_0015s00960	POPTR_0015s00960 (11)	scaffold_15:559694-560083(+) (11)	NA	Q84WW2	"Probable 6-phosphogluconolactonase 5, chloroplastic"	AT5G24400.1	NagB/RpiA/CoA transferase-like superfamily protein 	LOC_Os09g35970.1	"6-phosphogluconolactonase, putative, expressed"	Medtr3g123300.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1302.1.S1_at	A	A1TS	POPTR_0008s03860	POPTR_0008s03860 (11)	scaffold_8:2096849-2098261(+) (11)	NA	Q9GMB0	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	AT2G01720.1	Ribophorin I 	LOC_Os05g23600.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed"	Medtr1g120720.1	Ribophorin I 	GO:0006486|protein amino acid glycosylation	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005783|endoplasmic reticulum||GO:0016021|integral to membrane
Ptp.1303.1.S1_at	A	A1TS	POPTR_0016s06690	POPTR_0016s06690 (9)	scaffold_16:4508133-4508591(-) (9)	NA	NA	NA	AT2G35880.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os11g36340.1	"lymphoid organ expressed yellow head virus receptor protein, putative, expressed"	Medtr3g137120.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1305.1.S1_s_at	A	A1TS	POPTR_0008s13600	POPTR_0008s13600 (11)	scaffold_8:8959543-8959973(-) (11)	NA	P93711	Caffeoyl-CoA O-methyltransferase	AT1G67980.1	caffeoyl-CoA 3-O-methyltransferase 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
Ptp.1306.1.A1_at	A	A1TS	POPTR_0005s12850	POPTR_0005s12850 (11)	scaffold_5:9657952-9658178(+) (11)	NA	Q6NYS8	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	AT5G66680.1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein 	LOC_Os07g10830.1	"dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed"	NA	NA	GO:0018279|protein amino acid N-linked glycosylation via asparagine	GO:0004579|dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0005789|endoplasmic reticulum membrane||GO:0071212|subsynaptic reticulum
Ptp.1307.1.S1_at	A	A1TS	POPTR_0007s01160	POPTR_0007s01160 (11)	scaffold_7:623208-624713(+) (11)	NA	O49453	Uncharacterized protein At4g28440	AT4G28440.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1308.1.S1_at	A	A1TS	POPTR_0007s12250	POPTR_0007s12250 (11)	scaffold_7:12570299-12570675(-) (11)	NA	Q8L3R2	Probable calcium-binding protein CML41	AT3G50770.1	calmodulin-like 41 	LOC_Os01g72530.1	"OsCML31 - Calmodulin-related calcium sensor protein, expressed"	Medtr8g093890.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1309.1.A1_at	A	A1TS	POPTR_0014s13810	POPTR_0014s13810 (9)	scaffold_14:10098511-10100111(-) (9)	NA	O96622	Actin-related protein 2/3 complex subunit 1	AT2G30910.3	actin-related protein C1A 	LOC_Os02g57220.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g064430.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1311.1.S1_s_at	A	A1TS	POPTR_0018s06710	POPTR_0018s06710 (10)	scaffold_18:6759232-6760060(+) (10)	NA	P07314	Gamma-glutamyltranspeptidase 1	AT4G29210.1	gamma-glutamyl transpeptidase 4 	LOC_Os01g05810.1	"gamma-glutamyltranspeptidase 1 precursor, putative, expressed"	Medtr6g093830.1	Gamma-glutamyltranspeptidase 	NA	GO:0003840|gamma-glutamyltransferase activity	NA
Ptp.1312.1.S1_s_at	A	A1TS	POPTR_0009s01200	POPTR_0009s01200 (11)	scaffold_9:1381640-1381995(+) (11)	NA	Q9LFP3	Probable glycosyltransferase At5g11130	AT2G28110.1	Exostosin family protein 	LOC_Os03g01760.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.1314.1.S1_s_at	A	A1TS	POPTR_0010s15840	POPTR_0010s15840 (11)	scaffold_10:14950129-14950612(+) (11)	NA	Q96PB1	CAS1 domain-containing protein 1	AT3G06550.3	O-acetyltransferase family protein 	LOC_Os03g19970.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1315.1.S1_at	A	A1TS	POPTR_0010s19960	POPTR_0010s19960 (11)	scaffold_10:17713960-17714926(+) (11)	NA	O24412	Probable 26S proteasome non-ATPase regulatory subunit 7	AT3G11270.1	Mov34/MPN/PAD-1 family protein 	LOC_Os04g56646.1	"MEE34, putative, expressed"	Medtr3g093230.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1316.1.A1_s_at	A	A1TS	POPTR_0006s23820	POPTR_0006s23820 (11)	scaffold_6:22565455-22566164(+) (11)	NA	Q5JVF3	PCI domain-containing protein 2	AT2G19560.1	proteasome family protein 	LOC_Os09g21760.1	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1317.1.S1_s_at	A	A2TS	POPTR_0002s12570	POPTR_0002s12570 (11)//POPTR_0014s02550 (11)	scaffold_14:2130568-2131846(+) (11)//scaffold_2:9356569-9358103(+) (11)	NA	P42731	Polyadenylate-binding protein 2	AT1G49760.2	poly(A) binding protein 8 	LOC_Os08g22354.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
Ptp.1318.2.S1_s_at	A	A1TS	POPTR_0008s19950	POPTR_0008s19950 (11)	scaffold_8:13780882-13781133(-) (11)	NA	Q84MC0	Uncharacterized GPI-anchored protein At3g06035	AT3G06035.1	Glycoprotein membrane precursor GPI-anchored 	LOC_Os07g45060.1	"uncharacterized GPI-anchored protein At5g19240 precursor, putative, expressed"	Medtr5g005880.1	"Uncharacterized GPI-anchored protein At3g06035 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1319.1.A1_at	A	A1TS	POPTR_0016s07500	POPTR_0016s07500 (9)	scaffold_16:5382285-5382684(+) (9)	NA	Q851L5	IAA-amino acid hydrolase ILR1-like 3	AT3G02875.1	Peptidase M20/M25/M40 family protein 	LOC_Os03g62060.1	"hydrolase, putative, expressed"	Medtr3g122400.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.132.1.S1_at	A	A1TS	POPTR_0005s02780	POPTR_0005s02780 (11)	scaffold_5:1783839-1784419(-) (11)	NA	Q8W5S1	Cyclin-H1-1	AT5G27620.1	cyclin H;1 	LOC_Os03g52750.2	"cyclin, putative, expressed"	Medtr1g099610.1	Cyclin-like; ; ; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1321.1.A1_s_at	A	A2TS	POPTR_0009s07860	POPTR_0009s07860 (11)//POPTR_1135s00210 (11)	scaffold_1135:6693-6883(-) (11)//scaffold_9:7293300-7293490(-) (11)	NA	Q2N2K0	"Probable phytol kinase 3, chloroplastic"	AT5G58560.1	Phosphatidate cytidylyltransferase family protein 	LOC_Os01g61560.1	"phosphatidate cytidylyltransferase, putative, expressed"	NA	NA	NA	"GO:0016772|""transferase activity, transferring phosphorus-containing groups"""	GO:0016020|membrane
Ptp.1322.1.S1_at	A	A1TS	POPTR_0006s21070	POPTR_0006s21070 (11)	scaffold_6:20172384-20173320(-) (11)	NA	Q84W89	DEAD-box ATP-dependent RNA helicase 37	AT2G42520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g59050.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr3g105540.1	ATP-requiring DNA helicase RecQ; ; 	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1323.1.S1_at	A	A1TS	POPTR_0010s18360	POPTR_0010s18360 (9)	scaffold_10:16626181-16627112(+) (9)	NA	P50218	Isocitrate dehydrogenase [NADP]	AT1G65930.1	cytosolic NADP+-dependent isocitrate dehydrogenase 	LOC_Os05g49760.1	"dehydrogenase, putative, expressed"	Medtr2g080710.1	"Isocitrate dehydrogenase NADP-dependent, plant "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0000287|magnesium ion binding||GO:0051287|NAD or NADH binding"	NA
Ptp.1325.1.S1_s_at	A	A1TS	POPTR_0019s10170	POPTR_0019s10170 (11)	scaffold_19:11757479-11759082(+) (11)	POPTR_0013s10470 (6)	Q8BVQ5	Protein phosphatase methylesterase 1	AT4G10050.1	esterase/lipase/thioesterase family protein 	LOC_Os04g36620.2	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr5g008510.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1326.1.S1_s_at	A	A1TS	POPTR_0011s09050	POPTR_0011s09050 (11)	scaffold_11:11126560-11127041(+) (11)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1328.1.S1_at	A	A1MS	POPTR_0025s00340	POPTR_0025s00340 (9)	scaffold_25:112321-112842(-) (9)	NA	Q6AZB8	Putative nuclease HARBI1	AT1G72270.1	CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). 	LOC_Os04g55130.1	expressed protein	Medtr8g122260.1	"AGAP006957-PA, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1329.1.S1_s_at	A	A1TS	POPTR_0003s14550	POPTR_0003s14550 (11)	scaffold_3:14604041-14604850(-) (11)	NA	Q6N075	Major facilitator superfamily domain-containing protein 5	AT1G64650.1	Major facilitator superfamily protein 	LOC_Os03g02380.1	"major facilitator superfamily domain-containing protein 5, putative, expressed"	Medtr3g123410.1	Protein of unknown function DUF791 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.133.1.A1_at	A	A1TS	POPTR_0003s09540	POPTR_0003s09540 (11)	scaffold_3:10856170-10858269(+) (11)	NA	Q9ZWQ7	Defender against cell death 1	AT1G32210.1	Defender against death (DAD family) protein 	LOC_Os04g32550.1	"defender against cell death 1, putative, expressed"	Medtr3g026150.1	Defender against death DAD protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.133.1.A1_s_at	A	A2TS	POPTR_0001s01950	POPTR_0003s09540 (11)//POPTR_0001s01950 (11)	scaffold_1:1427427-1429329(-) (11)//scaffold_3:10856382-10858388(+) (11)	NA	Q9ZWQ7	Defender against cell death 1	AT2G35520.1	Defender against death (DAD family) protein 	LOC_Os04g32550.1	"defender against cell death 1, putative, expressed"	Medtr3g026150.1	Defender against death DAD protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1330.1.S1_at	A	A1TS	POPTR_0019s15220	POPTR_0019s15220 (9)	scaffold_19:15782263-15782805(-) (9)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0005515|protein binding||GO:0004871|signal transducer activity	NA
Ptp.1331.1.A1_at	A	A1TS	POPTR_0019s04580	POPTR_0019s04580 (9)	scaffold_19:4773724-4775183(+) (9)	NA	NA	NA	AT1G08530.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G09995.2); Has 140 Blast hits to 140 proteins in 53 species: Archae - 0; Bacteria - 63; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os12g24240.1	expressed protein	Medtr4g107840.1	"T27G7.21, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1336.1.S1_s_at	A	A1TS	POPTR_0005s07190	POPTR_0005s07190 (11)	scaffold_5:4836097-4838017(+) (11)	NA	Q39017	Diacylglycerol kinase 1	AT5G63770.1	diacylglycerol kinase 2 	LOC_Os12g12260.1	"diacylglycerol kinase 1, putative, expressed"	Medtr4g144130.1	"Diacylglycerol kinase accessory region; Diacylglycerol kinase, catalytic region; Protein kinase C, phorbol ester/diacylglycerol binding "	GO:0023033|signaling pathway||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0007242|intracellular signaling cascade||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1338.1.A1_at	A	A1TS	POPTR_0006s11690	POPTR_0006s11690 (11)	scaffold_6:8899450-8899898(-) (11)	NA	Q05609	Serine/threonine-protein kinase CTR1	AT5G03730.1	Protein kinase superfamily protein 	LOC_Os02g32610.3	"protein kinase domain containing protein, expressed"	Medtr3g149670.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1339.1.S1_s_at	A	A1TS	POPTR_0006s10530	POPTR_0006s10530 (11)	scaffold_6:7890728-7891199(-) (11)	NA	O80915	PRA1 family protein B4	AT2G38360.1	prenylated RAB acceptor 1.B4 	LOC_Os05g39670.1	"prenylated rab acceptor, putative, expressed"	Medtr5g090970.1	Prenylated rab acceptor PRA1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.134.2.S1_a_at	A	A1TS	POPTR_0005s10480	POPTR_0005s10480 (11)	scaffold_5:7532363-7533383(+) (11)	NA	O81788	WUSCHEL-related homeobox 13	AT4G35550.1	WUSCHEL related homeobox 13 	LOC_Os01g60270.2	"homeobox domain containing protein, expressed"	Medtr7g025190.1	Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.1340.1.A1_at	A	A1TS	POPTR_0016s14550	POPTR_0016s14550 (10)	scaffold_16:13741555-13742049(-) (10)	NA	Q9LZV3	"Mannan endo-1,4-beta-mannosidase 6"	AT5G01930.1	Glycosyl hydrolase superfamily protein 	LOC_Os05g25480.1	"OsMan06 - Endo-Beta-Mannanase, expressed"	Medtr8g005200.1	"Glycoside hydrolase, family 5 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1342.1.A1_at	A	A1TS	POPTR_0010s06250	POPTR_0010s06250 (11)	scaffold_10:7662463-7663227(-) (11)	NA	NA	NA	AT1G24460.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31570.1); Has 181008 Blast hits to 85359 proteins in 3551 species: Archae - 3290; Bacteria - 48304; Metazoa - 70793; Fungi - 13943; Plants - 10118; Viruses - 785; Other Eukaryotes - 33775 (source: NCBI BLink). 	LOC_Os02g38480.1	expressed protein	Medtr3g102910.1	"myosin-related, related "	GO:0016032|viral reproduction	NA	GO:0016020|membrane
Ptp.1344.1.A1_s_at	A	A1MS	POPTR_0001s29320	POPTR_0001s29320 (11)	scaffold_1:28037403-28037687(+) (11)	NA	Q9C5C8	"Peptide methionine sulfoxide reductase B2, chloroplastic"	AT4G21860.2	methionine sulfoxide reductase B 2 	LOC_Os05g33510.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr4g121860.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
Ptp.1346.1.A1_at	A	A1TS	POPTR_0008s02200	POPTR_0008s02200 (11)	scaffold_8:1054237-1054622(+) (11)	NA	Q99JF5	Diphosphomevalonate decarboxylase	AT3G54250.1	GHMP kinase family protein 	LOC_Os02g01920.1	"GHMP kinases ATP-binding protein, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.1348.1.S1_s_at	A	A1TS	POPTR_0011s16730	POPTR_0011s16730 (11)	scaffold_11:18510200-18511431(+) (11)	NA	Q5BQN5	WPP domain-associated protein (Fragment)	AT2G34730.1	myosin heavy chain-related 	LOC_Os09g04810.1	"myosin heavy chain-related, putative, expressed"	Medtr2g129750.1	"WPP domain associated protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1350.1.S1_at	A	A1TS	POPTR_0003s10680	POPTR_0003s10680 (10)	scaffold_3:11597128-11597636(+) (10)	NA	Q9FII5	Leucine-rich repeat receptor-like protein kinase TDR	AT5G61480.1	Leucine-rich repeat protein kinase family protein 	LOC_Os08g05290.1	"receptor-like protein kinase 5 precursor, putative, expressed"	Medtr7g117050.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1351.1.S1_a_at	A	A1TS	POPTR_0010s21340	POPTR_0010s21340 (11)	scaffold_10:18665561-18665851(+) (11)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1351.1.S1_at	A	A1TS	POPTR_0010s21340	POPTR_0010s21340 (11)	scaffold_10:18665849-18666043(+) (11)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1351.2.S1_at	A	A1TS	POPTR_0010s21340	POPTR_0010s21340 (11)	scaffold_10:18665876-18666352(+) (11)	NA	NA	NA	AT3G12570.4	FYD 	LOC_Os01g05790.1	"SLT1 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1353.1.A1_at	A	A1TS	POPTR_0007s14730	POPTR_0007s14730 (9)	scaffold_7:14491959-14492320(-) (9)	NA	NA	NA	NA	NA	NA	NA	Medtr8g102000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1355.1.S1_at	A	A1TS	POPTR_0003s13240	POPTR_0003s13240 (10)	scaffold_3:13636884-13637095(+) (10)	NA	NA	NA	AT1G63980.1	D111/G-patch domain-containing protein 	LOC_Os03g03390.1	"G-patch domain containing protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.1356.1.S1_s_at	A	A1TS	POPTR_0005s02610	POPTR_0005s02610 (11)	scaffold_5:1659263-1659484(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1359.1.A1_at	A	A1TS	POPTR_0002s19970	POPTR_0002s19970 (11)	scaffold_2:15903304-15903779(+) (11)	NA	P52424	"Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial"	AT3G55010.2	"phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) "	LOC_Os03g61600.1	"phosphoribosylformylglycinamidine synthase, putative, expressed"	Medtr4g143000.1	"Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "	NA	GO:0003824|catalytic activity	NA
Ptp.1359.2.S1_at	A	A1TS	POPTR_0002s19970	POPTR_0002s19970 (11)	scaffold_2:15900659-15901485(+) (11)	NA	P52424	"Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial"	AT3G55010.2	"phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) "	LOC_Os03g61600.1	"phosphoribosylformylglycinamidine synthase, putative, expressed"	Medtr4g143000.1	"Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria "	NA	GO:0003824|catalytic activity	NA
Ptp.136.1.S1_at	A	A1TS	POPTR_0002s14540	POPTR_0002s14540 (11)	scaffold_2:10804407-10805320(-) (11)	NA	Q8VYK7	Autophagy-related protein 8f	AT4G16520.2	Ubiquitin-like superfamily protein 	LOC_Os08g09240.2	"autophagy-related protein, putative, expressed"	Medtr8g105940.1	Light chain 3 (LC3) 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1360.1.S1_s_at	A	A1TS	POPTR_0010s16070	POPTR_0010s16070 (11)	scaffold_10:15124704-15124776(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1361.2.A1_at	A	A1TA	POPTR_0008s16160	POPTR_0008s16160 (11)	scaffold_8:10798312-10798711(+) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1361.3.S1_a_at	A	A1TS	POPTR_0008s16160	POPTR_0008s16160 (11)	scaffold_8:10798578-10800676(-) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1361.3.S1_s_at	A	A1TS	POPTR_0008s16160	POPTR_0008s16160 (11)	scaffold_10:9626130-9626222(+) (11)//scaffold_8:10798603-10798695(-) (11)	NA	P46279	DNA-directed RNA polymerase II subunit RPB7	AT4G14660.1	"RNA polymerase Rpb7-like, N-terminal domain "	LOC_Os05g06490.1	"RNA polymerase Rpb7, N-terminal domain containing protein, expressed"	Medtr1g089680.1	RNA binding S1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1365.1.S1_at	A	A1TS	POPTR_0002s12510	POPTR_0002s12510 (9)	scaffold_2:9298791-9299172(+) (9)	NA	Q42551	SUMO-conjugating enzyme SCE1	AT3G57870.1	sumo conjugation enzyme 1 	LOC_Os03g03130.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g016550.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.1366.1.A1_s_at	A	A1TS	POPTR_0009s01320	POPTR_0009s01320 (10)	scaffold_9:1589821-1590278(+) (10)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1366.2.S1_s_at	A	A1TS	POPTR_0009s01320	POPTR_0009s01320 (11)	scaffold_9:1585658-1585802(+) (11)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1366.3.S1_at	A	A1MS	POPTR_0009s01320	POPTR_0009s01320 (9)	scaffold_9:1585804-1585868(+) (9)	NA	Q9FJH6	ABC transporter F family member 1	AT5G60790.1	ABC transporter family protein 	LOC_Os08g45010.1	"ABC transporter, ATP-binding protein, putative, expressed"	AC235487_12.1	ABC transporter related AC235487.1 63491-67431 E EGN_Mt090430 200	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1367.1.A1_at	A	A1TS	POPTR_0004s14060	POPTR_0004s14060 (11)	scaffold_4:14531150-14531544(+) (11)	NA	NA	NA	AT4G18400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g39594.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1367.1.A1_s_at	A	A1TS	POPTR_0004s14060	POPTR_0004s14060 (11)	scaffold_4:14531356-14531761(+) (11)	NA	NA	NA	AT4G18400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os09g39594.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1368.1.A1_a_at	A	A1TS	POPTR_0003s15670	POPTR_0003s15670 (11)	scaffold_3:15431928-15432259(+) (11)	NA	Q9STE8	"Protein TOC75-3, chloroplastic"	AT3G46740.1	translocon at the outer envelope membrane of chloroplasts 75-III 	LOC_Os03g16440.1	"outer membrane protein, OMP85 family, putative, expressed"	Medtr4g084320.1	"Bacterial surface antigen (D15); Chloroplast envelope protein translocase, IAP75 "	NA	NA	GO:0019867|outer membrane
Ptp.137.1.S1_s_at	A	A1TS	POPTR_0002s18750	POPTR_0002s18750 (11)	scaffold_2:14618181-14618799(+) (11)	NA	Q9M1R4	Auxin-responsive protein IAA30	AT3G62100.1	indole-3-acetic acid inducible 30 	LOC_Os02g49160.1	"OsIAA8 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g133620.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1370.1.S1_at	A	A1TS	POPTR_0007s10940	POPTR_0007s10940 (9)	scaffold_7:11137959-11138036(-) (9)	NA	NA	NA	AT5G67070.1	ralf-like 34 	NA	NA	Medtr5g017130.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1370.1.S1_s_at	A	A1TS	POPTR_0007s10940	POPTR_0007s10940 (11)	scaffold_7:11137584-11137851(-) (11)	NA	NA	NA	AT5G67070.1	ralf-like 34 	NA	NA	Medtr5g017130.1	Rapid ALkalinization Factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1373.1.S1_s_at	A	A1TS	POPTR_0010s13760	POPTR_0010s13760 (11)	scaffold_10:13511235-13511774(+) (11)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	AC233660_2.1	Armadillo-like helical AC233660.2 13161-17702 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1376.1.S1_at	A	A1TS	POPTR_0016s08580	POPTR_0016s08580 (11)	scaffold_16:6399581-6399989(+) (11)	NA	Q1PER6	"L-ascorbate peroxidase 2, cytosolic"	AT3G09640.2	ascorbate peroxidase 2 	LOC_Os07g49400.2	"OsAPx2 - Cytosolic Ascorbate Peroxidase encoding gene 4,5,6,8, expressed"	Medtr4g080090.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.1377.1.S1_at	A	A1TS	POPTR_0002s08260	POPTR_0002s08260 (11)	scaffold_2:5749835-5751418(+) (11)	NA	Q43116	Protein disulfide-isomerase	AT1G77510.1	PDI-like 1-2 	LOC_Os11g09280.2	"OsPDIL1-1  protein disulfide isomerase PDIL1-1, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.1377.1.S1_x_at	A	A1TS	POPTR_0002s08260	POPTR_0002s08260 (11)	scaffold_2:5749835-5751418(+) (11)	NA	Q43116	Protein disulfide-isomerase	AT1G77510.1	PDI-like 1-2 	LOC_Os11g09280.2	"OsPDIL1-1  protein disulfide isomerase PDIL1-1, expressed"	Medtr2g110450.1	Disulphide isomerase; Thioredoxin-related; Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.1379.1.S1_a_at	A	A1TS	POPTR_0011s15080	POPTR_0011s15080 (11)	scaffold_11:17270057-17270091(+) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1379.1.S1_at	A	A1TS	POPTR_0011s15080	POPTR_0011s15080 (11)	scaffold_11:17270031-17270268(+) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1379.2.S1_s_at	A	A2TS	POPTR_0011s15080	POPTR_0011s15170 (11)//POPTR_0011s15080 (11)	scaffold_11:17269671-17269765(+) (11)//scaffold_11:17310940-17311034(-) (11)	NA	P30707	60S ribosomal protein L9	AT4G10450.1	Ribosomal protein L6 family 	LOC_Os02g01332.1	"ribosomal protein L6, putative, expressed"	Medtr5g077450.1	"Ribosomal protein L6, signature 2 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0019843|rRNA binding||GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.138.1.S1_s_at	A	A1TS	POPTR_0002s10880	POPTR_0002s10880 (11)	scaffold_2:7922806-7924371(-) (11)	NA	Q38827	Auxin-responsive protein IAA9	AT5G65670.2	indole-3-acetic acid inducible 9 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr8g078700.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1380.1.S1_at	A	A1TS	POPTR_0010s26060	POPTR_0010s26060 (11)	scaffold_10:21434328-21434558(-) (11)	NA	NA	NA	AT1G16790.1	ribosomal protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1381.1.S1_s_at	A	A1MS	POPTR_0002s12350	POPTR_0002s12350 (11)	scaffold_2:9167347-9167814(+) (11)	NA	Q9M7N6	MFP1 attachment factor 1	AT1G47200.1	WPP domain protein 2 	LOC_Os03g11060.1	"MFP1 attachment factor 1, putative, expressed"	Medtr1g023740.1	"MFP1 attachment factor 1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1383.1.A1_s_at	A	A1TS	POPTR_0002s03540	POPTR_0002s03540 (11)	scaffold_2:2200542-2200847(-) (11)	NA	Q55480	Uncharacterized sugar kinase slr0537	AT1G19600.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g01620.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1385.1.S1_s_at	A	A1TS	POPTR_0004s16260	POPTR_0004s16260 (9)	scaffold_4:16684121-16684153(+) (9)	NA	Q03878	Glycine-rich RNA-binding protein	AT2G21660.2	"cold, circadian rhythm, and rna binding 2 "	LOC_Os12g43600.1	"RNA recognition motif containing protein, expressed"	Medtr4g095740.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.1386.1.A1_at	A	A1TS	POPTR_0005s10980	POPTR_0005s10980 (11)	scaffold_5:7891072-7892235(+) (11)	NA	P54001	Prolyl 4-hydroxylase subunit alpha-1	AT5G66060.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os02g58070.1	"oxidoreductase, putative, expressed"	Medtr5g022950.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1387.1.S1_s_at	A	A1TS	POPTR_0006s20640	POPTR_0006s20640 (11)	scaffold_6:19662907-19663100(+) (11)	NA	P48631	"Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2"	AT3G12120.2	fatty acid desaturase 2 	LOC_Os02g48560.1	"fatty acid desaturase, putative, expressed"	Medtr7g111900.1	Fatty acid desaturase 	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.139.1.S1_at	A	A1TS	POPTR_0016s09090	POPTR_0016s09090 (11)	scaffold_16:6991769-6991940(+) (11)	NA	P43287	Aquaporin PIP2-2	AT2G37170.1	plasma membrane intrinsic protein 2 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.1390.1.S1_at	A	A1TS	POPTR_0001s34470	POPTR_0001s34470 (11)	scaffold_1:32588431-32588496(-) (11)	NA	Q940S5	Coatomer subunit zeta-1	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.1390.1.S1_s_at	A	A1TS	POPTR_0001s34470	POPTR_0001s34470 (11)	scaffold_1:32588572-32589561(-) (11)	NA	Q940S5	Coatomer subunit zeta-1	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.1391.1.S1_s_at	A	A1TS	POPTR_0016s05200	POPTR_0016s05200 (11)	scaffold_16:3162359-3162903(+) (11)	NA	NA	NA	AT2G42320.2	nucleolar protein gar2-related 	LOC_Os09g31230.2	expressed protein	Medtr7g111110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1392.1.S1_s_at	A	A1TS	POPTR_0004s16450	POPTR_0004s16450 (11)	scaffold_4:16910159-16910193(-) (11)	NA	P46301	40S ribosomal protein S25	AT4G39200.1	Ribosomal protein S25 family protein 	LOC_Os08g44480.1	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1393.1.S1_at	A	A1TS	POPTR_0001s30780	POPTR_0001s30780 (9)	scaffold_1:29241427-29244334(-) (9)	NA	NA	NA	AT2G15290.1	translocon at inner membrane of chloroplasts 21 	LOC_Os06g43130.1	"tic21, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1393.2.S1_s_at	A	A1TS	POPTR_0009s09920	POPTR_0009s09920 (11)	scaffold_9:8677733-8677804(-) (11)	NA	NA	NA	AT2G15290.1	translocon at inner membrane of chloroplasts 21 	LOC_Os06g43130.1	"tic21, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1397.1.S1_at	A	A1TS	POPTR_0009s13270	POPTR_0009s13270 (11)	scaffold_9:10611693-10612089(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT4G38740.1	rotamase CYP 1 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.1397.1.S1_s_at	A	A1TS	POPTR_0009s13270	POPTR_0009s13270 (11)	scaffold_9:10611705-10612108(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT4G38740.1	rotamase CYP 1 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.1398.1.S1_at	A	A1TS	POPTR_0010s21100	POPTR_0010s21100 (11)	scaffold_10:18510798-18511796(-) (11)	NA	P48495	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.1398.1.S1_s_at	A	A2TS	POPTR_0008s05640	POPTR_0010s21100 (11)//POPTR_0008s05640 (11)	scaffold_10:18511100-18512958(-) (11)//scaffold_8:3276949-3278938(+) (11)	NA	P48491	"Triosephosphate isomerase, cytosolic"	AT3G55440.1	triosephosphate isomerase 	LOC_Os01g05490.1	"triosephosphate isomerase, cytosolic, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0004807|triose-phosphate isomerase activity	NA
Ptp.140.1.S1_at	A	A1TS	POPTR_0013s05350	POPTR_0013s05350 (11)	scaffold_13:3826902-3830030(+) (11)	NA	O49044	Superoxide dismutase [Cu-Zn] 2	AT5G18100.1	copper/zinc superoxide dismutase 3 	LOC_Os03g11960.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr6g031060.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
Ptp.1400.1.S1_s_at	A	A1TS	POPTR_0010s16030	POPTR_0010s16030 (11)	scaffold_10:15101564-15101829(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1401.1.S1_s_at	A	A1TS	POPTR_0007s00470	POPTR_0007s00470 (11)	scaffold_7:177692-178180(-) (11)	NA	Q8LAC4	Probable uridine nucleosidase 2	AT1G05620.1	uridine-ribohydrolase  2 	LOC_Os03g31170.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr1g047060.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1403.1.A1_a_at	A	A1TS	POPTR_0001s35770	POPTR_0001s35770 (11)	scaffold_1:34118029-34118385(+) (11)	NA	Q6BSS5	Pre-rRNA-processing protein ESF2	AT3G56510.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g46760.1	"RNA recognition motif containing protein, putative, expressed"	Medtr6g022740.1	"Activator of basal transcription 1, putative "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1404.1.S1_at	A	A1TS	POPTR_0025s00670	POPTR_0025s00670 (11)	scaffold_25:336886-338172(-) (11)	NA	Q5DTI8	Extended synaptotagmin-3	AT1G05500.1	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os04g55220.1	"C2 domain containing protein, expressed"	Medtr8g121700.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1405.1.S1_at	A	A1TS	POPTR_0014s12320	POPTR_0014s12320 (11)	scaffold_14:9104849-9105555(+) (11)	NA	Q8LB72	Blue-light photoreceptor PHR2	AT2G47590.1	photolyase/blue-light receptor 2 	LOC_Os03g22330.1	"blue-light photoreceptor PHR2, putative, expressed"	Medtr1g108320.1	"DNA photolyase, FAD- binding N-terminal "	GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus	GO:0003913|DNA photolyase activity	NA
Ptp.1408.1.S1_s_at	A	A1TS	POPTR_0003s17700	POPTR_0003s17700 (11)	scaffold_3:17009454-17009566(+) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1408.2.S1_at	A	A1TS	POPTR_0003s17700	POPTR_0003s17700 (10)	scaffold_3:17003939-17009668(+) (10)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr1g068870.3	Lissencephaly type-1-like homology motif; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1409.2.S1_at	A	A1MS	POPTR_0001s30820	POPTR_0001s30820 (11)	scaffold_1:29268340-29269199(+) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT4G34200.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os04g55720.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
Ptp.1411.1.S1_at	A	A1TS	POPTR_0016s13210	POPTR_0016s13210 (11)	scaffold_16:12453319-12453382(+) (11)	NA	Q8VYK6	40S ribosomal protein S4-3	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	GO:0003723|RNA binding	NA
Ptp.1411.1.S1_x_at	A	A1TS	POPTR_0016s13210	POPTR_0016s13210 (11)	scaffold_16:12453264-12453382(+) (11)	NA	Q8VYK6	40S ribosomal protein S4-3	AT5G58420.1	Ribosomal protein S4 (RPS4A) family protein 	LOC_Os02g01560.1	"40S ribosomal protein S4, putative, expressed"	Medtr4g012030.1	Ribosomal protein S4E; RNA-binding S4; KOW; ; 	NA	GO:0003723|RNA binding	NA
Ptp.1412.1.A1_at	A	A1TA	POPTR_0015s13280	POPTR_0015s13280 (10)	scaffold_15:13302959-13304784(+) (11)	NA	NA	NA	AT3G22942.1	G-protein gamma subunit 2 	LOC_Os02g04520.1	"AGG2, putative, expressed"	Medtr1g083530.1	"AGG2, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1413.1.A1_at	A	A1TS	POPTR_0019s11320	POPTR_0019s11320 (11)	scaffold_19:12643025-12643392(-) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT1G71940.1	SNARE associated Golgi protein family 	LOC_Os03g49700.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1415.1.S1_at	A	A1TS	POPTR_0011s06980	POPTR_0011s06980 (11)	scaffold_11:7710792-7711171(-) (11)	NA	Q9FK68	Ras-related protein RABA1c	AT5G45750.1	RAB GTPase homolog A1C 	LOC_Os06g35814.1	"ras-related protein, putative, expressed"	Medtr2g091780.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1416.1.A1_s_at	A	A1TS	POPTR_0002s24960	POPTR_0002s24960 (11)	scaffold_1716:141-694(+) (9)//scaffold_2:22154781-22157152(+) (11)	NA	Q38936	FK506-binding protein 2-2	AT5G48580.1	FK506- and rapamycin-binding protein 15 kD-2 	LOC_Os01g68710.2	"peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed"	Medtr8g012730.1	"Peptidylprolyl isomerase, FKBP-type "	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	NA	NA
Ptp.1419.2.S1_s_at	A	A1TS	POPTR_0010s13520	POPTR_0010s13520 (11)	scaffold_10:13350736-13351683(+) (11)	NA	P51105	Dihydroflavonol-4-reductase	AT1G68540.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os01g03670.1	"dihydroflavonol-4-reductase, putative, expressed"	Medtr5g067120.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1420.1.S1_at	A	A1TS	POPTR_0017s03020	POPTR_0017s03020 (10)	scaffold_17:2188013-2188271(-) (10)	NA	NA	NA	AT3G03341.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1422.1.S1_s_at	A	A1TS	POPTR_0001s22110	POPTR_0001s22110 (11)	scaffold_1:20743817-20743960(+) (11)	NA	Q9S9K4	Aspartic proteinase-like protein 2	AT5G22850.1	Eukaryotic aspartyl protease family protein 	LOC_Os01g56930.1	"eukaryotic aspartyl protease domain containing protein, expressed"	Medtr1g074030.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1423.1.A1_at	A	A1TS	POPTR_0018s07650	POPTR_0018s07650 (11)	scaffold_18:8252940-8253265(-) (11)	NA	Q40468	Eukaryotic initiation factor 4A-15	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os02g05330.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1424.1.S1_s_at	A	A1TS	POPTR_0001s35630	POPTR_0001s35630 (11)	scaffold_1:33967140-33967265(-) (11)	NA	P51419	60S ribosomal protein L27-3	AT4G15000.1	Ribosomal L27e protein family 	LOC_Os10g41470.1	"60S ribosomal protein L27-3, putative, expressed"	Medtr4g089690.1	Ribosomal protein L27e; KOW 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1425.2.S1_s_at	A	A1TS	POPTR_0006s27030	POPTR_0006s27030 (11)	scaffold_6:25054912-25055628(-) (11)	NA	Q9SUI5	"Photosystem I reaction center subunit psaK, chloroplastic"	AT1G30380.1	photosystem I subunit K 	LOC_Os07g05480.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
Ptp.1429.1.S1_s_at	A	A1TS	POPTR_0009s16030	POPTR_0009s16030 (11)	scaffold_9:12276902-12277012(+) (11)	NA	O49884	60S ribosomal protein L30	AT1G36240.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.3	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1433.1.S1_at	A	A1TS	POPTR_0001s47020	POPTR_0001s47020 (11)	scaffold_1:47351725-47351779(+) (11)	NA	P36181	Heat shock cognate protein 80	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
Ptp.1433.1.S1_s_at	A	A1TS	POPTR_0001s47020	POPTR_0001s47020 (11)	scaffold_1:47351375-47351817(+) (11)	NA	P36181	Heat shock cognate protein 80	AT5G56000.1	HEAT SHOCK PROTEIN 81.4 	LOC_Os09g30412.1	"heat shock protein, putative, expressed"	Medtr5g104050.1	"ATP-binding region, ATPase-like "	NA	GO:0005524|ATP binding	NA
Ptp.1435.1.S1_at	A	A1TS	POPTR_0001s06710	POPTR_0001s06710 (11)	scaffold_1:5152292-5154159(-) (11)	NA	Q02366	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	AT3G12260.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os07g44650.1	"LYR motif containing protein, putative, expressed"	Medtr8g043640.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1435.1.S1_x_at	A	A1TS	POPTR_0001s06710	POPTR_0001s06710 (11)	scaffold_1:5151991-5154136(-) (11)	NA	Q02366	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6	AT3G12260.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os07g44650.1	"LYR motif containing protein, putative, expressed"	Medtr8g043640.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1439.1.S1_x_at	A	A1TS	POPTR_0019s08760	POPTR_0019s08760 (11)	scaffold_19:10296019-10298078(+) (11)	NA	NA	NA	NA	NA	LOC_Os07g48244.1	"ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1440.1.A1_s_at	A	A1TS	POPTR_0007s01700	POPTR_0007s01700 (11)	scaffold_7:989222-990292(+) (11)	NA	O24495	"Hydroxyacylglutathione hydrolase 1, mitochondrial"	AT2G43430.1	glyoxalase 2-1 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1441.1.S1_at	A	A1TS	POPTR_0002s13160	POPTR_0002s13160 (11)	scaffold_2:9787125-9788160(-) (11)	NA	Q28FY5	Transmembrane protein 147	AT1G47640.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2053, membrane (InterPro:IPR019164); Has 204 Blast hits to 204 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). "	LOC_Os03g55730.1	"SSA2 - 2S albumin seed storage family protein precursor, putative, expressed"	Medtr3g148750.1	"Transmembrane protein 147, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1443.1.S1_at	A	A1TS	POPTR_0010s11610	POPTR_0010s11610 (9)	scaffold_10:11808886-11809291(+) (9)	NA	Q9C9W9	Adagio protein 3	AT1G68050.1	"flavin-binding, kelch repeat, f box 1 "	LOC_Os11g34460.1	"OsFBO10 - F-box and other domain containing protein, expressed"	Medtr4g156890.1	"Cyclin-like F-box; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1447.1.S1_at	A	A1TS	POPTR_0002s02520	POPTR_0002s02520 (11)	scaffold_2:1426578-1428130(+) (11)	NA	NA	NA	AT1G75690.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os03g14040.3	expressed protein	Medtr1g030990.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1451.1.S1_at	A	A1TS	POPTR_0008s19280	POPTR_0008s19280 (11)	scaffold_8:13229510-13230940(-) (11)	NA	Q8YLP4	Menaquinone biosynthesis methyltransferase ubiE	AT1G23360.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g42870.2	"methyltransferase domain containing protein, putative, expressed"	Medtr5g035030.1	UbiE/COQ5 methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1453.1.A1_s_at	A	A1TS	POPTR_0010s08450	POPTR_0010s08450 (11)	scaffold_10:9361027-9361122(-) (11)	NA	NA	NA	AT4G14440.1	3-hydroxyacyl-CoA dehydratase 1 	LOC_Os05g45300.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr2g015150.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1459.1.A1_s_at	A	A1TS	POPTR_0012s12920	POPTR_0012s12920 (11)	scaffold_12:13284426-13284864(+) (11)	NA	Q9SRE5	Uncharacterized protein At1g76660	AT5G52430.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g57610.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.146.1.S1_at	A	A1TS	POPTR_0016s01450	POPTR_0016s01450 (9)	scaffold_16:655554-656049(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1460.1.S1_a_at	A	A1TS	POPTR_0008s20950	POPTR_0008s20950 (11)	scaffold_8:14984606-14984728(-) (11)	NA	B9RT03	UPF0497 membrane protein 4	AT4G15610.1	Uncharacterised protein family (UPF0497) 	LOC_Os07g26110.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g139640.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1460.1.S1_at	A	A1TS	POPTR_0008s20950	POPTR_0008s20950 (11)	scaffold_8:14984766-14985406(-) (11)	NA	B9RT03	UPF0497 membrane protein 4	AT4G15610.1	Uncharacterised protein family (UPF0497) 	LOC_Os07g26110.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr8g139640.1	Plant integral membrane protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1462.1.S1_s_at	A	A1TS	POPTR_0001s44140	POPTR_0001s44140 (11)	scaffold_1:44617825-44618731(+) (11)	NA	Q43312	Protein H2A.7	AT1G51060.1	histone H2A 10 	LOC_Os08g33100.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr2g096630.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.1462.3.S1_s_at	A	A2TS	POPTR_0016s00240	POPTR_0016s00240 (11)//POPTR_0006s00240 (10)	scaffold_16:22710-23037(-) (11)//scaffold_6:29005-29332(+) (10)	NA	Q40193	Ras-related protein Rab11C	AT1G07410.1	RAB GTPase homolog A2B 	LOC_Os03g60870.1	"ras-related protein, putative, expressed"	Medtr3g092520.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type; "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1463.2.S1_s_at	A	A1TA	POPTR_0013s13050	POPTR_0013s13050 (10)	scaffold_13:13619965-13620222(-) (10)	NA	Q9LT67	Transcription factor bHLH113	AT1G05710.5	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g41570.3	"ethylene-responsive protein related, putative, expressed"	Medtr4g128550.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1463.3.A1_s_at	A	A1TS	POPTR_0004s24420	POPTR_0004s24420 (9)	scaffold_4:23096807-23096839(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1464.2.S1_at	A	A1TS	POPTR_0004s11250	POPTR_0004s11250 (11)	scaffold_4:9870846-9870947(-) (11)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1464.2.S1_x_at	A	A1TS	POPTR_0004s11250	POPTR_0004s11250 (11)	scaffold_4:9870710-9870947(-) (11)	NA	P35685	60S ribosomal protein L7a	AT3G62870.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os09g32976.1	"ribosomal protein L7Ae, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1465.5.S1_x_at	A	A1TS	POPTR_0004s09910	POPTR_0004s09910 (11)	scaffold_4:8434095-8434611(-) (11)	NA	P24007	"Ribulose bisphosphate carboxylase small chain, chloroplastic"	AT1G67090.1	ribulose bisphosphate carboxylase small chain 1A 	LOC_Os12g19381.1	"ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed"	Medtr6g020290.1	"Ribulose bisphosphate carboxylase, small chain "	GO:0071704|organic substance metabolic process||GO:0015977|carbon fixation||GO:0008152|metabolic process	GO:0016984|ribulose-bisphosphate carboxylase activity	NA
Ptp.1466.1.S1_at	A	A1TS	POPTR_0006s06300	POPTR_0006s06300 (10)	scaffold_6:4502868-4503301(+) (10)	NA	O22060	Sucrose-phosphate synthase 1	AT5G20280.1	sucrose phosphate synthase 1F 	LOC_Os08g20660.2	"sucrose-phosphate synthase, putative, expressed"	Medtr8g121670.1	"Glycosyl transferase, group 1; Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria "	GO:0009058|biosynthetic process	NA	NA
Ptp.1468.1.S1_s_at	A	A2TS	POPTR_0008s16320	POPTR_0010s08580 (11)//POPTR_0008s16320 (11)	scaffold_10:9488172-9490369(+) (11)//scaffold_8:10935859-10938072(-) (11)	NA	Q8RY18	MATH domain-containing protein At5g43560	AT1G04300.1	TRAF-like superfamily protein 	LOC_Os12g40520.1	"MATH domain containing protein, expressed"	Medtr1g064840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.147.1.S1_at	A	A1TS	POPTR_0007s07470	POPTR_0007s07470 (11)	scaffold_7:5818414-5818691(-) (11)	NA	P57742	Probable prefoldin subunit 5	AT5G23290.1	prefoldin 5 	LOC_Os10g34670.1	"prefoldin, putative, expressed"	Medtr1g143760.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.1472.1.S1_at	A	A1TS	POPTR_0008s11120	POPTR_0008s11120 (10)	scaffold_8:7024970-7025070(-) (10)	NA	Q9CAA4	Transcription factor BIM2	AT1G69010.1	BES1-interacting Myc-like protein 2 	LOC_Os09g29930.2	"transcription factor BIM2, putative, expressed"	Medtr7g015360.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.1474.1.S1_at	A	A1TS	POPTR_0011s11540	POPTR_0011s11540 (10)	scaffold_11:14287918-14289767(-) (10)	NA	O49453	Uncharacterized protein At4g28440	AT2G33845.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os01g13700.1	"DNA-binding protein-related, putative, expressed"	Medtr2g017880.1	"Nucleic acid-binding, OB-fold, subgroup "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1475.1.S1_at	A	A1TS	POPTR_0008s15530	POPTR_0008s15530 (11)	scaffold_8:10308468-10308997(-) (11)	NA	O23714	Proteasome subunit beta type-2-A	AT3G22630.1	20S proteasome beta subunit D1 	LOC_Os03g48930.1	"peptidase, T1 family, putative, expressed"	Medtr5g007000.1	"20S proteasome, A and B subunits "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1476.1.S1_s_at	A	A1TS	POPTR_0018s02010	POPTR_0018s02010 (11)	scaffold_18:1809259-1809365(+) (11)	NA	Q8VY97	UPF0480 protein At4g32130	AT2G25310.1	Protein of unknown function (DUF2012) 	LOC_Os06g43650.2	"secreted salivary protein, putative, expressed"	Medtr3g137720.1	Carbohydrate-binding-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1477.1.S1_x_at	A	A1TS	POPTR_0011s13770	POPTR_0011s13770 (11)	scaffold_11:16430436-16430787(+) (11)	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os07g30640.1	"ubiquitin fusion protein, putative, expressed"	Medtr6g067240.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1477.2.S1_at	A	A1TA	POPTR_0017s06670	POPTR_0017s06670 (11)	scaffold_17:5113604-5113737(+) (11)	NA	NA	NA	AT4G15248.1	B-box type zinc finger family protein 	LOC_Os08g08120.1	"B-box zinc finger family protein, putative, expressed"	Medtr2g103560.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.148.1.S1_at	A	A1TS	POPTR_0008s05400	POPTR_0008s05400 (11)	scaffold_8:3119390-3119571(-) (11)	NA	P42747	Ubiquitin-conjugating enzyme E2 14	AT3G55380.1	ubiquitin-conjugating enzyme 14 	LOC_Os01g62244.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g078810.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.1481.1.S1_at	A	A1TS	POPTR_0006s27010	POPTR_0006s27010 (10)	scaffold_6:25036403-25036487(+) (10)	NA	NA	NA	AT5G25360.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32342.1). 	LOC_Os02g10720.1	expressed protein	Medtr4g005450.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1482.1.S1_s_at	A	A2TS	POPTR_0001s24330	POPTR_0474s00200 (11)//POPTR_0001s24330 (11)	scaffold_1:23644967-23645143(+) (11)//scaffold_474:1448-1624(-) (11)	NA	Q9FVI1	Actin-depolymerizing factor 2	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.1483.1.S1_at	A	A1TS	POPTR_0001s04110	POPTR_0001s04110 (10)	scaffold_1:3253595-3254215(+) (10)	NA	Q92177	Calpain-3	AT1G55350.4	calpain-type cysteine protease family 	LOC_Os02g47970.1	"calpain, putative, expressed"	Medtr4g137070.1	"Peptidase, cysteine peptidase active site; Concanavalin A-like lectin/glucanase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004198|calcium-dependent cysteine-type endopeptidase activity	GO:0005622|intracellular
Ptp.1487.1.A1_s_at	A	A1TS	POPTR_0009s04880	POPTR_0009s04880 (11)	scaffold_9:5110596-5111348(-) (11)	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1487.2.S1_at	A	A1MS	POPTR_0009s04880	POPTR_0009s04880 (10)	scaffold_9:5110594-5110706(-) (10)	NA	NA	NA	AT2G29670.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g63620.1	expressed protein	Medtr5g089500.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1488.1.S1_a_at	A	A1TS	POPTR_0014s14790	POPTR_0014s14790 (11)	scaffold_14:10863037-10863548(-) (11)	NA	P19892	Ras-related protein ARA-1	AT2G31680.1	RAB GTPase homolog A5D 	LOC_Os08g41340.1	"ras-related protein, putative, expressed"	Medtr7g046180.1	"Ras-related protein ARA-1, putative "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1489.2.S1_s_at	A	A3TS	POPTR_0005s21570	POPTR_0005s21570 (11)//POPTR_0005s21590 (11)//POPTR_0005s21600 (11)	scaffold_5:20691238-20691276(+) (11)//scaffold_5:20704594-20704632(+) (11)//scaffold_5:20711277-20711315(+) (11)	NA	P37219	Abscisic stress-ripening protein 2	NA	NA	LOC_Os01g72900.1	"abscisic stress-ripening, putative, expressed"	NA	NA	GO:0006950|response to stress	NA	NA
Ptp.149.1.S1_a_at	A	A2TS	POPTR_0016s13450	POPTR_0016s13450 (11)//POPTR_0064s00280 (11)	scaffold_16:12608248-12609068(-) (11)//scaffold_64:89029-89850(+) (11)	NA	Q76BK2	Macrophage migration inhibitory factor	AT5G01650.1	Tautomerase/MIF superfamily protein 	LOC_Os12g01680.1	"macrophage migration inhibitory factor, putative"	Medtr8g129750.1	Macrophage migration inhibitory factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1490.1.S1_at	A	A1TS	POPTR_0014s01910	POPTR_0014s01910 (10)	scaffold_14:1738097-1738276(+) (10)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1490.1.S1_s_at	A	A1TS	POPTR_0014s01910	POPTR_0014s01910 (11)	scaffold_14:1737816-1738165(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1491.1.S1_s_at	A	A1TS	POPTR_0003s09530	POPTR_0003s09530 (9)	scaffold_3:10844596-10844836(+) (9)	NA	NA	NA	AT1G32230.1	WWE protein-protein interaction domain protein family 	LOC_Os10g42710.1	"RCD1, putative, expressed"	Medtr5g033580.1	WWE 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1492.1.S1_s_at	A	A1TS	POPTR_0010s01700	POPTR_0010s01700 (11)	scaffold_10:1892082-1892125(+) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.1492.1.S1_x_at	A	A1TS	POPTR_0010s01700	POPTR_0010s01700 (11)	scaffold_10:1891555-1892297(+) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.1492.2.S1_x_at	A	A1TS	POPTR_0010s01700	POPTR_0010s01700 (11)	scaffold_10:1891483-1892236(+) (11)	NA	Q9ZSW9	Translationally-controlled tumor protein homolog	AT3G16640.1	translationally controlled tumor protein 	LOC_Os11g43900.1	"translationally-controlled tumor protein, putative, expressed"	Medtr1g099890.1	Translationally controlled tumor protein 	NA	NA	GO:0005737|cytoplasm
Ptp.1494.1.S1_s_at	A	A1TS	POPTR_0001s32250	POPTR_0001s32250 (11)	scaffold_1:30651019-30651274(-) (11)	NA	Q9SVQ0	Ethylene-responsive transcription factor ERF062	AT4G13620.1	Integrase-type DNA-binding superfamily protein 	LOC_Os03g09170.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr1g111860.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.1496.1.S1_s_at	A	A1TS	POPTR_0004s22740	POPTR_0004s22740 (11)	scaffold_4:21613802-21614210(+) (11)	NA	Q9NUJ3	T-complex protein 11-like protein 1	AT1G22930.1	T-complex protein 11 	LOC_Os04g35840.1	"T-complex protein 11, putative, expressed"	Medtr2g006270.1	"Aminotransferase, class-II; T-complex 11 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1497.1.S1_s_at	A	A1TS	POPTR_0014s11000	POPTR_0014s11000 (11)	scaffold_14:8195607-8195704(-) (11)	NA	A9P822	S-adenosylmethionine synthase 1	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.1497.2.S1_x_at	A	A2TS	POPTR_0002s19000	POPTR_0274s00200 (11)//POPTR_0002s19000 (11)	scaffold_2:14899437-14899978(-) (11)//scaffold_274:7467-8274(-) (11)	NA	A9P822	S-adenosylmethionine synthase 1	AT4G01850.2	S-adenosylmethionine synthetase 2 	LOC_Os01g22010.4	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.1498.1.A1_at	A	A1TS	POPTR_0001s37730	POPTR_0001s37730 (11)	scaffold_1:36797884-36798282(+) (11)	NA	Q8GY23	E3 ubiquitin-protein ligase UPL1	AT1G55860.1	ubiquitin-protein ligase 1 	LOC_Os09g07900.1	"ubiquitin-protein ligase 1, putative, expressed"	Medtr5g075640.1	"HECT; Ubiquitin interacting motif; UBA-like; DUF913, E3 ubiquitin ligase TOM1; "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process	GO:0016881|acid-amino acid ligase activity	GO:0005622|intracellular
Ptp.150.1.A1_at	A	A1TS	POPTR_0013s08340	POPTR_0013s08340 (11)	scaffold_13:7414947-7415061(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1500.1.A1_at	A	A1TS	POPTR_0009s13640	POPTR_0009s13640 (11)	scaffold_9:10824826-10825289(-) (11)	NA	P81393	Myb-related protein 308	AT4G38620.1	myb domain protein 4 	LOC_Os09g36730.1	"MYB family transcription factor, putative, expressed"	Medtr4g098680.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1501.1.A1_s_at	A	A2TS	POPTR_0007s13320	POPTR_0007s13320 (11)//POPTR_0007s13330 (11)	scaffold_7:13433270-13442797(+) (11)//scaffold_7:13442787-13452213(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G18193.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g51130.1	"mitochondrial chaperone BCS1, putative, expressed"	Medtr5g020890.1	"AAA ATPase, central region "	NA	GO:0005524|ATP binding	NA
Ptp.1502.1.S1_a_at	A	A1TS	POPTR_0016s05220	POPTR_0016s05220 (11)	scaffold_16:3179666-3179916(-) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g111060.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.1502.3.S1_a_at	A	A1TS	POPTR_0016s05220	POPTR_0016s05220 (11)	scaffold_16:3180332-3181750(-) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr7g111060.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.1504.2.S1_s_at	A	A1TS	POPTR_0004s04320	POPTR_0004s04320 (11)	scaffold_4:3089542-3090093(-) (11)	NA	Q42877	DNA-directed RNA polymerase II subunit RPB2	AT4G21710.1	DNA-directed RNA polymerase family protein 	LOC_Os03g44484.2	"DNA-directed RNA polymerase II subunit RPB2, putative, expressed"	Medtr1g028340.1	"RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1505.1.S1_a_at	A	A1TS	POPTR_0001s06700	POPTR_0001s06700 (11)	scaffold_1:5149892-5150573(+) (11)	NA	Q41558	Transcription factor HBP-1b(c1) (Fragment)	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr8g043600.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.1507.1.S1_s_at	A	A1TS	POPTR_0003s08940	POPTR_0003s08940 (11)	scaffold_3:10234147-10234563(+) (11)	NA	P54672	AP-2 complex subunit mu	AT5G46630.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os02g46510.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g014510.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.1508.1.A1_s_at	A	A1TS	POPTR_0016s05020	POPTR_0016s05020 (11)	scaffold_16:3052548-3053226(-) (11)	NA	Q8C1A9	Uncharacterized protein C4orf29 homolog	AT3G12150.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2048 (InterPro:IPR019149); Has 421 Blast hits to 334 proteins in 155 species: Archae - 2; Bacteria - 147; Metazoa - 215; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). 	LOC_Os02g10160.1	"AGAP003371-PA, putative, expressed"	Medtr7g111340.1	"Uncharacterized protein C4orf29 precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1510.1.S1_s_at	A	A1TS	POPTR_0014s14740	POPTR_0014s14740 (11)	scaffold_14:10824558-10824834(+) (11)	NA	Q8W453	Putative lipid-transfer protein DIR1	AT5G48490.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os07g18750.1	"LTPL42 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g045700.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1511.1.S1_at	A	A1TS	POPTR_0002s04910	POPTR_0002s04910 (11)	scaffold_2:3158472-3158559(-) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	NA	GO:0005515|protein binding	NA
Ptp.1511.1.S1_s_at	A	A2TS	POPTR_0002s04910	POPTR_0002s04910 (11)//POPTR_1438s00200 (11)	scaffold_1438:6242-6536(-) (11)//scaffold_2:3153608-3153902(-) (11)	NA	Q9ZQX6	ETO1-like protein 1	AT4G02680.1	ETO1-like 1 	LOC_Os11g37520.1	"BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed"	Medtr1g083820.1	"ETO1-like protein 1, putative "	NA	GO:0005515|protein binding	NA
Ptp.1512.1.S1_s_at	A	A1TS	POPTR_0019s08610	POPTR_0019s08610 (11)	scaffold_19:10115183-10115892(-) (11)	NA	O65333	Chalcone--flavonone isomerase	AT5G05270.2	Chalcone-flavanone isomerase family protein 	LOC_Os12g02370.3	"chalcone--flavonone isomerase, putative, expressed"	Medtr1g146220.1	Chalcone-flavanone isomerase 	GO:0042398|cellular amino acid derivative biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0016872|intramolecular lyase activity	NA
Ptp.1513.2.A1_a_at	A	A1TS	POPTR_0008s17980	POPTR_0008s17980 (11)	scaffold_8:12067016-12068011(-) (11)	NA	Q9FX53	Trihelix transcription factor GT-1	AT1G13450.1	Homeodomain-like superfamily protein 	LOC_Os04g40930.1	"MYB family transcription factor, putative, expressed"	Medtr3g103160.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1515.1.S1_a_at	A	A1TS	POPTR_0010s10140	POPTR_0010s10140 (11)	scaffold_10:10711015-10711208(+) (11)	NA	P46293	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1515.1.S1_x_at	A	A1TS	POPTR_0010s10140	POPTR_0010s10140 (11)	scaffold_10:10710939-10711198(+) (11)	NA	P46293	40S ribosomal protein S16	AT2G09990.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os12g03090.1	"ribosomal protein, putative, expressed"	Medtr4g156390.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1516.3.S1_s_at	A	A1TS	POPTR_0001s38470	POPTR_0001s38470 (11)	scaffold_1:37598490-37598751(+) (11)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G15050.1	IQ-domain 10 	LOC_Os06g06160.5	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr2g018800.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1518.1.A1_a_at	A	A1TS	POPTR_0003s04860	POPTR_0003s04860 (11)	scaffold_3:5901834-5903373(+) (11)	NA	Q9ZU11	Homeobox-leucine zipper protein ATHB-15	AT1G52150.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr8g015460.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.1518.2.S1_a_at	A	A1TS	POPTR_0003s04860	POPTR_0003s04860 (9)	scaffold_3:5901828-5903287(+) (9)	NA	Q9ZU11	Homeobox-leucine zipper protein ATHB-15	AT1G52150.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr8g015460.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.1519.1.S1_s_at	A	A1TS	POPTR_0001s38940	POPTR_0001s38940 (11)	scaffold_1:38195140-38195208(-) (11)	NA	Q9CQU8	Mitochondrial inner membrane protease subunit 1	AT1G53530.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os11g40500.3	"OsSigP7 - Putative Type I Signal Peptidase homologue; employs a putative Ser/Lys catalytic dyad, expressed"	Medtr8g043500.1	"Peptidase S24, S26A and S26B; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.152.1.S1_at	A	A1TS	POPTR_0002s07270	POPTR_0002s07270 (11)	scaffold_2:4972026-4972142(+) (11)	NA	NA	NA	AT1G48880.1	TRICHOME BIREFRINGENCE-LIKE 7 	LOC_Os01g65800.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr3g125130.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.153.1.S1_at	A	A1TS	POPTR_0011s10720	POPTR_0011s10720 (9)	scaffold_11:13302422-13302742(+) (9)	NA	Q9SYL9	"50S ribosomal protein L13, chloroplastic"	AT1G78630.1	Ribosomal protein L13 family protein 	LOC_Os01g54540.1	"ribosomal protein L13, putative, expressed"	Medtr3g106560.1	Ribosomal protein L13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.154.1.S1_at	A	A1TS	POPTR_0003s14880	POPTR_0003s14880 (9)	scaffold_3:14821399-14821871(-) (9)	NA	Q9SHE9	LOB domain-containing protein 4	AT1G31320.1	LOB domain-containing protein 4 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr4g114920.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.154.2.S1_at	A	A1MS	POPTR_0003s14880	POPTR_0003s14880 (11)	scaffold_3:14823114-14823483(-) (11)	NA	Q9SHE9	LOB domain-containing protein 4	AT1G31320.1	LOB domain-containing protein 4 	LOC_Os05g27980.1	"DUF260 domain containing protein, putative, expressed"	Medtr4g114920.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1540.1.S1_s_at	A	A1TS	POPTR_0012s06320	POPTR_0012s06320 (11)	scaffold_12:6661547-6661603(+) (11)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
Ptp.1540.3.S1_s_at	A	A1TS	POPTR_0012s06320	POPTR_0012s06320 (11)	scaffold_12:6660676-6661351(+) (11)	NA	Q9SIB9	"Aconitate hydratase 2, mitochondrial"	AT2G05710.1	aconitase 3 	LOC_Os08g09200.1	"aconitate hydratase protein, putative, expressed"	Medtr2g104020.1	"Aconitate hydratase, C-terminal; ; ; ; "	GO:0008152|metabolic process	NA	NA
Ptp.1542.1.S1_at	A	A3TS	POPTR_0014s01960	POPTR_0602s00200 (11)//POPTR_0014s01960 (11)//POPTR_0602s00210 (11)	scaffold_14:1753113-1753154(-) (11)//scaffold_602:3504-3545(+) (11)//scaffold_602:10807-10848(+) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1542.1.S1_s_at	A	A3TS	POPTR_0014s01960	POPTR_0602s00200 (11)//POPTR_0014s01960 (11)//POPTR_0602s00210 (11)	scaffold_14:1752867-1753227(-) (11)//scaffold_602:3431-3791(+) (11)//scaffold_602:10734-11094(+) (11)	NA	O74913	Uncharacterized protein C757.02c	AT4G24220.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1543.1.S1_at	A	A1TS	POPTR_0009s03320	POPTR_0009s03320 (11)	scaffold_9:3989528-3989763(+) (11)	NA	Q9FVI1	Actin-depolymerizing factor 2	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.1543.2.S1_s_at	A	A1TS	POPTR_0009s03330	POPTR_0009s03330 (11)	scaffold_9:3993247-3993380(+) (11)	NA	Q9FVI2	Actin-depolymerizing factor 1	AT5G59890.1	actin depolymerizing factor 4 	LOC_Os02g44470.1	"actin-depolymerizing factor, putative, expressed"	Medtr2g034250.1	"Actin-binding, cofilin/tropomyosin type "	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.1544.1.S1_x_at	A	A1TS	POPTR_0002s06680	POPTR_0002s06680 (11)	scaffold_2:4490796-4491402(-) (11)	POPTR_0005s21640 (7)	P35684	60S ribosomal protein L3	AT1G43170.8	ribosomal protein 1 	LOC_Os12g07010.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1544.2.S1_at	A	A1TS	POPTR_0005s21640	POPTR_0005s21640 (10)	scaffold_5:20749586-20750420(+) (10)	NA	P35684	60S ribosomal protein L3	AT1G43170.8	ribosomal protein 1 	LOC_Os12g07010.1	"ribosomal protein L3, putative, expressed"	Medtr1g124980.1	Translation factor 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1546.1.S1_at	A	A1TS	POPTR_0002s11150	POPTR_0002s11150 (10)	scaffold_2:8185525-8185951(-) (10)	NA	Q9LRH6	GATA transcription factor 25	AT4G24470.2	GATA-type zinc finger protein with TIFY domain 	LOC_Os06g48534.1	"GATA transcription factor 25, putative, expressed"	Medtr3g149710.1	"Zinc finger, GATA-type; ZIM; CCT "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.1547.1.S1_s_at	A	A1TS	POPTR_0013s03160	POPTR_0013s03160 (11)	scaffold_13:1923165-1925070(-) (11)	NA	P93258	Superoxide dismutase [Cu-Zn] 1	AT1G08830.2	copper/zinc superoxide dismutase 1 	LOC_Os03g22810.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr7g140060.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
Ptp.1548.1.S1_at	A	A1TS	POPTR_0001s20410	POPTR_0001s20410 (11)	scaffold_1:18368887-18370046(-) (11)	NA	Q84WC6	Ubiquitin carboxyl-terminal hydrolase 7	AT3G21280.1	ubiquitin-specific protease 7 	LOC_Os01g36930.1	"ubiquitin carboxyl-terminal hydrolase 6, putative, expressed"	AC235757_28.1	"Ubiquitin; Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 AC235757.1 83788-89694 E EGN_Mt090430 200"	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.1549.1.S1_at	A	A1TS	POPTR_0008s15950	POPTR_0008s15950 (11)	scaffold_8:10641738-10642080(+) (11)	NA	Q43117	"Pyruvate kinase isozyme A, chloroplastic"	AT3G22960.1	Pyruvate kinase family protein 	LOC_Os07g08340.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.155.1.S1_at	A	A1TS	POPTR_0001s30160	POPTR_0001s30160 (11)	scaffold_1:28709560-28710890(-) (11)	NA	O80977	Vacuolar-sorting receptor 3	AT2G14740.2	vaculolar sorting receptor 3 	LOC_Os10g20630.1	"vacuolar-sorting receptor precursor, putative, expressed"	Medtr5g005280.1	"Protease-associated PA; Growth factor, receptor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1550.1.S1_at	A	A1TS	POPTR_0010s08880	POPTR_0010s08880 (11)	scaffold_10:9662301-9662561(-) (11)	NA	Q38832	Auxin-responsive protein IAA14	AT4G14550.1	indole-3-acetic acid inducible 14 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1550.1.S1_x_at	A	A1TS	POPTR_0010s08880	POPTR_0010s08880 (11)	scaffold_10:9662301-9663159(-) (11)	NA	Q38832	Auxin-responsive protein IAA14	AT4G14550.1	indole-3-acetic acid inducible 14 	LOC_Os12g40890.1	"OsIAA30 - Auxin-responsive Aux/IAA gene family member, expressed"	Medtr1g117600.1	AUX/IAA protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	NA	GO:0005634|nucleus
Ptp.1551.1.S1_at	A	A1TS	POPTR_0001s22980	POPTR_0001s22980 (11)	scaffold_1:22027545-22027628(-) (11)	NA	P93171	Calmodulin	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1551.1.S1_x_at	A	A1TS	POPTR_0001s22980	POPTR_0001s22980 (11)	scaffold_1:22027522-22027673(-) (11)	NA	P93171	Calmodulin	AT2G27030.3	calmodulin 5 	LOC_Os07g48780.1	"OsCam1-2 - Calmodulin, expressed"	Medtr5g095410.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1553.1.S1_a_at	A	A1TS	POPTR_0014s05450	POPTR_0014s05450 (11)	scaffold_14:4084841-4085312(-) (11)	POPTR_0014s05480 (7)	Q9FPT1	Ubiquitin carboxyl-terminal hydrolase 12	AT3G17380.1	TRAF-like family protein 	LOC_Os07g06950.1	"ubiquitin carboxyl-terminal hydrolase, putative, expressed"	Medtr8g005960.1	MATH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1555.1.S1_a_at	A	A2TS	POPTR_0003s03280	POPTR_0003s08320 (11)//POPTR_0003s03280 (11)	scaffold_3:3674123-3674483(-) (11)//scaffold_3:9705187-9705719(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1555.1.S1_at	A	A1TS	POPTR_0003s08320	POPTR_0003s08320 (11)	scaffold_3:9705019-9706826(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1555.1.S1_x_at	A	A1TS	POPTR_0003s08320	POPTR_0003s08320 (11)	scaffold_3:9705019-9706826(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1555.2.A1_at	A	A1TS	POPTR_0003s03280	POPTR_0003s03280 (11)	scaffold_3:3673940-3675222(-) (11)	NA	Q9ZRS8	60S ribosomal protein L37a	AT3G10950.1	Zinc-binding ribosomal protein family protein 	LOC_Os05g48320.1	"60S ribosomal protein L37a, putative, expressed"	Medtr8g109040.1	Ribosomal L37ae protein; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1556.1.A1_at	A	A1TS	POPTR_0006s01080	POPTR_0006s01080 (11)	scaffold_6:612132-612828(+) (11)	NA	A5PKH3	Fumarylacetoacetase	AT1G12050.1	"fumarylacetoacetase, putative "	LOC_Os02g10310.1	"fumarylacetoacetase, putative, expressed"	Medtr2g029700.1	Fumarylacetoacetase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0009072|aromatic amino acid family metabolic process	GO:0004334|fumarylacetoacetase activity	NA
Ptp.1557.2.S1_s_at	A	A1TS	POPTR_0003s09400	POPTR_0003s09400 (11)	scaffold_3:10689156-10692618(-) (11)	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr8g077680.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
Ptp.1558.1.S1_at	A	A1TS	POPTR_0001s32170	POPTR_0001s32170 (11)	scaffold_1:30588011-30588150(+) (11)	NA	Q9FKC0	60S ribosomal protein L13a-4	AT5G48760.2	Ribosomal protein L13 family protein 	LOC_Os03g54890.1	"ribosomal protein L13, putative, expressed"	Medtr5g091220.1	"Ribosomal protein L13, archea and eukaryotic form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1559.1.S1_s_at	A	A2TS	POPTR_0016s07730	POPTR_0016s07770 (11)//POPTR_0016s07730 (11)	scaffold_16:5578353-5579012(-) (11)//scaffold_16:5601163-5601822(+) (11)	NA	Q9FLF0	40S ribosomal protein S9-2	AT5G39850.1	Ribosomal protein S4 	LOC_Os11g38959.1	"40S ribosomal protein S9-2, putative, expressed"	Medtr3g012940.1	Ribosomal protein S4 	NA	GO:0019843|rRNA binding	GO:0005622|intracellular
Ptp.1560.1.S1_at	A	A1TS	POPTR_0008s08410	POPTR_0008s08410 (10)	scaffold_8:5211762-5212169(-) (10)	NA	Q42961	"Phosphoglycerate kinase, chloroplastic"	AT3G12780.1	phosphoglycerate kinase 1 	LOC_Os05g41640.2	"phosphoglycerate kinase protein, putative, expressed"	Medtr2g077510.1	Phosphoglycerate kinase; ; 	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis	GO:0004618|phosphoglycerate kinase activity	NA
Ptp.1562.2.S1_a_at	A	A1TS	POPTR_0004s01560	POPTR_0004s01560 (11)	scaffold_4:925963-926328(-) (11)	NA	NA	NA	AT1G11700.1	"Protein of unknown function, DUF584 "	LOC_Os01g64300.1	"DUF584 domain containing protein, putative, expressed"	Medtr8g146700.1	Protein of unknown function DUF584 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1563.2.S1_s_at	A	A3TS	POPTR_0014s05270	POPTR_0403s00200 (11)//POPTR_0014s05270 (11)//POPTR_0014s05290 (11)	scaffold_14:3990237-3990575(+) (11)//scaffold_14:4002126-4002464(+) (11)//scaffold_403:12892-13230(+) (11)	NA	Q9SD53	UPF0481 protein At3g47200	AT3G60470.1	Plant protein of unknown function (DUF247) 	LOC_Os12g29650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010620.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1568.1.S1_s_at	A	A1TS	POPTR_0017s02490	POPTR_0017s02490 (11)	scaffold_17:1805046-1805229(+) (11)	NA	Q39263	Zinc finger protein 4	AT1G66140.1	zinc finger protein 4 	LOC_Os03g13600.2	"ZOS3-07 - C2H2 zinc finger protein, expressed"	Medtr5g085190.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.157.1.S1_s_at	A	A1TS	POPTR_0022s00410	POPTR_0022s00410 (11)	scaffold_22:137169-137564(+) (11)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.1572.1.A1_at	A	A1TS	POPTR_0017s12040	POPTR_0017s12040 (11)	scaffold_17:12170963-12171344(-) (11)	NA	Q43847	"Granule-bound starch synthase 2, chloroplastic/amyloplastic"	AT3G01180.1	starch synthase 2 	LOC_Os10g30156.1	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.1573.1.S1_at	A	A1TS	POPTR_0010s08750	POPTR_0010s08750 (11)	scaffold_10:9607230-9607945(+) (11)	NA	P31674	40S ribosomal protein S15	AT5G09510.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1574.1.A1_at	A	A1TS	POPTR_0013s13520	POPTR_0013s13520 (11)	scaffold_13:13978696-13979063(-) (11)	NA	B9N2D0	UPF0497 membrane protein 10	AT1G03700.1	Uncharacterised protein family (UPF0497) 	LOC_Os05g15630.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr7g010370.1	Protein of unknown function DUF588 	NA	NA	GO:0016020|membrane
Ptp.1577.1.S1_at	A	A1TS	POPTR_0001s23420	POPTR_0001s23420 (10)	scaffold_1:22755674-22756152(-) (10)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT2G44500.1	O-fucosyltransferase family protein 	LOC_Os04g47520.2	"growth regulator related protein, putative, expressed"	Medtr3g031560.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1580.1.S1_x_at	A	A1TS	POPTR_0005s07340	POPTR_0005s07340 (10)	scaffold_5:5013656-5013727(+) (10)	NA	Q71H73	Histone H3.3	AT4G40030.2	Histone superfamily protein 	LOC_Os06g04030.1	"histone H3, putative, expressed"	Medtr1g028200.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.1582.1.A1_at	A	A1TS	POPTR_0001s35620	POPTR_0001s35620 (11)	scaffold_1:33956462-33956824(-) (11)	NA	Q9LY84	GDSL esterase/lipase At5g14450	AT5G14450.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os07g39750.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g104050.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.1583.2.S1_x_at	A	A1TS	POPTR_0006s19870	POPTR_0006s19870 (11)	scaffold_6:18879070-18880244(-) (11)	NA	Q9AXJ4	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
Ptp.1584.1.S1_x_at	A	A1TS	POPTR_0005s26080	POPTR_0005s26080 (11)	scaffold_5:24200053-24200579(+) (11)	POPTR_0005s26070 (6)	P27495	"Chlorophyll a-b binding protein 40, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1584.2.S1_s_at	A	A1TS	POPTR_0011s02770	POPTR_0011s02770 (11)	scaffold_11:2703644-2703751(+) (11)	NA	P27493	"Chlorophyll a-b binding protein 21, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1584.3.S1_x_at	A	A1TS	POPTR_0005s26070	POPTR_0005s26070 (11)	scaffold_5:24197614-24198001(-) (11)	NA	P27490	"Chlorophyll a-b binding protein 8, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1584.4.S1_x_at	A	A1TS	POPTR_0005s26080	POPTR_0005s26080 (11)	scaffold_5:24200043-24200553(+) (11)	POPTR_0005s26070 (7)	P27495	"Chlorophyll a-b binding protein 40, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os01g41710.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1585.1.S1_at	A	A1TS	POPTR_0003s05240	POPTR_0003s05240 (10)	scaffold_3:6480766-6480949(+) (10)	NA	NA	NA	AT1G15230.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 26 Blast hits to 26 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g009250.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1586.2.S1_a_at	A	A2TS	POPTR_0002s22690	POPTR_0014s13900 (11)//POPTR_0002s22690 (11)	scaffold_14:10165046-10165233(+) (11)//scaffold_2:19522129-19522316(-) (11)	NA	NA	NA	AT2G42610.2	Protein of unknown function (DUF640) 	LOC_Os01g61310.1	"DUF640 domain containing protein, putative"	Medtr2g111640.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1587.1.S1_s_at	A	A1TS	POPTR_0008s01820	POPTR_0008s01820 (11)	scaffold_8:860691-861014(+) (11)	NA	Q9LZ17	40S ribosomal protein S17-4	AT5G04800.4	Ribosomal S17 family protein 	LOC_Os03g01900.1	"40S ribosomal protein S17, putative, expressed"	AC146550_7.1	Ribosomal protein S17e AC146550.40 29233-28681 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1588.1.S1_s_at	A	A1TS	POPTR_0010s22950	POPTR_0010s22950 (11)	scaffold_10:19653365-19653414(-) (11)	NA	Q9SV31	Probable aquaporin PIP2-5	AT3G54820.1	plasma membrane intrinsic protein 2;5 	LOC_Os02g41860.2	"aquaporin protein, putative, expressed"	Medtr7g121470.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.1589.1.S1_x_at	A	A1TS	POPTR_0007s01660	POPTR_0007s01660 (10)	scaffold_7:957346-959251(+) (10)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1589.2.S1_x_at	A	A1TS	POPTR_0017s05460	POPTR_0017s05460 (9)	scaffold_17:4319017-4320949(+) (9)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.159.1.S1_at	A	A1TS	POPTR_0018s05410	POPTR_0018s05410 (9)	scaffold_18:4945173-4945240(-) (9)	NA	NA	NA	AT4G26060.1	Ribosomal protein L18ae family 	LOC_Os05g08854.1	expressed protein	Medtr8g021870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1591.1.S1_s_at	A	A1TS	POPTR_0009s13620	POPTR_0009s13620 (11)	scaffold_9:10813486-10813628(+) (11)	NA	O24030	Proteasome subunit alpha type-7	AT5G66140.1	proteasome alpha subunit D2 	LOC_Os08g43540.1	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1593.1.A1_at	A	A1TS	POPTR_0014s00900	POPTR_0014s00900 (11)	scaffold_14:816713-817201(-) (11)	NA	Q9VCY8	ADIPOR-like receptor CG5315	AT4G37680.2	heptahelical protein 4 	LOC_Os03g13040.1	"haemolysin-III, putative, expressed"	Medtr5g015420.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
Ptp.1593.1.A1_s_at	A	A1TS	POPTR_0014s00900	POPTR_0014s00900 (11)	scaffold_14:816842-817252(-) (11)	NA	Q9VCY8	ADIPOR-like receptor CG5315	AT4G37680.2	heptahelical protein 4 	LOC_Os03g13040.1	"haemolysin-III, putative, expressed"	Medtr5g015420.1	Hly-III related proteins 	NA	NA	GO:0016021|integral to membrane
Ptp.1595.1.A1_at	A	A1TS	POPTR_0010s10120	POPTR_0010s10120 (11)	scaffold_10:10684145-10685989(-) (11)	NA	C0LGI2	Probable LRR receptor-like serine/threonine-protein kinase At1g67720	AT3G05990.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g08610.1	"leucine-rich repeat family protein, putative, expressed"	Medtr1g132820.1	"Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, related "	NA	GO:0005515|protein binding	NA
Ptp.1596.1.A1_at	A	A1TS	POPTR_0003s21190	POPTR_0003s21190 (9)	scaffold_3:19445730-19446231(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134210.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0010277|chlorophyllide a oxygenase activity||GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity"	NA
Ptp.1599.1.A1_at	A	A1TS	POPTR_0009s12430	POPTR_0009s12430 (11)	scaffold_9:10142360-10142398(-) (11)	NA	Q54E04	Vacuolar proton translocating ATPase 100 kDa subunit	AT4G39080.1	vacuolar proton ATPase A3 	LOC_Os10g10500.1	"vacuolar ATP synthase 98 kDa subunit, putative, expressed"	Medtr4g096520.1	"V-type ATPase, 116 kDa subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.16.1.S1_at	A	A1TS	POPTR_0014s01740	POPTR_0014s01740 (11)	scaffold_14:1629155-1629391(-) (11)	NA	P31166	"Adenine phosphoribosyltransferase 1, chloroplastic"	AT1G27450.1	adenine phosphoribosyl transferase 1 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.16.1.S1_s_at	A	A1TS	POPTR_0014s01740	POPTR_0014s01740 (11)	scaffold_14:1629418-1630292(-) (11)	NA	P31166	"Adenine phosphoribosyltransferase 1, chloroplastic"	AT1G27450.1	adenine phosphoribosyl transferase 1 	LOC_Os07g30150.1	"phosphoribosyl transferase, putative, expressed"	Medtr5g012340.1	Phosphoribosyltransferase 	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.160.1.S1_x_at	A	A1TS	POPTR_0002s20570	POPTR_0002s20570 (11)	scaffold_2:16650669-16651008(-) (11)	NA	Q8NBZ7	UDP-glucuronic acid decarboxylase 1	AT3G62830.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g47700.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g108380.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1600.1.A1_s_at	A	A1TS	POPTR_0001s33890	POPTR_0001s33890 (11)	scaffold_1:32051644-32052385(-) (11)	NA	Q9FMT4	SWI/SNF complex component SNF12 homolog	AT5G14170.1	SWIB/MDM2 domain superfamily protein 	LOC_Os04g31320.1	"SWIB/MDM2 domain containing protein, expressed"	Medtr8g109310.1	SWIB/MDM2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1601.1.A1_at	A	A1TS	POPTR_0003s14260	POPTR_0003s14260 (11)	scaffold_3:14372393-14372895(-) (11)	NA	Q84TF5	RING-H2 zinc finger protein RHA4a	AT4G24015.1	RING/U-box superfamily protein 	LOC_Os02g35144.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g031670.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1602.1.S1_at	A	A1TS	POPTR_0005s27890	POPTR_0005s27890 (11)	scaffold_5:25353263-25354044(-) (11)	POPTR_0002s00520 (7)	Q8LF80	Cyclin-dependent kinase B2-1	AT1G76540.1	cyclin-dependent kinase B2;1 	LOC_Os08g40170.1	"cyclin-dependent kinase B2-1, putative, expressed"	Medtr1g090200.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1606.1.A1_at	A	A1TS	POPTR_0018s04060	POPTR_0018s04060 (11)	scaffold_18:3474606-3474961(-) (11)	NA	Q01085	Nucleolysin TIAR	AT1G17370.1	oligouridylate binding protein 1B 	LOC_Os08g40880.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g133100.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.1608.1.A1_at	A	A1TS	POPTR_0002s18590	POPTR_0002s18590 (11)	scaffold_2:14453676-14453981(-) (11)	NA	Q8RWN7	Protein phosphatase 2C 32	AT2G46920.2	Protein phosphatase 2C family protein 	LOC_Os03g25600.2	"protein phosphatase 2C, putative, expressed"	Medtr8g102940.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1609.1.A1_s_at	A	A1TS	POPTR_0004s13530	POPTR_0004s13530 (11)	scaffold_4:13818285-13818579(+) (11)	NA	Q9EPI1	Xylosyltransferase 1 (Fragment)	AT5G15050.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os12g44240.1	"N-acetylglucosaminyltransferase, putative, expressed"	Medtr8g119960.1	"Glycosyl transferase, family 14 "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.161.1.S1_at	A	A1TS	POPTR_0002s12130	POPTR_0002s12130 (11)	scaffold_2:9004320-9004703(+) (11)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g55350.1	"OsSub31 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1610.1.A1_a_at	A	A1TS	POPTR_0007s12370	POPTR_0007s12370 (11)	scaffold_7:12698373-12698428(+) (11)	NA	Q94A43	BES1/BZR1 homolog protein 2	AT1G75080.2	Brassinosteroid signalling positive regulator (BZR1) family protein 	LOC_Os07g39220.1	"BES1/BZR1 homolog protein, putative, expressed"	Medtr5g019470.1	"BZR1, transcriptional repressor "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1611.1.A1_at	A	A1TS	POPTR_0002s22380	POPTR_0002s22380 (11)	scaffold_2:19084306-19084768(-) (11)	NA	NA	NA	AT3G24740.2	Protein of unknown function (DUF1644) 	LOC_Os04g04010.1	expressed protein	Medtr7g065270.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1614.1.A1_at	A	A1TS	POPTR_0018s14730	POPTR_0018s14730 (10)	scaffold_18:14824770-14825113(-) (10)	NA	Q93Z08	"Glucan endo-1,3-beta-glucosidase 6"	AT5G58090.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g04670.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr8g133400.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1616.1.A1_s_at	A	A1TS	POPTR_0014s09050	POPTR_0014s09050 (11)	scaffold_14:6683324-6683950(-) (11)	NA	Q9M373	Arabinogalactan peptide 20	AT3G61640.1	arabinogalactan protein 20 	LOC_Os01g46850.1	expressed protein	Medtr3g124660.1	Protein of unknown function DUF1070 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1618.1.A1_at	A	A1TS	POPTR_0015s07500	POPTR_0015s07500 (11)	scaffold_15:8797560-8797969(+) (11)	NA	NA	NA	AT5G62550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). 	LOC_Os06g38960.2	expressed protein	Medtr8g112630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1619.1.S1_at	A	A1TS	POPTR_0005s25750	POPTR_0005s25750 (11)	scaffold_5:23955196-23956150(+) (11)	NA	Q9FXI5	Protein IQ-DOMAIN 32	AT1G19870.1	IQ-domain 32 	LOC_Os04g56740.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g028080.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.162.1.A1_at	A	A1TS	POPTR_0002s20260	POPTR_0002s20260 (11)	scaffold_2:16215073-16215815(+) (11)	NA	O81122	Ethylene receptor	AT2G40940.1	ethylene response sensor 1 	LOC_Os03g49500.2	"ethylene receptor, putative, expressed"	Medtr4g032240.1	"Response regulator receiver; ATP-binding region, ATPase-like "	GO:0007165|signal transduction||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005524|ATP binding||GO:0000155|two-component sensor activity	GO:0016020|membrane
Ptp.1621.3.S1_s_at	A	A1TS	POPTR_0019s08060	POPTR_0019s08060 (10)	scaffold_19:9424792-9426495(-) (10)	NA	Q6ZIB9	UPF0016 protein 4	AT5G36290.2	Uncharacterized protein family (UPF0016) 	LOC_Os08g41670.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr7g089540.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
Ptp.1622.1.A1_s_at	A	A1TS	POPTR_0007s10720	POPTR_0007s10720 (11)	scaffold_7:10763921-10764252(+) (11)	NA	Q93Y06	Probable inactive receptor kinase At5g67200	AT5G67200.1	Leucine-rich repeat protein kinase family protein 	LOC_Os04g55620.1	"receptor kinase, putative, expressed"	Medtr3g147310.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1623.1.S1_at	A	A1TS	POPTR_0019s01600	POPTR_0019s01600 (11)	scaffold_19:1413215-1413580(+) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT2G03200.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g37550.1	"aspartic proteinase nepenthesin-2 precursor, putative, expressed"	Medtr5g088120.1	"Peptidase aspartic, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1627.1.A1_s_at	A	A1TS	POPTR_0001s45780	POPTR_0001s45780 (9)	scaffold_1:46306048-46306615(+) (9)	NA	P53492	Actin-7	AT5G09810.1	actin 7 	LOC_Os11g06390.6	"actin, putative, expressed"	Medtr3g144140.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.1629.1.A1_s_at	A	A2TS	POPTR_0001s28070	POPTR_0009s07280 (11)//POPTR_0001s28070 (11)	scaffold_1:26872878-26872933(+) (11)//scaffold_9:6839520-6839575(+) (11)	NA	O81027	"Hydroxymethylglutaryl-CoA lyase, mitochondrial"	AT2G26800.1	Aldolase superfamily protein 	LOC_Os01g16350.2	"hydroxymethylglutaryl-CoA lyase, putative, expressed"	Medtr3g058650.1	Hydroxymethylglutaryl-coenzyme A lyase active site 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1631.1.S1_at	A	A1TS	POPTR_0002s12460	POPTR_0002s12460 (11)	scaffold_2:9245820-9246344(+) (11)	NA	Q9C626	F-box protein At1g47056	AT1G47056.1	VIER F-box proteine 1 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1631.2.A1_at	A	A1TA	POPTR_0002s12460	POPTR_0002s12460 (11)	scaffold_2:9246236-9246339(-) (11)	NA	Q9C626	F-box protein At1g47056	AT1G47056.1	VIER F-box proteine 1 	LOC_Os04g42670.1	"OsFBL19 - F-box domain and LRR containing protein, expressed"	Medtr1g023840.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1634.1.A1_at	A	A1TS	POPTR_0014s07960	POPTR_0014s07960 (11)	scaffold_14:5919521-5920282(+) (11)	NA	Q9FN69	Transcription factor GLABRA 3	AT5G41315.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os04g47040.1	"anthocyanin regulatory Lc protein, putative, expressed"	Medtr8g078570.1	Helix-loop-helix DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1635.1.S1_s_at	A	A1TS	POPTR_0006s08250	POPTR_0006s08250 (11)	scaffold_6:5987926-5988740(-) (11)	NA	Q43187	Soluble inorganic pyrophosphatase	AT3G53620.1	pyrophosphorylase 4 	LOC_Os05g02310.1	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr1g081230.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.1639.1.A1_at	A	A1TS	POPTR_0001s01930	POPTR_0001s01930 (11)	scaffold_1:1403212-1404402(-) (11)	NA	Q39639	"Glycerol-3-phosphate acyltransferase, chloroplastic"	AT1G32200.2	phospholipid/glycerol acyltransferase family protein 	LOC_Os10g42720.1	"acyltransferase, putative, expressed"	Medtr5g029110.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.164.1.S1_at	A	A1TS	POPTR_0017s11900	POPTR_0017s11900 (10)	scaffold_17:11866667-11867123(+) (10)	NA	Q9SB61	ZF-HD homeobox protein At4g24660	AT3G28917.1	mini zinc finger 2 	LOC_Os08g37400.1	"ZF-HD homeobox protein, putative, expressed"	Medtr3g046460.1	ZF-HD homeobox protein Cys/His-rich dimerisation region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1640.2.S1_s_at	A	A2TS	POPTR_0008s04040	POPTR_0010s22840 (11)//POPTR_0008s04040 (11)	scaffold_10:19607714-19608771(+) (11)//scaffold_8:2231260-2232343(-) (11)	NA	P57720	"Chorismate synthase, chloroplastic"	AT1G48850.1	"chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative "	LOC_Os03g14990.1	"chorismate synthase 2, chloroplast precursor, putative, expressed"	Medtr1g121140.1	Chorismate synthase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009073|aromatic amino acid family biosynthetic process	GO:0004107|chorismate synthase activity	NA
Ptp.1641.1.A1_at	A	A1TS	POPTR_0004s21200	POPTR_0004s21200 (11)	scaffold_4:20435117-20435732(+) (11)	NA	Q1E6U9	Protein transport protein SEC24	AT2G27460.1	sec23/sec24 transport family protein 	LOC_Os05g37120.1	"sec23/Sec24 zinc finger family protein, expressed"	Medtr8g011640.1	"Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich "	GO:0006888|ER to Golgi vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0030127|COPII vesicle coat
Ptp.1643.1.S1_s_at	A	A1TS	POPTR_0018s06400	POPTR_0018s06400 (11)	scaffold_18:6253252-6253467(+) (11)	NA	O48788	Probable inactive receptor kinase At2g26730	AT2G26730.1	Leucine-rich repeat protein kinase family protein 	LOC_Os01g42294.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g118800.1	Formate C-acetyltransferase glycine radical; Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1646.1.S1_a_at	A	A1TS	POPTR_0018s05760	POPTR_0018s05760 (11)	scaffold_18:5342983-5343274(+) (11)	NA	NA	NA	AT1G15260.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g158810.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1647.1.S1_at	A	A1TS	POPTR_0001s17120	POPTR_0001s17120 (11)	scaffold_1:13994427-13995110(+) (11)	NA	Q5RC30	Signal peptidase complex catalytic subunit SEC11C	AT1G52600.1	Peptidase S24/S26A/S26B/S26C family protein 	LOC_Os06g16260.1	"OsSigP5 - Putative Type I Signal Peptidase homologue; employs a putative Ser/His catalytic dyad, expressed"	Medtr2g126230.1	"Peptidase S24, S26A and S26B "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1650.1.A1_at	A	A1TS	POPTR_0008s02980	POPTR_0008s02980 (10)	scaffold_8:1570167-1570672(+) (10)	NA	NA	NA	AT1G22060.1	"LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 proteins in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). "	LOC_Os03g01710.1	expressed protein	Medtr1g074280.1	Prefoldin 	NA	NA	GO:0016020|membrane
Ptp.1651.1.A1_at	A	A1TS	POPTR_0007s15270	POPTR_0007s15270 (10)	scaffold_7:14861318-14862769(-) (10)	NA	Q8L4M1	WD repeat-containing protein DWA1	AT2G19430.1	DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 	LOC_Os09g19900.1	"WD domain, G-beta repeat domain containing protein, expressed"	AC233845_6.1	WD40-like AC233845.2 14214-12180 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1652.1.A1_at	A	A1TS	POPTR_0002s26090	POPTR_0002s26090 (11)	scaffold_2:23063490-23063909(-) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os06g21340.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr8g147730.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
Ptp.1652.2.S1_s_at	A	A1TS	POPTR_0002s26090	POPTR_0002s26090 (11)	scaffold_2:23064645-23065895(-) (11)	NA	Q9SFC6	Rho GDP-dissociation inhibitor 1	AT3G07880.1	Immunoglobulin E-set superfamily protein 	LOC_Os06g21340.1	"rho GDP-dissociation inhibitor 1, putative, expressed"	Medtr8g147730.1	RHO protein GDP dissociation inhibitor 	NA	GO:0005094|Rho GDP-dissociation inhibitor activity	GO:0005737|cytoplasm
Ptp.1653.1.A1_at	A	A1TS	POPTR_0004s10380	POPTR_0004s10380 (11)	scaffold_4:8912183-8912910(-) (11)	NA	Q9HGL3	Protein sum2	AT1G26110.2	decapping 5 	LOC_Os06g30060.2	expressed protein	Medtr1g118180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1655.1.A1_s_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (11)	scaffold_18:10253788-10254225(+) (11)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1655.3.A1_at	A	A1TS	POPTR_0018s09370	POPTR_0018s09370 (9)	scaffold_18:10245781-10246353(+) (9)	NA	Q8S8N9	Golgin candidate 1	AT2G19950.2	golgin candidate 1 	LOC_Os01g54119.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g155150.1	GC2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.166.1.S1_s_at	A	A1TS	POPTR_0002s15920	POPTR_0002s15920 (11)	scaffold_2:11859778-11860968(-) (11)	NA	P93788	Remorin	AT3G61260.1	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1660.1.A1_at	A	A1TS	POPTR_0014s05100	POPTR_0014s05100 (11)	scaffold_14:3889777-3889815(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.1	casein kinase II  beta chain 1 	LOC_Os10g41520.2	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.1661.1.S1_at	A	A1TS	POPTR_0016s09290	POPTR_0016s09290 (10)	scaffold_16:7296783-7296986(-) (10)	NA	Q8LJT8	TSL-kinase interacting protein 1	AT2G36960.3	TSL-kinase interacting protein 1 	LOC_Os03g13790.2	"myb/SANT domain protein, putative, expressed"	Medtr4g141280.1	"myb/SANT domain protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1662.1.A1_at	A	A1TS	POPTR_0002s15090	POPTR_0002s15090 (11)	scaffold_2:11187375-11188136(-) (11)	NA	NA	NA	AT5G42660.1	Protein of unknown function (DUF616) 	LOC_Os01g54530.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr1g025800.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1663.1.A1_s_at	A	A1TS	POPTR_0005s25260	POPTR_0005s25260 (11)	scaffold_5:23570881-23571203(+) (11)	NA	Q9SH88	Ribosome biogenesis regulatory protein homolog	AT2G37990.1	ribosome biogenesis regulatory protein (RRS1) family protein 	LOC_Os04g58830.1	"ribosome biogenesis regulatory protein, putative, expressed"	Medtr2g008920.1	Ribosomal biogenesis regulatory protein 	GO:0042254|ribosome biogenesis	NA	GO:0005634|nucleus
Ptp.1665.1.S1_s_at	A	A1TS	POPTR_0015s08040	POPTR_0015s08040 (11)	scaffold_15:9316859-9317091(-) (11)	NA	Q9T041	Microtubule-associated protein TORTIFOLIA1	AT5G62580.1	ARM repeat superfamily protein 	LOC_Os02g50640.1	"HEAT repeat family protein, putative, expressed"	Medtr5g037980.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1670.1.S1_at	A	A1TS	POPTR_0005s20670	POPTR_0005s20670 (11)	scaffold_5:19793797-19794121(-) (11)	NA	Q0WT31	Probable methyltransferase PMT25	AT2G34300.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1670.1.S1_s_at	A	A1TS	POPTR_0005s20670	POPTR_0005s20670 (11)	scaffold_5:19793520-19793808(-) (11)	NA	Q0WT31	Probable methyltransferase PMT25	AT2G34300.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g66110.2	"methyltransferase, putative, expressed"	Medtr3g143140.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1672.1.A1_a_at	A	A1TS	POPTR_0012s13080	POPTR_0012s13080 (11)	scaffold_12:13378036-13378105(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
Ptp.1672.1.A1_at	A	A1TS	POPTR_0012s13080	POPTR_0012s13080 (11)	scaffold_12:13376543-13377052(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
Ptp.1672.2.A1_at	A	A1MS	POPTR_0012s13080	POPTR_0012s13080 (11)	scaffold_12:13377720-13377994(-) (11)	NA	Q9CUS9	Signal peptide peptidase-like 3	AT4G33410.1	SIGNAL PEPTIDE PEPTIDASE-LIKE 1 	LOC_Os10g25360.2	"signal peptide peptidase domain containing protein, expressed"	Medtr1g126980.1	"Peptidase A22B, minor histocompatibility antigen H13 "	NA	GO:0004190|aspartic-type endopeptidase activity	GO:0016021|integral to membrane
Ptp.1674.1.A1_s_at	A	A1TS	POPTR_0005s08490	POPTR_0005s08490 (9)	scaffold_5:5899521-5899567(-) (9)	NA	P73627	Uncharacterized protein sll1770	AT5G64940.2	ABC2 homolog 13 	LOC_Os02g36570.1	"ABC1 family domain containing protein, putative, expressed"	Medtr3g144970.1	Protein kinase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1675.1.A1_at	A	A1TS	POPTR_0002s19550	POPTR_0002s19550 (10)	scaffold_184:26351-26759(-) (11)//scaffold_2:15521738-15522146(+) (11)//scaffold_2:15543508-15543910(+) (11)	NA	Q9C660	Proline-rich receptor-like protein kinase PERK10	AT4G02010.1	Protein kinase superfamily protein 	LOC_Os01g14932.1	"NAK-like ser/thr protein kinase, putative, expressed"	Medtr7g133110.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1676.1.A1_at	A	A1TS	POPTR_0005s05370	POPTR_0005s05370 (10)	scaffold_5:3551574-3553185(+) (10)	NA	Q9SQZ9	UPF0424 protein At3g04780	AT3G04780.1	Protein of unknown function (DUF1000) 	LOC_Os03g58130.1	"thioredoxin, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1677.1.A1_at	A	A1TS	POPTR_0008s23190	POPTR_0008s23190 (11)	scaffold_8:18498663-18498819(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G16850.1	Pectin lyase-like superfamily protein 	LOC_Os11g43750.1	"polygalacturonase, putative, expressed"	Medtr8g138460.1	"Glycoside hydrolase, family 28 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1681.1.A1_at	A	A1TS	POPTR_0008s04370	POPTR_0008s04370 (11)	scaffold_8:2453716-2455445(-) (11)	NA	Q54TH4	Golgi to ER traffic protein 4 homolog	AT5G63220.1	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). 	LOC_Os01g07100.1	expressed protein	Medtr1g121920.1	Protein of unknown function DUF410 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1682.1.A1_s_at	A	A1TS	POPTR_0011s07550	POPTR_0011s07550 (11)	scaffold_11:8383029-8383565(+) (11)	NA	NA	NA	AT1G29050.1	TRICHOME BIREFRINGENCE-LIKE 38 	LOC_Os01g46350.1	"proteins of unknown function domain containing protein, expressed"	Medtr2g019150.2	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1683.1.S1_a_at	A	A1TS	POPTR_0002s10990	POPTR_0002s10990 (11)	scaffold_2:8012121-8012403(-) (11)	NA	P50433	"Serine hydroxymethyltransferase, mitochondrial"	AT5G26780.1	serine hydroxymethyltransferase 2 	LOC_Os03g52840.1	"serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed"	Medtr5g032440.1	Glycine hydroxymethyltransferase; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006563|L-serine metabolic process||GO:0006544|glycine metabolic process	GO:0004372|glycine hydroxymethyltransferase activity	NA
Ptp.1686.1.A1_at	A	A1TS	POPTR_0001s44720	POPTR_0001s44720 (10)	scaffold_1:45145800-45146290(-) (10)	NA	Q59156	DNA polymerase I	AT1G50840.1	polymerase gamma 2 	LOC_Os08g07840.1	"PolI-like DNA polymerase, putative, expressed"	Medtr5g099430.1	"DNA-polymerase gamma A; Polynucleotidyl transferase, Ribonuclease H fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding||GO:0003887|DNA-directed DNA polymerase activity	NA
Ptp.1687.1.A1_at	A	A1TS	POPTR_0017s14120	POPTR_0017s14120 (9)	scaffold_17:14291900-14292269(-) (9)	NA	NA	NA	AT3G02420.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os01g42010.1	expressed protein	AC233572_11.1	hypothetical protein AC233572.2 52137-58374 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1688.2.A1_at	A	A1MA	POPTR_0013s03780	POPTR_0013s03780 (10)	scaffold_13:2444059-2444540(-) (10)	NA	NA	NA	AT5G28830.1	calcium-binding EF hand family protein 	LOC_Os03g14590.1	"calcium-binding EF hand family protein, putative, expressed"	Medtr7g140930.1	Calcium-binding EF-hand 	GO:0006810|transport	GO:0008519|ammonium transmembrane transporter activity	GO:0016020|membrane
Ptp.1690.1.A1_at	A	A1TS	POPTR_0009s07920	POPTR_0009s07920 (11)	scaffold_9:7330229-7330641(-) (11)	NA	C0LGU7	Probable LRR receptor-like serine/threonine-protein kinase At5g45840	AT5G45840.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr3g094640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.1691.1.S1_at	A	A1TS	POPTR_0005s00250	POPTR_0005s00250 (9)	scaffold_5:35121-35253(+) (9)	NA	Q8BG09	Transmembrane protein 184B	AT3G05940.1	Protein of unknown function (DUF300) 	LOC_Os03g61210.1	"domain of unknown function domain containing protein, expressed"	Medtr7g134570.1	Protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1692.1.A1_s_at	A	A1TS	POPTR_0009s06890	POPTR_0009s06890 (11)	scaffold_9:6560430-6560657(-) (11)	NA	P74516	Putative tRNA (cytidine/uridine-2'-O-)-methyltransferase slr0992	AT5G26880.2	AGAMOUS-like 26 	LOC_Os08g39600.1	"RNA methyltransferase, TrmH family protein, putative, expressed"	Medtr3g030550.1	tRNA/rRNA methyltransferase (SpoU) 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0008173|RNA methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.1694.1.S1_s_at	A	A2TS	POPTR_0012s09710	POPTR_0012s09710 (11)//POPTR_0015s10480 (11)	scaffold_12:10666569-10666640(+) (11)//scaffold_15:11396305-11396376(+) (11)	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
Ptp.1694.2.S1_at	A	A1MS	POPTR_0015s10480	POPTR_0015s10480 (10)	scaffold_15:11396414-11396611(+) (10)	NA	Q9ULA0	Aspartyl aminopeptidase	AT5G60160.1	Zn-dependent exopeptidases superfamily protein 	LOC_Os12g13390.1	"aspartyl aminopeptidase, putative, expressed"	Medtr3g117320.1	"Peptidase M18, aminopeptidase I "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004177|aminopeptidase activity||GO:0008270|zinc ion binding	GO:0005773|vacuole
Ptp.1696.1.A1_at	A	A1TS	POPTR_0002s06970	POPTR_0002s06970 (11)	scaffold_2:4721523-4721920(+) (11)	NA	Q0IIH8	Protein FAM188A	AT1G43690.1	ubiquitin interaction motif-containing protein 	LOC_Os04g34440.1	"ubiquitin interaction motif-containing protein, putative, expressed"	Medtr1g125350.1	Ubiquitin interacting motif 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.17.1.S1_at	A	A1TS	POPTR_0001s35220	POPTR_0001s35220 (10)	scaffold_1:33517097-33517549(+) (10)	NA	Q9LK94	"Probable monodehydroascorbate reductase, cytoplasmic isoform 2"	AT3G27820.1	monodehydroascorbate reductase 4 	LOC_Os02g47800.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.170.1.S1_s_at	A	A1TS	POPTR_0014s05240	POPTR_0014s05240 (11)	scaffold_14:3976098-3976339(+) (11)	NA	Q67YI6	RING-H2 finger protein ATL65	AT5G45290.1	RING/U-box superfamily protein 	LOC_Os02g55520.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g122580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1701.1.S1_at	A	A1TS	POPTR_0007s12270	POPTR_0007s12270 (11)	scaffold_7:12588894-12588944(-) (11)	NA	Q9S7G2	Probable galacturonosyltransferase-like 2	AT3G50760.1	galacturonosyltransferase-like 2 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1701.1.S1_s_at	A	A1TS	POPTR_0007s12270	POPTR_0007s12270 (11)	scaffold_7:12588992-12589406(-) (11)	NA	Q9S7G2	Probable galacturonosyltransferase-like 2	AT3G50760.1	galacturonosyltransferase-like 2 	LOC_Os03g47530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr8g093870.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1705.1.A1_at	A	A1TS	POPTR_0011s13830	POPTR_0011s13830 (11)	scaffold_11:16464091-16464589(+) (11)	NA	P09607	Pectinesterase 2.1	AT1G11580.1	methylesterase PCR A 	LOC_Os01g57854.1	"pectinesterase, putative, expressed"	Medtr7g047030.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.1706.1.A1_a_at	A	A1TS	POPTR_0007s12560	POPTR_0007s12560 (11)	scaffold_7:12850777-12851163(+) (11)	NA	Q9M065	"Pentatricopeptide repeat-containing protein At4g36680, mitochondrial"	AT4G36680.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g42210.1	"membrane-associated salt-inducible protein like, putative, expressed"	Medtr2g126200.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1708.1.A1_at	A	A1TS	POPTR_0004s00560	POPTR_0004s00560 (11)	scaffold_4:213048-213182(+) (11)	NA	NA	NA	AT4G22190.1	unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). 	LOC_Os11g30430.1	expressed protein	Medtr2g029070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1711.1.A1_a_at	A	A1TS	POPTR_0008s13630	POPTR_0008s13630 (11)	scaffold_8:8972289-8973163(-) (11)	NA	Q8C1Y8	Vacuolar fusion protein CCZ1 homolog	AT1G16020.1	Protein of unknown function (DUF1712) 	LOC_Os08g33076.1	"myrosinase precursor, putative, expressed"	Medtr4g156530.1	"myrosinase precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1712.1.A1_at	A	A1TS	POPTR_0004s19420	POPTR_0004s19420 (10)	scaffold_4:19263847-19265487(+) (10)	NA	O23006	LysM domain-containing GPI-anchored protein 2	AT2G17120.1	lysm domain GPI-anchored protein 2 precursor 	LOC_Os09g37600.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	AC235671_7.1	Peptidoglycan-binding LysM AC235671.2 31615-27432 E EGN_Mt090430 200	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.1713.1.A1_at	A	A1TS	POPTR_0014s07180	POPTR_0014s07180 (10)	scaffold_14:5428319-5428457(-) (10)	NA	Q9ZPH9	Probable methyltransferase PMT15	AT4G00750.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g48230.2	"dehydration response related protein, putative, expressed"	Medtr7g083780.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1714.1.A1_a_at	A	A1TS	POPTR_0014s11300	POPTR_0014s11300 (11)	scaffold_14:8404904-8405035(-) (11)	NA	Q93W77	"NifU-like protein 1, chloroplastic"	AT4G01940.1	NFU domain protein 1 	LOC_Os03g20010.1	"nifU, putative, expressed"	Medtr7g133310.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
Ptp.1717.1.A1_at	A	A1TS	POPTR_0011s11720	POPTR_0011s11720 (9)	scaffold_11:14520843-14521373(+) (10)	NA	P0C7P8	Uncharacterized basic helix-loop-helix protein At1g06150	AT5G53900.2	Serine/threonine-protein kinase WNK (With No Lysine)-related 	LOC_Os11g25920.1	"transcription factor-related, putative, expressed"	Medtr1g023870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.172.1.S1_s_at	A	A1TS	POPTR_0009s06860	POPTR_0009s06860 (11)	scaffold_9:6547499-6548768(+) (11)	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr6g093440.1	Ribosomal protein L31e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1721.1.S1_at	A	A1TS	POPTR_0008s14360	POPTR_0008s14360 (11)	scaffold_8:9523258-9523531(+) (11)	NA	Q8L799	Inositol oxygenase 1	AT1G14520.2	myo-inositol oxygenase 1 	LOC_Os06g36560.2	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
Ptp.1721.1.S1_s_at	A	A1TS	POPTR_0008s14360	POPTR_0008s14360 (11)	scaffold_8:9523526-9524173(+) (11)	NA	Q8L799	Inositol oxygenase 1	AT1G14520.2	myo-inositol oxygenase 1 	LOC_Os06g36560.2	"inositol oxygenase, putative, expressed"	Medtr4g160310.1	Protein of unknown function DUF706 	GO:0044282|small molecule catabolic process||GO:0019310|inositol catabolic process||GO:0055114|oxidation reduction||GO:0044275|cellular carbohydrate catabolic process||GO:0044281|small molecule metabolic process	GO:0050113|inositol oxygenase activity||GO:0005506|iron ion binding	GO:0005737|cytoplasm
Ptp.1723.1.A1_s_at	A	A1TS	POPTR_0015s07200	POPTR_0015s07200 (11)	scaffold_15:8347937-8348356(-) (11)	NA	Q9FLQ7	Formin-like protein 20	AT5G07740.1	actin binding 	LOC_Os07g40510.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr5g026810.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1724.1.A1_s_at	A	A1TS	POPTR_0018s03740	POPTR_0018s03740 (11)	scaffold_18:3186943-3187955(-) (11)	NA	Q8L649	E3 ubiquitin ligase BIG BROTHER	AT5G24870.2	RING/U-box superfamily protein 	LOC_Os06g48040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr3g133350.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1726.1.S1_a_at	A	A1MS	POPTR_0002s11950	POPTR_0002s11950 (11)	scaffold_2:8849979-8850232(+) (11)	NA	Q9FHS6	F-box/kelch-repeat protein At5g43190	AT5G43190.1	Galactose oxidase/kelch repeat superfamily protein 	LOC_Os04g57290.1	"OsFBX153 - F-box domain containing protein, expressed"	Medtr1g023250.1	"Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1727.1.A1_s_at	A	A1TS	POPTR_0010s11630	POPTR_0010s11630 (11)	scaffold_10:11814163-11815932(-) (11)	NA	Q8LF21	Dynamin-related protein 1C	AT1G14830.1	DYNAMIN-like 1C 	LOC_Os03g50520.1	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.1729.1.A1_at	A	A1MS	POPTR_0002s20740	POPTR_0002s20740 (11)	scaffold_2:16826253-16828514(-) (11)	NA	Q505J9	ATPase family AAA domain-containing protein 1	AT1G02890.1	AAA-type ATPase family protein 	LOC_Os11g43970.1	"AAA-type ATPase family protein, putative, expressed"	Medtr1g108580.1	"Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central region; SMAD/FHA "	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.1734.2.A1_s_at	A	A1TS	POPTR_0018s12420	POPTR_0018s12420 (11)	scaffold_18:12910442-12910540(+) (11)	NA	Q96FX7	tRNA (adenine-N(1)-)-methyltransferase catalytic subunit TRMT61A	AT5G14600.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os04g25360.1	"tRNA methyltransferase complex GCD14 subunit, putative, expressed"	Medtr2g018150.1	tRNA methyltransferase complex GCD14 subunit 	GO:0044281|small molecule metabolic process||GO:0030488|tRNA methylation||GO:0044260|cellular macromolecule metabolic process	GO:0016429|tRNA (adenine-N1-)-methyltransferase activity	NA
Ptp.1735.1.S1_at	A	A1TS	POPTR_0002s13900	POPTR_0002s13900 (11)	scaffold_2:10308821-10310566(-) (11)	NA	Q9QZR0	E3 ubiquitin-protein ligase RNF25	AT3G60300.1	RWD domain-containing protein 	LOC_Os11g35870.1	"RWD domain containing protein, expressed"	Medtr5g027310.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1738.1.S1_s_at	A	A1TS	POPTR_0012s00670	POPTR_0012s00670 (11)	scaffold_12:370045-370564(-) (11)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.1739.1.A1_at	A	A1TS	POPTR_0010s00770	POPTR_0010s00770 (11)	scaffold_10:483481-483897(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G16850.1	Pectin lyase-like superfamily protein 	LOC_Os11g43750.1	"polygalacturonase, putative, expressed"	Medtr8g138460.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.174.1.S1_s_at	A	A1TS	POPTR_0003s15800	POPTR_0003s15800 (11)	scaffold_3:15495045-15495240(-) (11)	NA	Q41542	Probable xyloglucan endotransglucosylase/hydrolase	AT5G13870.1	xyloglucan endotransglucosylase/hydrolase 5 	LOC_Os11g33270.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr7g099560.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.1743.1.A1_a_at	A	A1TS	POPTR_0002s19960	POPTR_0002s19960 (11)	scaffold_2:15887159-15888406(-) (11)	NA	Q8KPU9	Arginyl-tRNA synthetase	AT4G26300.1	"Arginyl-tRNA synthetase, class Ic "	LOC_Os05g07030.1	"arginyl-tRNA synthetase, putative, expressed"	Medtr3g128230.1	DALR anticodon binding; 	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006420|arginyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0005524|ATP binding||GO:0004814|arginine-tRNA ligase activity	GO:0005737|cytoplasm
Ptp.1746.1.A1_at	A	A1TS	POPTR_0013s06350	POPTR_0013s06350 (11)	scaffold_13:4897734-4898214(+) (11)	NA	Q8S9K3	"Zinc finger protein VAR3, chloroplastic"	AT5G17790.1	zinc finger (Ran-binding) family protein 	LOC_Os01g59980.1	"zinc finger family protein, putative, expressed"	Medtr7g103850.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1750.1.S1_at	A	A1TS	POPTR_0001s02820	POPTR_0001s02820 (11)	scaffold_1:2230022-2231235(-) (11)	NA	Q40546	"Pyruvate kinase isozyme G, chloroplastic"	AT1G32440.1	plastidial pyruvate kinase 3 	LOC_Os10g42100.1	"pyruvate kinase, putative, expressed"	Medtr1g125800.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.1751.2.A1_at	A	A1TS	POPTR_0002s13960	POPTR_0002s13960 (9)	scaffold_2:10353951-10356039(+) (9)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.1751.2.A1_s_at	A	A1TS	POPTR_0002s13960	POPTR_0002s13960 (9)	scaffold_2:10355194-10355939(+) (9)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.1752.2.A1_s_at	A	A1TS	POPTR_0007s00290	POPTR_0007s00290 (11)	scaffold_7:76195-76824(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1753.1.A1_s_at	A	A1TS	POPTR_0005s21850	POPTR_0005s21850 (11)	scaffold_5:20910446-20910919(-) (11)	NA	Q8RXL8	Uncharacterized membrane protein At1g06890	AT4G09810.1	Nucleotide-sugar transporter family protein 	LOC_Os05g12490.1	"transporter-related, putative, expressed"	Medtr1g124720.1	Protein of unknown function DUF250 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1754.1.A1_s_at	A	A1TS	POPTR_0015s05690	POPTR_0015s05690 (11)	scaffold_15:6040644-6040698(-) (11)	NA	NA	NA	AT5G52870.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G64080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g12640.2	expressed protein	Medtr1g126380.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1755.1.S1_at	A	A1TS	POPTR_0004s14080	POPTR_0004s14080 (9)	scaffold_4:14566197-14566279(-) (9)	NA	Q38772	Cell division control protein 2 homolog A	AT3G48750.1	cell division control 2 	LOC_Os03g02680.2	"cyclin-dependent kinase A-1, putative, expressed"	AC235662_4.1	Protein kinase AC235662.1 26217-19399 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1757.1.A1_at	A	A1TS	POPTR_0010s14010	POPTR_0010s14010 (9)	scaffold_10:13707731-13708038(-) (9)	NA	Q9S7Y1	Transcription factor bHLH30	AT1G68810.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os03g15440.1	"basic helix-loop-helix, putative, expressed"	Medtr1g118050.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.1758.1.A1_at	A	A1TS	POPTR_0008s19180	POPTR_0008s19180 (10)	scaffold_8:13147686-13147970(+) (10)	NA	Q9BXS5	AP-1 complex subunit mu-1	AT1G60780.1	Clathrin adaptor complexes medium subunit family protein 	LOC_Os01g50770.1	"adaptor complexes medium subunit family domain containing protein, expressed"	Medtr5g034870.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.1759.1.A1_at	A	A1TS	POPTR_0010s16310	POPTR_0010s16310 (10)	scaffold_10:15284154-15286924(+) (10)	NA	Q55FJ0	Probable inactive serine/threonine-protein kinase lvsG	AT5G18525.1	protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases 	LOC_Os01g22390.2	"WD domain containing protein, putative, expressed"	Medtr3g149700.1	Beige/BEACH; Concanavalin A-like lectin/glucanase; WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.176.2.S1_a_at	A	A1TS	POPTR_0005s07380	POPTR_0005s07380 (11)	scaffold_5:5042115-5042766(+) (11)	NA	Q9M3V8	40S ribosomal protein S6	AT5G10360.1	Ribosomal protein S6e 	LOC_Os03g27260.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1762.1.A1_at	A	A1TS	POPTR_0001s45250	POPTR_0001s45250 (11)	scaffold_1:45755796-45756194(-) (11)	NA	Q84WP6	NAC domain-containing protein 43	AT2G46770.1	NAC (No Apical Meristem) domain transcriptional regulator superfamily protein 	LOC_Os08g02300.1	"no apical meristem protein, putative, expressed"	Medtr4g041220.1	No apical meristem (NAM) protein 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	NA
Ptp.1767.1.A1_s_at	A	A1TS	POPTR_0001s25500	POPTR_0001s25500 (11)	scaffold_1:24598930-24600150(+) (11)	NA	Q9N2I9	Mitochondrial uncoupling protein 3	AT5G58970.1	uncoupling protein 2 	LOC_Os11g48040.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g015290.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1768.1.A1_at	A	A1TS	POPTR_0002s13350	POPTR_0002s13350 (10)	scaffold_2:9909389-9910082(-) (10)	NA	Q9FZ70	F-box/FBD/LRR-repeat protein At1g13570	AT1G13570.1	F-box/RNI-like superfamily protein 	LOC_Os02g33400.1	"OsFBL9 - F-box domain and LRR containing protein, expressed"	Medtr1g025860.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1769.1.S1_at	A	A1TS	POPTR_0019s11500	POPTR_0019s11500 (10)	scaffold_19:12763912-12764855(+) (10)	NA	O78458	Uncharacterized protein ycf37	AT1G22700.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g32300.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1770.1.A1_at	A	A1TS	POPTR_0002s24710	POPTR_0002s24710 (11)	scaffold_2:21997637-21998147(-) (11)	NA	NA	NA	AT3G07210.1	unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). 	LOC_Os01g68830.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1771.1.A1_s_at	A	A1TS	POPTR_0012s12420	POPTR_0012s12420 (11)	scaffold_12:12754071-12754518(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G15740.1	O-fucosyltransferase family protein 	LOC_Os06g17390.1	"auxin-independent growth promoter protein, putative, expressed"	Medtr2g074450.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1773.1.A1_at	A	A1TS	POPTR_0019s13500	POPTR_0019s13500 (11)	scaffold_19:14417634-14418401(+) (11)	NA	Q9SKT3	Secretory carrier-associated membrane protein 1	AT2G20840.1	Secretory carrier membrane protein (SCAMP) family protein 	LOC_Os07g37740.1	"secretory carrier-associated membrane protein, putative, expressed"	Medtr2g014260.1	SCAMP 	GO:0015031|protein transport	NA	GO:0016021|integral to membrane
Ptp.1775.1.S1_at	A	A1TS	POPTR_0005s06280	POPTR_0005s06280 (11)	scaffold_5:4129719-4129987(-) (11)	NA	O15488	Glycogenin-2	AT3G18660.2	plant glycogenin-like starch initiation protein 1 	LOC_Os01g65780.2	"glycosyl transferase, putative, expressed"	Medtr3g143690.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.1777.1.S1_at	A	A1TS	POPTR_0005s22560	POPTR_0005s22560 (11)	scaffold_5:21478065-21478601(+) (11)	NA	Q9UP83	Conserved oligomeric Golgi complex subunit 5	AT1G67930.1	Golgi transport complex protein-related 	LOC_Os05g31490.1	"golgi transport complex protein-related, putative, expressed"	Medtr5g098500.1	"Golgi transport complex protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1779.1.S1_at	A	A1TS	POPTR_0011s09660	POPTR_0011s09660 (9)	scaffold_11:12051960-12053009(+) (9)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT5G55180.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1780.1.S1_at	A	A1TS	POPTR_0001s12940	POPTR_0001s12940 (11)	scaffold_1:10033218-10033662(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT1G27440.1	Exostosin family protein 	LOC_Os01g70200.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.1786.1.A1_at	A	A1TS	POPTR_0005s06180	POPTR_0005s06180 (9)	scaffold_5:4060793-4061221(+) (9)	NA	Q10058	UPF0673 membrane protein C1F5.03c	AT5G67290.1	FAD-dependent oxidoreductase family protein 	LOC_Os07g06080.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr8g087210.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1787.1.S1_s_at	A	A1TS	POPTR_0009s08850	POPTR_0009s08850 (11)	scaffold_9:7992385-7992870(-) (11)	NA	P33629	Tubulin alpha chain	AT1G50010.1	tubulin alpha-2 chain 	LOC_Os11g14220.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.1788.1.A1_at	A	A1TS	POPTR_0017s02010	POPTR_0017s02010 (9)	scaffold_17:1476014-1476444(+) (9)	NA	Q15751	Probable E3 ubiquitin-protein ligase HERC1	AT1G65920.1	Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain 	LOC_Os04g49430.1	"ZR1 protein, putative"	Medtr3g086740.1	"Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; Zinc finger, FYVE/PHD-type; Pleckstrin homology-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.179.1.A1_at	A	A1TS	POPTR_0001s40800	POPTR_0001s40800 (10)	scaffold_1:40402987-40403299(-) (11)	NA	O61122	Serine/threonine-protein kinase svkA	AT3G15220.1	Protein kinase superfamily protein 	LOC_Os07g32400.1	"STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.179.2.S1_s_at	A	A1TS	POPTR_0001s40800	POPTR_0001s40800 (11)	scaffold_1:40406015-40406935(-) (11)	POPTR_0011s11710 (6)	O61122	Serine/threonine-protein kinase svkA	AT3G15220.1	Protein kinase superfamily protein 	LOC_Os07g32400.1	"STE_PAK_Ste20_MST_like.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g047820.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.1790.1.S1_at	A	A1TS	POPTR_0002s05610	POPTR_0002s05610 (11)	scaffold_2:3683467-3684056(+) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT2G43040.1	tetratricopeptide repeat (TPR)-containing protein 	LOC_Os12g37780.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr5g026970.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1791.1.A1_at	A	A1TS	POPTR_0001s21670	POPTR_0001s21670 (11)	scaffold_1:20222599-20222822(-) (11)	NA	Q8BKU8	Transmembrane protein 87B	AT2G01070.1	Lung seven transmembrane receptor family protein 	LOC_Os11g34360.1	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr2g007860.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
Ptp.1794.1.S1_at	A	A1TS	POPTR_0010s19570	POPTR_0010s19570 (11)	scaffold_10:17462175-17463489(+) (11)	POPTR_0008s06890 (6)	Q9P6P3	Serine/threonine-protein kinase ppk15	AT2G40120.1	Protein kinase superfamily protein 	LOC_Os01g61620.1	"protein kinase family protein, putative, expressed"	Medtr5g090140.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1795.1.A1_at	A	A1TS	POPTR_0013s12990	POPTR_0013s12990 (11)	scaffold_13:13575691-13577666(+) (11)	NA	Q9UUC8	"60S ribosomal protein L51, mitochondrial"	AT3G59650.1	mitochondrial ribosomal protein L51/S25/CI-B8 family protein 	LOC_Os03g10930.2	"ribosomal protein L51, putative, expressed"	Medtr8g026240.1	Mitochondrial ribosome 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1797.2.A1_s_at	A	A1TS	POPTR_0007s10200	POPTR_0007s10200 (11)	scaffold_7:9955365-9955407(-) (11)	NA	O07015	Sigma factor sigB regulation protein rsbQ	AT4G37470.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g32270.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g099190.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.180.1.S1_s_at	A	A1TS	POPTR_0008s07270	POPTR_0008s07270 (11)	scaffold_8:4431290-4431662(-) (11)	NA	Q8H1T3	"Ferritin-2, chloroplastic"	AT3G11050.1	ferritin 2 	LOC_Os12g01530.2	"ferritin-1, chloroplast precursor, putative, expressed"	Medtr5g090670.1	Rubrerythrin; Ferritin-like 	GO:0006879|cellular iron ion homeostasis	GO:0008199|ferric iron binding	NA
Ptp.1800.1.A1_at	A	A1TS	POPTR_0003s15630	POPTR_0003s15630 (11)	scaffold_3:15369104-15371482(-) (11)	NA	O96623	Actin-related protein 2/3 complex subunit 2	AT1G30825.1	"Arp2/3 complex, 34 kD subunit p34-Arc "	LOC_Os01g46580.1	"actin-related protein 2/3 complex subunit 2, putative, expressed"	Medtr8g084130.1	"Arp2/3 complex, 34kDa subunit p34-Arc "	GO:0030833|regulation of actin filament polymerization	NA	GO:0005856|cytoskeleton
Ptp.1801.1.A1_at	A	A1TS	POPTR_0010s06200	POPTR_0010s06200 (11)	scaffold_10:7615162-7615579(+) (11)	NA	NA	NA	AT1G24480.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os08g02600.1	"methyltransferase domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.1802.1.A1_s_at	A	A1TS	POPTR_0015s05180	POPTR_0015s05180 (11)	scaffold_15:5536424-5536572(+) (11)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT2G01940.1	C2H2-like zinc finger protein 	LOC_Os09g27650.2	"ZOS9-14 - C2H2 zinc finger protein, expressed"	Medtr1g079070.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.1805.1.A1_s_at	A	A1TS	POPTR_0003s16080	POPTR_0003s16080 (11)	scaffold_3:15692464-15692886(+) (11)	NA	Q8VYZ0	E3 ubiquitin-protein ligase ORTHRUS 2	AT1G57820.1	Zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g01230.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g159770.1	"Zinc finger, RING-type; SRA-YDG; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1806.1.S1_s_at	A	A1TS	POPTR_0006s08630	POPTR_0006s08630 (11)	scaffold_6:6312264-6312762(-) (11)	NA	O80932	Expansin-A3	AT2G37640.1	Barwin-like endoglucanases superfamily protein 	LOC_Os03g60720.1	"expansin precursor, putative, expressed"	Medtr5g087380.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1807.1.S1_at	A	A1TS	POPTR_0014s07900	POPTR_0014s07900 (11)	scaffold_14:5866523-5868132(-) (11)	NA	P58137	Acyl-coenzyme A thioesterase 8	AT1G01710.1	Acyl-CoA thioesterase family protein 	LOC_Os04g47120.1	"acyl-CoA thioesterase 2, putative, expressed"	NA	NA	GO:0006637|acyl-CoA metabolic process	GO:0016291|acyl-CoA thioesterase activity	NA
Ptp.1810.1.A1_at	A	A1TS	POPTR_0004s15070	POPTR_0004s15070 (9)	scaffold_4:15744601-15745358(+) (9)	NA	NA	NA	AT2G15730.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g27760.1	"nodulation protein-related, putative, expressed"	Medtr3g148170.1	"nodulation protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1816.1.A1_at	A	A1TS	POPTR_0001s29620	POPTR_0001s29620 (11)	scaffold_1:28285597-28286449(+) (11)	NA	Q86C65	Target of rapamycin	AT1G50030.1	target of rapamycin 	LOC_Os05g14550.1	"Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed"	Medtr5g005530.1	"PIK-related kinase, FAT; PIK-related kinase, FATC; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding "	NA	"GO:0016773|""phosphotransferase activity, alcohol group as acceptor"""	NA
Ptp.1818.1.A1_at	A	A1TS	POPTR_0001s18590	POPTR_0001s18590 (10)	scaffold_1:15630281-15631706(+) (10)	NA	Q2V4B9	Probable plastidic glucose transporter 3	AT1G79820.2	Major facilitator superfamily protein 	LOC_Os02g17500.3	"transporter family protein, putative, expressed"	Medtr7g093430.1	General substrate transporter 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016021|integral to membrane
Ptp.1819.1.S1_at	A	A1TS	POPTR_0001s00860	POPTR_0001s00860 (11)	scaffold_1:712716-713734(-) (11)	NA	Q0WWQ1	Autophagy-related protein 3	AT5G61500.1	autophagy 3 (APG3) 	LOC_Os01g10290.2	"autophagy-related protein 3, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1820.1.A1_a_at	A	A1TS	POPTR_0013s00280	POPTR_0013s00280 (11)	scaffold_13:67473-67616(+) (11)	NA	Q6P988	Protein notum homolog	AT3G05910.1	Pectinacetylesterase family protein 	LOC_Os07g44070.1	"pectinacetylesterase domain containing protein, expressed"	Medtr7g134700.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1822.1.A1_at	A	A1TS	POPTR_0010s13130	POPTR_0010s13130 (11)	scaffold_10:13016501-13016783(+) (11)	NA	Q9M9C6	Probable protein phosphatase 2C 15	AT1G68410.2	Protein phosphatase 2C family protein 	LOC_Os07g49040.1	"protein phosphotase protein, putative, expressed"	Medtr1g140400.1	Protein phosphatase 2C-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1824.1.A1_at	A	A1TS	POPTR_0008s08580	POPTR_0008s08580 (10)	scaffold_8:5318464-5318763(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1825.1.A1_s_at	A	A1TS	POPTR_0011s13920	POPTR_0011s13920 (11)	scaffold_11:16543300-16545279(+) (11)	NA	Q9M5A9	"Glucose-6-phosphate/phosphate translocator 1, chloroplastic"	AT5G54800.1	glucose 6-phosphate/phosphate translocator 1 	LOC_Os08g08840.2	"phosphate/phosphate translocator, putative, expressed"	Medtr3g064280.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.1826.1.S1_at	A	A1TS	POPTR_0006s15350	POPTR_0006s15350 (11)	scaffold_6:12715030-12715481(+) (11)	NA	O82201	AP-4 complex subunit sigma	AT2G19790.1	SNARE-like superfamily protein 	LOC_Os08g30480.1	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr7g118420.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.1828.1.A1_at	A	A1TS	POPTR_0006s18370	POPTR_0006s18370 (11)	scaffold_6:16765377-16765611(+) (11)	NA	NA	NA	AT5G57460.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to 166 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). "	LOC_Os08g14620.1	expressed protein	Medtr8g128860.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1829.1.S1_s_at	A	A1TS	POPTR_0004s00900	POPTR_0004s00900 (9)	scaffold_4:430913-430945(+) (9)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.1832.1.A1_at	A	A1MS	POPTR_0006s03340	POPTR_0006s03340 (10)	scaffold_6:2119970-2120387(-) (10)	NA	Q940D0	Two-component response regulator ARR1	AT3G10760.1	Homeodomain-like superfamily protein 	LOC_Os05g34110.1	"homeodomain-related, putative, expressed"	Medtr7g105990.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1833.1.A1_at	A	A1TS	POPTR_0005s17150	POPTR_0005s17150 (11)	scaffold_5:14276342-14276844(-) (11)	NA	Q9SA00	5'-adenylylsulfate reductase-like 4	AT1G34780.1	APR-like 4 	LOC_Os02g51850.1	"OsAPRL3  adenosine 5'-phosphosulfate reductase-like OsAPRL3, expressed"	Medtr6g031020.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1834.1.A1_at	A	A1TS	POPTR_0003s01380	POPTR_0003s01380 (11)	scaffold_3:1210896-1211139(-) (11)	NA	P54493	Rhomboid protease gluP	AT1G25290.2	RHOMBOID-like protein 10 	LOC_Os09g28100.1	"OsRhmbd15 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
Ptp.1834.1.A1_s_at	A	A1TS	POPTR_0003s01380	POPTR_0003s01380 (11)	scaffold_3:1211160-1211751(-) (11)	NA	P54493	Rhomboid protease gluP	AT1G25290.2	RHOMBOID-like protein 10 	LOC_Os09g28100.1	"OsRhmbd15 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
Ptp.1834.2.A1_at	A	A1MS	POPTR_0003s01380	POPTR_0003s01380 (11)	scaffold_3:1212039-1212352(-) (11)	NA	P54493	Rhomboid protease gluP	AT1G25290.2	RHOMBOID-like protein 10 	LOC_Os09g28100.1	"OsRhmbd15 - Putative Rhomboid homologue, expressed"	Medtr2g095330.1	Rhomboid-like protein 	NA	NA	GO:0016021|integral to membrane
Ptp.1835.1.A1_at	A	A1TS	POPTR_0001s28920	POPTR_0001s28920 (9)	scaffold_1:27661379-27661411(+) (9)	NA	P10566	Mitochondrial RNA-splicing protein MRS3	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1835.1.A1_s_at	A	A1TS	POPTR_0001s28920	POPTR_0001s28920 (11)	scaffold_1:27661272-27661671(+) (11)	NA	P10566	Mitochondrial RNA-splicing protein MRS3	AT1G07030.1	Mitochondrial substrate carrier family protein 	LOC_Os03g18550.1	"mitochondrial carrier protein, putative, expressed"	Medtr5g081270.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1837.1.A1_s_at	A	A1TS	POPTR_0001s26460	POPTR_0001s26460 (11)	scaffold_1:25487414-25487787(+) (11)	NA	NA	NA	AT3G20920.1	translocation protein-related 	LOC_Os02g23890.1	"protein transporter, putative, expressed"	Medtr3g080660.1	Translocation protein Sec62 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1837.2.S1_at	A	A1TS	POPTR_0001s26460	POPTR_0001s26460 (11)	scaffold_1:25482088-25483448(+) (11)	NA	NA	NA	AT3G20920.1	translocation protein-related 	LOC_Os02g23890.1	"protein transporter, putative, expressed"	Medtr3g080660.1	Translocation protein Sec62 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1838.2.A1_a_at	A	A1TS	POPTR_0015s00310	POPTR_0015s00310 (10)	scaffold_15:147053-147486(-) (10)	NA	P28493	Pathogenesis-related protein 5	AT5G24620.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os09g32280.1	"thaumatin, putative"	Medtr5g077390.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1839.1.A1_s_at	A	A1TS	POPTR_0008s19920	POPTR_0008s19920 (11)	scaffold_8:13768008-13768377(+) (11)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.184.1.A1_at	A	A1TS	POPTR_0015s01480	POPTR_0015s01480 (10)	scaffold_15:909886-910290(-) (10)	NA	Q9SF32	Protein IQ-DOMAIN 1	AT3G49260.2	IQ-domain 21 	LOC_Os03g44610.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr3g123810.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1842.1.A1_at	A	A1TS	POPTR_0008s23000	POPTR_0008s23000 (9)	scaffold_8:18201325-18201438(+) (9)	NA	Q9FJ17	Protein DEHYDRATION-INDUCED 19 homolog 7	AT5G49230.1	Drought-responsive family protein 	LOC_Os05g28980.1	"drought induced 19 protein, putative, expressed"	Medtr1g100290.1	Drought induced 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1845.1.A1_at	A	A1TS	POPTR_0001s47010	POPTR_0001s47010 (11)	scaffold_1:47340233-47341113(-) (11)	NA	Q7ZWM6	Obg-like ATPase 1	AT1G30580.1	GTP binding 	LOC_Os08g09940.1	"GTP-binding protein, putative, expressed"	Medtr2g129790.1	TGS; GTP1/OBG 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1846.1.S1_at	A	A1TS	POPTR_0009s15860	POPTR_0009s15860 (9)	scaffold_9:12171194-12171282(-) (9)//scaffold_9:12180625-12180713(-) (9)	NA	O81081	Laccase-2	AT2G29130.1	laccase 2 	LOC_Os01g62490.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1846.1.S1_s_at	A	A1TS	POPTR_0009s03940	POPTR_0009s03940 (11)	scaffold_9:4524386-4524805(-) (11)	POPTR_0009s15860 (8)//POPTR_0001s18500 (8)//POPTR_0009s15840 (8)	O81081	Laccase-2	AT2G29130.1	laccase 2 	LOC_Os01g62490.1	"laccase precursor protein, putative, expressed"	Medtr7g067600.1	Cupredoxin 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.1847.1.A1_s_at	A	A2TS	POPTR_0005s18960	POPTR_0007s09950 (11)//POPTR_0005s18960 (11)	scaffold_5:17458650-17459083(+) (11)//scaffold_7:9507614-9508060(-) (11)	NA	P28523	Casein kinase II subunit alpha	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.1848.2.A1_a_at	A	A1TS	POPTR_0006s28190	POPTR_0006s28190 (9)	scaffold_6:25966938-25967450(-) (11)	NA	Q9LEW0	Ubiquitin carboxyl-terminal hydrolase 22	AT5G10790.1	ubiquitin-specific protease 22 	LOC_Os04g55360.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr1g017060.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
Ptp.1848.3.S1_at	A	A1MA	POPTR_0006s28190	POPTR_0006s28190 (9)	scaffold_6:25967402-25967550(+) (9)	NA	Q9LEW0	Ubiquitin carboxyl-terminal hydrolase 22	AT5G10790.1	ubiquitin-specific protease 22 	LOC_Os04g55360.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr1g017060.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
Ptp.1849.1.A1_at	A	A1MA	POPTR_0008s08570	POPTR_0008s08570 (10)	scaffold_8:5317168-5317515(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g044030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.185.1.A1_s_at	A	A1TS	POPTR_0006s02270	POPTR_0006s02270 (11)	scaffold_6:1485995-1486288(-) (11)	NA	NA	NA	AT3G22270.1	Topoisomerase II-associated protein PAT1 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1850.1.A1_at	A	A1TS	POPTR_0004s14200	POPTR_0004s14200 (11)	scaffold_4:14686595-14687060(+) (11)	NA	Q6IDS6	E3 ubiquitin-protein ligase makorin	AT3G08505.1	zinc finger (CCCH-type/C3HC4-type RING finger) family protein 	LOC_Os06g21390.2	"Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed"	Medtr3g030250.1	"Zinc finger, CCCH-type; Zinc finger, RING-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.1851.1.S1_s_at	A	A1TS	POPTR_0016s06950	POPTR_0016s06950 (10)	scaffold_16:4743596-4743629(+) (10)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr8g081920.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1851.1.S1_x_at	A	A1TS	POPTR_0016s06950	POPTR_0016s06950 (11)	scaffold_16:4743550-4744071(+) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr8g081920.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1854.1.S1_s_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41431877-41432427(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1854.2.S1_at	A	A1MS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41433089-41433244(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1854.2.S1_s_at	A	A1TS	POPTR_0001s41730	POPTR_0001s41730 (11)	scaffold_1:41432484-41433037(-) (11)	NA	Q9LZS7	GDSL esterase/lipase At5g03610	AT5G03610.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os04g55660.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr7g127010.1	"Lipolytic enzyme, G-D-S-L "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1856.1.A1_at	A	A1TS	POPTR_0006s00270	POPTR_0006s00270 (10)	scaffold_6:45640-46174(-) (10)	NA	Q9Y7K5	Uncharacterized WD repeat-containing protein C2A9.03	AT3G13340.2	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g48964.1	"WD-40 repeat family protein, putative, expressed"	Medtr2g033600.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1857.1.S1_at	A	A1TS	POPTR_0008s08280	POPTR_0008s08280 (9)	scaffold_8:5151806-5152150(-) (9)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT2G40980.1	Protein kinase superfamily protein 	LOC_Os02g29890.1	expressed protein	Medtr7g104330.1	"Tyrosine protein kinase, active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1858.1.S1_at	A	A1TS	POPTR_0014s01690	POPTR_0014s01690 (10)	scaffold_14:1580920-1581233(+) (10)	NA	Q37145	"Calcium-transporting ATPase 1, chloroplastic"	AT1G27770.1	autoinhibited Ca2+-ATPase 1 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.186.1.A1_s_at	A	A1TS	POPTR_0019s07570	POPTR_0019s07570 (11)	scaffold_19:8624604-8624884(-) (11)	NA	NA	NA	AT2G40480.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr5g091420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1860.1.A1_at	A	A1TS	POPTR_0001s31650	POPTR_0001s31650 (11)	scaffold_1:30022456-30022836(-) (11)	NA	NA	NA	AT3G18800.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g59050.1	hypothetical protein	Medtr3g144210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1861.1.S1_x_at	A	A3TS	POPTR_0010s22620	POPTR_0010s22620 (11)//POPTR_0010s22560 (10)//POPTR_0966s00200 (10)	scaffold_10:19433848-19434345(+) (10)//scaffold_10:19456195-19456707(-) (11)//scaffold_966:1552-8138(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.1861.4.A1_s_at	A	A1TS	POPTR_0966s00200	POPTR_0966s00200 (11)	scaffold_966:2833-3067(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.1863.1.S1_s_at	A	A1TS	POPTR_0015s12790	POPTR_0015s12790 (11)	scaffold_15:13010172-13010469(-) (11)	NA	Q9FEF8	rRNA 2'-O-methyltransferase fibrillarin 1	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.1863.2.S1_at	A	A1MS	POPTR_0015s12790	POPTR_0015s12790 (10)	scaffold_15:13010339-13010597(-) (10)	NA	Q9FEF8	rRNA 2'-O-methyltransferase fibrillarin 1	AT5G52470.1	fibrillarin 1 	LOC_Os02g57590.1	"rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed"	Medtr1g143320.1	Fibrillarin 	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	GO:0008168|methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.1865.1.A1_at	A	A1TS	POPTR_0014s05810	POPTR_0014s05810 (11)	scaffold_14:4358100-4359241(-) (11)	NA	P38389	Protein transport protein Sec61 subunit beta	AT3G60540.2	"Preprotein translocase Sec, Sec61-beta subunit protein "	LOC_Os12g07490.1	"protein transport protein Sec61 subunit beta, putative, expressed"	Medtr4g134690.1	Sec61beta 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1868.1.A1_s_at	A	A1TS	POPTR_0010s02580	POPTR_0010s02580 (11)	scaffold_10:3007158-3008683(-) (11)	NA	O75506	Heat shock factor-binding protein 1	AT4G15802.1	heat shock factor binding protein 	LOC_Os09g20830.2	"heat shock factor-binding protein 1, putative, expressed"	Medtr7g130390.1	Heat shock factor binding 1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1869.2.S1_s_at	A	A1TS	POPTR_0017s14280	POPTR_0017s14280 (11)	scaffold_17:14398494-14400526(+) (11)	NA	Q96471	S-adenosylmethionine decarboxylase proenzyme	AT3G02470.4	S-adenosylmethionine decarboxylase 	LOC_Os02g39795.1	"S-adenosyl-l-methionine decarboxylase leader peptide, putative, expressed"	Medtr8g140130.1	S-adenosylmethionine decarboxylase 	GO:0006597|spermine biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0044106|cellular amine metabolic process||GO:0008295|spermidine biosynthetic process	GO:0004014|adenosylmethionine decarboxylase activity	NA
Ptp.1872.1.S1_at	A	A1TS	POPTR_0003s16270	POPTR_0003s16270 (9)	scaffold_3:15849019-15849386(-) (9)	NA	NA	NA	AT1G03080.1	kinase interacting (KIP1-like) family protein 	LOC_Os03g43684.1	"KIP1, putative, expressed"	Medtr5g033430.1	KIP1-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1873.1.S1_at	A	A1TS	POPTR_0012s11250	POPTR_0012s11250 (11)	scaffold_12:11778263-11778907(+) (11)	NA	Q8BMD8	Calcium-binding mitochondrial carrier protein SCaMC-1	AT5G51050.1	Mitochondrial substrate carrier family protein 	LOC_Os06g40200.2	"calcium-binding mitochondrial carrier CBG00135, putative, expressed"	Medtr3g151470.1	Mitochondrial substrate carrier; EF-Hand type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1876.2.S1_a_at	A	A1TS	POPTR_0008s04200	POPTR_0008s04200 (11)	scaffold_8:2359701-2359928(+) (11)	NA	Q8BG32	26S proteasome non-ATPase regulatory subunit 11	AT1G29150.1	non-ATPase subunit 9 	LOC_Os04g36700.1	"proteasome subunit, putative, expressed"	Medtr3g132890.1	Proteasome component region PCI; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1877.1.A1_s_at	A	A1TS	POPTR_0011s14710	POPTR_0011s14710 (11)	scaffold_11:17018210-17018731(+) (11)	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1878.2.A1_a_at	A	A1TS	POPTR_0001s43060	POPTR_0001s43060 (11)	scaffold_1:43139453-43139786(+) (11)	NA	Q9N1Q0	Small nuclear ribonucleoprotein-associated protein B'	AT5G44500.2	Small nuclear ribonucleoprotein family protein 	LOC_Os07g07220.1	"LSM domain containing protein, expressed"	Medtr5g099340.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1879.1.S1_s_at	A	A1TS	POPTR_0012s03970	POPTR_0012s03970 (10)	scaffold_12:3185743-3187916(-) (11)	NA	NA	NA	AT1G48440.1	B-cell receptor-associated 31-like 	LOC_Os03g13750.1	"erwinia induced protein 2, putative, expressed"	Medtr6g080520.1	"T1N15.5, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.188.1.A1_at	A	A1TS	POPTR_0014s13120	POPTR_0014s13120 (11)	scaffold_14:9640752-9643830(-) (11)	NA	Q9LYC2	NPL4-like protein 1	AT3G63000.1	NPL4-like protein 1 	LOC_Os01g27990.1	"NPL4, putative, expressed"	AC235488_3.1	Ubiquitin; NPL4 AC235488.1 4598-10630 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1880.1.A1_at	A	A1TS	POPTR_0006s05380	POPTR_0006s05380 (10)	scaffold_6:3804257-3804815(+) (10)	NA	Q9XFW4	1-acyl-sn-glycerol-3-phosphate acyltransferase 2	AT3G57650.1	lysophosphatidyl acyltransferase 2 	LOC_Os11g41900.1	"acyltransferase, putative, expressed"	Medtr7g110940.1	"1-acyl-sn-glycerol-3-phosphate acyltransferase 2, putative "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.1881.2.S1_s_at	A	A1TS	POPTR_0017s08610	POPTR_0017s08610 (11)	scaffold_17:7234086-7234243(+) (11)	NA	Q01781	Adenosylhomocysteinase	AT4G13940.1	S-adenosyl-L-homocysteine hydrolase 	LOC_Os11g26850.2	"erythronate-4-phosphate dehydrogenase, putative, expressed"	Medtr3g104810.1	S-adenosyl-L-homocysteine hydrolase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004013|adenosylhomocysteinase activity	NA
Ptp.1886.1.S1_at	A	A1TS	POPTR_0004s16330	POPTR_0004s16330 (9)	scaffold_4:16829450-16830502(+) (11)	NA	Q8GY61	Transcription factor bHLH63	AT4G34530.1	cryptochrome-interacting basic-helix-loop-helix 1 	LOC_Os01g68700.2	"BHLH transcription factor, putative, expressed"	Medtr3g162340.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.1887.1.S1_at	A	A1TS	POPTR_0002s18230	POPTR_0002s18230 (11)	scaffold_2:14163756-14164634(+) (11)	NA	Q43187	Soluble inorganic pyrophosphatase	AT1G01050.1	pyrophosphorylase 1 	LOC_Os04g59040.1	"soluble inorganic pyrophosphatase, putative, expressed"	Medtr7g146210.1	Inorganic pyrophosphatase 	GO:0006796|phosphate metabolic process	GO:0004427|inorganic diphosphatase activity||GO:0000287|magnesium ion binding	GO:0005737|cytoplasm
Ptp.1888.1.S1_s_at	A	A1TS	POPTR_0002s22220	POPTR_0002s22220 (11)	scaffold_2:18890527-18891024(-) (11)	NA	P27518	"Chlorophyll a-b binding protein 151, chloroplastic"	AT2G05070.1	photosystem II light harvesting complex gene 2.2 	LOC_Os03g39610.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr5g104980.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.1890.1.S1_at	A	A1TS	POPTR_0003s04150	POPTR_0003s04150 (11)	scaffold_3:4843131-4843490(+) (11)	NA	P41381	Eukaryotic initiation factor 4A-8	AT3G13920.1	eukaryotic translation initiation factor 4A1 	LOC_Os06g48750.2	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr2g046570.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.1892.1.S1_x_at	A	A1TS	POPTR_0010s16510	POPTR_0010s16510 (11)	scaffold_10:15445002-15445226(-) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1895.1.S1_at	A	A1TS	POPTR_0002s11250	POPTR_0002s11250 (9)	scaffold_2:8327490-8327869(+) (9)	NA	Q9ZRR5	Tubulin alpha-3 chain	AT1G50010.1	tubulin alpha-2 chain 	LOC_Os03g51600.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr8g102250.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.1897.1.S1_a_at	A	A1TS	POPTR_0003s15140	POPTR_0003s15140 (11)	scaffold_3:15006912-15007192(+) (11)	NA	Q38890	Endoglucanase 25	AT5G49720.1	glycosyl hydrolase 9A1 	LOC_Os03g21210.1	"endoglucanase, putative, expressed"	Medtr2g034060.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.1898.1.S1_at	A	A1TS	POPTR_0019s09140	POPTR_0019s09140 (11)	scaffold_19:10697402-10698338(-) (11)	NA	Q9XF89	"Chlorophyll a-b binding protein CP26, chloroplastic"	AT4G10340.1	light harvesting complex of photosystem II 5 	LOC_Os11g13890.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g070180.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.19.1.S1_at	A	A1TS	POPTR_0016s08710	POPTR_0016s08710 (11)	scaffold_16:6502611-6503215(-) (11)	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.19.1.S1_x_at	A	A1TS	POPTR_0016s08710	POPTR_0016s08710 (11)	scaffold_16:6502545-6503215(-) (11)	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1902.1.S1_at	A	A1TS	POPTR_0004s05020	POPTR_0004s05020 (11)	scaffold_4:3774540-3775028(+) (11)	NA	Q946Y7	Syntaxin-61	AT1G28490.1	syntaxin of plants 61 	LOC_Os01g73230.1	"syntaxin 6, putative, expressed"	Medtr5g100170.1	Syntaxin/epimorphin family 	GO:0048193|Golgi vesicle transport	GO:0005515|protein binding	GO:0016020|membrane
Ptp.1903.1.S1_x_at	A	A1TS	POPTR_0004s17610	POPTR_0004s17610 (11)	scaffold_4:17743689-17744151(+) (11)	NA	Q8W171	Peptidyl-prolyl cis-trans isomerase 1	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.1903.2.S1_x_at	A	A1TS	POPTR_0002s09370	POPTR_0002s09370 (11)	scaffold_2:6675657-6676704(+) (11)	NA	P33050	Pollen-specific protein C13	AT4G08685.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os10g22590.1	"POEI24 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	CU651566_3.1	Pollen Ole e 1 allergen and extensin CU651566.9 19800-21791 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1906.1.A1_s_at	A	A1TS	POPTR_0018s11280	POPTR_0018s11280 (11)	scaffold_18:12091279-12093234(+) (11)	NA	NA	NA	AT4G30710.1	Family of unknown function (DUF566)  	LOC_Os09g25500.1	expressed protein	Medtr8g144970.1	Protein of unknown function DUF566 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1909.1.A1_at	A	A1TS	POPTR_0014s03200	POPTR_0014s03200 (11)	scaffold_14:2561376-2561483(-) (11)	NA	Q9SX77	"Uncharacterized protein At1g47420, mitochondrial"	AT1G47420.1	succinate dehydrogenase 5 	LOC_Os04g34100.1	expressed protein	Medtr1g024840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.191.1.A1_at	A	A1TS	POPTR_0002s24910	POPTR_0002s24910 (11)	scaffold_2:22121355-22121603(-) (11)	NA	NA	NA	AT3G07310.1	Protein of unknown function (DUF760) 	LOC_Os11g26890.2	expressed protein	Medtr8g012790.1	Protein of unknown function DUF760 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1912.1.A1_s_at	A	A1TS	POPTR_0005s25830	POPTR_0005s25830 (11)	scaffold_5:24034788-24035165(+) (11)	NA	Q0WSY2	Filament-like plant protein 4	AT1G19835.2	Plant protein of unknown function (DUF869) 	LOC_Os03g14250.1	"plant protein of unknown function DUF869 domain containing protein, expressed"	Medtr5g021760.1	"Protein of unknown function DUF869, plant "	GO:0016032|viral reproduction	NA	NA
Ptp.1913.1.A1_at	A	A1TS	POPTR_0001s15170	POPTR_0001s15170 (11)	scaffold_1:12000654-12001185(-) (11)	NA	Q8W4H1	GATA transcription factor 26	AT4G17570.3	GATA transcription factor 26 	LOC_Os04g46020.1	"GATA zinc finger domain containing protein, expressed"	Medtr5g013520.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.1914.1.A1_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5419391-5419563(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
Ptp.1914.1.A1_s_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5419132-5419306(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
Ptp.1914.2.A1_a_at	A	A1TS	POPTR_0001s07140	POPTR_0001s07140 (11)	scaffold_1:5419299-5419349(+) (11)	NA	Q9FFY6	Protein ELC-like	AT5G13860.1	ELCH-like 	LOC_Os02g58640.1	"tumor susceptibility gene 101, putative, expressed"	Medtr4g100860.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0006464|protein modification process||GO:0015031|protein transport	NA	NA
Ptp.1923.1.A1_s_at	A	A1TS	POPTR_0011s01800	POPTR_0011s01800 (11)	scaffold_11:1406365-1406699(-) (11)//scaffold_11:1616488-1616807(-) (9)	POPTR_0011s01960 (7)	NA	NA	AT4G22190.1	unknown protein; Has 283 Blast hits to 154 proteins in 44 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 12; Plants - 48; Viruses - 0; Other Eukaryotes - 197 (source: NCBI BLink). 	LOC_Os11g30430.1	expressed protein	Medtr2g029070.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1924.1.A1_at	A	A1TS	POPTR_0003s12380	POPTR_0003s12380 (11)	scaffold_3:12969249-12970002(-) (11)	NA	Q43070	UDP-glucose 4-epimerase	AT1G12780.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 1 	LOC_Os09g35800.1	"UDP-glucose 4-epimerase, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.1928.1.A1_at	A	A1TS	POPTR_0018s08470	POPTR_0018s08470 (9)	scaffold_18:9411795-9412772(-) (9)	NA	Q9SMY8	F-box/LRR-repeat protein 15	AT4G33210.1	F-box family protein 	LOC_Os10g25680.1	"OsFBL52 - F-box domain and LRR containing protein, expressed"	Medtr1g019570.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.1930.1.S1_s_at	A	A1TS	POPTR_0008s09450	POPTR_0008s09450 (11)	scaffold_8:5855508-5855714(+) (11)	NA	Q9C5W6	14-3-3-like protein GF14 iota	AT1G26480.1	general regulatory factor 12 	LOC_Os02g36974.4	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.1937.1.A1_s_at	A	A1TS	POPTR_0004s23850	POPTR_0004s23850 (11)	scaffold_4:22478797-22479070(+) (11)	NA	Q91W34	UPF0420 protein C16orf58 homolog	AT5G49820.1	"Protein of unknown function, DUF647 "	LOC_Os05g34650.1	"DUF647 domain containing protein, putative, expressed"	Medtr4g106950.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.194.1.A1_s_at	A	A1TS	POPTR_0010s13060	POPTR_0010s13060 (11)	scaffold_10:12953491-12953598(-) (11)	NA	NA	NA	AT2G01260.1	Protein of unknown function (DUF789) 	LOC_Os01g33000.1	expressed protein	Medtr1g140340.1	Protein of unknown function DUF789 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1940.2.A1_at	A	A1MS	POPTR_0008s01960	POPTR_0008s01960 (9)	scaffold_8:939179-939339(+) (9)	NA	Q04960	DnaJ protein homolog	AT5G22060.1	DNAJ homologue 2 	LOC_Os03g44620.2	"chaperone protein dnaJ, putative, expressed"	Medtr4g066990.1	DnaJ central region 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0031072|heat shock protein binding||GO:0051082|unfolded protein binding	NA
Ptp.1941.1.A1_at	A	A1TS	POPTR_0001s46000	POPTR_0001s46000 (11)	scaffold_1:46511794-46512015(-) (11)	POPTR_0011s14930 (7)	O65351	Subtilisin-like protease	AT4G10550.1	Subtilase family protein 	LOC_Os06g41880.1	"OsSub51 - Putative Subtilisin homologue, expressed"	Medtr8g086940.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1941.1.A1_s_at	A	A1TS	POPTR_0001s46000	POPTR_0001s46000 (11)	scaffold_1:46511600-46511800(-) (11)	NA	O65351	Subtilisin-like protease	AT4G10550.1	Subtilase family protein 	LOC_Os06g41880.1	"OsSub51 - Putative Subtilisin homologue, expressed"	Medtr8g086940.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.1942.1.S1_s_at	A	A1TS	POPTR_0008s00270	POPTR_0008s00270 (11)	scaffold_8:59354-59761(+) (11)	NA	Q9LRB0	Sphingoid long-chain bases kinase 1	AT5G23450.2	long-chain base (LCB) kinase 1 	LOC_Os10g37280.1	"diacylglycerol kinase, putative, expressed"	Medtr2g013560.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.1943.1.S1_at	A	A1TS	POPTR_0001s13400	POPTR_0001s13400 (11)	scaffold_1:10495533-10495737(-) (11)	NA	O35459	"Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial"	AT5G43280.1	"delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 "	LOC_Os01g70090.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr3g103380.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1944.1.S1_at	A	A1TS	POPTR_0017s02400	POPTR_0017s02400 (11)	scaffold_17:1735160-1735379(-) (11)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1944.1.S1_s_at	A	A1TS	POPTR_0017s02400	POPTR_0017s02400 (9)	scaffold_17:1729309-1735630(-) (9)	NA	Q84MB3	1-aminocyclopropane-1-carboxylate oxidase homolog 1	AT1G06620.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.1945.1.S1_s_at	A	A1TS	POPTR_0006s14030	POPTR_0006s14030 (11)	scaffold_6:11295388-11296664(-) (11)	NA	P52410	"3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic"	AT1G74960.3	fatty acid biosynthesis 1 	LOC_Os07g42420.1	"3-oxoacyl-synthase, putative, expressed"	Medtr8g132860.1	Beta-ketoacyl synthase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.195.1.S1_at	A	A1TS	POPTR_0004s16020	POPTR_0004s16020 (11)	scaffold_4:16488338-16489373(+) (11)	NA	NA	NA	AT1G11755.1	Undecaprenyl pyrophosphate synthetase family protein 	LOC_Os03g10080.1	expressed protein	Medtr5g007400.1	Di-trans-poly-cis-decaprenylcistransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1952.2.S1_s_at	A	A1TS	POPTR_0007s10230	POPTR_0007s10230 (11)	scaffold_7:10070672-10072644(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g099180.1	"Lysine-rich arabinogalactan protein 18 precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1953.1.S1_at	A	A1TS	POPTR_0010s08430	POPTR_0010s08430 (11)	scaffold_10:9344971-9345435(+) (11)	NA	NA	NA	AT5G43460.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1954.1.S1_at	A	A1TS	POPTR_0005s09370	POPTR_0005s09370 (11)	scaffold_5:6538938-6539393(-) (11)	NA	P68209	"Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial"	AT5G08300.1	"Succinyl-CoA ligase, alpha subunit "	LOC_Os07g38970.1	"succinyl-CoA ligase subunit alpha-2, mitochondrial precursor, putative, expressed"	Medtr6g089770.1	CoA-binding 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.1956.1.S1_at	A	A1TS	POPTR_0019s08080	POPTR_0019s08080 (11)	scaffold_19:9469294-9469382(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1956.1.S1_x_at	A	A1TS	POPTR_0019s08080	POPTR_0019s08080 (11)	scaffold_19:9469294-9471997(-) (11)	NA	Q5ZL42	Basic leucine zipper and W2 domain-containing protein 2	AT5G36230.1	ARM repeat superfamily protein 	LOC_Os11g21990.1	expressed protein	Medtr7g089760.1	eIF4-gamma/eIF5/eIF2-epsilon 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1957.1.S1_at	A	A1TS	POPTR_0018s13330	POPTR_0018s13330 (11)	scaffold_18:13690649-13693082(-) (11)	NA	Q8LFQ6	Glutaredoxin-C4	AT5G20500.1	Glutaredoxin family protein 	LOC_Os06g44910.1	"OsGrx_C4 - glutaredoxin subgroup I, expressed"	Medtr2g043290.3	Thioredoxin-like fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.1958.1.S1_at	A	A1TS	POPTR_0010s16980	POPTR_0010s16980 (11)	scaffold_10:15756548-15756981(+) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT2G03350.1	"Protein of unknown function, DUF538 "	LOC_Os03g11210.1	"DUF538 domain containing protein, putative, expressed"	Medtr5g046080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1958.1.S1_s_at	A	A1TS	POPTR_0010s16980	POPTR_0010s16980 (11)	scaffold_10:15756518-15756954(+) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT2G03350.1	"Protein of unknown function, DUF538 "	LOC_Os03g11210.1	"DUF538 domain containing protein, putative, expressed"	Medtr5g046080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1959.1.S1_s_at	A	A1TS	POPTR_0021s00290	POPTR_0021s00290 (11)	scaffold_21:88359-89587(+) (11)	NA	O04057	Aspartic proteinase	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.1960.1.A1_s_at	A	A1TS	POPTR_0001s14120	POPTR_0001s14120 (9)	scaffold_1:11077455-11078374(-) (9)	NA	Q9T0H9	"UPF0016 protein 2, chloroplastic"	AT4G13590.1	Uncharacterized protein family (UPF0016) 	LOC_Os11g34180.1	"uncharacterized protein family UPF0016 domain containing protein, expressed"	Medtr5g009920.1	Protein of unknown function UPF0016 	NA	NA	GO:0016020|membrane
Ptp.1962.1.S1_s_at	A	A1TS	POPTR_0018s07370	POPTR_0018s07370 (11)	scaffold_18:7609181-7609488(-) (11)	NA	Q9SZA3	Eukaryotic translation initiation factor 3 subunit K	AT4G33250.1	eukaryotic translation initiation factor 3K 	LOC_Os03g08450.1	"eukaryotic translation initiation factor 3 subunit K, putative, expressed"	Medtr8g133200.1	SAC3/GANP; Eukaryotic translation initiation factor 3 subunit 12; Winged helix repressor DNA-binding 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1963.1.S1_at	A	A1TS	POPTR_0002s03600	POPTR_0002s03600 (9)	scaffold_2:2241363-2241752(+) (9)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT1G47270.2	tubby like protein 6 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1965.1.S1_s_at	A	A1TS	POPTR_0004s01510	POPTR_0004s01510 (11)	scaffold_4:867559-867851(+) (11)	NA	Q9SB81	Peroxidase 42	AT4G21960.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr8g146760.2	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.1967.1.S1_at	A	A1TS	POPTR_0001s32420	POPTR_0001s32420 (11)	scaffold_1:30757173-30758512(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT1G04910.1	O-fucosyltransferase family protein 	LOC_Os11g29120.1	"growth regulator related protein, putative, expressed"	Medtr1g129940.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1968.1.S1_s_at	A	A1TS	POPTR_0001s38920	POPTR_0001s38920 (11)	scaffold_1:38181422-38182910(+) (11)	NA	Q8L9S1	60S ribosomal protein L18a-1	AT1G17080.1	Ribosomal protein L18ae family 	LOC_Os05g49020.1	"60S ribosomal protein L18a-1, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1969.1.A1_at	A	A1TS	POPTR_0009s03740	POPTR_0009s03740 (10)	scaffold_9:4356416-4356633(+) (10)	NA	Q9CQT9	Uncharacterized protein C20orf24 homolog	AT5G59410.1	Rab5-interacting family protein 	LOC_Os05g01994.1	"rab5-interacting protein like, putative, expressed"	Medtr2g116740.1	Rab5-interacting 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1970.1.S1_s_at	A	A1TS	POPTR_0002s16390	POPTR_0002s16390 (11)	scaffold_2:12264532-12265055(+) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G61490.3	Pectin lyase-like superfamily protein 	LOC_Os03g03350.1	"polygalacturonase, putative, expressed"	Medtr7g088390.1	Parallel beta-helix repeat 	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.1971.1.S1_s_at	A	A1TS	POPTR_0009s02590	POPTR_0009s02590 (11)	scaffold_9:3370423-3371169(+) (11)	NA	O23715	Proteasome subunit alpha type-3	AT2G27020.1	20S proteasome alpha subunit G1 	LOC_Os01g59600.2	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.1972.1.A1_s_at	A	A1TS	POPTR_0004s11090	POPTR_0004s11090 (10)	scaffold_4:9685416-9688402(-) (11)	NA	NA	NA	AT5G64130.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os01g14690.6	"Lg106, putative, expressed"	Medtr2g077020.1	Lg106-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1973.1.S1_at	A	A1TS	POPTR_0003s17240	POPTR_0003s17240 (11)	scaffold_3:16659802-16662680(-) (11)	NA	Q9P0J0	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	AT1G04630.1	GRIM-19 protein 	LOC_Os03g09210.1	"NADH dehydrogenase 1 alpha subcomplex subunit 13, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1974.1.S1_at	A	A1TS	POPTR_0001s29450	POPTR_0001s29450 (11)	scaffold_1:28122007-28122066(-) (11)	NA	Q9NX01	Thioredoxin-like protein 4B	AT3G24730.1	"mRNA splicing factor, thioredoxin-like U5 snRNP "	LOC_Os11g19220.1	"mitosis protein dim1, putative, expressed"	Medtr3g133440.1	Thioredoxin fold 	GO:0007067|mitosis	NA	GO:0005681|spliceosomal complex
Ptp.1975.1.S1_at	A	A1TS	POPTR_0005s23910	POPTR_0005s23910 (11)	scaffold_5:22612826-22615107(+) (11)	NA	Q9ZQX4	V-type proton ATPase subunit F	AT4G02620.1	vacuolar ATPase subunit F family protein 	LOC_Os02g57854.1	"vacuolar ATP synthase subunit F, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.1976.1.S1_s_at	A	A1TS	POPTR_0001s21520	POPTR_0001s21520 (11)	scaffold_1:20010026-20015934(-) (11)	NA	P43255	COP9 signalosome complex subunit 8	AT4G14110.1	"COP9 signalosome, subunit CSN8 "	LOC_Os04g34930.1	"COP9 signalosome complex subunit 8, putative, expressed"	Medtr2g007990.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1977.1.S1_at	A	A1TS	POPTR_0016s08310	POPTR_0016s08310 (10)	scaffold_16:6128874-6129377(+) (10)	NA	P41129	60S ribosomal protein L13-2	AT3G49010.3	breast basic conserved 1 	LOC_Os06g02510.3	"ribosomal protein L13, putative, expressed"	Medtr5g026910.1	Ribosomal protein L13e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1978.2.S1_s_at	A	A2TS	POPTR_0002s03530	POPTR_0002s03530 (11)//POPTR_0005s25080 (11)	scaffold_2:2197845-2199312(+) (11)//scaffold_5:23422255-23424081(-) (11)	NA	O23712	Proteasome subunit alpha type-1-B	AT1G47250.1	20S proteasome alpha subunit F2 	LOC_Os02g04100.1	"peptidase, T1 family, putative, expressed"	Medtr4g008970.1	"20S proteasome, A and B subunits "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.198.1.A1_at	A	A1TS	POPTR_0017s04660	POPTR_0017s04660 (11)	scaffold_17:3555377-3555904(-) (11)	NA	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.198.1.A1_s_at	A	A1TS	POPTR_0017s04660	POPTR_0017s04660 (11)	scaffold_17:3555534-3555756(-) (11)	NA	Q9SIV2	26S proteasome non-ATPase regulatory subunit 2 1A	AT2G20580.1	26S proteasome regulatory subunit S2 1A 	LOC_Os02g05340.1	"proteasome/cyclosome repeat containing protein, expressed"	Medtr4g108550.1	"Proteasome/cyclosome, regulatory subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1980.1.S1_s_at	A	A1TS	POPTR_0012s13610	POPTR_0012s13610 (11)	scaffold_12:13693360-13693508(+) (11)	NA	O88828	"DNA-directed RNA polymerases I, II, and III subunit RPABC2"	AT5G51940.1	RNA polymerase Rpb6 	LOC_Os03g38960.1	"DNA-directed RNA polymerase subunit, putative, expressed"	Medtr7g111100.1	60 kDa inner membrane insertion protein 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006351|""transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0003899|DNA-directed RNA polymerase activity	NA
Ptp.1984.1.S1_x_at	A	A1TS	POPTR_0002s05870	POPTR_0002s05870 (11)	scaffold_2:3853179-3853683(+) (11)	NA	Q9ATF5	60S ribosomal protein L18a	AT2G34480.1	Ribosomal protein L18ae/LX family protein 	LOC_Os05g49030.1	"60S ribosomal protein L18a, putative, expressed"	Medtr2g117520.1	Ribosomal L18ae protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1985.2.A1_s_at	A	A1TS	POPTR_0012s05470	POPTR_0012s05470 (11)	scaffold_12:5126778-5127586(+) (11)	NA	P49592	Protein Dr1 homolog	AT5G23090.1	"nuclear factor Y, subunit B13 "	LOC_Os08g29500.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g115740.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.1986.1.S1_a_at	A	A1TS	POPTR_0015s11780	POPTR_0015s11780 (11)	scaffold_15:12317988-12318352(-) (11)	NA	P41098	60S ribosomal protein L34	AT1G26880.1	Ribosomal protein L34e superfamily protein 	LOC_Os09g24690.1	"60S ribosomal protein L34, putative, expressed"	Medtr7g009550.1	Ribosomal protein L34e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1987.1.A1_at	A	A1TS	POPTR_0004s20640	POPTR_0004s20640 (10)	scaffold_4:20101935-20102975(-) (10)	NA	Q5RAZ5	Non-structural maintenance of chromosomes element 1 homolog	AT5G21140.1	embryo defective 1379 	LOC_Os12g03360.1	"EMB1379, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1989.1.S1_at	A	A1MS	POPTR_0003s20720	POPTR_0003s20720 (9)	scaffold_3:19170693-19171421(-) (9)	NA	O81635	Kinesin-4	AT1G55550.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g15540.1	"kinesin motor domain containing protein, putative, expressed"	Medtr1g099520.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.199.1.A1_at	A	A1TS	POPTR_0003s17720	POPTR_0003s17720 (11)	scaffold_3:17022055-17024528(+) (11)	NA	C0QTM4	30S ribosomal protein S15	AT1G80620.1	"S15/NS1, RNA-binding protein "	LOC_Os06g07996.1	ribosomal protein S15 containing protein	Medtr4g006580.1	"Ribosomal protein S15, bacterial chloroplast and mitochondrial type "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.1990.1.S1_a_at	A	A1TS	POPTR_0019s12210	POPTR_0019s12210 (10)	scaffold_19:13321068-13321328(+) (10)	NA	Q6Z7L8	Rac-like GTP-binding protein 7	AT1G75840.1	RAC-like GTP binding protein 5 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.1991.1.S1_at	A	A1TS	POPTR_0010s20610	POPTR_0010s20610 (10)	scaffold_10:18124650-18127896(+) (10)	NA	Q945M8	UPF0497 membrane protein At3g53850	AT3G53850.1	Uncharacterised protein family (UPF0497) 	LOC_Os09g07480.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr4g018930.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1994.1.S1_at	A	A1TS	POPTR_0004s22620	POPTR_0004s22620 (11)	scaffold_11:803520-807087(+) (11)//scaffold_4:21486376-21489933(+) (11)	POPTR_0011s01280 (7)	O65199	"Superoxide dismutase [Cu-Zn], chloroplastic"	AT2G28190.1	copper/zinc superoxide dismutase 2 	LOC_Os08g44770.1	"copper/zinc superoxide dismutase, putative, expressed"	Medtr4g076170.1	"Superoxide dismutase, copper/zinc binding "	GO:0055114|oxidation reduction||GO:0006801|superoxide metabolic process	GO:0046872|metal ion binding	NA
Ptp.1995.1.S1_s_at	A	A1TS	POPTR_0006s04320	POPTR_0006s04320 (11)	scaffold_6:2948499-2948868(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os03g23010.1	expressed protein	Medtr7g107690.1	"ERD15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.1996.1.S1_s_at	A	A1TS	POPTR_0006s03180	POPTR_0006s03180 (11)	scaffold_6:2001953-2002530(-) (11)	NA	O48922	Cytochrome P450 98A2	AT2G40890.1	"cytochrome P450, family 98, subfamily A, polypeptide 3 "	LOC_Os05g41440.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.1997.1.S1_x_at	A	A1TS	POPTR_0005s04630	POPTR_0005s04630 (11)	scaffold_5:3102263-3103886(-) (11)	NA	P93092	"Acyl carrier protein 1, chloroplastic"	AT5G27200.1	acyl carrier protein 5 	LOC_Os12g34890.1	"acyl carrier protein, putative, expressed"	Medtr2g025430.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
Ptp.1998.1.S1_at	A	A1TS	POPTR_0009s11880	POPTR_0009s11880 (11)	scaffold_9:9783986-9785218(+) (11)	NA	Q42599	"NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial"	AT1G79010.1	Alpha-helical ferredoxin 	LOC_Os03g56300.1	"4Fe-4S binding domain containing protein, expressed"	AC225519_18.1	Alpha-helical ferredoxin AC225519.5 76420-84409 E EGN_Mt090430 200	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.1999.2.S1_s_at	A	A1TS	POPTR_0008s03800	POPTR_0008s03800 (11)	scaffold_8:2045932-2046626(-) (11)	NA	Q9LZG0	Adenosine kinase 2	AT5G03300.1	adenosine kinase 2 	LOC_Os02g41590.1	"kinase, pfkB family, putative, expressed"	Medtr4g080300.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2.1.S1_s_at	A	A1TS	POPTR_0011s15930	POPTR_0011s15930 (11)	scaffold_11:17939106-17940510(+) (11)	NA	Q9SA78	Coatomer subunit epsilon-1	AT1G30630.1	Coatomer epsilon subunit 	LOC_Os04g52270.1	"coatomer subunit epsilon, putative, expressed"	NA	NA	"GO:0006890|""retrograde vesicle-mediated transport, Golgi to ER"""	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
Ptp.20.1.A1_at	A	A1TS	POPTR_0006s20710	POPTR_0006s20710 (11)	scaffold_6:19695708-19695859(-) (11)	NA	O81221	Actin	AT3G12110.1	actin-11 	LOC_Os03g50885.1	"actin, putative, expressed"	Medtr7g111960.1	Actin/actin-like 	NA	GO:0005515|protein binding	NA
Ptp.2000.1.S1_at	A	A1TS	POPTR_0005s11200	POPTR_0005s11200 (11)	scaffold_5:8119625-8120562(-) (11)	NA	NA	NA	AT4G35920.2	PLAC8 family protein 	LOC_Os03g06120.3	"PLAC8 family protein, expressed"	Medtr5g022570.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2001.1.S1_s_at	A	A1TS	POPTR_0004s16990	POPTR_0004s16990 (11)	scaffold_4:17349947-17352075(+) (11)	NA	NA	NA	AT4G34700.1	LYR family of Fe/S cluster biogenesis protein 	LOC_Os06g50000.1	"LYR motif containing protein, putative, expressed"	Medtr3g163080.1	Complex 1 LYR protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2003.1.A1_x_at	A	A1TS	POPTR_0008s05000	POPTR_0008s05000 (11)	scaffold_8:2910794-2912384(+) (11)	NA	Q9AT35	60S ribosomal protein L23a	AT3G55280.2	ribosomal protein L23AB 	LOC_Os01g24690.1	"60S ribosomal protein L23A, putative, expressed"	Medtr4g079040.1	"Ribosomal protein L23, N-terminal; Ribosomal L23 and L15e, core "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2004.1.A1_at	A	A1TS	POPTR_0003s04140	POPTR_0003s04140 (11)	scaffold_3:4800333-4800979(-) (11)	NA	Q8RWN9	"Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial"	AT3G13930.1	"Dihydrolipoamide acetyltransferase, long form protein "	LOC_Os06g01630.5	"2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed"	Medtr8g021820.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0008152|metabolic process	GO:0005515|protein binding||GO:0008415|acyltransferase activity	NA
Ptp.2005.1.S1_at	A	A1TS	POPTR_0001s31850	POPTR_0001s31850 (10)	scaffold_1:30209736-30210083(+) (11)	NA	Q9M3V8	40S ribosomal protein S6	AT5G10360.1	Ribosomal protein S6e 	LOC_Os03g27260.1	"40S ribosomal protein S6, putative, expressed"	Medtr2g017530.1	Ribosomal protein S6e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2006.1.S1_s_at	A	A1MS	POPTR_0001s13730	POPTR_0001s13730 (11)	scaffold_1:10796996-10798770(-) (11)	NA	Q9C7F5	Nuclear transport factor 2	AT1G27970.1	nuclear transport factor 2B 	LOC_Os08g42000.1	"nuclear transport factor, putative, expressed"	Medtr3g104070.1	Nuclear transport factor 2 	GO:0006810|transport	NA	GO:0005622|intracellular
Ptp.2007.1.S1_s_at	A	A1TS	POPTR_0001s09090	POPTR_0001s09090 (10)	scaffold_1:6951061-6951360(-) (10)	NA	P93788	Remorin	AT5G23750.2	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2008.1.S1_at	A	A1TS	POPTR_0017s14180	POPTR_0017s14180 (11)	scaffold_17:14332632-14333934(-) (11)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os02g28810.2	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	GO:0005622|intracellular
Ptp.2009.1.S1_a_at	A	A1TS	POPTR_0003s13340	POPTR_0003s13340 (11)	scaffold_3:13741048-13741093(+) (11)	NA	Q9SUR3	Reticulon-like protein B1	AT4G23630.1	VIRB2-interacting protein 1 	LOC_Os05g45050.1	"reticulon domain containing protein, putative, expressed"	Medtr1g125980.1	Reticulon 	NA	NA	GO:0005783|endoplasmic reticulum
Ptp.2010.1.S1_at	A	A1TS	POPTR_0008s09940	POPTR_0008s09940 (10)	scaffold_8:6155255-6156879(-) (10)	NA	O48649	ADP-ribosylation factor 1	AT1G10630.1	ADP-ribosylation factor A1F 	LOC_Os01g59790.3	"ADP-ribosylation factor, putative, expressed"	Medtr6g005750.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2012.1.S1_at	A	A1TS	POPTR_0008s14060	POPTR_0008s14060 (11)	scaffold_8:9292157-9293206(-) (11)	NA	NA	NA	AT2G37870.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os01g62980.1	"LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr7g070980.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2014.1.S1_s_at	A	A1TS	POPTR_0006s15400	POPTR_0006s15400 (11)	scaffold_6:12763045-12763690(+) (11)	NA	P12955	Xaa-Pro dipeptidase	AT4G29490.1	Metallopeptidase M24 family protein 	LOC_Os02g13140.1	"xaa-Pro dipeptidase, putative, expressed"	Medtr4g160750.1	Peptidase M24 	GO:0009987|cellular process	NA	NA
Ptp.2015.1.S1_at	A	A1TS	POPTR_0003s06780	POPTR_0003s06780 (11)	scaffold_3:8307749-8308048(-) (11)	NA	NA	NA	AT3G14170.1	Plant protein of unknown function (DUF936) 	LOC_Os03g08390.2	expressed protein	Medtr5g035680.1	"Protein of unknown function DUF936, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2016.1.S1_a_at	A	A1TS	POPTR_0002s14130	POPTR_0002s14130 (11)	scaffold_2:10483884-10484561(+) (11)	NA	Q9M5M1	40S ribosomal protein S11	AT5G23740.1	ribosomal protein S11-beta 	LOC_Os08g10608.1	"ribosomal protein S17, putative, expressed"	Medtr8g092770.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2017.1.A1_s_at	A	A1TS	POPTR_0016s10780	POPTR_0016s10780 (11)	scaffold_16:9145083-9145485(-) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2018.1.S1_a_at	A	A1TS	POPTR_0010s05590	POPTR_0010s05590 (11)	scaffold_10:7028452-7028557(-) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr3g114720.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2018.2.A1_s_at	A	A1TS	POPTR_0005s03640	POPTR_0005s03640 (11)	scaffold_5:2425225-2425701(-) (11)	NA	O22040	Mitogen-activated protein kinase kinase kinase ANP1	AT1G09000.1	NPK1-related protein kinase 1 	LOC_Os09g21510.1	"STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast"	Medtr7g139260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2019.1.A1_at	A	A1TS	POPTR_0001s30470	POPTR_0001s30470 (10)	scaffold_1:28929604-28929968(-) (10)	NA	NA	NA	AT3G19540.1	Protein of unknown function (DUF620) 	LOC_Os07g40150.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2020.1.S1_s_at	A	A1TS	POPTR_0012s09310	POPTR_0012s09310 (11)	scaffold_12:10345948-10346140(-) (11)	NA	Q9C5M8	Probable pectate lyase 18	AT4G24780.2	Pectin lyase-like superfamily protein 	LOC_Os04g05050.1	"pectate lyase precursor, putative, expressed"	Medtr8g110050.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2021.1.S1_at	A	A1TS	POPTR_0001s04360	POPTR_0001s04360 (9)	scaffold_1:3457684-3458745(+) (9)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT3G13560.2	O-Glycosyl hydrolases family 17 protein 	LOC_Os07g38930.5	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr4g134060.1	"Glycoside hydrolase, family 17; X8; "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2022.1.S1_s_at	A	A1TS	POPTR_0001s34170	POPTR_0001s34170 (11)	scaffold_1:32305618-32306583(-) (11)	NA	Q8MR62	Viral IAP-associated factor homolog	AT5G14240.1	Thioredoxin superfamily protein 	LOC_Os01g08960.1	"phosducin-like protein 3, putative, expressed"	Medtr2g038730.1	Thioredoxin fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2023.1.S1_s_at	A	A1TS	POPTR_0006s01890	POPTR_0006s01890 (11)	scaffold_6:1136863-1137315(-) (11)	NA	NA	NA	AT4G16400.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2026.1.S1_s_at	A	A1TS	POPTR_0008s09150	POPTR_0008s09150 (11)	scaffold_8:5672716-5673424(-) (11)	NA	Q9SC12	Eukaryotic translation initiation factor 5A	AT1G13950.1	eukaryotic elongation factor 5A-1 	LOC_Os12g32240.1	"eukaryotic translation initiation factor 5A, putative, expressed"	Medtr8g145440.1	"Translation protein SH3-like; Nucleic acid-binding, OB-fold, subgroup "	GO:0045905|positive regulation of translational termination||GO:0006452|translational frameshifting||GO:0045901|positive regulation of translational elongation||GO:0034645|cellular macromolecule biosynthetic process	GO:0043022|ribosome binding||GO:0003723|RNA binding||GO:0003746|translation elongation factor activity	NA
Ptp.2027.1.A1_at	A	A1TS	POPTR_0006s00460	POPTR_0006s00460 (11)	scaffold_6:220284-220439(-) (11)	NA	P0C8L4	Uncharacterized protein At4g26480	AT1G55790.1	Domain of unknown function (DUF2431) 	LOC_Os09g30210.1	expressed protein	Medtr2g033120.1	"Phenylalanyl-tRNA synthetase, class IIc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2028.1.S1_at	A	A1TS	POPTR_0004s24110	POPTR_0004s24110 (10)	scaffold_4:22844442-22844859(-) (10)	NA	P33543	Putative kinase-like protein TMKL1	AT5G07620.1	Protein kinase superfamily protein 	LOC_Os04g46320.1	"inactive receptor kinase At2g26730 precursor, putative, expressed"	Medtr8g050080.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2029.1.A1_at	A	A1TS	POPTR_0002s24090	POPTR_0002s24090 (11)	scaffold_2:21533297-21534075(-) (11)	NA	Q9FDW0	Protein FRIGIDA	AT5G48385.1	FRIGIDA-like protein 	LOC_Os09g07380.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.203.1.S1_s_at	A	A1TS	POPTR_0008s04070	POPTR_0008s04070 (11)	scaffold_8:2270774-2271039(+) (11)	NA	Q12893	Transmembrane protein 115	AT3G07950.1	rhomboid protein-related 	LOC_Os03g24390.1	"OsRhmbd8 - Putative Rhomboid homologue, expressed"	Medtr1g121420.1	"Transmembrane protein 115, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2031.1.S1_at	A	A1MS	POPTR_0002s08940	POPTR_0002s08940 (11)	scaffold_2:6319012-6319264(-) (11)	NA	NA	NA	AT4G08460.3	Protein of unknown function (DUF1644) 	LOC_Os02g53110.1	expressed protein	Medtr3g098400.1	Protein of unknown function DUF1644 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2032.1.A1_at	A	A1TS	POPTR_0015s14960	POPTR_0015s14960 (9)	scaffold_15:14359866-14360607(+) (9)	NA	Q93Y22	Coatomer subunit delta	AT5G05010.2	clathrin adaptor complexes medium subunit family protein 	LOC_Os05g24594.1	"coatomer subunit delta, putative, expressed"	Medtr2g122280.1	"Clathrin adaptor complex, medium chain "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030131|clathrin adaptor complex
Ptp.2033.1.A1_at	A	A1TS	POPTR_0005s23200	POPTR_0005s23200 (9)	scaffold_5:22037701-22038235(-) (9)	NA	Q8SSN5	"N-alpha-acetyltransferase 20, NatB catalytic subunit"	AT1G03150.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g49230.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g143670.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.2034.1.A1_at	A	A1TS	POPTR_0003s07610	POPTR_0003s07610 (9)	scaffold_3:9154857-9155530(+) (9)	NA	P49307	Rhizopine catabolism protein mocA	AT4G17370.1	Oxidoreductase family protein 	LOC_Os08g05280.1	"oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed"	Medtr8g105540.1	Bacterial glucose-fructose oxidoreductase 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2035.1.S1_s_at	A	A1TS	POPTR_0015s01160	POPTR_0015s01160 (11)	scaffold_15:717413-717912(-) (11)	NA	Q8LAP8	Dof zinc finger protein DOF4.6	AT4G24060.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os04g47990.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr2g111360.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2036.1.S1_at	A	A1TS	POPTR_0001s34020	POPTR_0001s34020 (9)	scaffold_1:32167362-32167464(+) (9)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT3G01840.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g093120.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2036.1.S1_s_at	A	A1TS	POPTR_0001s34020	POPTR_0001s34020 (11)	scaffold_1:32166956-32167322(+) (11)	NA	Q6R2J8	Protein STRUBBELIG-RECEPTOR FAMILY 8	AT3G01840.1	Protein kinase superfamily protein 	LOC_Os03g13080.1	"LYK, putative"	Medtr5g093120.1	Protein kinase; Peptidoglycan-binding LysM 	GO:0044260|cellular macromolecule metabolic process||GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2037.1.S1_x_at	A	A1TS	POPTR_0002s04420	POPTR_0002s04420 (11)	scaffold_2:2770733-2772629(+) (11)	NA	P31674	40S ribosomal protein S15	AT5G09500.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2039.1.S1_s_at	A	A1TS	POPTR_0014s01840	POPTR_0014s01840 (11)	scaffold_14:1695331-1696475(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2039.2.S1_x_at	A	A1TS	POPTR_0002s12100	POPTR_0002s12100 (11)	scaffold_2:8984936-8985883(-) (11)	NA	O64818	Uncharacterized protein At2g23090	AT2G23090.1	Uncharacterised protein family SERF 	LOC_Os07g02340.1	expressed protein	Medtr8g099300.1	"Chain A, Nmr Solution Structure Of The Partially Disordered Protein At2g23090 From, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.204.1.A1_at	A	A1TA	POPTR_0001s37630	POPTR_0001s37630 (10)	scaffold_1:36594089-36594413(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2046.1.A1_at	A	A1TS	POPTR_0002s03550	POPTR_0002s03550 (9)	scaffold_2:2210038-2210383(-) (9)	NA	Q54JC2	Uncharacterized protein DDB_G0288155	AT1G19580.1	gamma carbonic anhydrase 1 	LOC_Os12g07220.1	"bacterial transferase hexapeptide domain containing protein, expressed"	Medtr5g020760.1	Trimeric LpxA-like 	NA	GO:0016740|transferase activity	NA
Ptp.2048.2.S1_at	A	A1TS	POPTR_0014s07170	POPTR_0014s07170 (11)	scaffold_14:5423298-5424178(+) (11)	NA	NA	NA	AT4G00752.1	UBX domain-containing protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2048.3.A1_a_at	A	A1TS	POPTR_0014s07170	POPTR_0014s07170 (11)	scaffold_14:5426817-5427992(+) (11)	NA	NA	NA	AT4G00752.1	UBX domain-containing protein 	LOC_Os09g35710.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2049.1.A1_at	A	A1TS	POPTR_0012s00720	POPTR_0012s00720 (11)	scaffold_12:398086-398341(-) (11)	NA	NA	NA	AT3G49490.1	unknown protein; Has 722 Blast hits to 186 proteins in 64 species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi - 48; Plants - 38; Viruses - 0; Other Eukaryotes - 534 (source: NCBI BLink). 	NA	NA	Medtr3g122430.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.205.1.A1_at	A	A1TS	POPTR_0006s09200	POPTR_0006s09200 (11)	scaffold_6:6787959-6788099(+) (11)	NA	P93394	Uracil phosphoribosyltransferase	AT3G53900.2	uracil phosphoribosyltransferase 	LOC_Os05g38170.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.205.3.A1_s_at	A	A1TS	POPTR_0006s09200	POPTR_0006s09200 (11)	scaffold_6:6787561-6787736(+) (11)	NA	P93394	Uracil phosphoribosyltransferase	AT3G53900.2	uracil phosphoribosyltransferase 	LOC_Os05g38170.1	"phosphoribosyl transferase, putative, expressed"	Medtr8g109340.1	"Phosphoribosyltransferase; Excinuclease ABC, C subunit, C-terminal; Phosphoribulokinase/uridine kinase "	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	NA	NA
Ptp.2050.1.A1_s_at	A	A1TS	POPTR_0017s13810	POPTR_0017s13810 (11)	scaffold_17:14039005-14039693(+) (11)//scaffold_571:12542-13232(-) (10)	NA	P80317	T-complex protein 1 subunit zeta	AT3G02530.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os05g05470.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.2051.1.S1_at	A	A1TS	POPTR_0010s19940	POPTR_0010s19940 (11)	scaffold_10:17702647-17703484(+) (11)	NA	O04202	Eukaryotic translation initiation factor 3 subunit F	AT2G39990.1	eukaryotic translation initiation factor 2 	LOC_Os05g01450.1	"eukaryotic translation initiation factor 3 subunit F, putative, expressed"	Medtr5g089340.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2052.1.S1_at	A	A1TS	POPTR_0003s20450	POPTR_0003s20450 (11)	scaffold_3:18945690-18946056(+) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr2g117700.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2052.1.S1_s_at	A	A1TS	POPTR_0003s20450	POPTR_0003s20450 (11)	scaffold_3:18945811-18946027(+) (11)	NA	A3BDI8	Zinc finger A20 and AN1 domain-containing stress-associated protein 8	AT1G51200.4	A20/AN1-like zinc finger family protein 	LOC_Os06g41010.4	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr2g117700.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2053.1.A1_at	A	A1TS	POPTR_0001s36720	POPTR_0001s36720 (11)	scaffold_1:35443158-35443318(+) (11)	NA	Q9S9Q9	BTB/POZ domain-containing protein At1g30440	AT1G30440.1	Phototropic-responsive NPH3 family protein 	LOC_Os03g43990.1	"BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr2g055630.1	"BTB/POZ; Superoxide dismutase, copper/zinc binding; NPH3 "	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.2054.1.S1_s_at	A	A1TS	POPTR_0003s17980	POPTR_0003s17980 (11)	scaffold_3:17213099-17214033(+) (11)	NA	Q9XES5	Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase	AT1G15950.1	cinnamoyl coa reductase 1 	LOC_Os08g34280.1	"cinnamoyl-CoA reductase, putative, expressed"	Medtr4g022160.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2055.1.S1_at	A	A1TS	POPTR_0013s06220	POPTR_0013s06220 (9)	scaffold_13:4609904-4611379(+) (9)	NA	NA	NA	AT5G17840.1	DnaJ/Hsp40 cysteine-rich domain superfamily protein 	LOC_Os03g45344.1	expressed protein	Medtr7g103500.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2056.1.S1_s_at	A	A1TS	POPTR_0002s25450	POPTR_0002s25450 (11)	scaffold_2:22504740-22505611(-) (11)	NA	A1A5K2	CLIP-associating protein 1-B	AT2G20190.1	CLIP-associated protein 	LOC_Os04g42840.1	"HEAT repeat family protein, putative, expressed"	Medtr7g117940.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2058.2.A1_a_at	A	A1TS	POPTR_0012s07470	POPTR_0012s07470 (11)	scaffold_12:8390635-8392675(+) (11)	NA	Q9LV17	Transcription factor bHLH79	AT5G62610.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os07g09590.1	"bHLH transcription factor, putative"	Medtr8g074580.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.2062.1.A1_at	A	A1TS	POPTR_0012s03790	POPTR_0012s03790 (11)	scaffold_12:3031157-3032408(+) (11)	NA	O04059	"Putative 3,4-dihydroxy-2-butanone kinase"	AT3G17770.1	Dihydroxyacetone kinase 	LOC_Os03g51000.2	"3,4-dihydroxy-2-butanone kinase, putative, expressed"	Medtr6g077160.1	Dihydroxyacetone kinase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0004371|glycerone kinase activity	NA
Ptp.2063.1.A1_s_at	A	A1TS	POPTR_0001s23520	POPTR_0001s23520 (11)	scaffold_1:22915465-22915791(+) (11)	POPTR_0009s02770 (6)	Q86HW6	Probable serine/threonine-protein kinase DDB_G0276461	AT2G32850.2	Protein kinase superfamily protein 	LOC_Os02g37880.3	"cyclin G-associated kinase, putative, expressed"	Medtr8g115300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2064.1.S1_at	A	A1TS	POPTR_0013s02950	POPTR_0013s02950 (11)	scaffold_13:1791355-1791590(+) (11)	NA	Q9ZNV9	Histidine-containing phosphotransfer protein 1	AT3G21510.1	histidine-containing phosphotransmitter 1 	LOC_Os08g44350.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr1g098840.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
Ptp.2065.1.A1_at	A	A1TS	POPTR_0001s10120	POPTR_0001s10120 (11)	scaffold_1:7830601-7830783(-) (11)	NA	P13240	Disease resistance response protein 206	AT4G23690.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44930.1	"dirigent, putative, expressed"	Medtr8g137520.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2066.1.S1_s_at	A	A1TS	POPTR_0003s11920	POPTR_0003s11920 (11)	scaffold_3:12642763-12644746(-) (11)	NA	O64644	Histone deacetylase complex subunit SAP18	AT2G45640.1	SIN3 associated polypeptide P18 	LOC_Os02g02960.4	"histone deacetylase complex subunit SAP18, putative, expressed"	AC233100_3.1	Sin3 associated polypeptide p18 AC233100.6 16242-12510 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2069.1.S1_at	A	A1TS	POPTR_0008s16760	POPTR_0008s16760 (9)	scaffold_8:11284565-11289166(+) (9)	NA	Q6TGC6	Serine/threonine-protein kinase CBK1	AT4G14350.3	"AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein "	LOC_Os05g43570.3	"AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr1g090450.1	"Protein kinase, C-terminal; Tyrosine protein kinase "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004674|protein serine/threonine kinase activity||GO:0005524|ATP binding	NA
Ptp.2070.1.S1_s_at	A	A1TS	POPTR_0001s34530	POPTR_0001s34530 (11)	scaffold_1:32703929-32704449(+) (11)	NA	Q96PB1	CAS1 domain-containing protein 1	AT2G34410.2	O-acetyltransferase family protein 	LOC_Os01g44040.1	"CAS1 domain-containing protein 1 precursor, putative, expressed"	Medtr8g136610.1	Cas1p-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2071.1.S1_at	A	A1TS	POPTR_0009s10220	POPTR_0009s10220 (9)	scaffold_9:8835615-8835940(+) (9)	NA	P42731	Polyadenylate-binding protein 2	AT1G49760.2	poly(A) binding protein 8 	LOC_Os04g42600.2	"polyadenylate-binding protein, putative, expressed"	Medtr4g130250.1	"Polyadenylate binding protein, human types 1, 2, 3, 4 "	NA	GO:0003723|RNA binding	NA
Ptp.2072.1.S1_at	A	A1TS	POPTR_0010s21600	POPTR_0010s21600 (11)	scaffold_10:18813502-18813834(+) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2072.2.S1_s_at	A	A2TS	POPTR_0008s05160	POPTR_0008s05160 (11)//POPTR_0010s21600 (11)	scaffold_10:18811566-18812854(+) (11)//scaffold_8:2997157-2998385(-) (11)	NA	P28186	Ras-related protein ARA-3	AT3G46060.3	RAB GTPase homolog 8A 	LOC_Os07g13530.1	"ras-related protein, putative, expressed"	Medtr1g081200.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2077.1.S1_s_at	A	A1TS	POPTR_0001s34500	POPTR_0001s34500 (11)	scaffold_1:32620506-32621163(+) (11)	NA	Q5RBT0	Programmed cell death protein 5	AT1G29850.1	double-stranded DNA-binding family protein 	LOC_Os05g47446.1	expressed protein	NA	NA	NA	GO:0003677|DNA binding	NA
Ptp.2078.2.S1_s_at	A	A1TS	POPTR_0010s09490	POPTR_0010s09490 (11)	scaffold_10:10294828-10296888(+) (11)	NA	O23714	Proteasome subunit beta type-2-A	AT3G22630.1	20S proteasome beta subunit D1 	LOC_Os03g48930.1	"peptidase, T1 family, putative, expressed"	Medtr5g007000.1	"20S proteasome, A and B subunits "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.2079.1.A1_at	A	A1TS	POPTR_0001s08250	POPTR_0001s08250 (9)	scaffold_1:6296130-6296626(+) (9)	NA	NA	NA	AT1G12450.1	SNARE associated Golgi protein family 	LOC_Os07g28440.1	"SNARE associated Golgi protein, putative, expressed"	Medtr8g106510.1	"F5O11.19, related, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2081.1.A1_s_at	A	A1TS	POPTR_0002s07290	POPTR_0002s07290 (11)	scaffold_2:4980391-4981053(-) (11)	NA	P25141	Alcohol dehydrogenase 1	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2083.1.A1_at	A	A1TS	POPTR_0002s19720	POPTR_0002s19720 (10)	scaffold_2:15656434-15656653(-) (10)	NA	P24068	Ocs element-binding factor 1	AT3G62420.1	basic region/leucine zipper motif 53 	LOC_Os12g37415.1	expressed protein	Medtr1g106720.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.2084.1.S1_s_at	A	A1TS	POPTR_0005s07860	POPTR_0005s07860 (11)	scaffold_5:5391016-5391249(-) (11)	NA	NA	NA	AT2G22170.1	"Lipase/lipooxygenase, PLAT/LH2 family protein "	LOC_Os06g11812.1	"wound/stress protein, putative, expressed"	Medtr3g101350.1	"Lipase/lipooxygenase, PLAT/LH2 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2085.2.S1_s_at	A	A2TS	POPTR_0002s09770	POPTR_0002s09770 (11)//POPTR_0005s17120 (11)	scaffold_2:7005602-7005651(-) (11)//scaffold_5:14262859-14262908(-) (11)	NA	P93212	14-3-3 protein 7	AT1G26480.1	general regulatory factor 12 	LOC_Os03g50290.3	"14-3-3 protein, putative, expressed"	Medtr4g115400.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.2087.1.S1_s_at	A	A1TS	POPTR_0008s16840	POPTR_0008s16840 (11)	scaffold_8:11325831-11325931(-) (11)	NA	Q9T043	60S ribosomal protein L14-2	AT4G27090.1	Ribosomal protein L14 	LOC_Os02g40880.1	"ribosomal protein L14, putative, expressed"	Medtr8g138420.1	Ribosomal protein L14 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2089.1.S1_x_at	A	A1TS	POPTR_0010s22410	POPTR_0010s22410 (11)	scaffold_10:19348660-19349598(-) (11)	NA	P46297	40S ribosomal protein S23	AT5G02960.1	Ribosomal protein S12/S23 family protein 	LOC_Os03g60400.1	"40S ribosomal protein S23, putative, expressed"	Medtr7g120920.1	"Ribosomal protein S23, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.209.1.S1_s_at	A	A1TS	POPTR_0004s20450	POPTR_0004s20450 (11)	scaffold_4:20015255-20015618(-) (11)	NA	O42395	Cellular nucleic acid-binding protein	AT3G43590.1	zinc knuckle (CCHC-type) family protein 	LOC_Os11g36480.2	"zinc knuckle domain containing protein, expressed"	Medtr3g110690.1	"Zinc finger, CCHC-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2091.1.S1_at	A	A1TS	POPTR_0015s13200	POPTR_0015s13200 (11)	scaffold_15:13259139-13259634(-) (11)	NA	Q5RAI8	Cleavage and polyadenylation specificity factor subunit 5	AT4G25550.1	"Cleavage/polyadenylation specificity factor, 25kDa subunit "	LOC_Os04g58640.1	"cleavage and polyadenylation specificity factor subunit 5, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2093.1.S1_at	A	A1TS	POPTR_0004s23140	POPTR_0004s23140 (11)	scaffold_4:21907878-21911870(-) (11)	NA	Q93W20	"NifU-like protein 2, chloroplastic"	AT5G49940.1	NIFU-like protein 2 	LOC_Os11g07916.1	"nifU, putative, expressed"	Medtr2g041590.1	"Nitrogen-fixing NifU, C-terminal "	GO:0016226|iron-sulfur cluster assembly	GO:0051536|iron-sulfur cluster binding||GO:0005506|iron ion binding	NA
Ptp.2094.3.S1_a_at	A	A1TS	POPTR_0008s16790	POPTR_0008s16790 (11)	scaffold_8:11299669-11300304(+) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G14340.1	casein kinase I 	LOC_Os02g40860.1	"CK1_CaseinKinase_1.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2095.1.S1_at	A	A1TS	POPTR_0010s06750	POPTR_0010s06750 (11)	scaffold_10:8032742-8034509(+) (11)	NA	Q54I90	"NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial"	AT5G08530.1	51 kDa subunit of complex I 	LOC_Os07g45090.1	"NADH-ubiquinone oxidoreductase 51 kDa subunit, mitochondrial precursor, putative, expressed"	Medtr1g043800.1	"Respiratory-chain NADH dehydrogenase, 51 kDa subunit "	NA	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051287|NAD or NADH binding||GO:0010181|FMN binding||GO:0051539|""4 iron, 4 sulfur cluster binding"""	NA
Ptp.2097.1.S1_s_at	A	A3TS	POPTR_0014s19300	POPTR_0014s19300 (11)//POPTR_0014s19510 (11)//POPTR_0014s19070 (10)	scaffold_14:16826099-16826431(-) (10)//scaffold_14:17202190-17202522(-) (11)//scaffold_14:17327976-17328308(+) (11)//scaffold_14:17362402-17362734(+) (11)	POPTR_0014s19530 (8)	O95243	Methyl-CpG-binding domain protein 4	AT3G07930.3	DNA glycosylase superfamily protein 	LOC_Os09g01290.1	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	NA	NA	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
Ptp.2097.2.S1_at	A	A1TS	POPTR_0014s19510	POPTR_0014s19510 (11)	scaffold_14:17328430-17328637(+) (11)//scaffold_14:17362856-17363063(+) (11)	NA	O95243	Methyl-CpG-binding domain protein 4	AT3G07930.3	DNA glycosylase superfamily protein 	LOC_Os09g01290.2	"hhH-GPD superfamily base excision DNA repair protein, putative, expressed"	NA	NA	GO:0006284|base-excision repair||GO:0033554|cellular response to stress||GO:0044260|cellular macromolecule metabolic process||GO:0006974|response to DNA damage stimulus	NA	NA
Ptp.2098.2.S1_at	A	A1TS	POPTR_0002s10480	POPTR_0002s10480 (11)	scaffold_2:7562308-7562344(-) (11)	NA	Q766C3	Aspartic proteinase nepenthesin-1	AT1G09750.1	Eukaryotic aspartyl protease family protein 	LOC_Os03g08790.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr3g149190.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2099.1.S1_s_at	A	A1TS	POPTR_0008s09430	POPTR_0008s09430 (9)	scaffold_8:5840879-5841157(-) (9)	NA	Q7Z494	Nephrocystin-3	AT3G27960.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os02g47880.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr8g125600.1	"kinesin light chain-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.21.1.S1_s_at	A	A1TS	POPTR_0004s20020	POPTR_0004s20020 (9)	scaffold_4:19673006-19673120(+) (9)	NA	Q6V9I6	Histone deacetylase HDT1	AT3G44750.2	histone deacetylase 3 	LOC_Os05g51830.1	"ZOS5-12 - C2H2 zinc finger protein, expressed"	Medtr4g073420.1	"Histone deacetylase HDT1, related "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.2101.1.S1_at	A	A1TS	POPTR_0005s23280	POPTR_0005s23280 (11)	scaffold_5:22104001-22104988(+) (11)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2101.1.S1_x_at	A	A1TS	POPTR_0005s23280	POPTR_0005s23280 (11)	scaffold_5:22104001-22105088(+) (11)	NA	P34788	40S ribosomal protein S18	AT4G09800.1	S18 ribosomal protein 	LOC_Os07g07709.1	"ribosomal protein S13p/S18e, putative, expressed"	Medtr1g124700.1	Ribosomal protein S13 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2102.1.S1_s_at	A	A1TS	POPTR_0014s14370	POPTR_0014s14370 (10)	scaffold_14:10522502-10522871(-) (10)	NA	Q9MA41	Chitinase-like protein 1	AT1G05850.1	Chitinase family protein 	LOC_Os09g32080.2	"CHIT13 - Chitinase family protein precursor, expressed"	Medtr7g021450.1	"Glycoside hydrolase, family 19 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity	NA
Ptp.2104.1.A1_s_at	A	A1TS	POPTR_0003s15220	POPTR_0003s15220 (11)	scaffold_3:15071901-15072370(-) (11)	NA	Q9Y253	DNA polymerase eta	AT5G44740.2	Y-family DNA polymerase H 	LOC_Os01g55300.1	"DNA-directed polymerase, putative, expressed"	AC235671_13.1	UMUC-like DNA-repair protein AC235671.2 55734-58183 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006281|DNA repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003887|DNA-directed DNA polymerase activity||GO:0003684|damaged DNA binding	NA
Ptp.2105.1.S1_s_at	A	A1TS	POPTR_0016s13970	POPTR_0016s13970 (11)	scaffold_16:13204688-13205805(-) (11)	NA	Q94AL9	"Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial"	AT2G38400.1	alanine:glyoxylate aminotransferase 3 	LOC_Os05g39770.1	"aminotransferase, putative, expressed"	Medtr7g077840.1	Aminotransferase class-III; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2106.1.A1_s_at	A	A1TS	POPTR_0001s32950	POPTR_0001s32950 (11)	scaffold_1:31220074-31220678(+) (11)	NA	Q8VEM8	"Phosphate carrier protein, mitochondrial"	AT5G14040.1	phosphate transporter 3;1 	LOC_Os02g52860.1	"phosphate carrier protein, mitochondrial precursor, putative, expressed"	Medtr7g096810.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2107.1.S1_at	A	A1TS	POPTR_0015s14510	POPTR_0015s14510 (11)	scaffold_15:14068270-14068582(-) (11)	NA	P49200	40S ribosomal protein S20-1	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g14530.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2107.1.S1_x_at	A	A1TS	POPTR_0015s14510	POPTR_0015s14510 (11)	scaffold_15:14068270-14068582(-) (11)	NA	P49200	40S ribosomal protein S20-1	AT5G62300.2	Ribosomal protein S10p/S20e family protein 	LOC_Os03g14530.1	"S10/S20 domain containing ribosomal protein, putative, expressed"	Medtr7g111380.1	"Ribosomal protein S10, eukaryotic and archaeal form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2108.1.S1_at	A	A1TS	POPTR_0019s08300	POPTR_0019s08300 (11)	scaffold_19:9785395-9785472(-) (11)	NA	P53665	"Acyl carrier protein, mitochondrial"	AT1G65290.1	mitochondrial acyl carrier protein 2 	LOC_Os03g22950.1	"acyl carrier protein, putative, expressed"	Medtr7g090000.1	Acyl carrier protein-like 	NA	GO:0048037|cofactor binding	NA
Ptp.2109.1.A1_at	A	A1TS	POPTR_0003s18990	POPTR_0003s18990 (11)	scaffold_3:17854775-17855225(-) (11)	NA	Q9M612	Nascent polypeptide-associated complex subunit alpha-like protein	AT3G12390.1	"Nascent polypeptide-associated complex (NAC), alpha subunit family protein "	LOC_Os01g71230.1	"nascent polypeptide-associated complex subunit alpha-like protein 3, putative, expressed"	Medtr7g105560.1	Ubiquitin-associated; Nascent polypeptide-associated complex NAC 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.211.1.A1_at	A	A1TS	POPTR_0002s19840	POPTR_0002s19840 (11)	scaffold_2:15761064-15761457(+) (11)	NA	NA	NA	AT4G02100.1	Heat shock protein DnaJ with tetratricopeptide repeat 	LOC_Os07g49000.1	"DNAJ heat shock N-terminal domain-containing protein, putative, expressed"	Medtr7g132780.1	"Heat shock protein DnaJ, N-terminal; Tetratricopeptide-like helical "	NA	GO:0031072|heat shock protein binding	NA
Ptp.2112.1.S1_at	A	A1TS	POPTR_0007s05200	POPTR_0007s05200 (11)	scaffold_7:3353769-3354168(+) (11)	NA	Q7T3H7	Mediator of RNA polymerase II transcription subunit 18	AT2G22370.1	unknown protein; Has 127 Blast hits to 127 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os02g10050.1	expressed protein	Medtr5g047410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2115.1.S1_at	A	A1TS	POPTR_0006s07950	POPTR_0006s07950 (11)	scaffold_6:5809992-5812076(+) (11)	NA	O60925	Prefoldin subunit 1	AT2G07340.1	PREFOLDIN 1 	LOC_Os02g26440.1	"prefoldin subunit, putative, expressed"	Medtr8g042790.1	Prefoldin 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.2116.1.A1_at	A	A1TS	POPTR_0005s02660	POPTR_0005s02660 (11)	scaffold_5:1704495-1705136(+) (11)	NA	Q94F49	Probable histone H2A.5	AT5G27670.1	histone H2A 7 	LOC_Os05g02300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr7g138960.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2118.1.S1_s_at	A	A1TS	POPTR_0009s14000	POPTR_0009s14000 (11)	scaffold_9:11057235-11057679(+) (11)	NA	Q9SZN1	V-type proton ATPase subunit B2	AT4G38510.5	"ATPase, V1 complex, subunit B protein "	LOC_Os01g51380.2	"ATP synthase, putative, expressed"	Medtr7g092560.1	ATPase FliI/YscN 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.2119.1.S1_at	A	A1TS	POPTR_0010s24120	POPTR_0010s24120 (11)	scaffold_10:20492039-20493581(+) (11)	NA	O74978	Uncharacterized RNA-binding protein C1827.05c	AT5G04600.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g31810.3	"RNA recognition motif containing protein, putative, expressed"	Medtr1g137330.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.212.1.A1_a_at	A	A2TS	POPTR_0011s05800	POPTR_0011s05800 (11)//POPTR_0011s05830 (11)	scaffold_11:5820907-5821061(-) (11)//scaffold_11:5841093-5841244(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2120.1.S1_at	A	A1TS	POPTR_0005s02130	POPTR_0005s02130 (11)	scaffold_5:1395279-1395781(-) (11)	NA	Q9LD55	Eukaryotic translation initiation factor 3 subunit A	AT4G11420.1	eukaryotic translation initiation factor 3A 	LOC_Os01g03070.2	"transposon protein, putative, unclassified, expressed"	Medtr7g118360.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2121.1.S1_x_at	A	A1TS	POPTR_0005s11780	POPTR_0005s11780 (11)	scaffold_5:8568670-8568771(-) (11)	NA	Q42064	60S ribosomal protein L8-3	AT4G36130.1	Ribosomal protein L2 family 	LOC_Os12g38000.1	"60S ribosomal protein L8, putative, expressed"	Medtr7g084800.1	Elongation factor P-like protein YeiP 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2122.2.S1_a_at	A	A1TS	POPTR_0001s44430	POPTR_0001s44430 (11)	scaffold_1:44841862-44843630(-) (11)	NA	Q5ZI57	Trafficking protein particle complex subunit 3	AT5G54750.1	Transport protein particle (TRAPP) component 	LOC_Os07g44790.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr4g110910.1	"Transport protein particle (TRAPP) component, Bet3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2124.1.A1_s_at	A	A1TS	POPTR_0015s15330	POPTR_0015s15330 (11)	scaffold_15:14647056-14647466(-) (11)	NA	NA	NA	AT2G35150.1	EXORDIUM like 1 	LOC_Os07g31430.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g038950.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2127.1.S1_at	A	A1TS	POPTR_0002s02310	POPTR_0002s02310 (11)	scaffold_2:1301424-1301791(-) (11)	NA	Q39613	Peptidyl-prolyl cis-trans isomerase	AT2G16600.1	rotamase CYP 3 	LOC_Os02g02890.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr4g100810.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.2129.1.S1_at	A	A1TS	POPTR_0010s24900	POPTR_0010s24900 (10)	scaffold_10:20857819-20858399(-) (10)	NA	NA	NA	AT5G04840.1	bZIP protein 	LOC_Os02g33560.1	expressed protein	Medtr4g137230.1	"bZIP transcription factor, bZIP_1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.213.1.S1_a_at	A	A1TS	POPTR_0010s13010	POPTR_0010s13010 (11)	scaffold_10:12926115-12926822(+) (11)	NA	NA	NA	AT2G01220.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g49670.1	"cytidylyltransferase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.213.1.S1_s_at	A	A1TS	POPTR_0010s13010	POPTR_0010s13010 (10)	scaffold_10:12925044-12925662(+) (10)	NA	NA	NA	AT2G01220.2	Nucleotidylyl transferase superfamily protein 	LOC_Os01g49670.1	"cytidylyltransferase domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2130.1.S1_s_at	A	A1TS	POPTR_0002s01080	POPTR_0002s01080 (11)	scaffold_2:567918-568453(-) (11)	NA	P17598	Catalase isozyme 1	AT4G35090.1	catalase 2 	LOC_Os03g03910.1	"catalase domain containing protein, expressed"	NA	NA	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004096|catalase activity	NA
Ptp.2131.1.S1_s_at	A	A1TS	POPTR_0019s08070	POPTR_0019s08070 (11)	scaffold_19:9443366-9443647(+) (11)	NA	NA	NA	AT3G02790.1	zinc finger (C2H2 type) family protein 	LOC_Os06g49490.1	"ZOS6-10 - C2H2 zinc finger protein, expressed"	Medtr7g089600.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2132.2.A1_a_at	A	A1TS	POPTR_0009s06640	POPTR_0009s06640 (11)	scaffold_9:6377701-6381638(-) (11)	NA	P22778	"ATP synthase subunit O, mitochondrial"	AT5G13450.1	delta subunit of Mt ATP synthase 	LOC_Os06g43850.1	"ATP synthase F1, delta subunit family protein, putative, expressed"	NA	NA	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0045261|""proton-transporting ATP synthase complex, catalytic core F(1)""||GO:0005886|plasma membrane"
Ptp.2133.1.S1_s_at	A	A1TS	POPTR_0016s12260	POPTR_0016s12260 (11)	scaffold_16:11606762-11607050(-) (11)	NA	Q9XF88	"Chlorophyll a-b binding protein CP29.2, chloroplastic"	AT3G08940.2	light harvesting complex photosystem II 	LOC_Os07g37240.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr4g012910.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2134.2.S1_at	A	A1TS	POPTR_0010s08900	POPTR_0010s08900 (11)	scaffold_10:9700023-9700580(-) (11)	NA	Q09867	rRNA-processing protein efg1	AT1G04230.1	Protein of unknown function (DUF2361) 	LOC_Os03g58340.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2135.1.A1_at	A	A1TS	POPTR_0002s24530	POPTR_0002s24530 (11)	scaffold_2:21893888-21894090(+) (11)	NA	NA	NA	AT3G07120.1	RING/U-box superfamily protein 	LOC_Os01g68900.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr3g087330.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2137.1.S1_at	A	A1TS	POPTR_0014s02930	POPTR_0014s02930 (11)	scaffold_14:2417232-2418153(+) (11)	NA	P97852	Peroxisomal multifunctional enzyme type 2	AT5G42890.1	sterol carrier protein 2 	LOC_Os02g52720.1	"peroxisomal multifunctional enzyme type 2, putative"	Medtr1g024360.1	Short-chain dehydrogenase/reductase SDR; Sterol-binding 	NA	NA	NA
Ptp.2138.1.S1_s_at	A	A1TS	POPTR_0003s16960	POPTR_0003s16960 (11)	scaffold_3:16457594-16458658(+) (11)	NA	NA	NA	AT1G27330.1	Ribosome associated membrane protein RAMP4 	LOC_Os11g41875.2	"membrane protein, putative, expressed"	Medtr2g030550.1	Ribosome associated membrane RAMP4 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2139.1.S1_a_at	A	A1TS	POPTR_0001s38560	POPTR_0001s38560 (11)	scaffold_1:37763855-37765150(-) (11)	NA	Q9ZP06	"Malate dehydrogenase 1, mitochondrial"	AT1G53240.1	Lactate/malate dehydrogenase family protein 	LOC_Os01g46070.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.214.1.A1_s_at	A	A1TS	POPTR_0001s47350	POPTR_0001s47350 (11)	scaffold_1:47581389-47581642(+) (11)	NA	Q1LUT1	Enhancer of mRNA-decapping protein 4	AT3G13300.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os06g19660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g080420.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2141.1.A1_s_at	A	A1TS	POPTR_0018s07050	POPTR_0018s07050 (9)	scaffold_18:7212164-7212529(-) (9)	NA	Q9LTR9	Glycylpeptide N-tetradecanoyltransferase 1	AT5G57020.1	myristoyl-CoA:protein N-myristoyltransferase 	LOC_Os01g51170.1	"glycylpeptide N-tetradecanoyltransferase 1, putative, expressed"	Medtr2g046620.1	Myristoyl-CoA:protein N-myristoyltransferase 	GO:0006499|N-terminal protein myristoylation	GO:0004379|glycylpeptide N-tetradecanoyltransferase activity	NA
Ptp.2142.1.S1_s_at	A	A1TS	POPTR_0001s12840	POPTR_0001s12840 (11)	scaffold_1:9961066-9961824(-) (11)	NA	Q9M2F1	40S ribosomal protein S27-2	AT3G61110.1	ribosomal protein S27 	LOC_Os04g27860.1	"40S ribosomal protein S27, putative"	Medtr2g019110.1	Ribosomal protein S27E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2145.1.A1_at	A	A1TS	POPTR_0016s14360	POPTR_0016s14360 (11)	scaffold_16:13606452-13607545(+) (11)	NA	B1XKV1	Elongation factor P	AT3G08740.1	elongation factor P (EF-P) family protein 	LOC_Os12g02380.1	"elongation factor P, putative, expressed"	Medtr7g080370.1	Elongation factor P/YeiP; Elongation factor P-like protein YeiP; ; ; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	NA
Ptp.2147.2.S1_s_at	A	A1TS	POPTR_0014s13760	POPTR_0014s13760 (11)	scaffold_14:10081012-10083070(+) (11)	NA	Q84Y95	"Monothiol glutaredoxin-S14, chloroplastic"	AT3G54900.1	CAX interacting protein 1 	LOC_Os03g63420.1	"OsGrx_S14 - glutaredoxin subgroup II, expressed"	Medtr7g089300.1	Glutaredoxin-related protein; Glutaredoxin active site 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.2148.1.S1_at	A	A1TS	POPTR_0001s11600	POPTR_0001s11600 (11)	scaffold_1:9014821-9014939(+) (11)	POPTR_0003s14870 (7)	Q9SHE8	"Photosystem I reaction center subunit III, chloroplastic"	AT1G31330.1	photosystem I subunit F 	LOC_Os03g56670.2	"photosystem I reaction center subunit III, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
Ptp.2148.1.S1_s_at	A	A1TS	POPTR_0001s11600	POPTR_0001s11600 (11)	scaffold_1:9014664-9014827(+) (11)	NA	Q9SHE8	"Photosystem I reaction center subunit III, chloroplastic"	AT1G31330.1	photosystem I subunit F 	LOC_Os03g56670.2	"photosystem I reaction center subunit III, chloroplast precursor, putative, expressed"	NA	NA	GO:0015979|photosynthesis	NA	GO:0009538|photosystem I reaction center
Ptp.2150.1.S1_at	A	A1TS	POPTR_0006s10150	POPTR_0006s10150 (10)	scaffold_6:7538386-7538992(-) (10)	NA	NA	NA	AT3G08920.1	Rhodanese/Cell cycle control phosphatase superfamily protein 	LOC_Os03g18020.1	"rhodanese-like family protein, putative, expressed"	AC235756_2.1	Rhodanese-like AC235756.1 14706-16792 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2151.1.S1_s_at	A	A1TS	POPTR_0010s21840	POPTR_0010s21840 (11)	scaffold_10:18980875-18983772(-) (11)	NA	Q9FRL8	Glutathione S-transferase DHAR2	AT1G75270.1	dehydroascorbate reductase 2 	LOC_Os05g02530.1	"glutathione S-transferase, N-terminal domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2152.1.S1_s_at	A	A1TS	POPTR_0001s25990	POPTR_0001s25990 (11)	scaffold_1:25092251-25092610(+) (11)	NA	Q9STZ2	SelT-like protein	AT3G47300.1	SELT-like protein precursor 	LOC_Os01g61580.1	"selT-like protein precursor, putative, expressed"	Medtr4g013030.1	SelT/selW/selH selenoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2153.1.S1_at	A	A1TS	POPTR_0001s36650	POPTR_0001s36650 (10)	scaffold_1:35333775-35334220(+) (10)	NA	Q9FLP0	65-kDa microtubule-associated protein 1	AT5G55230.1	microtubule-associated proteins 65-1 	LOC_Os06g20370.1	"microtubule associated protein, putative, expressed"	Medtr5g101260.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2155.1.S1_s_at	A	A1TS	POPTR_0001s39950	POPTR_0001s39950 (11)	scaffold_1:39234419-39234719(+) (11)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.2156.1.S1_s_at	A	A1TS	POPTR_0002s13970	POPTR_0002s13970 (11)	scaffold_2:10357224-10357994(-) (11)	NA	P39207	Nucleoside diphosphate kinase 1	AT4G09320.1	Nucleoside diphosphate kinase family protein 	LOC_Os10g41410.2	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
Ptp.2158.1.S1_at	A	A1TS	POPTR_0006s25180	POPTR_0006s25180 (11)	scaffold_6:23607066-23608586(+) (11)	NA	Q8GSL5	Profilin	AT4G29340.1	profilin 4 	LOC_Os10g17680.1	"profilin domain containing protein, expressed"	Medtr4g160100.1	Plant profilin 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	GO:0015629|actin cytoskeleton
Ptp.2159.1.S1_at	A	A1TS	POPTR_0015s07340	POPTR_0015s07340 (11)	scaffold_15:8515148-8515707(+) (11)	NA	P27521	"Chlorophyll a-b binding protein 4, chloroplastic"	AT3G47470.1	light-harvesting chlorophyll-protein complex I subunit A4 	LOC_Os08g33820.1	"chlorophyll A-B binding protein, putative, expressed"	AC233662_10.1	Chlorophyll A-B binding protein AC233662.1 39478-42517 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2159.1.S1_s_at	A	A1TS	POPTR_0015s07340	POPTR_0015s07340 (11)	scaffold_15:8515092-8515504(+) (11)	NA	P27521	"Chlorophyll a-b binding protein 4, chloroplastic"	AT3G47470.1	light-harvesting chlorophyll-protein complex I subunit A4 	LOC_Os08g33820.1	"chlorophyll A-B binding protein, putative, expressed"	AC233662_10.1	Chlorophyll A-B binding protein AC233662.1 39478-42517 E EGN_Mt090430 200	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.216.1.A1_at	A	A1TS	POPTR_0006s23730	POPTR_0006s23730 (11)	scaffold_6:22441209-22441324(-) (11)	NA	NA	NA	AT1G02180.1	ferredoxin-related 	LOC_Os08g35710.1	expressed protein	Medtr3g139260.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2160.1.A1_at	A	A1TS	POPTR_0001s37470	POPTR_0001s37470 (11)	scaffold_1:36451757-36452346(+) (11)	NA	NA	NA	AT5G55610.1	"unknown protein; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). "	LOC_Os12g31490.1	expressed protein	Medtr4g129710.1	"receptor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2161.1.S1_s_at	A	A1TS	POPTR_0001s39590	POPTR_0001s39590 (11)	scaffold_1:38812905-38813268(+) (11)	NA	Q54XK2	Protein transport protein Sec61 subunit alpha	AT2G34250.2	SecY protein transport family protein 	LOC_Os03g11440.1	"protein transport protein Sec61 subunit alpha, putative, expressed"	Medtr8g092670.1	SecY protein; ABC transporter related 	GO:0015031|protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0016020|membrane
Ptp.2162.1.S1_at	A	A1TS	POPTR_0001s24910	POPTR_0001s24910 (11)	scaffold_1:24179477-24180297(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2162.1.S1_s_at	A	A1TS	POPTR_0001s24910	POPTR_0001s24910 (11)	scaffold_1:24179635-24179962(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2162.2.S1_s_at	A	A1TS	POPTR_0001s24910	POPTR_0001s24910 (11)	scaffold_1:24180392-24181155(-) (11)	NA	Q09893	Uncharacterized protein C24B11.05	AT5G59480.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os01g74152.1	"haloacid dehalogenase-like hydrolase family protein, putative, expressed"	Medtr2g117030.1	"HAD-superfamily hydrolase subfamily IA, variant 3 "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2163.1.S1_at	A	A2TS	POPTR_0011s14540	POPTR_0011s14540 (11)//POPTR_0011s14550 (11)	scaffold_11:16914517-16914863(+) (11)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.2163.1.S1_x_at	A	A2TS	POPTR_0011s14540	POPTR_0011s14540 (11)//POPTR_0011s14550 (11)	scaffold_11:16914517-16914863(+) (11)	NA	P06183	"Photosystem II 10 kDa polypeptide, chloroplastic"	AT1G79040.1	photosystem II subunit R 	LOC_Os07g05365.1	"photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed"	Medtr2g077120.1	Photosystem II protein PsbR 	GO:0015979|photosynthesis	NA	GO:0009654|oxygen evolving complex||GO:0042651|thylakoid membrane
Ptp.2164.1.S1_s_at	A	A1TS	POPTR_0018s02470	POPTR_0018s02470 (11)	scaffold_18:2270980-2271426(+) (11)	NA	Q9SAH7	Probable WRKY transcription factor 40	AT1G80840.1	WRKY DNA-binding protein 40 	LOC_Os02g08440.1	"OsWRKY71 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g138240.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.2165.1.S1_at	A	A1TS	POPTR_0002s19010	POPTR_0002s19010 (11)	scaffold_2:14921745-14922206(+) (11)	NA	P07369	"Chlorophyll a-b binding protein 3C, chloroplastic"	AT2G34430.1	light-harvesting chlorophyll-protein complex II subunit B1 	LOC_Os09g17740.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr6g012740.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2166.1.S1_s_at	A	A1TS	POPTR_0001s12960	POPTR_0001s12960 (11)	scaffold_1:10051054-10051490(-) (11)	NA	P51132	"Cytochrome b-c1 complex subunit Rieske-2, mitochondrial"	AT5G13430.1	Ubiquinol-cytochrome C reductase iron-sulfur subunit 	LOC_Os02g32120.1	"cytochrome b-c1 complex subunit Rieske, mitochondrial precursor, putative, expressed"	Medtr7g097200.1	Ubiquinol cytochrome reductase transmembrane region; Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0008121|ubiquinol-cytochrome-c reductase activity||GO:0009055|electron carrier activity||GO:0051537|""2 iron, 2 sulfur cluster binding"""	NA
Ptp.2168.1.S1_at	A	A1TS	POPTR_0019s04930	POPTR_0019s04930 (11)	scaffold_19:5139434-5141436(-) (11)	NA	Q02921	Early nodulin-93	AT5G25940.1	early nodulin-related 	LOC_Os02g13380.1	"early nodulin 93 ENOD93 protein, putative, expressed"	Medtr1g008390.1	Early nodulin 93 ENOD93 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2169.1.S1_a_at	A	A1TS	POPTR_0010s03010	POPTR_0010s03010 (9)	scaffold_10:3519909-3519953(-) (9)	NA	O22506	"Glutamine synthetase, chloroplastic"	AT5G35630.3	glutamine synthetase 2 	LOC_Os04g56400.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr2g026390.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2169.1.S1_s_at	A	A1TS	POPTR_0010s03010	POPTR_0010s03010 (11)	scaffold_10:3519952-3520195(-) (11)	NA	O22506	"Glutamine synthetase, chloroplastic"	AT5G35630.3	glutamine synthetase 2 	LOC_Os04g56400.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr2g026390.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2169.2.S1_s_at	A	A2TS	POPTR_0008s20460	POPTR_0010s03010 (11)//POPTR_0008s20460 (11)	scaffold_10:3520199-3520244(-) (11)//scaffold_8:14204054-14204099(-) (11)	NA	P08281	"Glutamine synthetase leaf isozyme, chloroplastic"	AT5G35630.3	glutamine synthetase 2 	LOC_Os04g56400.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr2g026390.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2169.3.S1_at	A	A1TA	POPTR_0013s02220	POPTR_0013s02220 (11)	scaffold_13:1328871-1330373(-) (11)	NA	Q8LKS5	"Long chain acyl-CoA synthetase 7, peroxisomal"	AT5G27600.1	long-chain acyl-CoA synthetase 7 	LOC_Os12g04990.1	"acyl-CoA synthetase protein, putative, expressed"	Medtr1g132780.2	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2170.1.A1_at	A	A1TS	POPTR_0014s15660	POPTR_0014s15660 (9)	scaffold_14:11676562-11676696(+) (9)	NA	Q8VYE5	"Glucan endo-1,3-beta-glucosidase 12"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2171.1.S1_a_at	A	A1TS	POPTR_0008s05740	POPTR_0008s05740 (11)	scaffold_8:3332730-3333466(+) (11)	NA	Q9C7B1	Telomere repeat-binding protein 3	AT3G12560.1	TRF-like 9 	LOC_Os03g16700.4	"initiator-binding protein, putative, expressed"	Medtr5g087440.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2172.1.S1_at	A	A1TS	POPTR_0002s10870	POPTR_0002s10870 (11)	scaffold_2:7890765-7890887(+) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
Ptp.2172.2.S1_a_at	A	A1TS	POPTR_0002s10870	POPTR_0002s10870 (10)	scaffold_2:7890227-7890266(+) (10)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
Ptp.2172.2.S1_s_at	A	A1TS	POPTR_0002s10870	POPTR_0002s10870 (11)	scaffold_2:7890151-7890503(+) (11)	NA	P93111	"Glutamyl-tRNA reductase 1, chloroplastic"	AT1G58290.1	Glutamyl-tRNA reductase family protein 	LOC_Os10g35840.1	"shikimate/quinate 5-dehydrogenase, putative, expressed"	Medtr3g127660.1	Glutamyl-tRNA reductase; Shikimate/quinate 5-dehydrogenase; 	GO:0033014|tetrapyrrole biosynthetic process||GO:0055114|oxidation reduction	GO:0050661|NADP or NADPH binding||GO:0008883|glutamyl-tRNA reductase activity||GO:0004764|shikimate 5-dehydrogenase activity	GO:0005737|cytoplasm
Ptp.2173.2.S1_a_at	A	A1TS	POPTR_0010s15250	POPTR_0010s15250 (11)	scaffold_10:14573963-14574020(+) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT2G29360.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.2176.1.S1_at	A	A1TS	POPTR_0002s02220	POPTR_0002s02220 (11)	scaffold_2:1232676-1233048(-) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022060.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.2177.1.S1_at	A	A1TS	POPTR_0014s10200	POPTR_0014s10200 (11)	scaffold_14:7654553-7656619(+) (11)	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT2G46820.2	photosystem I P subunit 	LOC_Os07g28610.2	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2177.1.S1_x_at	A	A1TS	POPTR_0014s10200	POPTR_0014s10200 (11)	scaffold_14:7654171-7656619(+) (11)	NA	Q8LCA1	"Thylakoid membrane phosphoprotein 14 kDa, chloroplastic"	AT2G46820.2	photosystem I P subunit 	LOC_Os07g28610.2	expressed protein	Medtr7g146150.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2178.1.S1_at	A	A1TS	POPTR_0006s26650	POPTR_0006s26650 (11)	scaffold_6:24806696-24807243(-) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2178.1.S1_x_at	A	A1TS	POPTR_0006s26650	POPTR_0006s26650 (11)	scaffold_6:24806675-24807717(-) (11)	NA	Q8H156	GTP-binding nuclear protein Ran-3	AT5G55190.1	RAN GTPase 3 	LOC_Os01g42530.1	"ras-related protein, putative, expressed"	Medtr3g136500.1	"Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.218.1.A1_at	A	A1TS	POPTR_0006s06370	POPTR_0006s06370 (11)	scaffold_6:4549620-4550159(+) (11)	NA	Q5ZHV2	"N-alpha-acetyltransferase 35, NatC auxiliary subunit"	AT2G11000.1	MAK10 homologue 	LOC_Os02g55950.1	"ATMAK10, putative, expressed"	Medtr8g121510.1	"Protein MAK10 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2182.1.S1_at	A	A1TS	POPTR_0012s02260	POPTR_0012s02260 (10)	scaffold_12:1883597-1885360(-) (10)	NA	B6ISY6	ATP-dependent Clp protease ATP-binding subunit ClpX	AT5G53350.1	CLP protease regulatory subunit X 	LOC_Os02g35630.1	"AAA family ATPase, putative, expressed"	Medtr3g123850.1	"ClpX, ATPase regulatory subunit "	NA	GO:0005524|ATP binding	NA
Ptp.2183.1.S1_s_at	A	A1TS	POPTR_0010s02340	POPTR_0010s02340 (11)	scaffold_10:2691452-2692478(+) (11)	NA	Q68W88	50S ribosomal protein L14	AT5G46160.2	Ribosomal protein L14p/L23e family protein 	LOC_Os12g42180.1	"ribosomal protein, putative, expressed"	Medtr5g104080.1	"Ribosomal protein L14, bacterial and organelle form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2184.1.S1_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (11)	scaffold_14:13872970-13874117(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
Ptp.2184.2.S1_s_at	A	A1TS	POPTR_0014s17610	POPTR_0014s17610 (11)	scaffold_14:13874267-13874445(+) (11)	NA	O34524	Uncharacterized sodium-dependent transporter yocS	AT3G25410.1	Sodium Bile acid symporter family 	LOC_Os02g27490.2	"bile acid sodium symporter family protein, putative, expressed"	Medtr7g043470.1	Rhodopsin-like GPCR superfamily; Bile acid:sodium symporter 	GO:0006814|sodium ion transport	GO:0008508|bile acid:sodium symporter activity	GO:0016020|membrane
Ptp.2185.1.S1_s_at	A	A1TS	POPTR_0005s01470	POPTR_0005s01470 (11)	scaffold_5:958558-958876(-) (11)	NA	NA	NA	AT1G09310.1	"Protein of unknown function, DUF538 "	LOC_Os12g37650.1	"DUF538 domain containing protein, putative, expressed"	Medtr2g024690.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2186.1.S1_a_at	A	A1TS	POPTR_0018s11600	POPTR_0018s11600 (11)	scaffold_18:12264202-12264279(-) (11)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
Ptp.2186.2.S1_at	A	A1MS	POPTR_0018s11600	POPTR_0018s11600 (10)	scaffold_18:12264157-12264516(-) (10)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
Ptp.2186.3.S1_at	A	A1MS	POPTR_0018s11600	POPTR_0018s11600 (11)	scaffold_18:12265032-12265250(-) (11)	NA	Q944P7	"Leucine aminopeptidase 3, chloroplastic"	AT4G30920.1	Cytosol aminopeptidase family protein 	LOC_Os02g55140.1	"leucine aminopeptidase, chloroplast precursor, putative, expressed"	Medtr8g145340.1	"Peptidase M17, leucyl aminopeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004177|aminopeptidase activity	GO:0005622|intracellular
Ptp.2188.1.S1_a_at	A	A1TS	POPTR_0001s06150	POPTR_0001s06150 (11)	scaffold_1:4757584-4758142(-) (11)	NA	NA	NA	AT2G38800.1	Plant calmodulin-binding protein-related 	LOC_Os05g31690.1	expressed protein	Medtr3g021660.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2188.1.S1_s_at	A	A1TS	POPTR_0001s06150	POPTR_0001s06150 (11)	scaffold_1:4757648-4757885(-) (11)	NA	NA	NA	AT2G38800.1	Plant calmodulin-binding protein-related 	LOC_Os05g31690.1	expressed protein	Medtr3g021660.1	"Calmodulin-binding, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2189.1.A1_s_at	A	A1TS	POPTR_0001s10710	POPTR_0001s10710 (11)	scaffold_1:8335499-8336435(+) (11)	NA	Q39828	Dynamin-related protein 5A	AT5G42080.1	dynamin-like protein 	LOC_Os05g48240.1	"dynamin family protein, putative, expressed"	Medtr5g009190.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.219.1.A1_at	A	A1TS	POPTR_0005s06140	POPTR_0005s06140 (11)	scaffold_5:4045536-4046854(+) (11)	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.219.2.S1_s_at	A	A1TS	POPTR_0005s06140	POPTR_0005s06140 (11)	scaffold_5:4044081-4044569(+) (11)	NA	P48977	Alcohol dehydrogenase	AT1G77120.1	alcohol dehydrogenase 1 	LOC_Os11g10480.1	"dehydrogenase, putative, expressed"	Medtr3g125280.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2191.1.S1_at	A	A1TS	POPTR_0014s15780	POPTR_0014s15780 (9)	scaffold_14:11847345-11848985(+) (9)	NA	NA	NA	AT1G04985.1	unknown protein; Has 37 Blast hits to 37 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g57330.1	expressed protein	Medtr5g092340.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2193.1.A1_s_at	A	A2TS	POPTR_0005s24200	POPTR_0005s24200 (11)//POPTR_0005s24220 (9)	scaffold_5:22813564-22813793(+) (11)//scaffold_5:22837557-22837671(+) (9)	NA	O81117	Cytochrome P450 94A1	AT5G63450.1	"cytochrome P450, family 94, subfamily B, polypeptide 1 "	LOC_Os03g12260.1	"cytochrome P450 protein, putative, expressed"	Medtr7g105120.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2196.1.S1_at	A	A1TS	POPTR_0003s21940	POPTR_0003s21940 (10)	scaffold_3:19875603-19876061(+) (10)//scaffold_3:19925682-19926140(+) (10)	NA	Q39202	G-type lectin S-receptor-like serine/threonine-protein kinase RLK1	AT5G60900.1	receptor-like protein kinase 1 	LOC_Os04g12560.1	"receptor-like protein kinase, putative, expressed"	Medtr8g011780.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2197.1.A1_at	A	A2TS	POPTR_0010s01330	POPTR_0010s02110 (9)//POPTR_0010s01330 (9)	scaffold_10:1331536-1332435(+) (9)//scaffold_10:2429868-2430767(-) (9)	NA	P19515	Lipase	AT5G18640.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g30900.1	"lipase precursor, putative, expressed"	Medtr2g025130.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.2198.1.A1_at	A	A1TS	POPTR_0002s05670	POPTR_0002s05670 (11)	scaffold_2:3727362-3732648(-) (11)	NA	Q28D01	WD repeat-containing protein 26	AT5G08560.2	transducin family protein / WD-40 repeat family protein 	LOC_Os02g19210.1	"WD repeat-containing protein, putative, expressed"	Medtr5g097530.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2199.3.S1_at	A	A1MS	POPTR_0012s05260	POPTR_0012s05260 (11)	scaffold_12:4851177-4851732(+) (11)	NA	Q6YYA3	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT3G18390.1	CRS1 / YhbY (CRM) domain-containing protein 	LOC_Os05g47850.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr6g028390.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
Ptp.22.1.S1_s_at	A	A1TS	POPTR_0012s14720	POPTR_0012s14720 (11)	scaffold_12:14503805-14506898(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.22.2.S1_s_at	A	A1TS	POPTR_0012s14720	POPTR_0012s14720 (11)	scaffold_12:14507388-14507602(-) (11)	NA	NA	NA	AT5G62390.1	BCL-2-associated athanogene 7 	LOC_Os06g01500.3	"IQ calmodulin-binding motif family protein, putative, expressed"	NA	NA	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.220.1.A1_at	A	A1TS	POPTR_0006s11510	POPTR_0006s11510 (9)	scaffold_6:8720422-8720656(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2200.1.A1_at	A	A1TS	POPTR_0002s25170	POPTR_0002s25170 (11)	scaffold_2:22353846-22353951(+) (11)	NA	NA	NA	AT4G27990.1	YGGT family protein 	LOC_Os07g08770.1	"YGGT family protein, putative, expressed"	Medtr3g139240.1	hypothetical protein 	NA	NA	GO:0016020|membrane
Ptp.2200.1.A1_s_at	A	A1TS	POPTR_0002s25170	POPTR_0002s25170 (11)	scaffold_2:22353474-22353657(+) (11)	NA	NA	NA	AT4G27990.1	YGGT family protein 	LOC_Os07g08770.1	"YGGT family protein, putative, expressed"	Medtr3g139240.1	hypothetical protein 	NA	NA	GO:0016020|membrane
Ptp.2201.1.S1_at	A	A1TS	POPTR_0003s06770	POPTR_0003s06770 (11)	scaffold_3:8305672-8306353(+) (11)	NA	P05050	Alpha-ketoglutarate-dependent dioxygenase AlkB	AT3G14160.1	2-oxoglutarate-dependent dioxygenase family protein 	LOC_Os03g60190.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr4g031500.1	"Alpha-ketoglutarate-dependent dioxygenase alkB, related "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.2202.1.A1_at	A	A1TS	POPTR_0012s02560	POPTR_0012s02560 (9)	scaffold_12:2106402-2106884(+) (9)	NA	O95714	E3 ubiquitin-protein ligase HERC2	AT3G26100.2	Regulator of chromosome condensation (RCC1) family protein 	LOC_Os12g18650.4	"Regulator of chromosome condensation domain containing protein, expressed"	Medtr3g102750.1	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2203.1.S1_at	A	A1TS	POPTR_0002s03140	POPTR_0002s03140 (10)	scaffold_2:1946888-1946991(+) (10)	NA	Q43636	Thioredoxin H-type	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr5g021080.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2204.1.S1_at	A	A1TS	POPTR_0004s06580	POPTR_0004s06580 (10)	scaffold_4:5287597-5288515(-) (10)	NA	Q803H0	UPF0415 protein C7orf25 homolog	AT1G73380.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1308 (InterPro:IPR010733); Has 162 Blast hits to 160 proteins in 67 species: Archae - 0; Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). 	LOC_Os10g34810.1	expressed protein	Medtr6g083960.1	Protein of unknown function DUF1308 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2206.2.A1_a_at	A	A1TS	POPTR_0005s07360	POPTR_0005s07360 (11)	scaffold_5:5030734-5030936(+) (11)	NA	Q9NS86	LanC-like protein 2	AT5G65280.1	GCR2-like 1 	LOC_Os10g35480.1	"lanC-like protein 2, putative, expressed"	Medtr3g102050.1	Lanthionine synthetase C-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2207.1.S1_at	A	A1TS	POPTR_0005s21320	POPTR_0005s21320 (9)	scaffold_5:20430767-20432660(-) (9)	NA	P48504	Cytochrome b-c1 complex subunit 6	AT1G15120.1	Ubiquinol-cytochrome C reductase hinge protein 	LOC_Os11g06340.1	"ubiquinol-cytochrome C reductase hinge protein, putative, expressed"	Medtr2g008190.1	Ubiquinol-cytochrome C reductase hinge protein 	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
Ptp.2208.1.S1_s_at	A	A1TS	POPTR_0001s25620	POPTR_0001s25620 (11)	scaffold_1:24695227-24695637(+) (11)	NA	Q9FIM2	"ATP-dependent zinc metalloprotease FTSH 9, chloroplastic"	AT5G58870.1	FTSH protease 9 	LOC_Os02g43350.1	"OsFtsH7  FtsH protease, homologue of AtFtsH7, expressed"	Medtr5g078300.1	"AAA ATPase; Peptidase M41, FtsH "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0016887|ATPase activity||GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.221.2.A1_s_at	A	A1TS	POPTR_0017s13100	POPTR_0017s13100 (10)	scaffold_17:13268483-13269456(+) (10)	NA	Q54KZ8	Eukaryotic translation initiation factor 3 subunit M	AT5G15610.1	Proteasome component (PCI) domain protein 	LOC_Os04g01290.1	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2210.1.A1_s_at	A	A1TS	POPTR_0001s30010	POPTR_0001s30010 (11)	scaffold_1:28594637-28594967(+) (11)	NA	NA	NA	AT2G14680.3	myosin heavy chain-related 	LOC_Os03g31730.1	expressed protein	Medtr5g005400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2211.1.S1_at	A	A1TS	POPTR_0001s13630	POPTR_0001s13630 (9)	scaffold_1:10697461-10697836(+) (9)	NA	Q6YZE8	Squamosa promoter-binding-like protein 16	AT5G50570.2	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein 	LOC_Os08g41940.1	"OsSPL16 - SBP-box gene family member, expressed"	Medtr3g150760.1	SBP 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.2212.1.A1_at	A	A1TS	POPTR_0006s27840	POPTR_0006s27840 (11)	scaffold_6:25695611-25695912(-) (11)	NA	Q9SKZ2	Probable CCR4-associated factor 1 homolog 7	AT2G32070.1	"Polynucleotidyl transferase, ribonuclease H-like superfamily protein "	LOC_Os02g55300.1	"CAF1 family ribonuclease containing protein, putative, expressed"	Medtr3g138100.1	"Polynucleotidyl transferase, Ribonuclease H fold "	NA	NA	GO:0005634|nucleus
Ptp.2213.1.S1_at	A	A1TS	POPTR_0009s01900	POPTR_0009s01900 (10)	scaffold_9:2377972-2379100(+) (10)	NA	Q6MD85	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	AT5G60600.3	4-hydroxy-3-methylbut-2-enyl diphosphate synthase 	LOC_Os02g39160.1	"hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed"	Medtr2g110470.1	IspG protein; Dihydropteroate synthase-like 	GO:0055114|oxidation reduction||GO:0016114|terpenoid biosynthetic process	GO:0046429|4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	NA
Ptp.2215.1.S1_s_at	A	A1MS	POPTR_0018s09490	POPTR_0018s09490 (10)	scaffold_18:10376326-10376490(+) (11)	NA	Q9SP35	Mitochondrial import inner membrane translocase subunit Tim17	AT2G37410.2	translocase inner membrane subunit 17-2 	LOC_Os07g41330.1	"mitochondrial import inner membrane translocase subunit Tim17, putative, expressed"	NA	NA	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.2218.1.S1_s_at	A	A1TS	POPTR_0001s00430	POPTR_0001s00430 (11)	scaffold_1:329375-332732(-) (11)	NA	NA	NA	AT5G47570.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g40410.1	expressed protein	Medtr8g105980.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2219.1.S1_at	A	A1TS	POPTR_0004s03160	POPTR_0004s03160 (9)	scaffold_4:2129193-2129749(-) (11)	NA	Q41932	"Oxygen-evolving enhancer protein 3-2, chloroplastic"	AT4G05180.1	photosystem II subunit Q-2 	LOC_Os07g36080.1	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.2219.2.S1_a_at	A	A1TS	POPTR_0004s03160	POPTR_0004s03160 (11)	scaffold_4:2129817-2130548(-) (11)	NA	Q41932	"Oxygen-evolving enhancer protein 3-2, chloroplastic"	AT4G05180.1	photosystem II subunit Q-2 	LOC_Os07g36080.1	"oxygen evolving enhancer protein 3 domain containing protein, expressed"	Medtr2g096720.1	Photosystem II oxygen evolving complex protein PsbQ 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.222.2.A1_x_at	A	A1TS	POPTR_0017s06450	POPTR_0017s06450 (10)	scaffold_17:4942587-4942851(-) (10)	NA	P0CG84	Polyubiquitin (Fragment)	AT4G05320.6	polyubiquitin 10 	LOC_Os05g42424.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.2	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2221.1.A1_at	A	A1TS	POPTR_0003s07130	POPTR_0003s07130 (11)	scaffold_3:8719956-8720441(-) (11)	NA	Q9C8M9	Protein STRUBBELIG-RECEPTOR FAMILY 6	AT1G53730.1	STRUBBELIG-receptor family 6 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr8g027060.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2223.1.S1_at	A	A1TS	POPTR_0014s16030	POPTR_0014s16030 (10)	scaffold_14:12101714-12102195(+) (10)	NA	Q0I902	Threonyl-tRNA synthetase	AT2G04842.1	"threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative "	LOC_Os02g33500.1	"threonyl-tRNA synthetase, putative, expressed"	Medtr3g106090.1	"Threonyl-tRNA synthetase, class IIa; Aminoacyl-transfer RNA synthetase, class II "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.2225.2.S1_at	A	A1MS	POPTR_0002s05660	POPTR_0002s05660 (9)	scaffold_2:3725027-3725359(+) (9)	NA	Q9SLQ8	"Oxygen-evolving enhancer protein 2, chloroplastic"	AT1G06680.1	photosystem II subunit P-1 	LOC_Os07g04840.1	"PsbP, putative, expressed"	Medtr5g097510.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0015979|photosynthesis	GO:0005509|calcium ion binding	GO:0019898|extrinsic to membrane||GO:0009654|oxygen evolving complex
Ptp.2226.1.S1_at	A	A1TS	POPTR_0003s13460	POPTR_0003s13460 (9)	scaffold_3:13837773-13838014(-) (9)	NA	P13240	Disease resistance response protein 206	AT1G64160.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os07g44250.1	"dirigent, putative, expressed"	Medtr8g137520.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2227.1.A1_at	A	A1TS	POPTR_0010s12030	POPTR_0010s12030 (11)	scaffold_10:12139633-12139944(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2229.1.S1_at	A	A1TS	POPTR_0004s16110	POPTR_0004s16110 (11)	scaffold_4:16549359-16550910(-) (11)	NA	P93398	Guanine nucleotide-binding protein subunit beta-2	AT4G34460.1	GTP binding protein beta 1 	LOC_Os03g46650.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g159480.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2233.1.S1_at	A	A1TS	POPTR_0012s06890	POPTR_0012s06890 (10)	scaffold_12:7401488-7402024(-) (10)	NA	NA	NA	AT3G29270.2	RING/U-box superfamily protein 	LOC_Os03g31320.2	"RING zinc finger protein-like, putative, expressed"	Medtr6g013870.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2234.1.S1_s_at	A	A1TS	POPTR_0012s02170	POPTR_0012s02170 (11)	scaffold_12:1816191-1816656(+) (11)	NA	Q9M3B0	Probable pectinesterase/pectinesterase inhibitor 34	AT3G49220.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g13320.1	"pectinesterase, putative, expressed"	Medtr3g124040.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.2235.2.A1_a_at	A	A1TS	POPTR_0005s28110	POPTR_0005s28110 (11)	scaffold_5:25477953-25478658(-) (11)	NA	Q9SRE6	Calcium-binding protein CML38	AT1G76650.3	calmodulin-like 38 	LOC_Os01g72530.1	"OsCML31 - Calmodulin-related calcium sensor protein, expressed"	Medtr6g025320.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2236.1.A1_s_at	A	A1TS	POPTR_0006s04470	POPTR_0006s04470 (9)	scaffold_6:3050386-3051359(+) (11)	NA	Q96CS2	HAUS augmin-like complex subunit 1	AT2G41350.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21980.1); Has 188 Blast hits to 188 proteins in 66 species: Archae - 0; Bacteria - 12; Metazoa - 90; Fungi - 15; Plants - 54; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). 	LOC_Os08g14220.1	expressed protein	Medtr3g111390.1	"Helix-turn-helix, AraC type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2238.1.S1_at	A	A1TS	POPTR_0007s13040	POPTR_0007s13040 (11)	scaffold_7:13219986-13220120(-) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT2G18280.2	tubby like protein 2 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2238.1.S1_s_at	A	A1TS	POPTR_0007s13040	POPTR_0007s13040 (11)	scaffold_7:13219647-13219940(-) (11)	NA	Q6Z2G9	Tubby-like F-box protein 5	AT2G18280.2	tubby like protein 2 	LOC_Os02g47640.1	"OsFBT4 - F-box and tubby domain containing protein, expressed"	Medtr5g020460.1	Tubby; Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2239.1.S1_s_at	A	A1TS	POPTR_0001s14360	POPTR_0001s14360 (11)	scaffold_1:11285842-11286066(+) (11)	NA	Q8R1S0	Ubiquinone biosynthesis monooxygenase COQ6	AT3G24200.2	FAD/NAD(P)-binding oxidoreductase family protein 	LOC_Os03g62260.1	"FAD binding domain containing protein, expressed"	Medtr2g071190.2	Aromatic-ring hydroxylase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.224.1.A1_at	A	A1TS	POPTR_0018s06470	POPTR_0018s06470 (10)	scaffold_18:6377230-6379015(-) (10)	NA	Q9SR77	"Heme-binding-like protein At3g10130, chloroplastic"	AT5G20140.2	SOUL heme-binding family protein 	LOC_Os06g39690.1	"SOUL heme-binding protein, putative, expressed"	Medtr2g058890.1	SOUL heme-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2240.1.S1_at	A	A1TS	POPTR_0007s00930	POPTR_0007s00930 (9)	scaffold_7:494547-496645(-) (9)	NA	Q40532	Mitogen-activated protein kinase homolog NTF4	AT2G43790.1	MAP kinase 6 	LOC_Os06g06090.1	"CGMC_MAPKCMGC_2_ERK.12 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g128260.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2241.1.S1_at	A	A1TA	POPTR_0004s21930	POPTR_0004s21930 (11)	scaffold_4:20881823-20882211(-) (11)	NA	Q9SZL4	RING-H2 finger protein ATL18	AT4G38140.1	RING/U-box superfamily protein 	LOC_Os07g23970.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g010210.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2242.1.S1_a_at	A	A1TS	POPTR_0001s40700	POPTR_0001s40700 (11)	scaffold_1:40294473-40294718(+) (11)	NA	Q9ASV6	"30S ribosomal protein S20, chloroplastic"	AT3G15190.1	"chloroplast 30S ribosomal protein S20, putative "	LOC_Os01g48690.1	"ribosomal protein rpS20, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2244.1.A1_s_at	A	A1TS	POPTR_0007s04020	POPTR_0007s04020 (11)	scaffold_7:2405729-2406255(+) (11)	NA	Q9LXD9	Probable pectinesterase/pectinesterase inhibitor 51	AT5G09760.1	Plant invertase/pectin methylesterase inhibitor superfamily 	LOC_Os01g65790.1	"pectinesterase, putative, expressed"	Medtr4g142540.1	Pectinesterase; Pectinesterase inhibitor 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	GO:0005618|cell wall
Ptp.2245.2.A1_at	A	A1TS	POPTR_0001s41290	POPTR_0001s41290 (11)	scaffold_1:40906716-40906956(-) (11)	NA	Q99LH1	Nucleolar GTP-binding protein 2	AT1G52980.1	GTP-binding family protein 	LOC_Os03g22890.2	"GTPase of unknown function domain containing protein, putative, expressed"	Medtr4g111610.1	"Small GTP-binding protein domain; NGP1, N-terminal "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2246.1.A1_at	A	A1TS	POPTR_0002s18020	POPTR_0002s18020 (11)	scaffold_2:13911882-13913340(+) (11)	NA	Q1XDM0	Pyruvate dehydrogenase E1 component subunit alpha	AT1G01090.1	pyruvate dehydrogenase E1 alpha 	LOC_Os04g02900.1	"dehydrogenase E1 component domain containing protein, expressed"	Medtr8g074090.1	"Dehydrogenase, E1 component "	GO:0008152|metabolic process	"GO:0016624|""oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor"""	NA
Ptp.2248.1.S1_at	A	A1TS	POPTR_0005s26610	POPTR_0005s26610 (11)	scaffold_5:24555985-24556476(+) (11)	NA	Q0JIL1	Probable nucleoredoxin 2	AT1G60420.1	DC1 domain-containing protein 	LOC_Os01g58194.1	"protein disulfide isomerase, putative, expressed"	Medtr3g157120.1	"Protein kinase C, phorbol ester/diacylglycerol binding; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2251.1.S1_at	A	A1TS	POPTR_0009s10890	POPTR_0009s10890 (10)	scaffold_9:9218472-9218802(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2252.1.A1_at	A	A1TS	POPTR_0001s39210	POPTR_0001s39210 (11)	scaffold_1:38415990-38416519(+) (11)	NA	Q9SYM5	Probable rhamnose biosynthetic enzyme 1	AT1G78570.1	rhamnose biosynthesis 1 	LOC_Os03g17000.1	"NAD dependent epimerase/dehydratase family domain containing protein, expressed"	Medtr1g010610.1	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2253.1.S1_at	A	A1TS	POPTR_0003s11510	POPTR_0003s11510 (11)	scaffold_3:12282764-12283043(+) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.2254.1.S1_s_at	A	A1TS	POPTR_0005s24130	POPTR_0005s24130 (11)	scaffold_5:22768202-22768265(+) (11)	NA	P26569	Histone H1.2	AT2G30620.1	winged-helix DNA-binding transcription factor family protein 	LOC_Os03g58470.1	"retrotransposon protein, putative, Ty3-gypsy subclass, expressed"	Medtr5g021670.1	"Linker histone, N-terminal "	GO:0071103|DNA conformation change||GO:0006334|nucleosome assembly	GO:0003677|DNA binding	GO:0000786|nucleosome||GO:0005634|nucleus
Ptp.2255.1.S1_at	A	A1TS	POPTR_0015s08970	POPTR_0015s08970 (9)	scaffold_15:10316447-10317403(+) (9)	NA	NA	NA	AT5G63000.1	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	LOC_Os01g16510.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2256.1.S1_s_at	A	A1TS	POPTR_0001s23710	POPTR_0001s23710 (10)	scaffold_1:23097587-23098005(-) (11)	NA	Q9AUE0	Callose synthase 1	AT1G05570.1	callose synthase 1 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr3g061660.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.2257.1.S1_x_at	A	A1TS	POPTR_0009s03610	POPTR_0009s03610 (11)	scaffold_9:4235666-4236077(+) (11)	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
Ptp.2257.3.S1_x_at	A	A1TS	POPTR_0009s03610	POPTR_0009s03610 (11)	scaffold_9:4235666-4236174(+) (11)	NA	P43390	Metallothionein-like protein type 2	NA	NA	LOC_Os12g38270.1	"metallothionein, putative, expressed"	Medtr4g019490.1	"Plant metallothionein, family 15 "	NA	GO:0046872|metal ion binding	NA
Ptp.2258.1.S1_at	A	A1TS	POPTR_0001s30840	POPTR_0001s30840 (10)	scaffold_1:29281219-29281360(+) (10)	NA	NA	NA	AT4G34190.1	stress enhanced protein 1 	LOC_Os10g25570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2258.2.S1_at	A	A1MS	POPTR_0001s30840	POPTR_0001s30840 (9)	scaffold_1:29280197-29280737(+) (9)	NA	NA	NA	AT4G34190.1	stress enhanced protein 1 	LOC_Os10g25570.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2259.1.S1_at	A	A1TS	POPTR_0006s08580	POPTR_0006s08580 (10)	scaffold_6:6263048-6264646(-) (10)	NA	O13731	E3 ubiquitin-protein ligase ubr11	AT5G02310.1	proteolysis 6 	LOC_Os01g05500.2	"zinc finger protein, putative, expressed"	Medtr7g068520.1	"Zinc finger, RING-type; Zinc finger, N-recognin; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.226.1.S1_at	A	A1TS	POPTR_0014s05750	POPTR_0014s05750 (11)	scaffold_14:4303339-4304297(+) (11)	NA	P28769	T-complex protein 1 subunit alpha	AT3G20050.1	T-complex protein 1 alpha subunit 	LOC_Os04g46620.1	"T-complex protein, putative, expressed"	Medtr4g136760.1	"T-complex protein 1, alpha subunit "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.2260.1.S1_at	A	A1TS	POPTR_0017s06870	POPTR_0017s06870 (11)	scaffold_17:5229160-5229386(-) (11)	NA	O23372	Probable histone-lysine N-methyltransferase ATXR3	AT4G15180.1	SET domain protein 2 	LOC_Os08g08210.1	"SET domain containing protein, expressed"	Medtr2g103390.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2263.1.S1_s_at	A	A1TS	POPTR_0001s18210	POPTR_0001s18210 (11)	scaffold_1:15288290-15288453(+) (11)	NA	NA	NA	AT1G15270.1	Translation machinery associated TMA7 	LOC_Os06g47230.1	"coiled-coil domain-containing protein 72, putative, expressed"	Medtr4g009030.1	"Coiled-coil domain-containing protein 72 homolog, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2266.1.A1_s_at	A	A1TS	POPTR_0009s06200	POPTR_0009s06200 (11)	scaffold_9:6050945-6051120(+) (11)	NA	Q9LY66	"50S ribosomal protein L1, chloroplastic"	AT3G63490.1	Ribosomal protein L1p/L10e family 	LOC_Os05g32220.1	"L1P family of ribosomal proteins domain containing protein, expressed"	Medtr4g110000.1	Ribosomal protein L1 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0003723|RNA binding	NA
Ptp.2267.1.A1_at	A	A1TS	POPTR_0001s08770	POPTR_0001s08770 (11)	scaffold_1:6699306-6699506(-) (11)	NA	P46280	"Elongation factor Tu, chloroplastic"	AT4G20360.1	RAB GTPase homolog E1B 	LOC_Os02g38210.1	"elongation factor Tu, putative, expressed"	Medtr3g115100.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.2268.1.S1_s_at	A	A1TS	POPTR_0010s11970	POPTR_0010s11970 (10)	scaffold_10:12087366-12087720(-) (10)	NA	Q9ZSQ4	"Phosphoglucomutase, cytoplasmic"	AT1G70730.3	Phosphoglucomutase/phosphomannomutase family protein 	LOC_Os03g50480.1	"phosphoglucomutase, putative, expressed"	Medtr4g157910.1	Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; 	GO:0005975|carbohydrate metabolic process	"GO:0016868|""intramolecular transferase activity, phosphotransferases"""	NA
Ptp.2269.1.S1_s_at	A	A1TS	POPTR_0017s11410	POPTR_0017s11410 (11)	scaffold_17:11180527-11180850(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os09g19710.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g112900.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.227.1.A1_at	A	A1TS	POPTR_0002s08340	POPTR_0002s08340 (11)	scaffold_2:5818064-5818569(+) (11)	NA	Q94420	Protein maternal effect lethal 26	AT1G21780.2	BTB/POZ domain-containing protein 	LOC_Os08g01320.2	"C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed"	Medtr3g100540.1	BTB/POZ; ; 	NA	GO:0005515|protein binding	NA
Ptp.2270.1.A1_at	A	A1TS	POPTR_0003s11440	POPTR_0003s11440 (10)	scaffold_3:12245314-12245858(+) (10)	NA	Q5FVD6	Maspardin	AT4G12230.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g08840.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	Medtr8g106940.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2271.1.S1_s_at	A	A1TS	POPTR_0001s39510	POPTR_0001s39510 (11)	scaffold_1:38704033-38707849(-) (11)	NA	NA	NA	AT3G14830.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G53450.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g52920.1	expressed protein	Medtr2g091120.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2274.1.S1_s_at	A	A1TS	POPTR_0002s19780	POPTR_0002s19780 (10)	scaffold_2:15703009-15703659(+) (10)	NA	Q8LGG8	Universal stress protein A-like protein	AT3G62550.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g19820.4	"universal stress protein domain containing protein, putative, expressed"	Medtr1g106920.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.2275.2.S1_s_at	A	A1TS	POPTR_0010s19730	POPTR_0010s19730 (11)	scaffold_10:17567973-17570866(+) (11)	NA	P59234	Protein yippee-like	AT2G40110.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g093410.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2275.3.S1_at	A	A1TS	POPTR_0010s19730	POPTR_0010s19730 (11)	scaffold_10:17570935-17571085(+) (11)	NA	P59234	Protein yippee-like	AT2G40110.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g093410.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2278.1.A1_at	A	A1TS	POPTR_0006s14140	POPTR_0006s14140 (11)	scaffold_6:11450006-11450353(+) (11)	NA	NA	NA	AT5G20700.1	Protein of unknown function (DUF581) 	LOC_Os02g07820.1	"DUF581 domain containing protein, expressed"	Medtr8g132810.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.228.2.A1_s_at	A	A1TS	POPTR_0014s18740	POPTR_0014s18740 (10)	scaffold_14:16110061-16110316(-) (10)	NA	Q86UA1	Pre-mRNA-processing factor 39	AT1G04080.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os03g11200.1	"pre-mRNA-processing factor 39, putative, expressed"	Medtr7g116880.1	"RNA-processing protein, HAT helix "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2280.1.A1_s_at	A	A1TS	POPTR_0009s02050	POPTR_0009s02050 (11)	scaffold_9:2682169-2682387(+) (11)	NA	NA	NA	AT3G45600.1	tetraspanin3 	LOC_Os05g03140.1	"tetraspanin family protein, putative, expressed"	Medtr4g080350.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.2282.1.S1_a_at	A	A1TS	POPTR_0003s15370	POPTR_0003s15370 (11)	scaffold_3:15165268-15166325(-) (11)	NA	Q5VT66	"MOSC domain-containing protein 1, mitochondrial"	AT1G30910.1	Molybdenum cofactor sulfurase family protein 	LOC_Os09g38772.1	"MOSC domain-containing protein, mitochondrial precursor, putative, expressed"	Medtr4g090100.1	"MOSC; MOSC, N-terminal beta barrel; Pyruvate kinase, beta-barrel-like "	NA	GO:0003824|catalytic activity||GO:0030151|molybdenum ion binding||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2282.3.A1_at	A	A1TS	POPTR_0003s15370	POPTR_0003s15370 (11)	scaffold_3:15164849-15165000(-) (11)	NA	Q5VT66	"MOSC domain-containing protein 1, mitochondrial"	AT1G30910.1	Molybdenum cofactor sulfurase family protein 	LOC_Os09g38772.1	"MOSC domain-containing protein, mitochondrial precursor, putative, expressed"	Medtr4g090100.1	"MOSC; MOSC, N-terminal beta barrel; Pyruvate kinase, beta-barrel-like "	NA	GO:0003824|catalytic activity||GO:0030151|molybdenum ion binding||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2283.1.S1_at	A	A1TS	POPTR_0002s17770	POPTR_0002s17770 (10)	scaffold_2:13618632-13619104(-) (10)	NA	NA	NA	AT5G65960.1	GTP binding 	LOC_Os04g49530.1	expressed protein	Medtr8g087580.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2286.1.S1_at	A	A1TS	POPTR_0009s03310	POPTR_0009s03310 (10)	scaffold_9:3981259-3981643(+) (10)	NA	Q1S9I9	Probable histone H2B.1	AT3G45980.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.2288.1.A1_at	A	A1TS	POPTR_0004s05770	POPTR_0004s05770 (10)	scaffold_4:4533222-4533695(+) (10)	NA	Q39011	Shaggy-related protein kinase eta	AT4G18710.1	Protein kinase superfamily protein 	LOC_Os05g11730.1	"CGMC_GSK.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g097890.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2289.1.S1_at	A	A1TS	POPTR_0012s14600	POPTR_0012s14600 (11)	scaffold_12:14429224-14430357(-) (11)	NA	NA	NA	AT5G51510.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1352 (InterPro:IPR009787); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os10g36480.1	expressed protein	AC235753_11.1	hypothetical protein AC235753.1 68157-63742 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.229.1.A1_at	A	A1TS	POPTR_0018s12730	POPTR_0018s12730 (11)	scaffold_18:13241987-13242243(-) (11)	NA	NA	NA	AT5G32440.3	Ubiquitin system component Cue protein 	LOC_Os02g09180.1	"CUE domain containing protein, expressed"	Medtr4g005650.1	Ubiquitin system component Cue; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.229.1.A1_s_at	A	A1TS	POPTR_0018s12730	POPTR_0018s12730 (11)	scaffold_18:13241469-13241956(-) (11)	NA	NA	NA	AT5G32440.3	Ubiquitin system component Cue protein 	LOC_Os02g09180.1	"CUE domain containing protein, expressed"	Medtr4g005650.1	Ubiquitin system component Cue; UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2290.1.S1_at	A	A1TS	POPTR_0001s12630	POPTR_0001s12630 (11)	scaffold_1:9782888-9782955(-) (11)	NA	Q43291	60S ribosomal protein L21-1	AT1G09690.1	Translation protein SH3-like family protein 	LOC_Os03g04750.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2290.1.S1_s_at	A	A2TS	POPTR_0001s12630	POPTR_0003s15780 (11)//POPTR_0001s12630 (11)	scaffold_1:9782987-9783371(-) (10)//scaffold_3:15485862-15486264(-) (11)	NA	Q43291	60S ribosomal protein L21-1	AT1G09690.1	Translation protein SH3-like family protein 	LOC_Os03g04750.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2290.1.S1_x_at	A	A1TS	POPTR_0001s12630	POPTR_0001s12630 (11)	scaffold_1:9782888-9783439(-) (11)	NA	Q43291	60S ribosomal protein L21-1	AT1G09690.1	Translation protein SH3-like family protein 	LOC_Os03g04750.1	"60S ribosomal protein L21-2, putative, expressed"	AC235488_9.1	Ribosomal protein L21e AC235488.1 32835-31436 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2291.1.S1_a_at	A	A1TS	POPTR_0008s10710	POPTR_0008s10710 (11)	scaffold_8:6723152-6723262(-) (11)	NA	Q9M7X7	60S ribosomal protein L29-1	AT3G06700.3	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g137850.1	Ribosomal L29e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2291.2.S1_at	A	A1TA	POPTR_0018s14640	POPTR_0018s14640 (9)	scaffold_18:14779976-14780186(-) (9)	NA	Q6MAS9	Glycogen synthase	AT4G18240.1	starch synthase 4 	LOC_Os01g52250.4	"starch synthase, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0009058|biosynthetic process	NA	NA
Ptp.2291.3.S1_at	A	A1MS	POPTR_0008s10710	POPTR_0008s10710 (11)	scaffold_8:6723489-6723576(-) (11)	NA	Q9M7X7	60S ribosomal protein L29-1	AT3G06700.3	Ribosomal L29e protein family 	LOC_Os05g28750.1	"60S ribosomal protein L29-2, putative"	Medtr8g137850.1	Ribosomal L29e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2292.1.A1_at	A	A1TS	POPTR_0005s11290	POPTR_0005s11290 (11)	scaffold_5:8178005-8178339(-) (11)	NA	Q39435	Rac-like GTP-binding protein RHO1	AT2G17800.2	Arabidopsis RAC-like 1 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2292.1.A1_s_at	A	A2TS	POPTR_0005s11290	POPTR_0007s09170 (11)//POPTR_0005s11290 (11)	scaffold_5:8178125-8178579(-) (11)//scaffold_7:8384456-8384898(-) (11)	NA	Q39435	Rac-like GTP-binding protein RHO1	AT2G17800.2	Arabidopsis RAC-like 1 	LOC_Os02g58730.1	"ras-related protein, putative, expressed"	Medtr4g098540.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2295.1.A1_at	A	A1TS	POPTR_0001s06240	POPTR_0001s06240 (10)	scaffold_1:4815181-4815439(+) (10)	NA	NA	NA	AT3G54500.2	BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT5G64170.1); Has 162 Blast hits to 160 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 23; Fungi - 11; Plants - 118; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	LOC_Os01g31360.4	expressed protein	Medtr2g008800.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2296.1.A1_a_at	A	A1TS	POPTR_0016s05880	POPTR_0016s05880 (11)	scaffold_16:3820447-3820519(+) (11)	NA	Q6R567	E3 ubiquitin-protein ligase RMA1H1	AT3G58030.4	RING/U-box superfamily protein 	LOC_Os01g61420.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g112120.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2297.1.A1_at	A	A1TS	POPTR_0008s04590	POPTR_0008s04590 (11)	scaffold_8:2617221-2619000(+) (11)	NA	Q9ZUU1	"Probable adenylate kinase 1, chloroplastic"	AT2G37250.1	adenosine kinase 	LOC_Os03g03820.1	"adenylate kinase, putative, expressed"	Medtr7g120720.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.2298.1.A1_at	A	A1TS	POPTR_0016s10930	POPTR_0016s10930 (10)	scaffold_16:9327380-9327586(+) (10)	NA	Q3EBL9	Vacuolar protein-sorting-associated protein 37 homolog 2	AT2G36680.1	Modifier of rudimentary (Mod(r)) protein 	LOC_Os03g08770.1	"modifier of rudimentary protein, expressed"	Medtr7g124470.1	"Modifier of rudimentary, Modr "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2299.1.S1_at	A	A1TS	POPTR_0006s03960	POPTR_0006s03960 (9)	scaffold_6:2683841-2684805(-) (9)	NA	NA	NA	AT3G10250.2	Plant protein 1589 of unknown function 	LOC_Os02g04450.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.23.1.S1_at	A	A1TS	POPTR_0005s02340	POPTR_0005s02340 (11)	scaffold_5:1517954-1518577(-) (11)	NA	Q9ULC4	Malignant T cell-amplified sequence 1	AT1G09150.1	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein 	LOC_Os01g21180.1	"translation machinery-associated protein 20, putative, expressed"	Medtr3g123490.1	Uncharacterized domain 2 	NA	GO:0003723|RNA binding	NA
Ptp.23.2.S1_a_at	A	A2TS	POPTR_0005s02340	POPTR_0013s01530 (9)//POPTR_0005s02340 (9)	scaffold_13:867747-867868(-) (9)//scaffold_5:1520204-1520330(-) (9)	NA	Q9ULC4	Malignant T cell-amplified sequence 1	AT1G09150.1	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein 	LOC_Os01g21180.1	"translation machinery-associated protein 20, putative, expressed"	Medtr3g123490.1	Uncharacterized domain 2 	NA	GO:0003723|RNA binding	NA
Ptp.2300.1.A1_at	A	A1TS	POPTR_0018s06210	POPTR_0018s06210 (11)	scaffold_18:5938484-5938643(+) (11)	NA	P53383	Protein mrp homolog	AT3G24430.1	ATP binding 	LOC_Os01g52170.1	expressed protein	Medtr6g102220.1	Mrp 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
Ptp.2301.1.A1_at	A	A1TS	POPTR_0017s14470	POPTR_0017s14470 (11)	scaffold_17:14504760-14505247(-) (11)	NA	P21577	"6-phosphogluconate dehydrogenase, decarboxylating"	AT3G02360.1	6-phosphogluconate dehydrogenase family protein 	LOC_Os06g02144.2	"6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed"	AC146721_9.1	"6-phosphogluconate dehydrogenase, C-terminal AC146721.7 44310-43796 E EGN_Mt090430 200"	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0050661|NADP or NADPH binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity	NA
Ptp.2303.1.S1_at	A	A1TS	POPTR_0001s22160	POPTR_0001s22160 (11)	scaffold_1:20799298-20799574(-) (11)	NA	Q3T0E5	Adipocyte plasma membrane-associated protein	AT1G08470.1	strictosidine synthase-like 3 	LOC_Os03g53950.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
Ptp.2304.1.A1_s_at	A	A1TS	POPTR_0012s00600	POPTR_0012s00600 (11)	scaffold_12:298303-298741(+) (11)	NA	Q6LA42	Two-component response regulator-like APRR5	AT5G24470.1	pseudo-response regulator 5 	LOC_Os09g36220.2	"response regulator receiver domain containing protein, expressed"	Medtr3g122660.2	Response regulator receiver 	"GO:0023052|signaling||GO:0000160|two-component signal transduction system (phosphorelay)||GO:0034645|cellular macromolecule biosynthetic process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0000156|two-component response regulator activity	NA
Ptp.2307.1.S1_at	A	A1TS	POPTR_0010s01880	POPTR_0010s01880 (11)	scaffold_10:2062533-2064634(-) (11)	POPTR_0010s01870 (6)	NA	NA	AT3G06330.1	RING/U-box superfamily protein 	LOC_Os02g06920.2	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr2g025600.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2307.1.S1_s_at	A	A2TS	POPTR_0010s01870	POPTR_0010s01870 (11)//POPTR_0010s01880 (11)	scaffold_10:2045252-2046462(-) (11)//scaffold_10:2062810-2064022(-) (11)	POPTR_0008s20080 (6)	NA	NA	AT3G06330.1	RING/U-box superfamily protein 	LOC_Os02g06920.2	"zinc finger, C3HC4 type, domain containing protein, expressed"	Medtr2g025600.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2308.1.S1_s_at	A	A1TS	POPTR_0001s05560	POPTR_0001s05560 (11)	scaffold_1:4263838-4264120(-) (11)	NA	NA	NA	AT5G12950.1	Putative glycosyl hydrolase of unknown function (DUF1680) 	LOC_Os02g10190.1	"DUF1680 domain containing protein, putative, expressed"	Medtr4g086870.1	Protein of unknown function DUF1680 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.231.1.A1_s_at	A	A1TS	POPTR_0002s25480	POPTR_0002s25480 (11)	scaffold_2:22556600-22559763(+) (11)	NA	NA	NA	AT2G20230.1	Tetraspanin family protein 	LOC_Os06g51480.1	expressed protein	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.2310.1.A1_s_at	A	A1TS	POPTR_0001s14660	POPTR_0001s14660 (11)	scaffold_1:11505371-11505622(-) (10)//scaffold_1:11544526-11544781(-) (11)	NA	Q76CU2	Pleiotropic drug resistance protein 1	AT1G15520.1	pleiotropic drug resistance 12 	LOC_Os01g42380.1	"pleiotropic drug resistance protein, putative, expressed"	Medtr2g123540.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.2311.1.S1_at	A	A1TS	POPTR_0002s22600	POPTR_0002s22600 (10)	scaffold_2:19365688-19366246(-) (10)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.2313.1.A1_at	A	A1TS	POPTR_0002s12760	POPTR_0002s12760 (11)	scaffold_2:9501765-9504276(+) (11)	NA	Q6PBN4	"Coenzyme Q-binding protein COQ10 homolog, mitochondrial"	AT4G17650.1	Polyketide cyclase / dehydrase and lipid transport protein 	LOC_Os01g56560.1	"cyclase/dehydrase family protein, expressed"	Medtr3g147740.1	"aromatic-rich family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2316.1.S1_at	A	A1TS	POPTR_0002s18610	POPTR_0002s18610 (11)	scaffold_2:14490580-14491879(+) (11)	NA	P34791	"Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic"	AT3G62030.3	rotamase CYP 4 	LOC_Os01g18210.1	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr7g134340.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.2318.1.S1_at	A	A1TS	POPTR_0019s09020	POPTR_0019s09020 (11)	scaffold_19:10610071-10610551(-) (11)	NA	NA	NA	AT2G40800.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56430.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). 	LOC_Os01g07382.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2320.1.S1_a_at	A	A1TS	POPTR_0001s16730	POPTR_0001s16730 (11)	scaffold_1:13513781-13514030(-) (11)	NA	Q9SYG7	Aldehyde dehydrogenase family 7 member B4	AT1G54100.2	aldehyde dehydrogenase 7B4 	LOC_Os09g26880.1	"aldehyde dehydrogenase, putative, expressed"	Medtr2g049500.1	Aldehyde dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.2322.1.A1_at	A	A1TS	POPTR_0003s21080	POPTR_0003s21080 (11)	scaffold_3:19378802-19378953(+) (11)	NA	P28752	Tubulin alpha-1 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2322.1.A1_x_at	A	A1TS	POPTR_0003s21080	POPTR_0003s21080 (11)	scaffold_3:19378760-19378953(+) (11)	NA	P28752	Tubulin alpha-1 chain	AT5G19780.1	tubulin alpha-5 	LOC_Os07g38730.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g134370.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2323.3.A1_at	A	A1TA	POPTR_0014s06790	POPTR_0014s06790 (9)	scaffold_14:5123706-5126639(-) (10)	POPTR_0014s06820 (6)	Q50EK3	Cytochrome P450 704C1	AT2G45510.1	"cytochrome P450, family 704, subfamily A, polypeptide 2 "	LOC_Os10g38110.1	"cytochrome P450, putative, expressed"	AC233070_7.1	Cytochrome P450 AC233070.4 33530-28470 E EGN_Mt090430 200	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2324.1.A1_s_at	A	A1TS	POPTR_0007s13060	POPTR_0007s13060 (11)	scaffold_7:13243339-13244134(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G66530.2	Galactose mutarotase-like superfamily protein 	LOC_Os09g15820.1	"aldose 1-epimerase, putative, expressed"	Medtr5g020530.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.2327.1.A1_at	A	A1TS	POPTR_0013s00760	POPTR_0013s00760 (11)	scaffold_13:391566-391954(-) (11)	NA	Q9SA52	"Uncharacterized protein At1g09340, chloroplastic"	AT1G09340.1	chloroplast RNA binding 	LOC_Os12g23180.1	"3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed"	Medtr1g086420.2	NAD-dependent epimerase/dehydratase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2329.1.S1_s_at	A	A1TS	POPTR_0009s15590	POPTR_0009s15590 (11)	scaffold_9:12026348-12026648(+) (11)	NA	Q23892	Lysosomal beta glucosidase	AT5G20950.2	Glycosyl hydrolase family protein 	LOC_Os03g53800.5	"periplasmic beta-glucosidase precursor, putative, expressed"	Medtr3g110840.1	"Glycoside hydrolase, family 3, N-terminal; Glycoside hydrolase, family 3, C-terminal "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.233.1.A1_a_at	A	A1TS	POPTR_0008s18280	POPTR_0008s18280 (10)	scaffold_8:12238079-12238189(-) (10)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.233.1.A1_at	A	A1MS	POPTR_0008s18280	POPTR_0008s18280 (11)	scaffold_8:12237804-12238058(-) (11)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.233.2.A1_at	A	A1TS	POPTR_0008s18280	POPTR_0008s18280 (10)	scaffold_8:12235807-12236000(-) (10)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.2330.1.S1_at	A	A1TS	POPTR_0001s21550	POPTR_0001s21550 (11)	scaffold_1:20054954-20055242(-) (11)	NA	NA	NA	AT1G15200.1	protein-protein interaction regulator family protein 	LOC_Os03g49520.1	"pinin/SDK/memA protein, putative, expressed"	Medtr2g007930.1	"Pinin/SDK/memA protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2332.2.A1_a_at	A	A1TS	POPTR_0008s19320	POPTR_0008s19320 (11)	scaffold_8:13273356-13275442(-) (11)	NA	Q91V92	ATP-citrate synthase	AT1G60810.1	ATP-citrate lyase A-2 	LOC_Os11g47330.1	"ATP-grasp domain containing protein, expressed"	Medtr5g035230.1	"ATP-grasp fold, succinyl-CoA synthetase-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2334.1.A1_at	A	A2TS	POPTR_0006s05470	POPTR_0006s05470 (11)//POPTR_0831s00200 (10)	scaffold_6:3869831-3870263(-) (11)//scaffold_831:5736-6167(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2335.1.A1_at	A	A1TS	POPTR_0010s06770	POPTR_0010s06770 (11)	scaffold_10:8038211-8038631(-) (11)	NA	Q5AS82	GDP-mannose transporter 1	AT1G76340.1	golgi nucleotide sugar transporter 3 	LOC_Os03g11590.1	"integral membrane protein, putative, expressed"	Medtr1g126830.1	"Integral membrane protein, putative "	NA	NA	GO:0016020|membrane
Ptp.2337.1.S1_at	A	A1TS	POPTR_0004s04930	POPTR_0004s04930 (11)	scaffold_4:3698396-3698897(-) (11)	NA	P38460	Uncharacterized mitochondrial protein ymf17	AT5G02050.1	Mitochondrial glycoprotein family protein 	NA	NA	Medtr5g088110.1	Mitochondrial glycoprotein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2338.1.S1_s_at	A	A1TS	POPTR_0011s11350	POPTR_0011s11350 (11)	scaffold_11:14075548-14075651(+) (11)	NA	Q9LKA5	"Uncharacterized protein At3g15000, mitochondrial"	AT3G15000.1	cobalt ion binding 	LOC_Os09g33480.1	"DAG protein, chloroplast precursor, putative, expressed"	Medtr1g090070.1	"DAG protein, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2339.1.S1_at	A	A1TS	POPTR_0015s13910	POPTR_0015s13910 (11)	scaffold_15:13674955-13675302(-) (11)	NA	NA	NA	AT5G52060.1	BCL-2-associated athanogene 1 	LOC_Os09g35630.1	"BAG domain-containing protein, putative, expressed"	Medtr1g129370.1	"Ubiquitin; Apoptosis regulator Bcl-2 protein, BAG "	GO:0006915|apoptosis	GO:0005515|protein binding	NA
Ptp.234.1.A1_at	A	A1TS	POPTR_0003s05990	POPTR_0003s05990 (11)	scaffold_3:7354270-7355123(+) (11)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.5	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.234.1.A1_s_at	A	A2TS	POPTR_0001s17280	POPTR_0003s05990 (11)//POPTR_0001s17280 (11)	scaffold_1:14100340-14100724(-) (11)//scaffold_3:7354733-7355102(+) (11)	NA	NA	NA	AT3G15680.1	Ran BP2/NZF zinc finger-like superfamily protein 	LOC_Os02g10920.2	"zinc finger family protein, putative, expressed"	Medtr3g136630.1	"Zinc finger, RanBP2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.2340.1.S1_at	A	A1TS	POPTR_0004s09020	POPTR_0004s09020 (11)	scaffold_4:7581787-7582253(+) (11)	NA	A0JMW6	Transmembrane protein 214-A	AT1G23170.2	"Protein of unknown function DUF2359, transmembrane "	LOC_Os01g03760.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2341.1.S1_at	A	A1TS	POPTR_0019s10490	POPTR_0019s10490 (11)	scaffold_19:12051099-12051475(+) (11)	NA	NA	NA	AT1G33800.1	Protein of unknown function (DUF579) 	LOC_Os12g10320.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr3g013170.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2342.1.A1_s_at	A	A1TS	POPTR_0018s08370	POPTR_0018s08370 (11)	scaffold_18:9311256-9311290(-) (11)	NA	Q86UW6	NEDD4-binding protein 2	AT2G26280.1	CTC-interacting domain 7 	LOC_Os06g09890.4	"smr domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2343.1.S1_at	A	A1TS	POPTR_0001s00660	POPTR_0001s00660 (11)	scaffold_1:563594-565013(+) (11)	NA	NA	NA	AT5G51400.1	PLAC8 family protein 	LOC_Os03g01210.1	"uncharacterized Cys-rich domain containing protein, putative, expressed"	Medtr7g041040.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2344.1.A1_at	A	A1TS	POPTR_0005s21750	POPTR_0005s21750 (11)	scaffold_5:20854775-20855022(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2344.1.A1_x_at	A	A1TS	POPTR_0005s21750	POPTR_0005s21750 (11)	scaffold_5:20854775-20855186(+) (11)	NA	Q96520	Peroxidase 12	AT1G71695.1	Peroxidase superfamily protein 	LOC_Os01g73220.1	"peroxidase precursor, putative, expressed"	AC234842_18.1	"Haem peroxidase, plant/fungal/bacterial AC234842.1 74419-72794 F EGN_Mt090430 200"	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2345.1.S1_at	A	A2TS	POPTR_0008s02000	POPTR_0008s02000 (11)//POPTR_0341s00210 (11)	scaffold_341:9382-9769(+) (11)//scaffold_8:956407-956759(+) (11)	NA	Q9ZVJ2	Uncharacterized protein At2g38710	AT2G38710.2	AMMECR1 family 	LOC_Os10g42250.2	expressed protein	AC233577_42.3	AMMECR1 AC233577.5 194590-187676 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2347.1.A1_at	A	A1TS	POPTR_0004s21400	POPTR_0004s21400 (11)	scaffold_4:20546497-20547742(+) (11)	POPTR_0009s16660 (7)	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.1	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2347.1.A1_x_at	A	A1TS	POPTR_0004s21400	POPTR_0004s21400 (11)	scaffold_4:20546497-20547760(+) (11)	POPTR_0009s16660 (7)	P25076	"Cytochrome c1-1, heme protein, mitochondrial"	AT5G40810.1	Cytochrome C1 family 	LOC_Os05g23620.3	"cytochrome c1-1, heme protein, mitochondrial precursor, putative, expressed"	Medtr6g025150.1	"Cytochrome c, monohaem "	NA	GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.2348.2.S1_s_at	A	A1TS	POPTR_0016s12720	POPTR_0016s12720 (10)	scaffold_16:12098581-12099133(+) (10)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.235.1.S1_s_at	A	A1TS	POPTR_0006s00650	POPTR_0006s00650 (11)	scaffold_6:341175-341531(-) (11)	NA	Q8LFN9	Probable ADP-ribosylation factor GTPase-activating protein AGD13	AT5G47710.2	Calcium-dependent lipid-binding (CaLB domain) family protein 	LOC_Os09g07800.1	expressed protein	Medtr2g032750.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2351.1.S1_at	A	A1TS	POPTR_0018s13940	POPTR_0018s13940 (10)	scaffold_18:14215597-14215729(-) (10)	NA	NA	NA	AT4G30010.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os02g07910.2	"fiber protein Fb15, putative, expressed"	Medtr2g042700.1	"fiber protein Fb15, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2354.1.S1_s_at	A	A1TS	POPTR_0010s25300	POPTR_0010s25300 (11)	scaffold_10:21036189-21039064(-) (11)	NA	Q54NC1	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr3g111130.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2358.1.S1_at	A	A1TS	POPTR_0012s05410	POPTR_0012s05410 (11)	scaffold_12:5050550-5051766(-) (11)	NA	Q9C9C4	"Enolase 1, chloroplastic"	AT1G74030.1	enolase 1 	LOC_Os09g20820.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.2359.2.S1_a_at	A	A1TS	POPTR_0006s05000	POPTR_0006s05000 (11)	scaffold_6:3481602-3483642(-) (11)	NA	O22944	Protein N-terminal glutamine amidohydrolase	AT2G41760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function WDYHV (InterPro:IPR019161); Has 201 Blast hits to 201 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os05g32190.1	"tungus CG8253-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2359.2.S1_s_at	A	A1TS	POPTR_0006s05000	POPTR_0006s05000 (11)	scaffold_6:3482250-3484149(-) (11)	NA	O22944	Protein N-terminal glutamine amidohydrolase	AT2G41760.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function WDYHV (InterPro:IPR019161); Has 201 Blast hits to 201 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). 	LOC_Os05g32190.1	"tungus CG8253-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.236.1.S1_s_at	A	A1TS	POPTR_0014s14420	POPTR_0014s14420 (11)	scaffold_14:10575514-10575588(+) (11)	NA	Q9C5Z2	Eukaryotic translation initiation factor 3 subunit H	AT1G10840.1	translation initiation factor 3 subunit H1 	LOC_Os04g30780.1	"eukaryotic translation initiation factor 3 subunit H, putative, expressed"	Medtr7g021910.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2360.1.S1_at	A	A1TS	POPTR_0019s09740	POPTR_0019s09740 (11)	scaffold_19:11336853-11336955(-) (11)	NA	Q9C9H5	Endoglucanase 9	AT1G71380.1	cellulase 3 	LOC_Os04g36610.1	"endoglucanase, putative"	Medtr3g016610.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2360.1.S1_s_at	A	A1TS	POPTR_0019s09740	POPTR_0019s09740 (11)	scaffold_19:11337034-11337416(-) (11)	NA	Q9C9H5	Endoglucanase 9	AT1G71380.1	cellulase 3 	LOC_Os04g36610.1	"endoglucanase, putative"	Medtr3g016610.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2361.1.S1_at	A	A1TS	POPTR_0008s18260	POPTR_0008s18260 (11)	scaffold_8:12224832-12225415(-) (11)	NA	O04450	T-complex protein 1 subunit epsilon	AT1G24510.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os06g36700.1	"T-complex protein, putative, expressed"	Medtr3g102720.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.2363.1.S1_s_at	A	A1TS	POPTR_0006s11620	POPTR_0006s11620 (10)	scaffold_6:8828262-8828530(+) (10)	NA	Q08047	"1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic"	AT5G03650.1	starch branching enzyme 2.2 	LOC_Os02g32660.1	"1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed"	Medtr7g126840.1	"Alpha amylase, C-terminal all-beta; "	GO:0005975|carbohydrate metabolic process	GO:0043169|cation binding||GO:0003824|catalytic activity	NA
Ptp.2364.1.S1_at	A	A1TS	POPTR_0011s05990	POPTR_0011s05990 (10)	scaffold_11:6013732-6014639(-) (10)	NA	Q6Z7L8	Rac-like GTP-binding protein 7	AT5G45970.1	RAC-like 2 	LOC_Os02g20850.1	"ras-related protein, putative, expressed"	Medtr2g132410.1	Ras GTPase 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2365.1.S1_at	A	A1MS	POPTR_0009s01640	POPTR_0009s01640 (11)	scaffold_9:2175533-2175813(+) (11)	NA	NA	NA	AT2G28320.1	Pleckstrin homology (PH) and lipid-binding START domains-containing protein 	LOC_Os10g33930.1	"DUF1336 domain containing protein, expressed"	Medtr2g110100.1	Lipid-binding START; Pleckstrin homology-type 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2368.1.S1_s_at	A	A1TS	POPTR_0002s21340	POPTR_0002s21340 (10)	scaffold_2:17780043-17781259(+) (10)	NA	P40782	Cyprosin (Fragment)	AT1G11910.1	aspartic proteinase A1 	LOC_Os05g49200.2	"aspartic proteinase oryzasin-1 precursor, putative, expressed"	Medtr8g147120.1	"Actin-binding, actinin-type; Saposin B subdomain "	GO:0006629|lipid metabolic process||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004190|aspartic-type endopeptidase activity	NA
Ptp.2369.1.S1_s_at	A	A1TS	POPTR_0001s17940	POPTR_0001s17940 (11)	scaffold_1:14875823-14876155(-) (11)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.1	"coatomer subunit beta, putative, expressed"	AC234703_19.3	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.2369.2.S1_at	A	A1TS	POPTR_0001s17940	POPTR_0001s17940 (11)	scaffold_1:14874748-14875014(-) (11)	NA	Q9C827	Coatomer subunit beta'-2	AT1G52360.1	"Coatomer, beta' subunit "	LOC_Os06g05180.1	"coatomer subunit beta, putative, expressed"	AC234703_19.3	Coatomer WD associated region AC234703.1 105994-116865 E EGN_Mt090430 200	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.237.1.S2_s_at	A	A1TS	POPTR_0004s23490	POPTR_0004s23490 (11)	scaffold_4:22204163-22204561(-) (11)	NA	Q6YW46	Elongation factor 1-gamma 2	AT1G09640.1	"Translation elongation factor EF1B, gamma chain "	LOC_Os06g37440.1	"elongation factor 1-gamma, putative, expressed"	Medtr2g005400.1	"Elongation factor 1, gamma chain; Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.2370.1.A1_at	A	A1TS	POPTR_0008s10480	POPTR_0008s10480 (11)	scaffold_8:6566388-6566440(-) (11)	NA	Q54YA0	Probable ATP-citrate synthase	AT3G06650.1	ATP-citrate lyase B-1 	LOC_Os01g19450.1	"ATP-citrate synthase subunit 1, putative, expressed"	Medtr2g038160.1	ATP-citrate lyase/succinyl-CoA ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2371.1.A1_at	A	A1TS	POPTR_0011s12760	POPTR_0011s12760 (10)	scaffold_11:15446194-15446677(-) (10)	NA	Q8L6Y1	Ubiquitin carboxyl-terminal hydrolase 14	AT3G20630.1	ubiquitin-specific protease 14 	LOC_Os01g08200.1	"ubiquitin carboxyl-terminal hydrolase 14, putative, expressed"	Medtr2g095540.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; UBA-like "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity||GO:0008270|zinc ion binding	NA
Ptp.2373.1.A1_at	A	A1TS	POPTR_0001s16030	POPTR_0001s16030 (10)	scaffold_1:12846575-12847001(-) (10)	NA	Q9SX31	Proline-rich receptor-like protein kinase PERK9	AT1G52310.1	protein kinase family protein / C-type lectin domain-containing protein 	LOC_Os01g01410.1	"TKL_IRAK_C-LEC.1 - TKL_IRAK_C-LEC has homology to C-type lectin receptors, expressed"	Medtr2g126640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2374.1.S1_at	A	A1TS	POPTR_0015s08190	POPTR_0015s08190 (9)	scaffold_15:9447273-9447556(-) (9)	NA	Q9S795	"Betaine aldehyde dehydrogenase 1, chloroplastic"	AT1G74920.1	aldehyde dehydrogenase 10A8 	LOC_Os04g39020.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125020.1	"Betaine aldehyde dehydrogenase 1, chloroplast precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.2375.1.A1_at	A	A1TS	POPTR_0014s17230	POPTR_0014s17230 (11)	scaffold_14:13366572-13367543(-) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2379.2.S1_a_at	A	A1TS	POPTR_0012s08010	POPTR_0012s08010 (11)	scaffold_12:9021363-9021956(+) (11)	NA	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.238.1.A1_at	A	A1TS	POPTR_0018s13570	POPTR_0018s13570 (9)	scaffold_18:13851534-13852242(-) (9)	NA	P27450	"Probable serine/threonine-protein kinase Cx32, chloroplastic"	AT2G17220.1	Protein kinase superfamily protein 	LOC_Os02g02600.1	"serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed"	Medtr8g088050.1	Tyrosine protein kinase; High mobility group box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2380.1.A1_s_at	A	A1TS	POPTR_0001s30020	POPTR_0001s30020 (11)	scaffold_1:28595468-28595736(-) (11)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.2381.1.S1_at	A	A1TS	POPTR_0016s10420	POPTR_0016s10420 (11)	scaffold_16:8650941-8651425(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr4g018920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2382.2.A1_a_at	A	A1TS	POPTR_0005s23140	POPTR_0005s23140 (11)	scaffold_5:21958073-21958117(+) (11)	NA	Q75HV0	Cyclin-P3-1	AT3G63120.1	cyclin p1;1 	LOC_Os05g33040.3	"cyclin, putative, expressed"	Medtr7g092670.1	Cyclin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2383.1.S1_at	A	A1MS	POPTR_0012s05490	POPTR_0012s05490 (9)	scaffold_12:5156556-5156782(-) (9)	NA	Q7ZXX2	Kinesin-like protein KIF19	AT1G18550.1	ATP binding microtubule motor family protein 	LOC_Os01g42070.1	"kinesin motor domain containing protein, putative, expressed"	Medtr8g115780.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.2386.1.A1_at	A	A1TS	POPTR_0014s03590	POPTR_0014s03590 (11)	scaffold_14:2867644-2868177(-) (11)	NA	Q9SX97	Dof zinc finger protein DOF1.6	AT1G47655.1	Dof-type zinc finger DNA-binding family protein 	LOC_Os02g47810.1	"dof zinc finger domain containing protein, putative, expressed"	Medtr4g023580.1	"Zinc finger, Dof-type "	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.2388.1.A1_s_at	A	A1TS	POPTR_0001s03860	POPTR_0001s03860 (11)	scaffold_1:3110395-3111444(-) (11)	NA	NA	NA	AT4G26410.1	Uncharacterised conserved protein UCP022280 	LOC_Os03g20860.1	expressed protein	Medtr4g115230.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2390.2.A1_a_at	A	A1TS	POPTR_0003s05520	POPTR_0003s05520 (10)	scaffold_3:6822028-6822093(-) (10)	NA	NA	NA	AT1G80000.2	CASC3/Barentsz eIF4AIII binding 	LOC_Os01g41190.2	"glycine-rich protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2391.2.S1_at	A	A1TA	POPTR_0004s22020	POPTR_0004s22020 (10)	scaffold_4:20967332-20967878(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2392.1.A1_at	A	A1TS	POPTR_0003s20170	POPTR_0003s20170 (10)	scaffold_3:18744736-18745080(+) (10)	NA	NA	NA	AT3G08550.1	elongation defective 1 protein / ELD1 protein 	LOC_Os01g13200.1	"abscisic acid insensitive 8, putative, expressed"	Medtr3g026170.1	"ABI8/ELD1/KOB1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2393.1.S1_at	A	A1TS	POPTR_0014s10670	POPTR_0014s10670 (11)	scaffold_14:7946044-7946829(+) (11)	NA	Q8K2Y7	"39S ribosomal protein L47, mitochondrial"	AT1G07830.1	ribosomal protein L29 family protein 	LOC_Os06g03790.1	"39S ribosomal protein L47, mitochondrial precursor, putative, expressed"	Medtr5g015940.1	Ribosomal protein L29; Alpha-helical ferredoxin; Mitochondrial 39-S ribosomal L47 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005761|mitochondrial ribosome
Ptp.2393.1.S1_s_at	A	A1TS	POPTR_0014s10670	POPTR_0014s10670 (11)	scaffold_14:7946907-7947156(+) (11)	NA	Q8K2Y7	"39S ribosomal protein L47, mitochondrial"	AT1G07830.1	ribosomal protein L29 family protein 	LOC_Os06g03790.1	"39S ribosomal protein L47, mitochondrial precursor, putative, expressed"	Medtr5g015940.1	Ribosomal protein L29; Alpha-helical ferredoxin; Mitochondrial 39-S ribosomal L47 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005761|mitochondrial ribosome
Ptp.2394.1.S1_a_at	A	A1TS	POPTR_0006s09380	POPTR_0006s09380 (10)	scaffold_6:6891635-6892505(-) (10)	NA	NA	NA	AT3G53990.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g63010.1	"universal stress protein domain containing protein, putative, expressed"	Medtr7g071220.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.2396.1.A1_at	A	A1TS	POPTR_0003s09590	POPTR_0003s09590 (10)	scaffold_3:10885140-10885210(-) (10)	NA	Q38908	Probable xyloglucan endotransglucosylase/hydrolase protein 30	AT1G32170.1	xyloglucan endotransglucosylase/hydrolase 30 	LOC_Os02g03550.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr5g029020.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2396.1.A1_s_at	A	A1TS	POPTR_0003s09590	POPTR_0003s09590 (11)	scaffold_3:10885311-10885618(-) (11)	NA	Q38908	Probable xyloglucan endotransglucosylase/hydrolase protein 30	AT1G32170.1	xyloglucan endotransglucosylase/hydrolase 30 	LOC_Os02g03550.1	"glycosyl hydrolases family 16, putative, expressed"	Medtr5g029020.1	"Glycoside hydrolase, family 16; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2397.1.A1_at	A	A1TS	POPTR_0006s07190	POPTR_0006s07190 (10)	scaffold_6:5169778-5170290(+) (10)	NA	Q9VQP9	Putative oligosaccharyltransferase complex subunit CG9662	AT4G29870.1	Oligosaccharyltransferase complex/magnesium transporter family protein 	LOC_Os02g21080.1	"AGAP008475-PA, putative, expressed"	Medtr2g043130.1	"UPF0527 membrane protein B, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2398.1.S1_s_at	A	A1TS	POPTR_0007s06770	POPTR_0007s06770 (10)	scaffold_7:5137484-5137517(+) (10)	NA	Q9SJ12	"Probable ATP synthase 24 kDa subunit, mitochondrial"	AT2G21870.1	copper ion binding;cobalt ion binding;zinc ion binding 	LOC_Os02g03860.1	"mitochondrial ATP synthase precursor, putative, expressed"	Medtr4g141050.1	"Probable ATP synthase 24 kDa subunit, mitochondrial precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2399.1.S1_s_at	A	A1TS	POPTR_0004s17810	POPTR_0004s17810 (11)	scaffold_4:17845135-17845375(+) (11)	NA	Q9FYB5	"Chaperone protein dnaJ 11, chloroplastic"	AT2G17880.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os08g43490.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g022110.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.24.1.S1_s_at	A	A1TS	POPTR_0017s13710	POPTR_0017s13710 (11)	scaffold_17:13791182-13793996(+) (11)	NA	NA	NA	AT5G64130.1	cAMP-regulated phosphoprotein 19-related protein 	LOC_Os05g49160.2	expressed protein	Medtr2g077020.1	Lg106-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2400.1.S1_at	A	A1TS	POPTR_0008s08910	POPTR_0008s08910 (9)	scaffold_8:5499013-5499655(+) (10)//scaffold_8:5523526-5524167(+) (9)	NA	Q8H1U5	Anaphase-promoting complex subunit 2	AT2G04660.1	anaphase-promoting complex/cyclosome 2 	LOC_Os04g40830.1	"cullin family domain containing protein, putative, expressed"	Medtr4g111940.1	Cullin; N-6 Adenine-specific DNA methylase 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.2402.1.S1_s_at	A	A1TS	POPTR_0006s26400	POPTR_0006s26400 (11)	scaffold_6:24615817-24617806(-) (11)	NA	Q54CV3	Coiled-coil domain-containing protein 93 homolog	AT4G32560.2	paramyosin-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2403.1.S1_s_at	A	A1TS	POPTR_0001s15290	POPTR_0001s15290 (11)	scaffold_1:12117405-12117508(-) (11)	NA	NA	NA	AT4G17520.1	Hyaluronan / mRNA binding family 	LOC_Os01g52390.1	"plasminogen activator inhibitor 1 RNA-binding protein, putative, expressed"	Medtr7g093220.1	Hyaluronan/mRNA binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2404.1.S1_at	A	A1TS	POPTR_0005s18480	POPTR_0005s18480 (10)	scaffold_5:16719412-16719707(+) (10)	NA	NA	NA	AT5G67210.1	Protein of unknown function (DUF579) 	LOC_Os06g47310.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr4g130370.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2406.2.S1_a_at	A	A1TS	POPTR_0003s21070	POPTR_0003s21070 (11)	scaffold_3:19366088-19366956(-) (11)	NA	P0C582	Putative mitochondrial 2-oxoglutarate/malate carrier protein	AT5G19760.1	Mitochondrial substrate carrier family protein 	LOC_Os05g11780.1	"mitochondrial carrier protein, putative, expressed"	Medtr4g134510.1	Mitochondrial substrate carrier 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2408.1.A1_at	A	A1TS	POPTR_0002s12150	POPTR_0002s12150 (11)	scaffold_2:9011340-9011806(-) (11)	POPTR_1058s00200 (6)	O74913	Uncharacterized protein C757.02c	AT4G24220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g32170.1	"NAD dependent epimerase/dehydratase family protein, putative, expressed"	AC235748_15.1	hypothetical protein AC235748.1 51987-49940 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2409.1.S1_at	A	A1TS	POPTR_0013s07550	POPTR_0013s07550 (11)	scaffold_13:6382959-6383454(+) (11)	NA	NA	NA	AT5G16680.1	RING/FYVE/PHD zinc finger superfamily protein 	LOC_Os12g24540.1	"PHD-finger family protein, expressed"	Medtr5g007340.1	"Zinc finger, FYVE/PHD-type; "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2412.1.A1_s_at	A	A1TS	POPTR_0014s12060	POPTR_0014s12060 (11)	scaffold_14:8928174-8928459(+) (11)	NA	O81635	Kinesin-4	AT2G47500.1	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain 	LOC_Os03g18980.1	"kinesin motor domain containing protein, expressed"	Medtr1g107720.1	"Calponin-like actin-binding; Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.2414.1.S1_at	A	A1TS	POPTR_0004s16220	POPTR_0004s16220 (11)	scaffold_4:16627671-16628855(-) (11)	NA	NA	NA	AT4G39300.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	Medtr4g095570.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2415.1.A1_s_at	A	A1TS	POPTR_0002s03810	POPTR_0002s03810 (11)	scaffold_2:2365642-2365778(-) (11)	NA	Q940J9	Probable methyltransferase PMT8	AT1G04430.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os10g33720.3	"methyltransferase, putative, expressed"	Medtr1g043160.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.2416.2.S1_s_at	A	A1TS	POPTR_0001s29670	POPTR_0001s29670 (11)	scaffold_1:28311245-28311421(-) (11)	NA	P33629	Tubulin alpha chain	AT4G14960.2	Tubulin/FtsZ family protein 	LOC_Os11g14220.1	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr3g127910.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2419.1.S1_at	A	A1TS	POPTR_0006s28360	POPTR_0006s28360 (11)	scaffold_6:26062394-26062596(-) (11)	NA	Q96361	ADP-ribosylation factor 1	AT2G24765.1	ADP-ribosylation factor 3 	LOC_Os08g15040.1	"ADP-ribosylation factor, putative, expressed"	Medtr8g128220.1	ARF/SAR superfamily 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2420.1.S1_at	A	A1TS	POPTR_0002s09625	POPTR_0002s09625 (9)	scaffold_2:6897912-6898445(-) (9)	NA	Q9LP24	Probable leucine-rich repeat receptor-like protein kinase At1g35710	AT1G35710.1	Protein kinase family protein with leucine-rich repeat domain 	LOC_Os05g07740.1	"receptor-like protein kinase 2 precursor, putative, expressed"	Medtr1g019670.1	Tyrosine protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.2421.2.S1_a_at	A	A1TS	POPTR_0012s09190	POPTR_0012s09190 (10)	scaffold_12:10252832-10253151(+) (10)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os01g68060.1	"copine, putative, expressed"	Medtr6g022780.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2425.1.S1_at	A	A1TS	POPTR_0008s06460	POPTR_0008s06460 (11)	scaffold_8:3829016-3829538(-) (11)	NA	O04197	Coronatine-insensitive protein 1	AT2G39940.1	RNI-like superfamily protein 	LOC_Os05g37690.1	"OsFBL23 - F-box domain and LRR containing protein, expressed"	Medtr5g089200.1	Leucine-rich repeat 2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2427.1.A1_at	A	A1MS	POPTR_0008s20030	POPTR_0008s20030 (11)	scaffold_8:13830556-13830693(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2427.1.A1_s_at	A	A1TS	POPTR_0008s20030	POPTR_0008s20030 (11)	scaffold_8:13830746-13831047(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr2g025450.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2428.1.S1_at	A	A1TS	POPTR_0011s14970	POPTR_0011s14970 (11)	scaffold_11:17180685-17181458(-) (11)	NA	O81635	Kinesin-4	AT5G65930.2	kinesin-like calmodulin-binding protein (ZWICHEL) 	LOC_Os04g57140.2	"kinesin motor domain containing protein, putative, expressed"	Medtr5g025080.1	"Band 4.1; Unconventional myosin/plant kinesin-like protein/non-motor protein conserved region MyTH4; Kinesin, motor region; Prismane-like "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	GO:0005856|cytoskeleton
Ptp.243.1.A1_at	A	A1TS	POPTR_0006s11140	POPTR_0006s11140 (10)	scaffold_6:8455933-8456241(+) (10)	NA	Q9XG77	Proteasome subunit alpha type-6	AT2G05840.1	20S proteasome subunit PAA2 	LOC_Os03g08280.2	"peptidase, T1 family, putative, expressed"	Medtr2g071490.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.2430.1.A1_at	A	A1TS	POPTR_0008s01200	POPTR_0008s01200 (11)	scaffold_8:579270-579744(+) (11)	NA	O24606	Protein ETHYLENE INSENSITIVE 3	AT3G20770.1	Ethylene insensitive 3 family protein 	LOC_Os03g20790.1	"ethylene-insensitive 3, putative"	Medtr5g094880.1	Ethylene insensitive 3 	NA	GO:0030528|transcription regulator activity	GO:0005634|nucleus
Ptp.2431.1.A1_at	A	A1TS	POPTR_0014s11570	POPTR_0014s11570 (11)	scaffold_14:8570774-8570959(-) (11)	NA	Q8VZF3	"Probable glutamyl endopeptidase, chloroplastic"	AT2G47390.1	Prolyl oligopeptidase family protein 	LOC_Os03g19410.1	"OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g132980.1	"Peptidase S9, prolyl oligopeptidase active site region "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	NA
Ptp.2432.1.S1_a_at	A	A1TS	POPTR_0015s01150	POPTR_0015s01150 (11)	scaffold_15:707768-708744(+) (11)	NA	Q9T096	Protein yippee-like At4g27745	AT4G27745.1	Yippee family putative zinc-binding protein 	LOC_Os12g29960.1	"yippee zinc-binding protein, putative"	Medtr3g123570.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2433.1.S1_s_at	A	A1TS	POPTR_0006s02150	POPTR_0006s02150 (11)	scaffold_6:1403167-1403542(-) (11)	NA	Q9LIE5	Protein FAR-RED ELONGATED HYPOCOTYL 3	AT3G22170.2	far-red elongated hypocotyls 3 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.2434.1.S1_x_at	A	A1TS	POPTR_0009s02370	POPTR_0009s02370 (11)	scaffold_9:3120534-3121054(+) (11)	NA	Q84WM9	Elongation factor 1-beta 1	AT5G12110.1	"Glutathione S-transferase, C-terminal-like;Translation elongation  factor EF1B/ribosomal protein S6 "	LOC_Os07g46750.1	"elongation factor protein, putative, expressed"	Medtr5g095760.1	"Elongation factor 1, beta/beta/delta chain; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006414|translational elongation	GO:0003746|translation elongation factor activity	GO:0005853|eukaryotic translation elongation factor 1 complex
Ptp.2437.1.S1_at	A	A1TS	POPTR_0008s11980	POPTR_0008s11980 (11)	scaffold_8:7717224-7718295(-) (11)	NA	NA	NA	AT1G13380.1	Protein of unknown function (DUF1218) 	LOC_Os09g10910.3	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2438.1.A1_at	A	A2TS	POPTR_0010s22580	POPTR_0010s22610 (11)//POPTR_0010s22580 (11)	scaffold_10:19442002-19442324(-) (11)//scaffold_10:19453805-19454121(+) (11)	NA	NA	NA	AT2G35790.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1301 (InterPro:IPR009724); Has 116 Blast hits to 116 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 6; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). 	LOC_Os03g63680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2439.1.S1_at	A	A1TS	POPTR_0004s16950	POPTR_0004s16950 (9)	scaffold_4:17324372-17324917(-) (9)	NA	Q9SYM2	Probable salt tolerance-like protein At1g78600	AT4G38960.1	B-box type zinc finger family protein 	LOC_Os09g35880.1	"B-box zinc finger family protein, putative, expressed"	Medtr5g021510.1	"Zinc finger, B-box "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.2440.1.S1_x_at	A	A1TS	POPTR_0001s18730	POPTR_0001s18730 (11)	scaffold_1:15868245-15868976(+) (11)	NA	Q41951	Aquaporin TIP2-1	AT3G16240.1	delta tonoplast integral protein 	LOC_Os06g22960.1	"aquaporin protein, putative, expressed"	Medtr8g015170.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2440.2.A1_s_at	A	A1TS	POPTR_0018s14020	POPTR_0018s14020 (11)	scaffold_18:14280750-14281110(+) (11)	NA	O65351	Subtilisin-like protease	AT4G30020.1	PA-domain containing subtilase family protein 	LOC_Os06g48650.2	"OsSub52 - Putative Subtilisin homologue, expressed"	Medtr2g042580.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	GO:0005618|cell wall||GO:0016020|membrane
Ptp.2441.1.S1_x_at	A	A1TS	POPTR_0017s05770	POPTR_0017s05770 (11)	scaffold_17:4498742-4500543(-) (11)	NA	Q42896	Fructokinase-2	AT3G59480.1	pfkB-like carbohydrate kinase family protein 	LOC_Os01g66940.1	"kinase, pfkB family, putative, expressed"	Medtr2g118370.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2442.1.S1_s_at	A	A1TS	POPTR_0001s21520	POPTR_0001s21520 (11)	scaffold_1:20009425-20009897(-) (11)	NA	P43255	COP9 signalosome complex subunit 8	AT4G14110.1	"COP9 signalosome, subunit CSN8 "	LOC_Os04g34930.1	"COP9 signalosome complex subunit 8, putative, expressed"	Medtr2g007990.1	"Intron maturase, type II; RNA-directed DNA polymerase (Reverse transcriptase) "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2443.1.A1_at	A	A1TS	POPTR_0004s01310	POPTR_0004s01310 (9)	scaffold_4:711953-712340(+) (9)	NA	NA	NA	AT5G07900.1	Mitochondrial transcription termination factor family protein 	LOC_Os07g24090.1	"mTERF domain containing protein, expressed"	Medtr2g024980.1	Mitochodrial transcription termination factor-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2445.1.S1_at	A	A1TS	POPTR_0004s18730	POPTR_0004s18730 (11)	scaffold_4:18507698-18508355(-) (11)	NA	Q00624	L-ascorbate oxidase homolog	AT1G76160.1	SKU5 similar 5 	LOC_Os06g46500.1	"monocopper oxidase, putative, expressed"	Medtr2g104340.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2446.1.S1_s_at	A	A1TS	POPTR_0004s03230	POPTR_0004s03230 (11)	scaffold_4:2174372-2174667(-) (11)	NA	NA	NA	AT4G05150.1	Octicosapeptide/Phox/Bem1p family protein 	LOC_Os07g37040.1	"PB1 domain containing protein, expressed"	Medtr4g124660.1	Octicosapeptide/Phox/Bem1p 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2448.1.S1_at	A	A1TS	POPTR_0002s24410	POPTR_0002s24410 (11)	scaffold_2:21786902-21788541(+) (11)	NA	Q9SVR0	60S ribosomal protein L13a-3	AT4G13170.1	Ribosomal protein L13 family protein 	LOC_Os03g54890.1	"ribosomal protein L13, putative, expressed"	Medtr5g091220.1	"Ribosomal protein L13, archea and eukaryotic form "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2450.1.S1_at	A	A1TS	POPTR_0004s17030	POPTR_0004s17030 (11)	scaffold_4:17404317-17404640(-) (11)	NA	P59227	V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5	AT4G34720.1	"ATPase, F0/V0 complex, subunit C protein "	LOC_Os02g34510.1	"vacuolar ATP synthase, putative, expressed"	Medtr4g097470.1	"Vacuolar H+-transporting two-sector ATPase, C subunit "	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	GO:0015078|hydrogen ion transmembrane transporter activity	"GO:0033177|""proton-transporting two-sector ATPase complex, proton-transporting domain"""
Ptp.2453.1.S1_at	A	A1TS	POPTR_0015s13500	POPTR_0015s13500 (10)	scaffold_15:13419530-13419709(-) (10)	NA	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os10g35870.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.2456.2.S1_a_at	A	A1TS	POPTR_0007s14910	POPTR_0007s14910 (11)	scaffold_7:14600677-14602231(-) (11)	NA	Q66XS7	"NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial"	AT5G67590.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os07g39710.1	"NADH dehydrogenase iron-sulfur protein 4, mitochondrial precursor, putative, expressed"	Medtr8g101670.1	ETC complex I subunit conserved region 	GO:0022900|electron transport chain	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH"""	GO:0005743|mitochondrial inner membrane
Ptp.2457.1.S1_s_at	A	A1TS	POPTR_0013s00550	POPTR_0013s00550 (11)	scaffold_13:260407-260822(-) (11)	NA	A9PDZ7	S-adenosylmethionine synthase 2	AT3G17390.1	S-adenosylmethionine synthetase family protein 	LOC_Os05g04510.2	"S-adenosylmethionine synthetase, putative, expressed"	Medtr7g133710.1	S-adenosylmethionine synthetase 	GO:0006730|one-carbon metabolic process||GO:0044281|small molecule metabolic process	GO:0004478|methionine adenosyltransferase activity||GO:0005524|ATP binding	NA
Ptp.2461.1.S1_at	A	A1TS	POPTR_0006s08670	POPTR_0006s08670 (11)	scaffold_6:6352120-6352735(+) (11)	NA	Q9LZM1	Oxysterol-binding protein-related protein 3A	AT5G02100.1	Oxysterol-binding family protein 	LOC_Os03g16690.1	"oxysterol-binding protein, putative, expressed"	Medtr4g083830.1	Oxysterol-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2462.1.S1_at	A	A1TS	POPTR_0014s08500	POPTR_0014s08500 (10)	scaffold_14:6311614-6311880(-) (10)	NA	O04603	"50S ribosomal protein L5, chloroplastic"	AT4G01310.1	Ribosomal L5P family protein 	LOC_Os03g03360.1	"ribosomal protein L5, putative, expressed"	Medtr7g088500.1	Ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2463.1.S1_a_at	A	A1TS	POPTR_0013s03890	POPTR_0013s03890 (11)	scaffold_13:2551697-2551736(+) (11)//scaffold_876:4951-4984(-) (9)	NA	P02877	Pro-hevein	AT3G04720.1	pathogenesis-related 4 	LOC_Os11g37950.1	"WIP3 - Wound-induced protein precursor, expressed"	Medtr6g027840.1	"Glycoside hydrolase, family 19; Barwin-related endoglucanase "	GO:0050832|defense response to fungus||GO:0042742|defense response to bacterium	GO:0008061|chitin binding	NA
Ptp.2463.1.S1_s_at	A	A1TS	POPTR_0013s03890	POPTR_0013s03890 (11)	scaffold_13:2551182-2551571(+) (11)	NA	P02877	Pro-hevein	AT3G04720.1	pathogenesis-related 4 	LOC_Os11g37950.1	"WIP3 - Wound-induced protein precursor, expressed"	Medtr6g027840.1	"Glycoside hydrolase, family 19; Barwin-related endoglucanase "	GO:0050832|defense response to fungus||GO:0042742|defense response to bacterium	GO:0008061|chitin binding	NA
Ptp.2464.1.A1_s_at	A	A1TS	POPTR_0007s06050	POPTR_0007s06050 (9)	scaffold_7:4197507-4199212(+) (9)	NA	Q9M5M6	60S ribosomal protein L30	AT1G77940.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2467.1.A1_at	A	A1TS	POPTR_0019s14590	POPTR_0019s14590 (11)	scaffold_19:15331318-15331591(+) (11)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2467.1.A1_x_at	A	A1TS	POPTR_0019s14590	POPTR_0019s14590 (11)	scaffold_19:15331259-15331591(+) (11)	NA	Q8LDW9	Xyloglucan endotransglucosylase/hydrolase protein 9	AT4G03210.1	xyloglucan endotransglucosylase/hydrolase 9 	LOC_Os04g53950.2	"glycosyl hydrolases family 16 protein, protein, expressed"	Medtr2g103330.1	"Glycoside hydrolase, family 16; DNA topoisomerase II; Xyloglucan endo-transglycosylase, C-terminal "	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.2472.1.A1_s_at	A	A1TS	POPTR_0001s44450	POPTR_0001s44450 (11)	scaffold_1:44870688-44871101(+) (11)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.2	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.2473.1.A1_s_at	A	A1TS	POPTR_0005s21870	POPTR_0005s21870 (11)	scaffold_5:20921060-20921116(-) (11)	NA	Q9SQI2	Protein GIGANTEA	AT1G22770.1	gigantea protein (GI) 	LOC_Os01g08700.6	"GIGANTEA, putative, expressed"	Medtr1g124650.2	"Protein GIGANTEA, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2474.1.S1_at	A	A1MS	POPTR_0010s12350	POPTR_0010s12350 (10)	scaffold_10:12378181-12378493(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2475.2.A1_a_at	A	A1TS	POPTR_0010s10300	POPTR_0010s10300 (11)	scaffold_10:10836352-10836615(-) (11)	NA	P00693	Alpha-amylase type A isozyme	AT1G69830.1	alpha-amylase-like 3 	LOC_Os01g51754.1	"alpha-amylase precursor, putative, expressed"	Medtr1g024370.1	"Alpha amylase, catalytic subdomain; Alpha-amylase beta-sheet, C-terminal; "	GO:0005975|carbohydrate metabolic process	GO:0004556|alpha-amylase activity||GO:0005509|calcium ion binding	NA
Ptp.2477.1.S1_s_at	A	A1TS	POPTR_0001s00410	POPTR_0001s00410 (11)	scaffold_1:310871-311055(+) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT4G12510.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g46810.1	"LTPL120 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106200.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2478.1.S1_at	A	A1TS	POPTR_0001s36780	POPTR_0001s36780 (11)	scaffold_1:35496174-35496720(+) (11)	NA	Q924N4	Solute carrier family 12 member 6	AT1G30450.2	cation-chloride co-transporter 1 	LOC_Os08g23440.1	"amino acid permease family protein, putative, expressed"	Medtr2g055760.1	Interleukin-6/G-CSF/MGF; Amino acid permease-associated region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.248.1.A1_s_at	A	A1TS	POPTR_0004s05630	POPTR_0004s05630 (11)	scaffold_4:4394257-4394780(+) (11)	NA	Q54WA3	Peroxisomal targeting signal 2 receptor	AT1G29260.1	peroxin 7 	LOC_Os02g14790.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g165720.1	"WD-40 repeat-containing protein MSI1, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2480.1.S1_at	A	A1TS	POPTR_0006s04560	POPTR_0006s04560 (11)	scaffold_6:3109404-3110422(+) (11)	NA	Q8LAS8	S-formylglutathione hydrolase	AT2G41530.1	S-formylglutathione hydrolase 	LOC_Os01g71300.1	"S-formylglutathione hydrolase, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2481.1.A1_s_at	A	A1TS	POPTR_0010s02450	POPTR_0010s02450 (11)	scaffold_10:2833549-2833961(-) (11)	NA	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.2483.1.A1_at	A	A1TS	POPTR_0003s03720	POPTR_0003s03720 (11)	scaffold_3:4400109-4400905(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19410.1	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2483.1.A1_s_at	A	A1TS	POPTR_0003s03720	POPTR_0003s03720 (11)	scaffold_3:4400099-4400635(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19410.1	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2487.1.S1_s_at	A	A1TS	POPTR_0013s13090	POPTR_0013s13090 (11)	scaffold_13:13674582-13675128(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT3G59690.1	IQ-domain 13 	LOC_Os01g67090.1	"IQ calmodulin-binding motif domain containing protein, expressed"	Medtr4g128420.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2488.1.S1_at	A	A1TS	POPTR_0001s10290	POPTR_0001s10290 (11)	scaffold_1:7979925-7979997(+) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2488.1.S1_x_at	A	A1TS	POPTR_0001s10290	POPTR_0001s10290 (11)	scaffold_1:7977089-7979997(+) (11)	NA	P35135	Ubiquitin-conjugating enzyme E2-17 kDa	AT1G64230.2	ubiquitin-conjugating enzyme 28 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2489.1.A1_at	A	A1TS	POPTR_0003s20690	POPTR_0003s20690 (11)	scaffold_3:19162856-19163406(-) (11)	NA	Q9SKZ1	Transcription factor Pur-alpha 1	AT2G32080.2	purin-rich alpha 1 	LOC_Os01g15600.1	"PUR ALPHA-1, putative, expressed"	Medtr4g115250.1	"PUR-alpha/beta/gamma, DNA/RNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.249.1.S1_at	A	A1TS	POPTR_0019s04230	POPTR_0019s04230 (11)	scaffold_19:4337083-4337705(+) (11)	NA	Q9M8Y0	Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC	AT3G04240.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g68680.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g093110.1	"Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2490.1.S1_at	A	A1TS	POPTR_0005s00810	POPTR_0005s00810 (9)	scaffold_5:370336-370953(-) (9)	NA	O80522	GDSL esterase/lipase At1g09390	AT1G09390.1	GDSL-like Lipase/Acylhydrolase superfamily protein 	LOC_Os01g22780.2	"GDSL-like lipase/acylhydrolase, putative, expressed"	AC235094_3.1	"Lipolytic enzyme, G-D-S-L AC235094.1 17941-22012 E EGN_Mt090430 200"	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.2491.1.S1_at	A	A1TS	POPTR_0008s13620	POPTR_0008s13620 (9)	scaffold_8:8967460-8967682(+) (9)	NA	Q9S7U5	Heat stress transcription factor A-8	AT1G67970.1	heat shock transcription factor  A8 	LOC_Os03g63750.1	"HSF-type DNA-binding domain containing protein, expressed"	Medtr4g156700.1	"Heat shock factor (HSF)-type, DNA-binding; Winged helix repressor DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2492.1.S1_s_at	A	A1TS	POPTR_0007s09870	POPTR_0007s09870 (10)	scaffold_7:9392254-9392685(-) (10)	NA	Q9FJX6	Formin-like protein 6	AT5G67470.1	formin homolog 6 	LOC_Os01g67240.1	"formin-like protein 1 precursor, putative, expressed"	Medtr5g015760.1	Actin-binding FH2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2493.1.A1_at	A	A1TS	POPTR_0015s01570	POPTR_0015s01570 (10)	scaffold_15:990814-991308(+) (10)	NA	Q8BVG4	Dipeptidyl peptidase 9	AT5G24260.1	prolyl oligopeptidase family protein 	LOC_Os02g18850.1	"OsPOP5 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr3g124020.2	"Peptidase S9, prolyl oligopeptidase active site region; Peptidase S9B, dipeptidylpeptidase IV N-terminal "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008236|serine-type peptidase activity	GO:0016020|membrane
Ptp.2494.1.S1_at	A	A1TS	POPTR_0003s06220	POPTR_0003s06220 (10)	scaffold_3:7698108-7698970(-) (10)	NA	P55039	Developmentally-regulated GTP-binding protein 2	AT1G72660.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g28940.1	"GTP-binding protein, putative, expressed"	Medtr3g144800.1	TGS; Small GTP-binding protein domain 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2495.1.S1_at	A	A1TS	POPTR_0016s14250	POPTR_0016s14250 (10)	scaffold_16:13503455-13503896(+) (10)	POPTR_0006s10840 (6)	NA	NA	AT1G29690.1	MAC/Perforin domain-containing protein 	LOC_Os01g54510.1	"MAC/Perforin domain containing protein, putative, expressed"	Medtr4g036780.1	Membrane attack complex component/perforin/complement C9 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2497.1.S1_s_at	A	A2TS	POPTR_0017s02690	POPTR_0017s02690 (11)//POPTR_0293s00210 (10)	scaffold_17:1924777-1924988(-) (11)//scaffold_293:12491-12702(-) (10)	NA	Q9CXS4	Centromere protein V	AT5G16940.2	carbon-sulfur lyases 	LOC_Os09g23370.2	"proline-rich protein 6, putative, expressed"	Medtr3g087280.1	"Glutathione-dependent formaldehyde-activating, GFA "	GO:0008152|metabolic process	GO:0016846|carbon-sulfur lyase activity	NA
Ptp.2498.1.A1_s_at	A	A1TS	POPTR_0006s04570	POPTR_0006s04570 (11)	scaffold_6:3111270-3111555(-) (11)	NA	Q8RXS6	DNA helicase INO80 complex homolog 1	AT3G57300.1	INO80 ortholog 	LOC_Os03g22900.1	"SNF2 family N-terminal domain containing protein, expressed"	Medtr7g108170.1	"SNF2-related; Helicase, C-terminal; "	NA	GO:0003677|DNA binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.25.1.S1_at	A	A1TS	POPTR_0004s07040	POPTR_0004s07040 (11)	scaffold_4:5853202-5855019(-) (11)	NA	Q9FLX7	"Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial"	AT5G52840.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os03g19890.1	"NADH dehydrogenase 1 alpha subcomplex subunit 5, putative, expressed"	NA	NA	GO:0022904|respiratory electron transport chain	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH"""	GO:0005743|mitochondrial inner membrane
Ptp.2503.1.S1_at	A	A1TS	POPTR_0001s09330	POPTR_0001s09330 (11)	scaffold_1:7122642-7123179(-) (11)	NA	P18025	Tubulin beta-1 chain	AT5G12250.1	beta-6 tubulin 	LOC_Os01g59150.2	"tubulin/FtsZ domain containing protein, putative, expressed"	Medtr4g149480.1	Cell division protein FtsZ 	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2505.1.S1_s_at	A	A1TS	POPTR_0005s12770	POPTR_0005s12770 (11)	scaffold_5:9586084-9586456(+) (11)	NA	C4XGC2	Flavoprotein wrbA	AT4G36750.1	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g019550.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.2506.1.S1_at	A	A1TS	POPTR_0010s22750	POPTR_0010s22750 (11)	scaffold_10:19542482-19543567(-) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT2G37150.3	RING/U-box superfamily protein 	LOC_Os05g07070.8	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr7g121220.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2507.1.A1_at	A	A1TS	POPTR_0017s02340	POPTR_0017s02340 (10)	scaffold_154:34895-35097(-) (9)//scaffold_17:1685928-1691638(-) (9)//scaffold_17:1717221-1717681(-) (10)	NA	Q43644	"NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial"	AT5G37510.1	"NADH-ubiquinone dehydrogenase, mitochondrial, putative "	LOC_Os03g50540.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr3g087270.1	Ferredoxin 	GO:0055114|oxidation reduction	"GO:0016651|""oxidoreductase activity, acting on NADH or NADPH""||GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity"	NA
Ptp.2509.1.S1_at	A	A1TS	POPTR_0010s17060	POPTR_0010s17060 (11)	scaffold_10:15818514-15818806(+) (11)	NA	Q9C533	Probable S-acyltransferase At1g69420	AT1G69420.1	DHHC-type zinc finger family protein 	LOC_Os03g11110.1	"zinc finger family protein, putative, expressed"	Medtr5g045820.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.251.1.S1_at	A	A1TS	POPTR_0004s06460	POPTR_0004s06460 (11)	scaffold_4:5230281-5231595(+) (11)	NA	O23710	Proteasome subunit beta type-7-A	AT3G27430.2	N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 	LOC_Os05g09490.2	"peptidase, T1 family, putative, expressed"	Medtr7g032520.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.2510.2.S1_s_at	A	A1TS	POPTR_0008s01310	POPTR_0008s01310 (11)	scaffold_8:635742-635979(-) (11)	NA	Q66GR0	Fasciclin-like arabinogalactan protein 17	AT5G06390.1	FASCICLIN-like arabinogalactan protein 17 precursor 	LOC_Os03g57460.1	"fasciclin domain containing protein, expressed"	Medtr2g104610.1	Beta-Ig-H3/fasciclin; Myristoyl-CoA:protein N-myristoyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2511.1.S1_at	A	A1MS	POPTR_0011s09550	POPTR_0011s09550 (9)	scaffold_11:11874672-11874784(+) (9)	NA	Q8VYE2	Mitochondrial import inner membrane translocase subunit TIM50	AT1G55900.1	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 	LOC_Os05g43770.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr5g103110.1	NLI interacting factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2512.1.S1_at	A	A1TS	POPTR_0002s03580	POPTR_0002s03580 (11)	scaffold_2:2220243-2220278(-) (11)	NA	P52577	Isoflavone reductase homolog P3	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.2512.1.S1_s_at	A	A1TS	POPTR_0002s03580	POPTR_0002s03580 (11)	scaffold_2:2219848-2220221(-) (11)	NA	P52577	Isoflavone reductase homolog P3	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.2512.1.S1_x_at	A	A1TS	POPTR_0002s03580	POPTR_0002s03580 (11)	scaffold_2:2219902-2220493(-) (11)	NA	P52577	Isoflavone reductase homolog P3	AT1G75280.1	NmrA-like negative transcriptional regulator family protein 	LOC_Os06g27770.1	"isoflavone reductase homolog IRL, putative, expressed"	Medtr3g162390.1	NmrA-like 	GO:0006808|regulation of nitrogen utilization||GO:0050789|regulation of biological process	GO:0016564|transcription repressor activity	NA
Ptp.2514.1.S1_at	A	A1TS	POPTR_0003s19220	POPTR_0003s19220 (10)	scaffold_3:18012164-18012469(-) (10)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g124870.1	"Auxin-induced protein 5NG4, related "	NA	NA	GO:0016020|membrane
Ptp.2515.1.S1_at	A	A1TS	POPTR_0012s07560	POPTR_0012s07560 (10)	scaffold_12:8483787-8484009(-) (10)	NA	Q869R9	Myb-like protein J	AT1G19000.2	Homeodomain-like superfamily protein 	LOC_Os10g41200.1	"MYB family transcription factor, putative, expressed"	Medtr8g105400.1	"Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2518.1.S1_at	A	A1TS	POPTR_0018s09730	POPTR_0018s09730 (11)	scaffold_18:10756337-10756625(-) (11)	NA	P17784	Fructose-bisphosphate aldolase cytoplasmic isozyme	AT2G36460.1	Aldolase superfamily protein 	LOC_Os05g33380.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g077730.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.2518.1.S1_x_at	A	A1TS	POPTR_0018s09730	POPTR_0018s09730 (11)	scaffold_18:10756279-10756625(-) (11)	NA	P17784	Fructose-bisphosphate aldolase cytoplasmic isozyme	AT2G36460.1	Aldolase superfamily protein 	LOC_Os05g33380.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr5g077730.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.252.1.A1_at	A	A1MA	POPTR_0010s09560	POPTR_0010s09560 (11)	scaffold_10:10316349-10316567(+) (11)	NA	Q5ZLM0	Parafibromin	AT3G22590.1	PLANT HOMOLOGOUS TO PARAFIBROMIN 	LOC_Os03g46190.2	"parafibromin, putative, expressed"	Medtr5g007100.1	"RNA pol II accessory factor, Cdc73 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2520.2.S1_s_at	A	A2TS	POPTR_0006s24780	POPTR_0006s24780 (11)//POPTR_0018s05010 (11)	scaffold_18:4432705-4432740(-) (11)//scaffold_6:23336135-23336170(+) (11)	NA	NA	NA	AT2G25970.1	KH domain-containing protein 	LOC_Os02g13130.1	"KH domain-containing protein, putative, expressed"	Medtr1g020830.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.2523.1.S1_at	A	A1TS	POPTR_0018s12410	POPTR_0018s12410 (9)	scaffold_18:12898250-12898282(+) (9)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr8g122340.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2523.1.S1_s_at	A	A1TS	POPTR_0018s12410	POPTR_0018s12410 (11)	scaffold_18:12897867-12898190(+) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr8g122340.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2524.1.S1_at	A	A1TS	POPTR_0008s13450	POPTR_0008s13450 (9)	scaffold_8:8857753-8858092(+) (9)	NA	NA	NA	AT1G68060.1	microtubule-associated proteins 70-1 	LOC_Os02g50320.1	"ATMAP70 protein, putative, expressed"	Medtr4g157060.1	Myosin II heavy chain-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2525.1.S1_at	A	A1TS	POPTR_0001s31470	POPTR_0001s31470 (11)	scaffold_1:29762454-29763100(+) (11)	NA	P42734	Probable cinnamyl alcohol dehydrogenase 9	AT4G39330.1	cinnamyl alcohol dehydrogenase 9 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr4g141720.1	"Alcohol dehydrogenase, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2526.1.A1_at	A	A1TS	POPTR_0005s18960	POPTR_0005s18960 (11)	scaffold_5:17458603-17459332(+) (11)	NA	P28523	Casein kinase II subunit alpha	AT2G23070.1	Protein kinase superfamily protein 	LOC_Os07g02350.1	"casein kinase II subunit alpha-2, putative, expressed"	Medtr5g015920.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2528.1.S1_s_at	A	A1TS	POPTR_0008s20300	POPTR_0008s20300 (11)	scaffold_8:14053434-14053921(-) (11)	NA	Q9ZS91	Peptide methionine sulfoxide reductase B5	AT4G04830.1	methionine sulfoxide reductase B5 	LOC_Os03g24600.1	"peptide methionine sulfoxide reductase msrB, putative, expressed"	Medtr2g026010.1	Mss4-like 	GO:0055114|oxidation reduction	GO:0008113|peptide-methionine-(S)-S-oxide reductase activity	NA
Ptp.253.1.S1_at	A	A1TS	POPTR_0002s05080	POPTR_0002s05080 (11)	scaffold_2:3289250-3289541(+) (11)	NA	Q54W07	Probable serine/threonine-protein kinase BUD32 homolog	AT5G26110.1	Protein kinase superfamily protein 	LOC_Os10g28640.1	"RIO1 family protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2530.1.S1_s_at	A	A1TS	POPTR_0003s02410	POPTR_0003s02410 (11)	scaffold_3:2500191-2500998(+) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.1	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2530.2.S1_s_at	A	A1TS	POPTR_0003s02400	POPTR_0003s02400 (11)	scaffold_3:2491801-2492065(+) (11)	NA	Q0WV90	Topless-related protein 1	AT1G80490.2	TOPLESS-related 1 	LOC_Os03g14980.2	"lissencephaly type-1-like homology motif, putative, expressed"	Medtr3g058880.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2532.1.S1_x_at	A	A1TS	POPTR_0014s07250	POPTR_0014s07250 (11)	scaffold_14:5478072-5478570(-) (11)	NA	O80845	Peroxisomal membrane protein 11D	AT2G45740.3	peroxin 11D 	LOC_Os06g03660.2	"peroxisomal biogenesis factor 11, putative, expressed"	Medtr7g083810.1	Peroxisomal biogenesis factor 11 	GO:0016559|peroxisome fission	NA	GO:0005778|peroxisomal membrane
Ptp.2533.1.S1_at	A	A1TS	POPTR_0018s03690	POPTR_0018s03690 (11)	scaffold_18:3143034-3144896(+) (11)	NA	Q8LAZ7	COP9 signalosome complex subunit 5b	AT1G22920.1	COP9 signalosome 5A 	LOC_Os04g56070.1	"COP9 signalosome complex subunit 5b, putative, expressed"	Medtr3g133410.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2536.1.A1_at	A	A1TS	POPTR_0009s16500	POPTR_0009s16500 (11)	scaffold_9:12515821-12517878(-) (11)	NA	Q5R4W3	DNA polymerase epsilon subunit 3	AT2G27470.1	"nuclear factor Y, subunit B11 "	LOC_Os09g39490.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr4g140740.1	Transcription factor CBF/NF-Y/archaeal histone; Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2537.1.S1_at	A	A1TS	POPTR_0017s00360	POPTR_0017s00360 (9)	scaffold_17:110146-112674(+) (9)	NA	O80575	"6,7-dimethyl-8-ribityllumazine synthase, chloroplastic"	AT2G44050.1	"6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase "	LOC_Os04g42000.1	"6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor, putative, expressed"	NA	NA	GO:0009231|riboflavin biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	NA	GO:0009349|riboflavin synthase complex
Ptp.2538.1.S1_at	A	A1TS	POPTR_0006s12500	POPTR_0006s12500 (11)	scaffold_6:9657000-9657925(+) (11)	NA	Q7XSQ7	Thioredoxin-like 3-3	AT3G53220.1	Thioredoxin superfamily protein 	LOC_Os05g40190.1	"thioredoxin, putative, expressed"	Medtr8g005420.1	Thioredoxin fold; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2540.1.S1_s_at	A	A1TS	POPTR_0007s08390	POPTR_0007s08390 (11)	scaffold_7:7159698-7159858(+) (11)	NA	O23755	Elongation factor 2	AT1G56070.1	Ribosomal protein S5/Elongation factor G/III/V family protein 	LOC_Os02g32030.1	"elongation factor, putative, expressed"	Medtr2g088480.1	"Translation factor; Elongation factor G, III and V "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.2542.1.S1_at	A	A1TS	POPTR_0001s26150	POPTR_0001s26150 (11)	scaffold_1:25234502-25234944(+) (11)	NA	Q8L7T3	Ubiquitin-conjugating enzyme E2 20	AT1G50490.1	ubiquitin-conjugating enzyme 20 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr4g103970.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2545.1.S1_at	A	A1TS	POPTR_0013s13220	POPTR_0013s13220 (11)	scaffold_13:13780820-13780993(+) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2545.1.S1_x_at	A	A1TS	POPTR_0013s13220	POPTR_0013s13220 (11)	scaffold_13:13780820-13780993(+) (11)	NA	Q6UNT2	60S ribosomal protein L5	AT5G39740.2	ribosomal protein L5 B 	LOC_Os01g67134.1	"ribosomal L18p/L5e family protein, putative, expressed"	Medtr3g163560.1	Eukaryotic ribosomal protein L5 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2547.1.S1_s_at	A	A2TS	POPTR_0004s16450	POPTR_0009s12150 (9)//POPTR_0004s16450 (9)	scaffold_4:16910224-16910261(-) (9)//scaffold_9:9959297-9959334(-) (9)	NA	P46301	40S ribosomal protein S25	AT4G39200.1	Ribosomal protein S25 family protein 	LOC_Os08g44480.1	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2548.1.S1_s_at	A	A1TS	POPTR_0004s08540	POPTR_0004s08540 (11)	scaffold_4:7111843-7112176(-) (11)	NA	Q9JJW6	RNA and export factor-binding protein 2	AT5G37720.2	ALWAYS EARLY 4 	LOC_Os08g33120.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g087650.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.2549.1.S1_at	A	A1TS	POPTR_0009s02450	POPTR_0009s02450 (11)	scaffold_9:3220867-3221600(+) (11)	NA	P19950	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os02g06700.2	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2550.1.S1_at	A	A1TS	POPTR_0002s04790	POPTR_0002s04790 (11)	scaffold_2:3024300-3024595(+) (11)	NA	P23525	"37 kDa inner envelope membrane protein, chloroplastic"	AT3G63410.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os07g08200.1	"methyltransferase domain containing protein, putative, expressed"	Medtr1g083540.1	"37 kDa inner envelope membrane protein, chloroplast precursor, putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.2551.1.S1_at	A	A1TS	POPTR_0010s20010	POPTR_0010s20010 (10)	scaffold_10:17758698-17759219(+) (11)	NA	P58684	Probable signal peptidase complex subunit 2	AT2G39960.1	Microsomal signal peptidase 25 kDa subunit (SPC25) 	LOC_Os04g36859.1	"signal peptidase complex subunit 2, putative, expressed"	Medtr5g089240.1	Microsomal signal peptidase 25 kDa subunit 	GO:0044260|cellular macromolecule metabolic process||GO:0006508|proteolysis||GO:0006465|signal peptide processing	GO:0008233|peptidase activity	GO:0005787|signal peptidase complex||GO:0016021|integral to membrane||GO:0071212|subsynaptic reticulum
Ptp.2552.1.S1_s_at	A	A1TS	POPTR_0012s07060	POPTR_0012s07060 (11)	scaffold_12:7741885-7742375(+) (11)	NA	Q9CA67	"Geranylgeranyl diphosphate reductase, chloroplastic"	AT1G74470.1	Pyridine nucleotide-disulphide oxidoreductase family protein 	LOC_Os02g51080.1	"FAD binding domain containing protein, expressed"	Medtr5g094790.1	"Geranylgeranyl reductase, plantal and prokaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2555.1.A1_at	A	A1TS	POPTR_0001s12900	POPTR_0001s12900 (11)	scaffold_1:10011746-10011931(+) (11)	NA	NA	NA	AT5G64680.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g15520.1	expressed protein	Medtr8g012770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2556.1.S1_s_at	A	A1TS	POPTR_0017s05860	POPTR_0017s05860 (11)	scaffold_17:4548925-4549265(-) (11)	NA	O22845	Calmodulin-like protein 5	AT2G43290.1	Calcium-binding EF-hand family protein 	LOC_Os04g41540.1	"OsCML22 - Calmodulin-related calcium sensor protein, expressed"	Medtr2g118470.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2557.1.S1_at	A	A1TS	POPTR_0016s05320	POPTR_0016s05320 (11)	scaffold_16:3279072-3279889(+) (11)	NA	Q54D08	Protein LST8 homolog	AT3G18140.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os03g47780.1	"WD repeat-containing protein, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2558.1.S1_at	A	A1TS	POPTR_0008s00560	POPTR_0008s00560 (11)	scaffold_8:236636-237530(+) (11)	NA	Q9SM09	V-type proton ATPase catalytic subunit A	AT1G78900.2	vacuolar ATP synthase subunit A 	LOC_Os06g45120.1	"ATP synthase, putative, expressed"	Medtr1g137900.1	AAA ATPase 	GO:0044281|small molecule metabolic process||GO:0015986|ATP synthesis coupled proton transport	"GO:0046961|""proton-transporting ATPase activity, rotational mechanism""||GO:0046933|""hydrogen ion transporting ATP synthase activity, rotational mechanism"""	"GO:0033178|""proton-transporting two-sector ATPase complex, catalytic domain"""
Ptp.256.1.S1_s_at	A	A1TS	POPTR_0014s09340	POPTR_0014s09340 (11)	scaffold_14:6945244-6947716(+) (11)	NA	NA	NA	AT2G46420.1	Plant protein 1589 of unknown function 	LOC_Os01g12080.1	"plant-specific domain TIGR01589 family protein, putative, expressed"	AC233671_11.1	Uncharacterized plant-specific domain 01589 AC233671.1 39915-41898 H EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2560.1.S1_s_at	A	A1TS	POPTR_0013s06360	POPTR_0013s06360 (11)	scaffold_13:4913161-4913935(+) (11)	NA	Q4PGW7	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr7g103920.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2560.3.S1_s_at	A	A1TS	POPTR_0013s06360	POPTR_0013s06360 (11)	scaffold_13:4914153-4914227(+) (11)	NA	Q4PGW7	NADH-cytochrome b5 reductase 1	AT5G17770.1	NADH:cytochrome B5 reductase 1 	LOC_Os05g40990.1	"NADH-cytochrome b5 reductase, putative, expressed"	Medtr7g103920.1	Nitrate reductase NADH dependant 	GO:0055114|oxidation reduction	GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity	NA
Ptp.2561.1.A1_s_at	A	A1TS	POPTR_0005s24120	POPTR_0005s24120 (11)	scaffold_5:22755608-22755647(-) (11)	NA	P31674	40S ribosomal protein S15	AT5G09500.1	Ribosomal protein S19 family protein 	LOC_Os07g08660.1	"40S ribosomal protein S15, putative, expressed"	Medtr4g157310.1	Ribosomal protein S19/S15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2562.1.S1_s_at	A	A1TS	POPTR_0006s23070	POPTR_0006s23070 (11)	scaffold_6:21897153-21899174(+) (11)	NA	Q9M5L0	60S ribosomal protein L35	AT5G02610.1	Ribosomal L29 family protein  	LOC_Os04g30730.1	"ribosomal protein L29, putative, expressed"	Medtr7g089730.1	Ribosomal protein L29 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2563.2.S1_at	A	A1MS	POPTR_0006s26610	POPTR_0006s26610 (10)	scaffold_6:24777682-24777916(+) (10)	NA	P48502	Cytochrome b-c1 complex subunit 7	AT5G25450.1	"Cytochrome bd ubiquinol oxidase, 14kDa subunit "	LOC_Os03g59220.1	"cytochrome b-c1 complex subunit 7, putative, expressed"	Medtr1g013430.1	"Cytochrome bd ubiquinol oxidase, 14 kDa subunit "	"GO:0006122|""mitochondrial electron transport, ubiquinol to cytochrome c"""	GO:0008121|ubiquinol-cytochrome-c reductase activity	NA
Ptp.2565.1.A1_at	A	A1TS	POPTR_0006s07780	POPTR_0006s07780 (11)	scaffold_6:5698273-5699626(+) (11)	NA	B9HBA8	"Biotin carboxylase 1, chloroplastic"	AT5G35360.1	acetyl Co-enzyme a carboxylase biotin carboxylase subunit 	LOC_Os12g41250.1	"methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed"	Medtr4g161110.1	"Biotin carboxylase, C-terminal; "	GO:0008152|metabolic process	GO:0016874|ligase activity||GO:0005524|ATP binding	NA
Ptp.2566.1.S1_at	A	A1TS	POPTR_0015s04250	POPTR_0015s04250 (11)	scaffold_15:4309370-4310447(+) (11)	NA	O24076	Guanine nucleotide-binding protein subunit beta-like protein	AT1G48630.1	receptor for activated C kinase 1B 	LOC_Os01g49290.1	"WD repeat-containing protein, putative, expressed"	Medtr4g155480.1	"Guanine nucleotide-binding protein subunit beta-like protein, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2567.1.S1_a_at	A	A1TS	POPTR_0004s21380	POPTR_0004s21380 (11)	scaffold_4:20538517-20539051(-) (11)	NA	NA	NA	AT5G22460.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g05600.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2567.1.S1_s_at	A	A1TS	POPTR_0004s21380	POPTR_0004s21380 (11)	scaffold_4:20538543-20539093(-) (11)	NA	NA	NA	AT5G22460.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os12g05600.1	"hydrolase, alpha/beta fold family protein, putative, expressed"	Medtr2g107930.1	"esterase/lipase/thioesterase family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2568.1.S1_s_at	A	A1TS	POPTR_0002s14740	POPTR_0002s14740 (11)	scaffold_2:10946874-10947221(+) (11)	NA	P05466	"3-phosphoshikimate 1-carboxyvinyltransferase, chloroplastic"	AT2G45300.1	"RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta "	LOC_Os06g04280.1	"3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed"	Medtr4g025530.1	3-phosphoshikimate 1-carboxyvinyltransferase 	NA	"GO:0016765|""transferase activity, transferring alkyl or aryl (other than methyl) groups"""	NA
Ptp.257.1.S1_s_at	A	A1TS	POPTR_0001s25780	POPTR_0001s25780 (11)	scaffold_1:24808713-24808999(-) (11)	NA	Q84T03	DEAD-box ATP-dependent RNA helicase 27	AT3G18600.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g58810.1	"DEAD-box ATP-dependent RNA helicase, putative, expressed"	Medtr8g115790.1	"Helicase, C-terminal; ; "	NA	GO:0008026|ATP-dependent helicase activity||GO:0003676|nucleic acid binding||GO:0005524|ATP binding	NA
Ptp.2570.1.S1_at	A	A1TS	POPTR_0008s15290	POPTR_0008s15290 (11)	scaffold_8:10204043-10204389(+) (11)	NA	Q9FDW0	Protein FRIGIDA	AT3G22440.1	FRIGIDA-like protein 	LOC_Os07g07680.1	"frigida, putative, expressed"	Medtr4g158690.1	"Peptidase S8 and S53, subtilisin, kexin, sedolisin; Frigida-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2572.1.S1_at	A	A1TS	POPTR_0017s13180	POPTR_0017s13180 (11)	scaffold_17:13359286-13359615(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2573.1.S1_at	A	A1TS	POPTR_0015s05010	POPTR_0015s05010 (11)	scaffold_15:5247638-5248176(-) (11)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2574.1.S1_at	A	A1TS	POPTR_0009s06180	POPTR_0009s06180 (11)	scaffold_9:6038904-6039423(-) (11)	NA	Q08069	40S ribosomal protein S8	AT5G59240.1	Ribosomal protein S8e family protein 	LOC_Os04g28180.1	"ribosomal protein, putative, expressed"	Medtr8g012680.1	Ribosomal protein S8E 	NA	NA	GO:0005622|intracellular
Ptp.2577.1.S1_s_at	A	A1TS	POPTR_0003s11340	POPTR_0003s11340 (11)	scaffold_3:12177633-12179276(+) (11)	NA	NA	NA	AT1G62790.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g47200.2	"LTPL85 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106370.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2578.1.S1_s_at	A	A1TS	POPTR_0002s10580	POPTR_0002s10580 (11)	scaffold_2:7673367-7673936(+) (11)	NA	Q9FUY6	MADS-box protein JOINTLESS	AT2G22540.1	K-box region and MADS-box transcription factor family protein  	LOC_Os02g52340.1	"OsMADS22 - MADS-box family gene with MIKCc type-box, expressed"	Medtr5g033820.1	"Transcription factor, MADS-box; Transcription factor, K-box "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2581.1.S1_at	A	A1TS	POPTR_0008s06720	POPTR_0008s06720 (11)	scaffold_8:4016301-4017947(-) (11)	NA	Q9S7W1	"Chlorophyll a-b binding protein CP29.3, chloroplastic"	AT2G40100.1	light harvesting complex photosystem II 	LOC_Os07g37240.1	"chlorophyll A-B binding protein, putative, expressed"	Medtr3g093420.1	Chlorophyll A-B binding protein 	"GO:0009765|""photosynthesis, light harvesting"""	NA	GO:0016020|membrane
Ptp.2582.1.S1_s_at	A	A1TS	POPTR_0005s19160	POPTR_0005s19160 (11)	scaffold_5:17772923-17773272(+) (11)	NA	O04616	"Uncharacterized protein At4g01150, chloroplastic"	AT4G38100.1	unknown protein; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g11400.1	expressed protein	Medtr5g033900.1	"thylakoid membrane phosphoprotein 14 kda, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2583.1.S1_at	A	A1TS	POPTR_0007s02460	POPTR_0007s02460 (11)	scaffold_7:1457911-1457951(-) (11)	NA	Q8H159	Polyubiquitin 10	AT4G05320.4	polyubiquitin 10 	LOC_Os06g46770.5	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2585.1.S1_at	A	A1TS	POPTR_0016s03230	POPTR_0016s03230 (11)	scaffold_16:1652494-1653167(+) (11)	NA	Q15032	R3H domain-containing protein 1	AT3G56680.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr7g105960.1	Single-stranded nucleic acid binding R3H 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2586.1.S1_s_at	A	A1TS	POPTR_0006s24570	POPTR_0006s24570 (11)	scaffold_6:23165723-23166379(+) (11)	NA	O49954	"Glycine dehydrogenase [decarboxylating], mitochondrial"	AT4G33010.1	glycine decarboxylase P-protein 1 	LOC_Os06g40940.2	"glycine dehydrogenase, putative, expressed"	Medtr1g020360.1	Glycine cleavage system P-protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2588.1.S1_s_at	A	A1TS	POPTR_0001s16400	POPTR_0001s16400 (11)	scaffold_1:13187817-13187862(+) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.2	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.2588.2.S1_at	A	A1MS	POPTR_0001s16400	POPTR_0001s16400 (11)	scaffold_1:13186061-13186220(+) (11)	NA	Q9SSA8	Ethylene-responsive transcription factor RAP2-12	AT1G53910.2	related to AP2 12 	LOC_Os06g09390.2	"AP2 domain containing protein, expressed"	Medtr8g026300.2	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.259.1.S1_s_at	A	A1TS	POPTR_0003s07880	POPTR_0003s07880 (11)	scaffold_3:9391014-9392121(-) (11)	NA	Q8YXQ7	Carbamoyl-phosphate synthase small chain	AT3G27740.1	carbamoyl phosphate synthetase A 	LOC_Os02g47850.2	"class I glutamine amidotransferase, putative, expressed"	Medtr8g109600.1	"Carbamoyl-phosphate synthase, small subunit; Glutamine amidotransferase, class I, active site "	GO:0006807|nitrogen compound metabolic process	GO:0004086|carbamoyl-phosphate synthase activity	NA
Ptp.2590.1.A1_at	A	A1TS	POPTR_0006s10320	POPTR_0006s10320 (11)	scaffold_6:7734596-7734648(+) (11)	NA	P50580	Proliferation-associated protein 2G4	AT3G51800.3	metallopeptidase M24 family protein 	LOC_Os05g28280.1	"peptidase, M24 family protein, putative, expressed"	Medtr2g134910.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.2591.1.S1_at	A	A1TS	POPTR_0004s14780	POPTR_0004s14780 (11)	scaffold_4:15417259-15417730(-) (11)	NA	Q06GK0	"30S ribosomal protein S7, chloroplastic"	ATCG00900.1	Ribosomal protein S7p/S5e family protein 	LOC_Os10g21372.1	"chloroplast 30S ribosomal protein S7, putative"	Medtr3g043700.1	Ribosomal protein S7 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2592.2.S1_x_at	A	A1TS	POPTR_0005s25420	POPTR_0005s25420 (11)	scaffold_5:23693293-23694270(-) (11)	NA	Q07090	Thioredoxin H-type 2	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr1g028610.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2592.3.S1_x_at	A	A1TS	POPTR_0005s25420	POPTR_0005s25420 (11)	scaffold_5:23693265-23694262(-) (11)	NA	Q07090	Thioredoxin H-type 2	AT3G51030.1	thioredoxin H-type 1 	LOC_Os07g08840.1	"thioredoxin, putative, expressed"	Medtr1g028610.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.2593.1.S1_s_at	A	A1TS	POPTR_0001s10060	POPTR_0001s10060 (11)	scaffold_1:7787113-7787620(-) (11)	NA	NA	NA	AT5G60750.1	CAAX amino terminal protease family protein 	LOC_Os06g30910.1	"CAAX amino terminal protease family protein, putative, expressed"	Medtr1g125900.2	Abortive infection protein 	NA	NA	GO:0016020|membrane
Ptp.2594.1.S1_at	A	A1TS	POPTR_0012s09510	POPTR_0012s09510 (11)	scaffold_12:10512566-10512793(+) (11)	NA	Q93Y35	Probable 26S proteasome non-ATPase regulatory subunit 6	AT4G24820.2	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os04g40850.1	"26S proteasome non-ATPase regulatory subunit 6, putative, expressed"	Medtr8g109840.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2595.1.S1_s_at	A	A1TS	POPTR_0003s01090	POPTR_0003s01090 (11)	scaffold_3:955536-955906(-) (11)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.2596.1.S1_at	A	A1TS	POPTR_0006s26270	POPTR_0006s26270 (11)	scaffold_6:24522472-24524070(-) (11)	NA	P82715	"PsbP domain-containing protein 5, chloroplastic"	AT5G11450.1	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein 	LOC_Os01g43070.1	"psbP-related thylakoid lumenal protein 4, chloroplast precursor, putative, expressed"	Medtr3g136110.1	Photosystem II oxygen evolving complex protein PsbP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2597.1.S1_at	A	A1TS	POPTR_0002s09880	POPTR_0002s09880 (11)	scaffold_2:7095943-7096414(+) (11)	NA	NA	NA	AT4G08950.1	Phosphate-responsive 1 family protein 	LOC_Os02g52040.1	"phosphate-induced protein 1 conserved region domain containing protein, expressed"	Medtr4g144900.1	Phosphate-induced protein 1 conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2598.1.S1_at	A	A1TS	POPTR_0015s04280	POPTR_0015s04280 (11)	scaffold_15:4333505-4334114(-) (11)	NA	Q9LV33	Beta-glucosidase 44	AT3G18080.1	B-S glucosidase 44 	LOC_Os01g32364.1	"Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed"	Medtr3g040490.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2599.1.S1_at	A	A1TS	POPTR_0002s02340	POPTR_0002s02340 (11)	scaffold_2:1324748-1324814(+) (11)	NA	P18025	Tubulin beta-1 chain	AT1G20010.1	tubulin beta-5 chain 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.2599.1.S1_s_at	A	A1TS	POPTR_0002s02340	POPTR_0002s02340 (11)	scaffold_2:1324888-1325308(+) (11)	NA	P18025	Tubulin beta-1 chain	AT1G20010.1	tubulin beta-5 chain 	LOC_Os06g46000.1	"tubulin/FtsZ domain containing protein, putative, expressed"	AC147501_26.1	Cell division protein FtsZ AC147501.9 121998-125230 E EGN_Mt090430 200	GO:0051258|protein polymerization	GO:0005525|GTP binding||GO:0003924|GTPase activity	GO:0043234|protein complex
Ptp.260.1.S1_at	A	A1TS	POPTR_0010s10480	POPTR_0010s10480 (10)	scaffold_10:10974629-10974687(-) (10)	NA	P49756	RNA-binding protein 25	AT1G60200.1	splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein 	LOC_Os08g32100.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr5g035770.1	"Splicing factor PWI; Nucleotide-binding, alpha-beta plait "	GO:0044260|cellular macromolecule metabolic process||GO:0006397|mRNA processing	GO:0003676|nucleic acid binding	NA
Ptp.2600.1.S1_s_at	A	A1TS	POPTR_0011s13490	POPTR_0011s13490 (11)	scaffold_11:16238447-16238564(+) (11)	NA	Q9C681	Probable histone H2A.1	AT1G51060.1	histone H2A 10 	LOC_Os08g33100.1	"core histone H2A/H2B/H3/H4, putative, expressed"	Medtr2g096630.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2601.1.S1_a_at	A	A1TS	POPTR_0009s12110	POPTR_0009s12110 (11)	scaffold_9:9932377-9932712(-) (11)	NA	O48671	Protein RER1B	AT2G21600.1	endoplasmatic reticulum retrieval protein 1B 	LOC_Os01g01640.1	"Rer1 protein, putative, expressed"	Medtr4g095960.1	Retrieval of early ER protein Rer1 	NA	NA	GO:0016021|integral to membrane
Ptp.2602.1.S1_x_at	A	A1TS	POPTR_0001s40300	POPTR_0001s40300 (11)	scaffold_1:39656826-39658733(+) (11)	NA	Q94A97	Ubiquitin-conjugating enzyme E2 35	AT1G78870.2	ubiquitin-conjugating enzyme 35 	LOC_Os01g48280.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr5g083390.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.2604.1.S1_x_at	A	A1TS	POPTR_0008s05480	POPTR_0008s05480 (11)	scaffold_8:3171328-3171686(-) (11)	NA	P27322	Heat shock cognate 70 kDa protein 2	AT3G12580.1	heat shock protein 70 	LOC_Os11g47760.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2605.1.A1_at	A	A1TS	POPTR_0001s14280	POPTR_0001s14280 (11)	scaffold_1:11233898-11236024(+) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os02g57260.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2608.1.S1_s_at	A	A1TS	POPTR_0006s07720	POPTR_0006s07720 (11)	scaffold_6:5627975-5628388(+) (11)	NA	Q9ASY8	Mitochondrial import receptor subunit TOM7-1	AT5G41685.1	"Mitochondrial outer membrane translocase complex, subunit Tom7 "	LOC_Os05g50654.1	"mitochondrial import receptor subunit TOM7-1, putative, expressed"	Medtr3g076590.1	TOM7 	GO:0006886|intracellular protein transport	GO:0015450|P-P-bond-hydrolysis-driven protein transmembrane transporter activity	GO:0005741|mitochondrial outer membrane
Ptp.2609.1.S1_s_at	A	A1TS	POPTR_0006s23870	POPTR_0006s23870 (11)	scaffold_6:22596460-22596753(+) (11)	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2609.2.S1_at	A	A1TS	POPTR_0018s08510	POPTR_0018s08510 (11)	scaffold_18:9466407-9466480(-) (11)	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2609.2.S1_x_at	A	A1TS	POPTR_0018s08510	POPTR_0018s08510 (11)	scaffold_18:9466407-9466534(-) (11)	NA	Q9FJA6	40S ribosomal protein S3-3	AT5G35530.1	Ribosomal protein S3 family protein 	LOC_Os03g38000.1	"40S ribosomal protein S3-1, putative, expressed"	AC235668_15.1	Eukaryotic/archaeal ribosomal protein S3 AC235668.1 46796-45415 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.261.1.S1_s_at	A	A1TS	POPTR_0001s37150	POPTR_0001s37150 (11)	scaffold_1:35980652-35981084(-) (11)	NA	Q9LDH0	"Beta-(1,2)-xylosyltransferase"	AT5G55500.1	"beta-1,2-xylosyltransferase "	LOC_Os08g39380.1	"beta 1,2-xylosyltransferase, putative, expressed"	Medtr3g076770.1	"beta 1,2 xylosyltransferase, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2610.3.A1_a_at	A	A1TS	POPTR_0005s20830	POPTR_0005s20830 (11)	scaffold_5:19971770-19972119(-) (11)	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2610.3.A1_s_at	A	A1TS	POPTR_0005s20830	POPTR_0005s20830 (11)	scaffold_5:19969431-19969476(-) (11)	NA	Q8VZN9	Probable protein phosphatase 2C 11	AT1G43900.1	Protein phosphatase 2C family protein 	LOC_Os02g05630.1	"protein phosphatase 2C, putative, expressed"	Medtr3g138650.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2611.2.A1_a_at	A	A1TS	POPTR_0010s08670	POPTR_0010s08670 (11)	scaffold_10:9563486-9564129(+) (11)	NA	NA	NA	AT3G23090.1	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os03g58480.1	"seed specific protein Bn15D14A, putative, expressed"	Medtr1g089880.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2613.1.A1_x_at	A	A1TS	POPTR_0018s06650	POPTR_0018s06650 (11)	scaffold_18:6696249-6698029(+) (11)	NA	Q9M573	60S ribosomal protein L31	AT2G19740.1	Ribosomal protein L31e family protein 	LOC_Os08g39500.1	"60S ribosomal protein L31, putative, expressed"	Medtr6g093440.1	Ribosomal protein L31e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2615.1.S1_s_at	A	A1TS	POPTR_0005s07770	POPTR_0005s07770 (11)	scaffold_5:5314033-5314640(-) (11)	NA	Q94FB9	ABC transporter D family member 1	AT4G39850.1	peroxisomal ABC transporter 1 	LOC_Os01g73530.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr3g101500.1	Peroxysomal long chain fatty acyl transporter 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.2617.1.S1_at	A	A1TS	POPTR_0003s20310	POPTR_0003s20310 (10)	scaffold_3:18817568-18818053(-) (10)	NA	Q0D3J9	Zinc finger CCCH domain-containing protein 53	AT3G51950.2	Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein 	LOC_Os07g48410.2	"RNA-binding zinc finger protein, putative, expressed"	Medtr4g118330.1	RNA-binding region RNP-1 (RNA recognition motif); U2 auxiliary factor small subunit 	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2618.1.S1_at	A	A1TS	POPTR_0006s04330	POPTR_0006s04330 (10)	scaffold_6:2949842-2950166(-) (10)	NA	P54453	Uncharacterized protein yqeH	AT3G57180.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os06g30380.1	"GTP binding protein, putative, expressed"	Medtr7g107700.1	"GTP-binding protein, HSR1-related "	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.262.1.S1_a_at	A	A2TS	POPTR_0001s02600	POPTR_0003s08950 (11)//POPTR_0001s02600 (11)	scaffold_1:2059422-2059473(-) (11)//scaffold_3:10241109-10241160(+) (11)	NA	NA	NA	AT4G17950.1	AT hook motif DNA-binding family protein 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr8g102740.1	Protein of unknown function DUF296 	NA	GO:0003677|DNA binding	NA
Ptp.262.1.S1_at	A	A1TS	POPTR_0003s08950	POPTR_0003s08950 (10)	scaffold_3:10244677-10245264(+) (10)	NA	NA	NA	AT4G17950.1	AT hook motif DNA-binding family protein 	LOC_Os10g42230.2	"AT hook motif domain containing protein, expressed"	Medtr8g102740.1	Protein of unknown function DUF296 	NA	GO:0003677|DNA binding	NA
Ptp.2620.1.S1_at	A	A1TS	POPTR_0007s01830	POPTR_0007s01830 (11)	scaffold_7:1052348-1052713(-) (11)	NA	Q6GN58	Protein YIF1B-A	AT1G30890.2	Integral membrane HRF1 family protein 	LOC_Os04g08320.1	"YIF1B, putative, expressed"	Medtr7g020670.1	Hrf1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2621.1.A1_s_at	A	A1TS	POPTR_0008s19020	POPTR_0008s19020 (11)	scaffold_8:13006439-13006896(-) (11)	NA	NA	NA	AT1G67910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). 	NA	NA	Medtr8g081780.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2622.1.S1_at	A	A1TS	POPTR_0006s10490	POPTR_0006s10490 (11)	scaffold_6:7829803-7830163(-) (11)	NA	Q9M015	Uncharacterized protein At5g01610	AT3G08890.2	"Protein of unknown function, DUF538 "	LOC_Os05g27950.1	"DUF538 domain containing protein, putative, expressed"	Medtr7g076080.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2623.1.S1_a_at	A	A1MS	POPTR_0011s17150	POPTR_0011s17150 (11)	scaffold_11:18750715-18750782(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT5G56170.1	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 	LOC_Os02g48980.1	"GPI-anchored protein, putative, expressed"	Medtr3g016820.1	"GPI-anchored protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2623.2.S1_a_at	A	A1MS	POPTR_0011s17150	POPTR_0011s17150 (11)	scaffold_11:18750716-18750894(+) (11)	NA	Q9LN01	Pentatricopeptide repeat-containing protein At1g08070	AT5G56170.1	LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 	LOC_Os02g48980.1	"GPI-anchored protein, putative, expressed"	Medtr3g016820.1	"GPI-anchored protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2627.1.A1_s_at	A	A1TS	POPTR_0013s12970	POPTR_0013s12970 (11)	scaffold_13:13567517-13567746(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2627.1.A1_x_at	A	A1TS	POPTR_0013s12970	POPTR_0013s12970 (11)	scaffold_13:13567614-13567906(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2628.1.A1_at	A	A1TS	POPTR_0001s36160	POPTR_0001s36160 (11)	scaffold_1:34671782-34672811(+) (11)	NA	Q9FJI5	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
Ptp.2628.1.A1_x_at	A	A1TS	POPTR_0001s36160	POPTR_0001s36160 (11)	scaffold_1:34671439-34672811(+) (11)	NA	Q9FJI5	"Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 2"	AT5G40760.1	glucose-6-phosphate dehydrogenase 6 	LOC_Os02g38840.2	"glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed"	Medtr7g037670.1	Glucose-6-phosphate dehydrogenase 	GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process||GO:0006006|glucose metabolic process||GO:0055114|oxidation reduction	GO:0004345|glucose-6-phosphate dehydrogenase activity	NA
Ptp.2629.1.S1_s_at	A	A1TS	POPTR_0005s23310	POPTR_0005s23310 (11)	scaffold_5:22129149-22129822(-) (11)	NA	NA	NA	AT3G22550.1	Protein of unknown function (DUF581) 	LOC_Os03g46260.1	"DUF581 domain containing protein, expressed"	Medtr1g084090.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.263.2.A1_at	A	A1TS	POPTR_0015s12490	POPTR_0015s12490 (11)	scaffold_15:12718538-12719058(-) (11)	NA	Q6PGS5	Transmembrane protein 56-B	AT1G31300.2	"TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein "	LOC_Os03g46410.1	"transmembrane protein 56, putative, expressed"	Medtr5g097670.1	"TRAM, LAG1 and CLN8 homology "	NA	NA	GO:0016021|integral to membrane
Ptp.2630.1.S1_s_at	A	A1TS	POPTR_0006s06770	POPTR_0006s06770 (11)	scaffold_6:4902171-4902813(-) (11)	NA	Q9SKK0	EIN3-binding F-box protein 1	AT2G25490.1	EIN3-binding F box protein 1 	LOC_Os02g10700.1	"OsFBL7 - F-box domain and LRR containing protein, expressed"	Medtr1g013790.1	Cyclin-like F-box 	NA	GO:0005515|protein binding	NA
Ptp.2631.1.S1_at	A	A1TS	POPTR_0012s13230	POPTR_0012s13230 (10)	scaffold_12:13477965-13478824(+) (10)	NA	P93788	Remorin	AT5G23750.2	Remorin family protein 	LOC_Os04g45070.1	"remorin, putative, expressed"	AC235674_1.1	"Remorin, C-terminal region; Remorin, N-terminal region AC235674.1 593-2899 F EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2633.1.S1_at	A	A1TS	POPTR_0004s01320	POPTR_0004s01320 (11)	scaffold_4:713253-715307(-) (11)	NA	Q39366	Putative lactoylglutathione lyase	AT1G11840.6	glyoxalase I homolog 	LOC_Os08g09250.2	"glyoxalase family protein, putative, expressed"	Medtr8g146950.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2635.1.S1_s_at	A	A1TS	POPTR_0002s26100	POPTR_0002s26100 (11)	scaffold_2:23068254-23069360(-) (11)	NA	Q9ULT0	Tetratricopeptide repeat protein 7A	AT4G28600.1	no pollen germination related 2 	LOC_Os10g33290.2	"tetratricopeptide repeat domain containing protein, expressed"	Medtr1g090090.2	"NPGR2 ; calmodulin binding ta, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2636.1.S1_at	A	A1TS	POPTR_0013s09090	POPTR_0013s09090 (10)	scaffold_13:8647682-8648234(+) (10)	NA	Q84WF5	Probable VAMP-like protein At1g33475	AT4G10170.2	SNARE-like superfamily protein 	LOC_Os08g01880.1	"synaptobrevin-related family protein, putative, expressed"	Medtr3g016650.1	Longin-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2637.1.S1_at	A	A1TS	POPTR_0006s24770	POPTR_0006s24770 (9)	scaffold_6:23325006-23326946(+) (11)	NA	P42027	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial"	AT5G11770.1	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial "	LOC_Os01g52214.1	"ubiquinone oxidoreductase, putative, expressed"	Medtr3g140060.1	"NADH dehydrogenase (ubiquinone), 20 kDa subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2637.1.S1_s_at	A	A1TS	POPTR_0006s24770	POPTR_0006s24770 (11)	scaffold_6:23326821-23327319(+) (11)	NA	P42027	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial"	AT5G11770.1	"NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial "	LOC_Os01g52214.1	"ubiquinone oxidoreductase, putative, expressed"	Medtr3g140060.1	"NADH dehydrogenase (ubiquinone), 20 kDa subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2638.1.A1_at	A	A1TS	POPTR_0013s14170	POPTR_0013s14170 (11)	scaffold_13:14466058-14466325(-) (11)	NA	Q8GZA8	Protein ULTRAPETALA 1	AT4G28190.1	"Developmental regulator, ULTRAPETALA "	LOC_Os01g57240.1	expressed protein	AC229695_17.1	"Protein ULTRAPETALA 2, putative AC229695.5 69003-71368 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2639.1.S1_at	A	A1TS	POPTR_0006s05090	POPTR_0006s05090 (11)	scaffold_6:3533574-3534971(-) (11)	NA	Q9SCM3	40S ribosomal protein S2-4	AT3G57490.1	Ribosomal protein S5 family protein 	LOC_Os03g59310.1	"ribosomal protein, putative, expressed"	Medtr4g157070.1	"Ribosomal protein S5, eukaryotic and archaeal form; ; "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome||GO:0003723|RNA binding	GO:0005840|ribosome
Ptp.2640.1.A1_at	A	A1TS	POPTR_0017s14060	POPTR_0017s14060 (11)	scaffold_17:14214488-14215037(-) (11)	NA	Q6DD45	Zinc finger CCHC domain-containing protein 8	AT5G38600.1	Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein 	LOC_Os06g30020.1	"PSP domain containing protein, expressed"	AC233657_33.1	"Zinc finger, CCHC-type; PSP, proline-rich AC233657.1 169292-178036 E EGN_Mt090430 200"	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.2641.1.S1_s_at	A	A1TS	POPTR_0006s14340	POPTR_0006s14340 (11)	scaffold_6:11664711-11665110(-) (11)	NA	O65351	Subtilisin-like protease	AT2G05920.1	Subtilase family protein 	LOC_Os09g26920.1	"OsSub57 - Putative Subtilisin homologue, expressed"	Medtr2g049250.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.2643.1.S1_s_at	A	A1TS	POPTR_0003s20840	POPTR_0003s20840 (11)	scaffold_3:19233149-19233344(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT3G13460.1	evolutionarily conserved C-terminal region 2 	LOC_Os03g06240.2	"YT521-B-like family domain containing protein, expressed"	Medtr4g136900.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2644.1.S1_s_at	A	A1TS	POPTR_0003s04200	POPTR_0003s04200 (11)	scaffold_3:4918991-4920051(-) (11)	NA	Q84LG4	Coatomer subunit zeta-2	AT1G60970.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr2g034360.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.2645.1.S1_s_at	A	A1TS	POPTR_0014s09190	POPTR_0014s09190 (10)	scaffold_14:6825841-6826294(-) (10)	NA	Q9SUP6	Probable WRKY transcription factor 53	AT4G23810.1	WRKY family transcription factor 	LOC_Os08g29660.1	"OsWRKY69 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.2646.1.S1_x_at	A	A1TS	POPTR_0011s17170	POPTR_0011s17170 (11)	scaffold_11:18759120-18759666(+) (11)	NA	Q9S7N7	"Photosystem I reaction center subunit V, chloroplastic"	AT1G55670.1	photosystem I subunit G 	LOC_Os09g30340.1	"photosystem I reaction center subunit, chloroplast precursor, putative, expressed"	Medtr3g016960.1	Photosystem I psaG/psaK protein 	GO:0015979|photosynthesis	NA	GO:0009522|photosystem I
Ptp.2647.2.S1_a_at	A	A1TS	POPTR_0014s08780	POPTR_0014s08780 (11)	scaffold_14:6507442-6507842(+) (11)	NA	NA	NA	AT2G46220.1	Uncharacterized conserved protein (DUF2358) 	LOC_Os01g12200.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2648.1.S1_s_at	A	A1TS	POPTR_0004s17400	POPTR_0004s17400 (11)	scaffold_4:17608366-17608971(-) (11)	NA	Q0WLC6	"Pentatricopeptide repeat-containing protein At4g34830, chloroplastic"	AT4G34830.1	Pentatricopeptide repeat (PPR) superfamily protein 	LOC_Os10g10170.1	"PPR repeat domain containing protein, putative, expressed"	Medtr4g098380.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.265.1.S1_s_at	A	A1TS	POPTR_0014s03510	POPTR_0014s03510 (11)	scaffold_14:2815126-2815610(-) (11)	NA	Q8GZD4	Nucleobase-ascorbate transporter 3	AT2G26510.1	Xanthine/uracil permease family protein 	LOC_Os12g39420.9	"nucleobase-ascorbate transporter, putative, expressed"	Medtr1g025100.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2651.1.A1_at	A	A1TS	POPTR_0007s06500	POPTR_0007s06500 (11)	scaffold_7:4864108-4864903(-) (11)	NA	NA	NA	AT5G10010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). 	LOC_Os04g56590.1	"ATP/GTP binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2651.2.A1_at	A	A1TS	POPTR_0007s06500	POPTR_0007s06500 (10)	scaffold_7:4863203-4863622(-) (11)	NA	NA	NA	AT5G10010.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). 	LOC_Os04g56590.1	"ATP/GTP binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2653.1.S1_a_at	A	A1MS	POPTR_0003s19140	POPTR_0003s19140 (11)	scaffold_3:17936179-17936418(-) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.2653.3.S1_s_at	A	A1TS	POPTR_0003s19140	POPTR_0003s19140 (11)	scaffold_3:17934525-17936440(-) (11)	NA	Q8H0X6	Cysteine proteinase inhibitor 6	AT3G12490.2	cystatin B 	LOC_Os01g16430.1	"cysteine proteinase inhibitor precursor protein, putative, expressed"	Medtr8g044470.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.2654.1.S1_s_at	A	A1TS	POPTR_0017s12240	POPTR_0017s12240 (11)	scaffold_17:12475200-12476206(+) (11)	NA	P55217	"Cystathionine gamma-synthase, chloroplastic"	AT3G01120.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os03g25940.4	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
Ptp.2655.1.S1_at	A	A1TS	POPTR_0001s47670	POPTR_0001s47670 (9)	scaffold_1:47815102-47815467(-) (9)	NA	Q9FG77	Probable WRKY transcription factor 2	AT5G56270.1	WRKY DNA-binding protein 2 	LOC_Os08g38990.4	"OsWRKY30 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g089650.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.2656.1.S1_at	A	A1TS	POPTR_0001s28710	POPTR_0001s28710 (11)	scaffold_1:27484344-27484793(-) (11)	NA	C0LGU7	Probable LRR receptor-like serine/threonine-protein kinase At5g45840	AT5G45840.2	Leucine-rich repeat protein kinase family protein 	LOC_Os01g10900.2	"MRH1, putative, expressed"	Medtr3g094640.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2657.1.S1_s_at	A	A1TS	POPTR_0006s14680	POPTR_0006s14680 (11)	scaffold_6:12053262-12054258(+) (11)	NA	P48980	Beta-galactosidase	AT3G13750.1	beta galactosidase 1 	LOC_Os01g39830.1	"beta-galactosidase, putative, expressed"	Medtr2g121320.1	D-galactoside/L-rhamnose binding SUEL lectin; Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0005529|sugar binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2659.1.A1_s_at	A	A1TS	POPTR_0016s07600	POPTR_0016s07600 (11)	scaffold_16:5464002-5464299(-) (11)	NA	Q9SJF3	mRNA-decapping enzyme-like protein	AT1G08370.1	decapping 1 	LOC_Os11g05650.1	"mRNA-decapping enzyme, putative, expressed"	Medtr2g107490.1	Dcp1-like decapping 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2660.1.A1_at	A	A1TS	POPTR_0005s09610	POPTR_0005s09610 (11)	scaffold_5:6728079-6728733(+) (11)	NA	P14656	Glutamine synthetase cytosolic isozyme 1-1	AT1G66200.1	glutamine synthase clone F11 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr6g080780.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.2661.1.S1_at	A	A1TS	POPTR_0012s00440	POPTR_0012s00440 (9)	scaffold_12:147920-148297(-) (9)	NA	NA	NA	AT3G49550.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G24610.1); Has 55 Blast hits to 55 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os10g36550.3	"CRP3 - Cysteine-rich family protein precursor, expressed"	Medtr5g077350.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2662.1.S1_s_at	A	A1TS	POPTR_0002s19480	POPTR_0002s19480 (11)	scaffold_2:15455024-15455982(-) (11)	NA	Q6GQT9	Nodal modulator 1	AT3G62360.1	Carbohydrate-binding-like fold 	LOC_Os01g19470.1	"nodal modulator 1 precursor, putative, expressed"	Medtr7g133160.1	Carboxypeptidase regulatory region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2664.1.A1_at	A	A1TS	POPTR_0001s29510	POPTR_0001s29510 (11)	scaffold_1:28168119-28168364(+) (11)	NA	Q9M2Y6	Uncharacterized protein At3g49720	AT3G49720.2	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g05070.1	expressed protein	Medtr2g010600.1	hypothetical protein 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.2667.1.S1_s_at	A	A1TS	POPTR_0017s07700	POPTR_0017s07700 (11)	scaffold_17:5981780-5982027(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2668.1.A1_at	A	A1TS	POPTR_0010s24560	POPTR_0010s24560 (11)	scaffold_10:20719842-20720266(+) (11)	NA	P27788	"Ferredoxin-3, chloroplastic"	AT2G27510.1	ferredoxin 3 	LOC_Os03g61960.2	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr2g107770.1	"Ferredoxin [2Fe-2S], plant "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.2672.1.A1_at	A	A1TS	POPTR_0008s00800	POPTR_0008s00800 (11)	scaffold_8:357201-358237(+) (11)	NA	Q9C512	"Mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1"	AT1G51590.1	alpha-mannosidase 1 	LOC_Os04g51690.1	"glycosyl hydrolase family 47 domain contain protein, expressed"	Medtr8g129800.1	"Glycoside hydrolase, family 47 "	NA	"GO:0004571|""mannosyl-oligosaccharide 1,2-alpha-mannosidase activity""||GO:0005509|calcium ion binding"	GO:0016020|membrane
Ptp.2675.1.S1_s_at	A	A1TS	POPTR_0010s14710	POPTR_0010s14710 (11)	scaffold_10:14225836-14225995(+) (11)	NA	Q7VG78	Probable GMP synthase [glutamine-hydrolyzing]	AT1G13635.2	DNA glycosylase superfamily protein 	LOC_Os08g38170.1	"methyladenine glycosylase, putative, expressed"	Medtr8g077310.1	Methyladenine glycosylase 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0008725|DNA-3-methyladenine glycosylase I activity	NA
Ptp.2676.1.S1_at	A	A1TS	POPTR_0016s08890	POPTR_0016s08890 (11)	scaffold_16:6690388-6690462(-) (11)	NA	Q7XLX6	DNA-binding protein S1FA2	AT2G37120.1	S1FA-like DNA-binding protein 	LOC_Os04g33440.2	"DNA-binding protein S1FA, putative, expressed"	Medtr7g121080.1	DNA binding protein S1FA 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.2677.1.S1_at	A	A1TS	POPTR_0002s05020	POPTR_0002s05020 (10)	scaffold_2:3211874-3212236(-) (10)	NA	A2ZMH2	Serine/threonine-protein kinase Nek2	AT3G04810.2	NIMA-related kinase 2 	LOC_Os12g41180.1	"LSTK-1-like kinase, putative, expressed"	Medtr1g083910.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.2678.1.S1_s_at	A	A2TS	POPTR_0012s09510	POPTR_0012s09510 (11)//POPTR_0015s10280 (11)	scaffold_12:10511940-10512475(+) (11)//scaffold_15:11245151-11245768(+) (11)	NA	Q93Y35	Probable 26S proteasome non-ATPase regulatory subunit 6	AT4G24820.2	"26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain "	LOC_Os04g40850.1	"26S proteasome non-ATPase regulatory subunit 6, putative, expressed"	Medtr8g109840.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2679.1.S1_at	A	A1TS	POPTR_0010s09350	POPTR_0010s09350 (11)	scaffold_10:10206991-10207347(-) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2679.1.S1_s_at	A	A1TS	POPTR_0010s09350	POPTR_0010s09350 (11)	scaffold_10:10207181-10207421(-) (11)	NA	A1Z9E2	Protein lin-54 homolog	AT4G14770.1	TESMIN/TSO1-like CXC 2 	LOC_Os07g07974.1	"tesmin/TSO1-like CXC domain containing protein, expressed"	Medtr5g006670.1	"Calcium-binding EF-hand; Tesmin/TSO1-like, CXC "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2681.1.S1_s_at	A	A1TS	POPTR_0010s15720	POPTR_0010s15720 (11)	scaffold_10:14850124-14850594(+) (11)	NA	Q9LSN7	Transcription factor bHLH147	AT3G17100.2	sequence-specific DNA binding transcription factors 	LOC_Os03g19780.1	expressed protein	Medtr8g137080.1	transcription factor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2683.1.S1_a_at	A	A1TS	POPTR_0013s13680	POPTR_0013s13680 (9)	scaffold_13:14102077-14102319(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2686.1.S1_s_at	A	A1TS	POPTR_0004s03410	POPTR_0004s03410 (11)	scaffold_4:2347738-2348162(-) (11)	POPTR_0011s04220 (6)	P40215	"External NADH-ubiquinone oxidoreductase 1, mitochondrial"	AT4G05020.1	NAD(P)H dehydrogenase B2 	LOC_Os06g47000.2	"external NADH-ubiquinone oxidoreductase 1, mitochondrial precursor, putative, expressed"	Medtr4g124980.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand 	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.2687.1.S1_at	A	A1TS	POPTR_0001s17500	POPTR_0001s17500 (9)	scaffold_1:14291526-14291879(+) (9)	NA	Q99685	Monoglyceride lipase	AT1G52760.1	lysophospholipase 2 	LOC_Os02g11720.1	"lipase, putative, expressed"	Medtr8g129890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2689.1.S1_at	A	A1MS	POPTR_0001s25210	POPTR_0001s25210 (9)	scaffold_1:24398450-24398963(-) (9)	NA	Q55D54	Putative C-4 methylsterol oxidase DDB_G0269788	AT1G07420.1	sterol 4-alpha-methyl-oxidase 2-1 	LOC_Os07g01150.3	"fatty acid hydroxylase, putative, expressed"	Medtr5g036470.1	Sterol desaturase 	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity||GO:0005506|iron ion binding	GO:0005783|endoplasmic reticulum
Ptp.2693.1.A1_at	A	A1TS	POPTR_0005s06390	POPTR_0005s06390 (9)	scaffold_5:4260015-4260563(+) (9)	NA	Q766C2	Aspartic proteinase nepenthesin-2	AT3G20015.1	Eukaryotic aspartyl protease family protein 	LOC_Os04g58070.1	"aspartic proteinase nepenthesin precursor, putative, expressed"	Medtr1g046810.1	"Peptidase A1, pepsin "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2694.2.S1_s_at	A	A1TS	POPTR_0010s18300	POPTR_0010s18300 (11)	scaffold_10:16595565-16596206(-) (11)	NA	Q0VCZ3	YTH domain family protein 2	AT1G79270.1	evolutionarily conserved C-terminal region 8 	LOC_Os01g48790.1	"YT521-B-like family domain containing protein, expressed"	Medtr2g085380.1	YT521-B-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2696.1.S1_at	A	A1TS	POPTR_0010s08380	POPTR_0010s08380 (9)	scaffold_10:9318413-9318554(-) (9)	NA	Q8H1S4	1-aminocyclopropane-1-carboxylate oxidase homolog 4	AT1G06650.2	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g48430.1	"1-aminocyclopropane-1-carboxylate oxidase homolog 4, putative, expressed"	Medtr8g044650.1	"H+-transporting two-sector ATPase, alpha/beta subunit, central region; 2OG-Fe(II) oxygenase "	NA	GO:0016491|oxidoreductase activity	NA
Ptp.2699.1.A1_s_at	A	A1TS	POPTR_0006s06180	POPTR_0006s06180 (11)	scaffold_6:4392880-4393071(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.2700.1.S1_at	A	A1TS	POPTR_0019s08570	POPTR_0019s08570 (11)	scaffold_19:10077903-10078038(-) (11)	NA	O22874	Expansin-A8	AT2G40610.1	expansin A8 	LOC_Os01g60770.1	"expansin precursor, putative, expressed"	Medtr5g083140.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2701.1.S1_at	A	A1TS	POPTR_0010s19850	POPTR_0010s19850 (11)	scaffold_10:17641541-17642207(-) (11)	NA	Q9FFK1	Syntaxin-31	AT5G05760.1	syntaxin of plants 31 	LOC_Os01g08400.1	"syntaxin, putative, expressed"	Medtr5g101030.1	Syntaxin/epimorphin family 	NA	NA	GO:0016020|membrane
Ptp.2702.1.A1_x_at	A	A1TS	POPTR_0017s00400	POPTR_0017s00400 (11)	scaffold_17:125718-126160(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2703.2.S1_at	A	A1MS	POPTR_0002s13940	POPTR_0002s13940 (11)	scaffold_2:10339931-10340407(+) (11)	NA	O23676	Protein mago nashi homolog	AT1G02140.1	mago nashi family protein 	LOC_Os12g18880.1	"mago nashi, putative, expressed"	Medtr3g163680.1	Mago nashi protein 	NA	NA	GO:0005634|nucleus
Ptp.2706.1.S1_s_at	A	A1TS	POPTR_0015s14780	POPTR_0015s14780 (11)	scaffold_15:14254327-14254884(-) (11)	NA	Q8VXX5	Monocopper oxidase-like protein SKS1	AT4G25240.1	SKU5 similar 1 	LOC_Os06g01490.1	"monocopper oxidase, putative, expressed"	Medtr3g010000.1	"Multicopper oxidase, type 1 "	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.2708.1.S1_at	A	A1TS	POPTR_0008s09390	POPTR_0008s09390 (10)	scaffold_8:5817540-5818044(+) (10)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT3G29360.2	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25700.3	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr5g046790.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.2709.1.A1_at	A	A1TS	POPTR_0002s19110	POPTR_0002s19110 (9)	scaffold_2:15036354-15036767(+) (9)	NA	P43288	Shaggy-related protein kinase alpha	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr7g133540.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.271.1.A1_at	A	A1TS	POPTR_0003s05060	POPTR_0003s05060 (11)	scaffold_3:6249431-6249878(-) (11)	NA	Q0WVL7	Golgin candidate 5	AT1G79830.3	golgin candidate 5 	LOC_Os05g48620.1	"tRNA-binding arm, putative, expressed"	Medtr2g122720.1	"tRNA-binding arm; t-snare, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2711.1.S1_at	A	A1TS	POPTR_0004s24400	POPTR_0004s24400 (11)	scaffold_4:23079556-23079998(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
Ptp.2711.2.S1_a_at	A	A1TS	POPTR_0003s03960	POPTR_0003s03960 (11)	scaffold_3:4554091-4554857(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
Ptp.2711.2.S1_s_at	A	A1TS	POPTR_0003s03960	POPTR_0003s03960 (11)	scaffold_3:4554014-4554417(-) (11)	NA	Q8LPJ4	ABC transporter E family member 2	AT4G19210.1	RNAse l inhibitor protein 2 	LOC_Os11g34350.1	"ATP-binding cassette sub-family E member 1, putative, expressed"	Medtr1g143450.1	"4Fe-4S ferredoxin, iron-sulfur binding; AAA ATPase; Possible metal-binding region in RNase L inhibitor, RLI "	NA	GO:0051536|iron-sulfur cluster binding||GO:0016887|ATPase activity||GO:0009055|electron carrier activity||GO:0005524|ATP binding	NA
Ptp.2714.1.S1_at	A	A1TS	POPTR_0010s26100	POPTR_0010s26100 (9)	scaffold_10:21454560-21455118(+) (9)	NA	Q9M1H3	ABC transporter F family member 4	AT3G54540.1	general control non-repressible 4 	LOC_Os03g32630.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr8g089230.1	AAA ATPase 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.2716.1.S1_at	A	A1TS	POPTR_0015s09000	POPTR_0015s09000 (11)	scaffold_15:10329980-10330944(-) (11)	NA	Q8L8T2	Glutaredoxin-C1	AT5G63030.1	Thioredoxin superfamily protein 	LOC_Os02g40500.1	"OsGrx_C2.1 - glutaredoxin subgroup I, expressed"	Medtr3g114230.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.2717.1.S1_a_at	A	A1TS	POPTR_0017s12290	POPTR_0017s12290 (10)	scaffold_17:12509884-12510030(-) (10)	NA	Q9FKA5	Uncharacterized protein At5g39570	AT5G39570.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os06g12580.1	"pro-resilin precursor, putative, expressed"	Medtr6g013300.1	"Stress protein DDR48, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2717.2.S1_s_at	A	A1TS	POPTR_0008s13200	POPTR_0008s13200 (11)	scaffold_8:8651871-8652306(+) (11)	NA	Q9CAC1	Endoglucanase 8	AT1G70710.1	glycosyl hydrolase 9B1 	LOC_Os06g14540.1	"endoglucanase, putative, expressed"	Medtr4g157670.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2718.1.A1_s_at	A	A1TS	POPTR_0016s05450	POPTR_0016s05450 (11)	scaffold_16:3377813-3378648(-) (11)	NA	Q64520	Guanylate kinase	AT3G57550.2	guanylate kinase 	LOC_Os12g33100.1	"guanylate kinase, putative, expressed"	Medtr7g110630.2	Guanylate kinase/L-type calcium channel region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2719.1.S1_at	A	A1TS	POPTR_0010s13190	POPTR_0010s13190 (10)	scaffold_10:13069617-13070050(+) (10)	POPTR_0008s12230 (8)	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
Ptp.2719.2.A1_at	A	A1TS	POPTR_0010s13190	POPTR_0010s13190 (10)	scaffold_10:13070889-13075134(+) (10)	NA	Q96PM5	RING finger and CHY zinc finger domain-containing protein 1	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
Ptp.272.2.A1_a_at	A	A1TS	POPTR_0001s35450	POPTR_0001s35450 (11)	scaffold_1:33787963-33788166(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G14500.1	aldose 1-epimerase family protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.2724.1.S1_s_at	A	A1TS	POPTR_0034s00210	POPTR_0034s00210 (11)	scaffold_34:105790-106937(+) (11)	NA	NA	NA	AT3G21400.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os12g35550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2727.1.S1_s_at	A	A1TS	POPTR_0009s08000	POPTR_0009s08000 (11)	scaffold_9:7421363-7423141(-) (11)	POPTR_0001s28790 (6)	P13284	Gamma-interferon-inducible lysosomal thiol reductase	AT1G07080.1	Thioredoxin superfamily protein 	LOC_Os03g18454.1	"gamma-interferon-inducible lysosomal thiol reductase precursor, putative, expressed"	Medtr3g034410.1	"Gamma-interferon-inducible lysosomal thiol reductase precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2730.1.S1_s_at	A	A1TS	POPTR_0019s08290	POPTR_0019s08290 (11)	scaffold_19:9771347-9771387(-) (11)	NA	O04153	Calreticulin-3	AT1G08450.1	calreticulin 3 	LOC_Os05g43170.1	"calreticulin precursor protein, putative, expressed"	Medtr7g089980.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.274.1.S1_at	A	A1TS	POPTR_0016s08770	POPTR_0016s08770 (11)	scaffold_16:6565799-6566593(-) (11)	NA	Q9Z137	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 2	AT2G37090.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os03g17850.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr7g120990.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
Ptp.2741.1.S1_s_at	A	A2TS	POPTR_0002s07890	POPTR_0002s07890 (11)//POPTR_0005s20510 (11)	scaffold_2:5417177-5418003(-) (11)//scaffold_5:19564407-19565219(+) (11)	NA	Q9C5W3	"NAD kinase 2, chloroplastic"	AT1G21640.1	NAD kinase 2 	LOC_Os11g08670.1	"NAD kinase, putative, expressed"	Medtr4g104490.1	ATP-NAD/AcoX kinase 	GO:0008152|metabolic process	GO:0003951|NAD+ kinase activity	NA
Ptp.2748.1.A1_s_at	A	A1TS	POPTR_0002s11230	POPTR_0002s11230 (11)	scaffold_2:8299166-8299372(+) (11)	NA	Q9SGP2	Receptor-like protein kinase HSL1	AT5G49660.1	Leucine-rich repeat transmembrane protein kinase family protein 	LOC_Os12g43660.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.275.2.S1_s_at	A	A1TS	POPTR_0001s34410	POPTR_0001s34410 (11)	scaffold_1:32561527-32561820(+) (11)	NA	NA	NA	AT1G29395.1	COLD REGULATED 314 INNER MEMBRANE 1 	LOC_Os05g49170.1	"cold acclimation protein WCOR413, putative, expressed"	Medtr4g136630.1	Cold acclimation WCOR413 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2750.1.S1_s_at	A	A1TS	POPTR_0007s13260	POPTR_0007s13260 (11)	scaffold_7:13379182-13379350(-) (11)	NA	Q9AR07	Jasmonate O-methyltransferase	AT1G19640.1	jasmonic acid carboxyl methyltransferase 	LOC_Os11g15130.1	"jasmonate O-methyltransferase, putative, expressed"	Medtr5g020860.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.2751.1.S1_at	A	A1TS	POPTR_0003s10790	POPTR_0003s10790 (9)	scaffold_3:11675857-11677443(-) (9)	NA	Q9C5Y4	Structural maintenance of chromosomes protein 2-1	AT5G62410.1	structural maintenance of chromosomes 2 	LOC_Os01g67740.1	"chromosome segregation protein, putative, expressed"	Medtr8g087350.1	Prefoldin; SMCs flexible hinge 	GO:0051276|chromosome organization	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane||GO:0005694|chromosome
Ptp.2753.1.S1_at	A	A1TS	POPTR_0004s05550	POPTR_0004s05550 (9)	scaffold_4:4299077-4299666(+) (9)	NA	Q9UNI6	Dual specificity protein phosphatase 12	AT4G18593.1	dual specificity protein phosphatase-related 	LOC_Os02g15270.1	"tyrosine-protein phosphatase YVH1, putative, expressed"	Medtr7g106530.1	Dual specificity protein phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2754.1.A1_a_at	A	A1TS	POPTR_0008s11610	POPTR_0008s11610 (11)	scaffold_8:7404022-7405753(+) (11)	NA	Q9FV52	"Methionine aminopeptidase 1B, chloroplastic"	AT1G13270.1	methionine aminopeptidase 1B 	LOC_Os04g52100.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g069010.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.2754.1.A1_at	A	A1TS	POPTR_0008s11610	POPTR_0008s11610 (10)	scaffold_8:7403656-7406564(+) (10)	NA	Q9FV52	"Methionine aminopeptidase 1B, chloroplastic"	AT1G13270.1	methionine aminopeptidase 1B 	LOC_Os04g52100.1	"peptidase, M24 family protein, putative, expressed"	Medtr5g069010.1	"Peptidase M24, methionine aminopeptidase "	GO:0009987|cellular process	NA	NA
Ptp.2758.2.S1_at	A	A2TA	POPTR_0012s02460	POPTR_0012s02460 (10)//POPTR_0015s01270 (9)	scaffold_12:2025602-2025847(+) (10)//scaffold_15:801550-801784(-) (9)	NA	P70168	Importin subunit beta-1	AT5G53480.1	ARM repeat superfamily protein 	LOC_Os12g38110.1	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
Ptp.2759.1.S1_at	A	A1TS	POPTR_0002s25120	POPTR_0002s25120 (11)	scaffold_2:22309861-22310115(-) (11)	NA	Q9SW95	"Asparaginyl-tRNA synthetase, cytoplasmic 2"	AT3G07420.1	asparaginyl-tRNA synthetase 2 	LOC_Os01g27520.1	"tRNA synthetases class II domain containing protein, expressed"	Medtr8g011980.1	"tRNA synthetase, class II (D, K and N) "	GO:0034641|cellular nitrogen compound metabolic process||GO:0034645|cellular macromolecule biosynthetic process||GO:0006418|tRNA aminoacylation for protein translation||GO:0044281|small molecule metabolic process	GO:0004812|aminoacyl-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.2765.2.S1_s_at	A	A1TS	POPTR_0012s01730	POPTR_0012s01730 (11)	scaffold_12:1302811-1302903(-) (11)	NA	Q94BN2	Spermine synthase	AT5G53120.5	spermidine synthase 3 	LOC_Os02g15550.2	"spermidine synthase, putative, expressed"	Medtr3g124370.1	Spermine synthase 	NA	GO:0003824|catalytic activity	NA
Ptp.2766.1.S1_s_at	A	A1TS	POPTR_0001s46400	POPTR_0001s46400 (10)	scaffold_1:46791689-46792084(-) (11)	NA	Q9SA77	UDP-arabinose 4-epimerase 1	AT1G30620.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g04690.2	"UDP-arabinose 4-epimerase 1, putative, expressed"	Medtr4g137730.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.2769.1.S1_a_at	A	A1TS	POPTR_0001s01810	POPTR_0001s01810 (11)	scaffold_1:1317113-1317367(+) (11)	NA	Q8VZC9	Vacuolar protein sorting-associated protein 25	AT4G19003.1	E2F/DP family winged-helix DNA-binding domain 	LOC_Os01g46932.1	"vacuolar protein-sorting-associated protein 25, putative, expressed"	Medtr5g028140.1	"ESCRT-II complex, vps25 subunit "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2774.1.S1_at	A	A1TS	POPTR_0003s21780	POPTR_0003s21780 (11)	scaffold_3:19813314-19813856(-) (11)	NA	Q7F8R0	Zinc finger CCCH domain-containing protein 14	AT3G12130.1	KH domain-containing protein / zinc finger (CCCH type) family protein 	LOC_Os02g10080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g111840.1	"Zinc finger, CCCH-type; KH, type 1 "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
Ptp.2780.1.S1_at	A	A1TS	POPTR_0008s17950	POPTR_0008s17950 (11)	scaffold_8:12047040-12047079(+) (11)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2780.1.S1_s_at	A	A1TS	POPTR_0008s17950	POPTR_0008s17950 (11)	scaffold_8:12047362-12047731(+) (11)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2780.2.S1_a_at	A	A1TS	POPTR_0008s17950	POPTR_0008s17950 (9)	scaffold_8:12046814-12046846(+) (9)	NA	NA	NA	AT3G48140.1	B12D protein 	LOC_Os07g17330.1	"B12D protein, putative, expressed"	Medtr3g103230.1	B12D 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2781.1.S1_a_at	A	A1TS	POPTR_0001s34670	POPTR_0001s34670 (11)	scaffold_1:32939897-32940440(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2781.2.S1_at	A	A1MS	POPTR_0001s34690	POPTR_0001s34690 (11)	scaffold_1:32942895-32943035(-) (11)	NA	Q9SJ89	"Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic"	AT2G04700.1	ferredoxin thioredoxin reductase catalytic beta chain family protein 	LOC_Os09g07570.1	"ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed"	Medtr6g008880.1	"Ferredoxin thioredoxin reductase, beta chain "	GO:0055114|oxidation reduction	GO:0008937|ferredoxin reductase activity	NA
Ptp.2781.3.A1_a_at	A	A1MS	POPTR_0001s34690	POPTR_0001s34690 (11)	scaffold_1:32943081-32943181(-) (11)	NA	Q9SJ89	"Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic"	AT2G04700.1	ferredoxin thioredoxin reductase catalytic beta chain family protein 	LOC_Os09g07570.1	"ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed"	Medtr6g008880.1	"Ferredoxin thioredoxin reductase, beta chain "	GO:0055114|oxidation reduction	GO:0008937|ferredoxin reductase activity	NA
Ptp.2783.1.A1_at	A	A1TS	POPTR_0008s19150	POPTR_0008s19150 (10)	scaffold_8:13124426-13124901(-) (10)	NA	NA	NA	AT5G40460.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr5g034560.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2784.1.A1_s_at	A	A1TS	POPTR_0005s20170	POPTR_0005s20170 (11)	scaffold_5:19231637-19231902(+) (11)	NA	Q9SCJ9	Ubiquitin carboxyl-terminal hydrolase 26	AT3G49600.1	ubiquitin-specific protease 26 	LOC_Os03g09260.1	"ubiquitin carboxyl-terminal hydrolase 26, putative, expressed"	Medtr3g133630.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.2785.1.S1_at	A	A1TS	POPTR_0003s21660	POPTR_0003s21660 (9)	scaffold_3:19731722-19731878(+) (9)	NA	Q42517	Peroxidase N	AT5G19890.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr2g046610.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2786.1.S1_at	A	A1TS	POPTR_0011s12070	POPTR_0011s12070 (11)	scaffold_11:14850746-14851051(-) (11)	NA	P46032	Peptide transporter PTR2	AT2G02040.1	peptide transporter 2 	LOC_Os03g51050.1	"peptide transporter PTR2, putative, expressed"	Medtr4g012490.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2787.1.S1_s_at	A	A1TS	POPTR_0010s06730	POPTR_0010s06730 (11)	scaffold_10:8012183-8014294(-) (11)	NA	A2A4P0	ATP-dependent RNA helicase DHX8	AT1G27900.1	RNA helicase family protein 	LOC_Os11g20554.1	"ATP-dependent RNA helicase, putative, expressed"	Medtr6g067330.1	"Helicase, C-terminal; "	NA	GO:0003676|nucleic acid binding||GO:0004386|helicase activity||GO:0005524|ATP binding	NA
Ptp.2791.1.S1_s_at	A	A1TS	POPTR_0001s38070	POPTR_0001s38070 (11)	scaffold_1:37105448-37105789(+) (11)	NA	NA	NA	AT4G21740.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30515.1); Has 20 Blast hits to 20 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr4g136820.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2794.1.S1_s_at	A	A1TS	POPTR_0008s13040	POPTR_0008s13040 (11)	scaffold_8:8497469-8498336(-) (11)	NA	Q9ZVF3	MLP-like protein 328	AT1G14930.1	Polyketide cyclase/dehydrase and lipid transport superfamily protein 	LOC_Os04g39150.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr1g034930.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.2796.1.S1_at	A	A1TS	POPTR_0019s09210	POPTR_0019s09210 (10)	scaffold_19:10781117-10781570(-) (10)	NA	Q9C502	Putative clathrin assembly protein At1g33340	AT1G33340.1	ENTH/ANTH/VHS superfamily protein 	LOC_Os11g14000.1	"ANTH domain containing protein, expressed"	Medtr6g070790.1	ENTH/VHS; ANTH 	NA	GO:0005543|phospholipid binding	NA
Ptp.2798.1.S1_at	A	A1TS	POPTR_0011s16560	POPTR_0011s16560 (11)	scaffold_11:18412055-18412283(+) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT5G44440.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC235662_1.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC235662.1 1345-3216 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.280.1.A1_at	A	A1TS	POPTR_0002s08240	POPTR_0002s08240 (11)	scaffold_2:5722267-5723329(+) (11)	NA	Q42592	"L-ascorbate peroxidase S, chloroplastic/mitochondrial"	AT4G08390.2	stromal ascorbate peroxidase 	LOC_Os12g07820.1	"OsAPx6 - Stromal Ascorbate Peroxidase encoding gene 5,8, expressed"	Medtr3g100720.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.2801.1.A1_at	A	A1TS	POPTR_0001s16590	POPTR_0001s16590 (11)	scaffold_1:13354449-13355933(+) (11)	NA	Q94AU2	25.3 kDa vesicle transport protein	AT1G11890.1	Synaptobrevin family protein 	LOC_Os06g09850.1	"25.3 kDa vesicle transport protein, putative, expressed"	Medtr8g025760.1	Synaptobrevin 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.2803.1.A1_at	A	A1TS	POPTR_0002s03340	POPTR_0002s03340 (11)	scaffold_2:2057645-2058149(-) (11)	NA	Q40517	Mitogen-activated protein kinase homolog NTF3	AT1G10210.2	mitogen-activated protein kinase 1 	LOC_Os06g48590.2	"CGMC_MAPKCMGC_2_SLT2y_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr4g134400.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2806.1.S1_s_at	A	A1TS	POPTR_0005s04040	POPTR_0005s04040 (11)	scaffold_5:2685366-2685498(-) (11)	NA	O23732	"Glutathione synthetase, chloroplastic"	AT5G27380.1	glutathione synthetase 2 	LOC_Os11g42350.3	"glutathione synthetase, chloroplast precursor, putative, expressed"	Medtr7g139670.1	"Eukaryotic glutathione synthase; Eukaryotic glutathione synthase, ATP-binding; "	GO:0044283|small molecule biosynthetic process||GO:0006750|glutathione biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004363|glutathione synthase activity||GO:0005524|ATP binding	NA
Ptp.2809.1.A1_s_at	A	A1TS	POPTR_0004s19400	POPTR_0004s19400 (11)	scaffold_4:19253183-19253630(+) (11)	NA	Q4V8J4	Glycerol-3-phosphate acyltransferase 3	AT5G60620.1	glycerol-3-phosphate acyltransferase 9 	LOC_Os07g34730.1	"acyltransferase, putative, expressed"	Medtr8g129160.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.2810.1.S1_s_at	A	A1TS	POPTR_0003s06590	POPTR_0003s06590 (11)	scaffold_3:8101132-8101375(-) (11)	NA	Q9Y4D2	Sn1-specific diacylglycerol lipase alpha	AT3G14075.2	"Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 "	LOC_Os02g54010.1	"lipase class 3 family protein, putative, expressed"	Medtr8g025380.1	"lipase class 3 family protein, related "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.2817.1.S1_a_at	A	A1TS	POPTR_0006s22650	POPTR_0006s22650 (11)	scaffold_6:21592202-21593459(+) (11)	NA	NA	NA	AT2G36145.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os01g64270.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2818.1.S1_at	A	A1TS	POPTR_0010s25420	POPTR_0010s25420 (10)	scaffold_10:21109866-21110307(-) (10)	NA	O94901	SUN domain-containing protein 1	AT5G04990.1	SAD1/UNC-84 domain protein 1 	LOC_Os01g16220.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr8g047470.1	"Sad1/UNC-like, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2819.1.S1_s_at	A	A3TS	POPTR_0004s24010	POPTR_0004s24020 (11)//POPTR_0018s00260 (11)//POPTR_0004s24010 (11)	scaffold_18:72986-73224(-) (11)//scaffold_4:22655452-22655690(-) (11)//scaffold_4:22682229-22682467(-) (11)	NA	Q9LT96	Probable leucine-rich repeat receptor-like protein kinase At5g49770	AT5G49760.1	Leucine-rich repeat protein kinase family protein 	LOC_Os12g10740.1	"leucine-rich repeat family protein, putative, expressed"	Medtr2g018430.2	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2823.1.S1_s_at	A	A1TS	POPTR_0015s11660	POPTR_0015s11660 (11)	scaffold_15:12210604-12211179(-) (11)	NA	Q94JM3	Auxin response factor 2	AT5G62000.3	auxin response factor 2 	LOC_Os12g29520.4	"auxin response factor, putative, expressed"	Medtr4g152210.1	AUX/IAA protein; Transcriptional factor B3; Auxin response factor 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0009725|response to hormone stimulus||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.2825.1.S1_s_at	A	A1TS	POPTR_0014s06570	POPTR_0014s06570 (11)	scaffold_14:4994764-4995296(+) (11)	NA	NA	NA	AT3G60850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). 	LOC_Os03g14290.1	expressed protein	AC233684_2.1	hypothetical protein AC233684.2 2311-2939 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2828.1.A1_at	A	A1TS	POPTR_0006s11430	POPTR_0006s11430 (11)	scaffold_6:8663696-8664213(+) (11)	NA	Q9FM85	Probable receptor-like protein kinase At5g56460	AT5G01020.1	Protein kinase superfamily protein 	LOC_Os12g02810.1	"protein kinase domain containing protein, expressed"	Medtr7g081040.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.283.1.A1_at	A	A1TS	POPTR_0004s09660	POPTR_0004s09660 (10)	scaffold_4:8176068-8176574(+) (10)	NA	Q6DEY3	Abhydrolase domain-containing protein FAM108B1	AT5G38220.3	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g49510.1	"OsPOP3 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr7g032300.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2830.1.A1_at	A	A1TS	POPTR_0001s13180	POPTR_0001s13180 (11)	scaffold_1:10251301-10251462(-) (11)	NA	Q8LL04	RNA polymerase II C-terminal domain phosphatase-like 3	AT2G33540.1	C-terminal domain phosphatase-like 3 	LOC_Os11g31890.1	"NLI interacting factor-like phosphatase, putative, expressed"	Medtr7g020970.1	BRCT; NLI interacting factor 	NA	NA	GO:0005622|intracellular
Ptp.2832.1.A1_at	A	A1TS	POPTR_0016s13940	POPTR_0016s13940 (9)	scaffold_16:13170080-13170560(+) (9)	NA	Q68FJ8	TOM1-like protein 2	AT2G38410.1	ENTH/VHS/GAT family protein 	LOC_Os05g39760.1	"VHS and GAT domain containing protein, expressed"	Medtr7g077730.1	GAT; ENTH/VHS 	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
Ptp.2834.1.S1_s_at	A	A1TS	POPTR_0010s21140	POPTR_0010s21140 (11)	scaffold_10:18547585-18547784(+) (11)	NA	NA	NA	AT3G55420.1	unknown protein; Has 21 Blast hits to 21 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g38470.2	expressed protein	Medtr7g027080.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2835.1.S1_at	A	A1MS	POPTR_0018s12700	POPTR_0018s12700 (9)	scaffold_18:13216994-13217543(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2836.1.S1_at	A	A1TS	POPTR_0009s08970	POPTR_0009s08970 (10)	scaffold_9:8060962-8061424(+) (10)	NA	NA	NA	AT1G49975.1	"INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	NA	NA	Medtr3g010060.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2838.1.S1_at	A	A1TS	POPTR_0002s11290	POPTR_0002s11290 (11)	scaffold_2:8346394-8346703(-) (11)	NA	P58223	KH domain-containing protein At4g18375	AT1G51580.1	RNA-binding KH domain-containing protein 	LOC_Os01g13470.1	"KH domain containing protein, putative, expressed"	Medtr3g127960.1	"KH, type 1 "	NA	GO:0003723|RNA binding	NA
Ptp.2839.1.S1_at	A	A1MS	POPTR_0012s10840	POPTR_0012s10840 (9)	scaffold_12:11539879-11540369(+) (9)	NA	Q55467	Magnesium-protoporphyrin O-methyltransferase	AT4G25080.5	magnesium-protoporphyrin IX methyltransferase 	LOC_Os06g04150.1	"magnesium-protoporphyrin O-methyltransferase, putative, expressed"	Medtr4g152280.1	Magnesium protoporphyrin O-methyltransferase 	GO:0015979|photosynthesis||GO:0015995|chlorophyll biosynthetic process	GO:0046406|magnesium protoporphyrin IX methyltransferase activity	NA
Ptp.284.1.A1_at	A	A1TS	POPTR_0008s20480	POPTR_0008s20480 (11)	scaffold_8:14249921-14250230(+) (11)	NA	P54567	Uncharacterized protein yqkD	AT4G14290.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os03g24450.1	"OsPOP8 - Putative Prolyl Oligopeptidase homologue, expressed"	Medtr2g026400.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2840.1.S1_s_at	A	A1TS	POPTR_0014s16740	POPTR_0014s16740 (11)	scaffold_14:12824110-12825990(-) (11)	POPTR_0014s16770 (6)	NA	NA	AT2G04340.1	unknown protein; Has 24 Blast hits to 24 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g30140.1	expressed protein	Medtr4g114840.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2843.1.S1_at	A	A1TS	POPTR_0014s08540	POPTR_0014s08540 (9)	scaffold_14:6344040-6344320(-) (9)	NA	NA	NA	AT1G01500.1	Erythronate-4-phosphate dehydrogenase family protein 	LOC_Os03g56420.1	expressed protein	Medtr4g095550.2	"Contains similarity to a dehydrogenase from, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2845.1.S1_at	A	A1TA	POPTR_0014s01910	POPTR_0014s01910 (9)	scaffold_14:1735511-1735983(-) (9)	NA	O65351	Subtilisin-like protease	AT5G67360.1	Subtilase family protein 	LOC_Os03g40830.1	"OsSub30 - Putative Subtilisin homologue, expressed"	Medtr1g023550.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.2847.1.A1_at	A	A1TS	POPTR_0001s35680	POPTR_0001s35680 (11)	scaffold_1:34032294-34032824(+) (11)	NA	O48963	Phototropin-1	AT3G45780.2	phototropin 1 	LOC_Os12g01140.1	"AGC_PVPK_like_kin82y.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr4g079760.1	"PAS; PAS-associated, C-terminal; Tyrosine protein kinase; "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006468|protein amino acid phosphorylation||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2850.1.S1_at	A	A1TS	POPTR_0004s01410	POPTR_0004s01410 (9)	scaffold_4:787788-789144(-) (9)	NA	Q43846	"Soluble starch synthase 3, chloroplastic/amyloplastic"	AT1G11720.2	starch synthase 3 	LOC_Os04g53310.1	"soluble starch synthase 3, chloroplast precursor, putative, expressed"	Medtr6g012910.1	"Glycosyl transferase, group 1 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2854.1.A1_at	A	A1TS	POPTR_0012s07620	POPTR_0012s07620 (11)	scaffold_12:8537386-8537874(+) (11)	NA	P34909	General negative regulator of transcription subunit 4	AT5G62910.1	RING/U-box superfamily protein 	LOC_Os02g37030.1	"protein binding protein, putative, expressed"	Medtr6g009590.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2855.1.A1_at	A	A1MS	POPTR_0001s17790	POPTR_0001s17790 (9)	scaffold_1:14662608-14662693(-) (9)	NA	Q9SQI3	"Myristoyl-acyl carrier protein thioesterase, chloroplastic"	AT1G08510.1	fatty acyl-ACP thioesterases B 	LOC_Os11g43820.1	"myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed"	Medtr8g118600.1	Acyl-ACP thioesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2857.1.S1_s_at	A	A1TS	POPTR_0013s11030	POPTR_0013s11030 (11)	scaffold_13:11702443-11703931(+) (11)	NA	NA	NA	AT1G35340.1	ATP-dependent protease La (LON) domain protein 	LOC_Os11g11210.1	"OsClp12 - Putative Clp protease homologue, expressed"	NA	NA	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004176|ATP-dependent peptidase activity	NA
Ptp.2859.1.A1_s_at	A	A1TS	POPTR_0004s05670	POPTR_0004s05670 (11)	scaffold_4:4432213-4432260(-) (11)	NA	Q96SZ5	2-aminoethanethiol dioxygenase	AT3G58670.3	Protein of unknown function (DUF1637) 	LOC_Os04g06790.2	"2-aminoethanethiol dioxygenase, putative, expressed"	Medtr7g009090.1	Protein of unknown function DUF1637 	GO:0055114|oxidation reduction	GO:0047800|cysteamine dioxygenase activity	NA
Ptp.286.1.A1_at	A	A1TS	POPTR_0009s03960	POPTR_0009s03960 (9)	scaffold_9:4531888-4533260(-) (9)	NA	Q9M2S6	E3 ubiquitin-protein ligase SDIR1	AT3G55530.1	RING/U-box superfamily protein 	LOC_Os03g16570.2	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g084210.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2864.1.S1_s_at	A	A1TS	POPTR_0013s13000	POPTR_0013s13000 (11)	scaffold_13:13585332-13585604(-) (11)	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2864.2.S1_at	A	A1MS	POPTR_0013s13000	POPTR_0013s13000 (11)	scaffold_13:13580526-13580722(-) (11)	NA	Q4QRJ7	Eukaryotic translation initiation factor 2A	AT1G73180.1	Eukaryotic translation initiation factor eIF2A family protein 	LOC_Os02g39350.1	"eukaryotic translation initiation factor 2A, putative, expressed"	Medtr4g128590.1	Fumarate lyase; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2866.1.S1_at	A	A1MS	POPTR_0006s09310	POPTR_0006s09310 (10)	scaffold_6:6837121-6837413(-) (10)	NA	P0CI03	Putative peptide/nitrate transporter At2g37900	AT2G37900.1	Major facilitator superfamily protein 	LOC_Os03g60850.1	"peptide transporter PTR2, putative, expressed"	Medtr7g070830.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.2869.1.A1_at	A	A1TS	POPTR_0001s46570	POPTR_0001s46570 (11)	scaffold_1:46941370-46941820(+) (11)	NA	Q94C59	Patellin-4	AT1G30690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os06g45990.2	"patellin-5, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.287.1.A1_s_at	A	A1TS	POPTR_0001s17370	POPTR_0001s17370 (11)	scaffold_1:14173027-14173414(-) (11)	NA	P00428	"Cytochrome c oxidase subunit 5B, mitochondrial"	AT1G80230.1	Rubredoxin-like superfamily protein 	LOC_Os06g05080.1	"cytochrome c oxidase subunit 5B, mitochondrial precursor, putative, expressed"	Medtr2g125770.1	"Cytochrome c oxidase, subunit Vb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005740|mitochondrial envelope
Ptp.2875.1.S1_at	A	A1TS	POPTR_0004s10790	POPTR_0004s10790 (9)	scaffold_4:9334252-9334800(+) (9)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT5G16000.1	NSP-interacting kinase 1 	LOC_Os06g16330.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.2876.1.A1_at	A	A1TA	POPTR_0013s11910	POPTR_0013s11910 (10)	scaffold_13:12535269-12535578(+) (10)	NA	NA	NA	AT1G34355.1	forkhead-associated (FHA) domain-containing protein  	LOC_Os11g07050.1	"FHA domain containing protein, putative, expressed"	Medtr1g122320.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.288.1.A1_s_at	A	A1TS	POPTR_0003s14360	POPTR_0003s14360 (9)	scaffold_3:14450888-14451426(+) (9)	NA	Q03685	Luminal-binding protein 5	AT5G42020.1	Heat shock protein 70 (Hsp 70) family protein 	LOC_Os02g02410.1	"DnaK family protein, putative, expressed"	Medtr7g118170.1	Heat shock protein Hsp70 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2885.1.S1_s_at	A	A2TS	POPTR_0013s07710	POPTR_0019s07170 (11)//POPTR_0013s07710 (11)	scaffold_13:6558762-6558952(+) (11)//scaffold_19:7915076-7915293(+) (11)	NA	Q5U2W5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
Ptp.2885.2.A1_at	A	A1TS	POPTR_0013s07710	POPTR_0013s07710 (11)	scaffold_13:6558945-6559114(+) (11)	NA	Q5U2W5	Transducin beta-like protein 3	AT5G16750.1	Transducin family protein / WD-40 repeat family protein 	LOC_Os04g50660.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g138220.1	Lissencephaly type-1-like homology motif; WD40 associated region in TFIID subunit; WD40-like; 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	GO:0032040|small-subunit processome
Ptp.2888.1.S1_at	A	A1TS	POPTR_0001s24390	POPTR_0001s24390 (10)	scaffold_1:23677887-23678016(-) (10)	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr2g114650.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2888.2.S1_a_at	A	A1TS	POPTR_0001s24390	POPTR_0001s24390 (11)	scaffold_1:23677252-23677560(-) (11)	NA	NA	NA	AT2G28780.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF939, bacterial (InterPro:IPR010343); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09450.1); Has 671 Blast hits to 667 proteins in 305 species: Archae - 0; Bacteria - 588; Metazoa - 0; Fungi - 2; Plants - 66; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). "	LOC_Os12g01020.1	conserved hypothetical protein	Medtr2g114650.1	"P-type trefoil, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.289.1.S1_at	A	A1TS	POPTR_0004s24210	POPTR_0004s24210 (10)	scaffold_4:22913446-22914220(-) (10)	NA	Q8R116	Protein notum homolog	AT5G45280.2	Pectinacetylesterase family protein 	LOC_Os04g51340.1	"pectinacetylesterase domain containing protein, expressed"	Medtr8g086480.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2890.1.A1_at	A	A1TS	POPTR_0010s23910	POPTR_0010s23910 (10)	scaffold_10:20365198-20366066(+) (10)	POPTR_0008s02890 (6)	Q4V3C8	3-phosphoinositide-dependent protein kinase 2	AT3G10540.1	3-phosphoinositide-dependent protein kinase 	LOC_Os01g65230.1	"AGC_AGC_other_PDK1_Pk61C.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr3g139660.1	"Serine/threonine protein kinase, active site "	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.2891.1.S1_s_at	A	A1TS	POPTR_0003s08120	POPTR_0003s08120 (10)	scaffold_3:9551819-9552150(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2893.1.S1_s_at	A	A1TS	POPTR_0005s27240	POPTR_0005s27240 (11)	scaffold_5:24972620-24973383(-) (11)	NA	P30924	"1,4-alpha-glucan-branching enzyme"	AT5G03650.1	starch branching enzyme 2.2 	LOC_Os06g51084.1	"1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed"	Medtr7g126840.1	"Alpha amylase, C-terminal all-beta; "	GO:0005975|carbohydrate metabolic process	"GO:0043169|cation binding||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.2900.1.S1_at	A	A1TS	POPTR_0003s11650	POPTR_0003s11650 (11)	scaffold_3:12426759-12427239(-) (11)	NA	Q2RNG2	[Protein-PII] uridylyltransferase	AT1G12420.1	ACT domain repeat 8 	LOC_Os08g02500.1	"ACT domain containing protein, putative"	Medtr8g106560.1	Amino acid-binding ACT 	GO:0008152|metabolic process	GO:0016597|amino acid binding	NA
Ptp.2903.1.A1_s_at	A	A2TS	POPTR_0012s01620	POPTR_0012s01620 (11)//POPTR_0012s01630 (11)	scaffold_12:1237445-1237480(+) (11)//scaffold_12:1244496-1244531(+) (11)	NA	Q39219	"Alternative oxidase 1a, mitochondrial"	AT3G22370.1	alternative oxidase 1A 	LOC_Os04g51150.1	"transposon protein, putative, unclassified, expressed"	Medtr5g026770.1	Alternative oxidase 	GO:0007585|respiratory gaseous exchange||GO:0055114|oxidation reduction	NA	GO:0005740|mitochondrial envelope
Ptp.2904.1.S1_s_at	A	A1TS	POPTR_0001s04310	POPTR_0001s04310 (11)	scaffold_1:3405580-3406985(-) (11)	NA	Q9FYC2	"Pheophorbide a oxygenase, chloroplastic"	AT4G25650.1	ACD1-like 	LOC_Os03g59110.1	"pheophorbide a oxygenase, chloroplast precursor, putative, expressed"	Medtr4g134180.1	Rieske [2Fe-2S] region 	GO:0055114|oxidation reduction	"GO:0051537|""2 iron, 2 sulfur cluster binding""||GO:0009055|electron carrier activity||GO:0016491|oxidoreductase activity"	NA
Ptp.2906.1.S1_at	A	A1TS	POPTR_0011s01410	POPTR_0011s01410 (11)	scaffold_11:989924-990350(-) (11)	NA	NA	NA	AT1G62305.1	"Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein "	LOC_Os01g50040.1	"DNA binding protein, putative, expressed"	Medtr4g143290.1	"Protein of unknown function DUF266, plant "	NA	GO:0008375|acetylglucosaminyltransferase activity	GO:0016020|membrane
Ptp.2908.1.A1_at	A	A1TS	POPTR_0013s07150	POPTR_0013s07150 (11)	scaffold_13:5878869-5881489(+) (11)	NA	P38935	DNA-binding protein SMUBP-2	AT5G35970.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os09g04440.1	"DNA-binding protein, putative, expressed"	Medtr7g110880.1	AAA ATPase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2909.1.A1_s_at	A	A5TS	POPTR_0019s01340	POPTR_0121s00210 (11)//POPTR_0019s01340 (11)//POPTR_0121s00230 (11)//POPTR_0019s01460 (11)//POPTR_0019s01370 (9)	scaffold_121:8953-9064(-) (11)//scaffold_121:28975-29086(-) (11)//scaffold_19:1181067-1181178(+) (11)//scaffold_19:1197418-1197514(+) (9)//scaffold_19:1275577-1275688(+) (11)	NA	Q93X23	"Myrcene synthase, chloroplastic"	AT3G25830.1	"terpene synthase-like sequence-1,8-cineole "	LOC_Os01g23530.1	"terpene synthase, putative"	Medtr2g078030.1	Terpene synthase-like; Terpenoid synthase 	GO:0008152|metabolic process	GO:0016829|lyase activity||GO:0000287|magnesium ion binding	NA
Ptp.291.1.S1_s_at	A	A1TS	POPTR_0016s03510	POPTR_0016s03510 (11)	scaffold_16:1877246-1877519(-) (11)	NA	Q6NLB1	F-box protein At2g26850	AT2G26850.1	F-box family protein 	LOC_Os01g17390.1	"OsFBX5 - F-box domain containing protein, expressed"	Medtr5g096190.1	Cyclin-like F-box 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2911.1.S1_at	A	A1TS	POPTR_0006s21950	POPTR_0006s21950 (11)	scaffold_6:20912560-20912773(-) (11)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2919.1.S1_a_at	A	A1TS	POPTR_0005s04150	POPTR_0005s04150 (11)	scaffold_5:2741319-2741360(+) (11)//scaffold_526:3331-3372(-) (11)	NA	Q9ASX2	Tropinone reductase homolog At1g07440	AT5G06060.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os03g16220.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed"	Medtr3g103330.1	Glucose/ribitol dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2919.2.A1_s_at	A	A2TS	POPTR_0005s04130	POPTR_0005s04130 (11)//POPTR_0526s00230 (11)	scaffold_5:2731411-2733504(+) (11)//scaffold_526:307-13961(-) (11)	NA	Q9ASR4	Branched-chain-amino-acid aminotransferase-like protein 2	AT5G27410.2	D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein 	LOC_Os03g24460.2	"aminotransferase domain containing protein, putative, expressed"	Medtr1g099060.1	"Aminotransferase, class IV "	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.2919.3.S1_at	A	A1TA	POPTR_0526s00210	POPTR_0526s00210 (11)	scaffold_526:3174-3630(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2920.1.S1_at	A	A1TS	POPTR_0006s08230	POPTR_0006s08230 (11)	scaffold_6:5977685-5978473(+) (11)	NA	Q9M531	Histone H2A	AT5G02560.1	histone H2A 12 	LOC_Os05g02300.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed"	Medtr2g114590.1	Histone H2A; Histone-fold 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.2922.1.S1_at	A	A1TS	POPTR_0009s11840	POPTR_0009s11840 (11)	scaffold_9:9748485-9749007(-) (11)	NA	P54654	Adenylyl cyclase-associated protein	AT4G34490.1	cyclase associated protein 1 	LOC_Os03g51250.1	"adenylyl cyclase-associated protein, putative, expressed"	Medtr4g095480.1	Cyclase-associated protein; 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.2924.1.A1_at	A	A1TS	POPTR_0004s18160	POPTR_0004s18160 (11)	scaffold_4:18156197-18156393(+) (11)	NA	Q8LBA6	CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1	AT1G68000.1	phosphatidylinositol synthase 1 	LOC_Os02g03110.2	"CDP-alcohol phosphatidyltransferase, putative, expressed"	Medtr4g098430.1	CDP-alcohol phosphatidyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2925.1.S1_at	A	A1TS	POPTR_0013s15610	POPTR_0013s15610 (9)	scaffold_13:15538439-15538736(-) (9)	NA	NA	NA	AT5G01970.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G30050.1); Has 240 Blast hits to 236 proteins in 72 species: Archae - 0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink). 	LOC_Os05g25070.1	expressed protein	Medtr3g083960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2927.1.A1_at	A	A1TS	POPTR_0006s20870	POPTR_0006s20870 (10)	scaffold_6:19919899-19920268(+) (10)	NA	O73787	Gamma-tubulin complex component 3 homolog	AT5G06680.1	spindle pole body component 98 	LOC_Os09g27370.2	"Spc97 / Spc98 family protein, putative, expressed"	Medtr7g112250.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
Ptp.2927.2.S1_at	A	A1TS	POPTR_0006s20870	POPTR_0006s20870 (10)	scaffold_6:19918824-19919318(+) (10)	POPTR_0016s05990 (6)	O73787	Gamma-tubulin complex component 3 homolog	AT5G06680.1	spindle pole body component 98 	LOC_Os09g27370.2	"Spc97 / Spc98 family protein, putative, expressed"	Medtr7g112250.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
Ptp.2928.1.A1_at	A	A1TS	POPTR_0004s07810	POPTR_0004s07810 (10)	scaffold_4:6408676-6408959(+) (10)	NA	Q20EV4	Putative septum site-determining protein minD	AT5G24020.1	septum site-determining protein (MIND) 	LOC_Os06g01690.1	"septum site-determining protein minD, putative, expressed"	Medtr4g092230.1	"Septum site-determining protein minD, putative "	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	"GO:0042242|""cobyrinic acid a,c-diamide synthase activity"""	NA
Ptp.2932.1.S1_at	A	A1TS	POPTR_0016s02000	POPTR_0016s02000 (11)	scaffold_16:928632-929299(+) (11)	NA	Q53196	Uncharacterized aminotransferase y4uB	AT3G22200.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os08g10510.1	"aminotransferase, putative, expressed"	Medtr4g103670.1	Aminotransferase class-III; ; 	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.2933.1.A1_at	A	A1TS	POPTR_0013s07500	POPTR_0013s07500 (10)	scaffold_13:6292839-6293589(+) (10)	NA	NA	NA	AT3G13960.1	growth-regulating factor 5 	LOC_Os04g51190.2	"growth-regulating factor, putative, expressed"	Medtr5g027250.1	QLQ 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	"GO:0005524|ATP binding||GO:0016818|""hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"""	GO:0005634|nucleus
Ptp.2937.1.S1_s_at	A	A1TS	POPTR_0001s35090	POPTR_0001s35090 (10)	scaffold_1:33369569-33370796(+) (10)	NA	Q9FNE2	Glutaredoxin-C2	AT5G40370.1	Glutaredoxin family protein 	LOC_Os04g42930.1	"OsGrx_C2.2 - glutaredoxin subgroup I, expressed"	Medtr3g114210.1	Thioredoxin fold 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.2942.1.A1_at	A	A1TS	POPTR_0014s13090	POPTR_0014s13090 (11)	scaffold_14:9626315-9626851(-) (11)	NA	Q54Y72	Rho GTPase-activating protein gacA	AT4G03100.1	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 	LOC_Os12g34840.1	"rhoGAP domain containing protein, expressed"	AC235488_25.1	PAK-box/P21-Rho-binding; RhoGAP AC235488.1 117094-119868 F EGN_Mt090430 200	GO:0023060|signal transmission||GO:0023046|signaling process||GO:0007165|signal transduction||GO:0023052|signaling	NA	GO:0005622|intracellular
Ptp.2944.1.A1_at	A	A1TS	POPTR_0007s13080	POPTR_0007s13080 (11)	scaffold_7:13251083-13251505(-) (11)	NA	NA	NA	AT2G18245.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os02g04110.1	expressed protein	Medtr5g020580.1	"Protein of unknown function DUF829, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2947.1.S1_at	A	A1MS	POPTR_0011s01530	POPTR_0011s01530 (9)	scaffold_11:1066237-1068053(-) (9)	NA	O95822	"Malonyl-CoA decarboxylase, mitochondrial"	AT4G04320.2	malonyl-CoA decarboxylase family protein 	LOC_Os09g23070.1	"malonyl-CoA decarboxylase, mitochondrial precursor, putative, expressed"	NA	NA	GO:0006633|fatty acid biosynthetic process||GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process	GO:0050080|malonyl-CoA decarboxylase activity	NA
Ptp.2948.1.S1_at	A	A1TS	POPTR_0001s15490	POPTR_0001s15490 (11)	scaffold_1:12306426-12306619(-) (11)	NA	P46601	Homeobox-leucine zipper protein HAT2	AT5G47370.1	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein 	LOC_Os10g41230.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g013110.1	"Leucine zipper, homeobox-associated; HD-ZIP protein, N-terminal; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0016563|transcription activator activity||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.2949.1.S1_at	A	A1TS	POPTR_0004s03890	POPTR_0004s03890 (10)	scaffold_4:2761112-2761719(+) (10)	NA	NA	NA	AT1G61065.1	Protein of unknown function (DUF1218) 	LOC_Os04g58160.3	"fiber protein Fb34, putative, expressed"	AC233672_3.1	Protein of unknown function DUF1218 AC233672.2 10435-11337 F EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2950.1.A1_at	A	A1TS	POPTR_0017s12970	POPTR_0017s12970 (11)	scaffold_17:13149217-13149941(+) (11)	NA	NA	NA	AT3G02120.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	AC231342_22.1	hypothetical protein AC231342.3 103028-102034 I EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2955.1.A1_at	A	A1TS	POPTR_0008s04480	POPTR_0008s04480 (10)	scaffold_8:2526057-2526791(-) (10)	NA	NA	NA	AT5G13610.1	Protein of unknown function (DUF155) 	LOC_Os07g49410.1	"uncharacterized ACR, YagE family COG1723 containing protein, expressed"	Medtr5g046070.1	Protein of unknown function DUF155 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2956.1.A1_at	A	A1TS	POPTR_0004s07950	POPTR_0004s07950 (11)	scaffold_4:6516490-6516833(-) (11)	NA	Q6NQJ8	Protein SET DOMAIN GROUP 40	AT5G17240.1	SET domain group 40 	LOC_Os07g28840.1	"SET domain containing protein, expressed"	Medtr5g084550.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2956.2.S1_at	A	A1TS	POPTR_0004s07950	POPTR_0004s07950 (9)	scaffold_4:6517407-6518856(-) (11)	NA	Q6NQJ8	Protein SET DOMAIN GROUP 40	AT5G17240.1	SET domain group 40 	LOC_Os07g28840.1	"SET domain containing protein, expressed"	Medtr5g084550.1	Nuclear protein SET 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2957.1.S1_at	A	A1TS	POPTR_0002s11900	POPTR_0002s11900 (9)	scaffold_2:8822622-8823115(+) (9)	NA	NA	NA	AT1G59590.1	ZCF37 	LOC_Os03g31740.1	"ZCF37, putative, expressed"	Medtr1g023050.1	"ZCF37, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2960.1.S1_at	A	A1TS	POPTR_0002s09010	POPTR_0002s09010 (11)	scaffold_2:6383077-6383291(+) (11)	NA	Q9FLF7	Probable MYST-like histone acetyltransferase 1	AT5G64610.1	histone acetyltransferase of the MYST family 1 	LOC_Os07g43360.1	"MYST-like histone acetyltransferase 1, putative, expressed"	Medtr3g008930.1	Chromo; MOZ/SAS-like protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups""||GO:0008270|zinc ion binding"	GO:0005634|nucleus
Ptp.2961.1.S1_at	A	A1TS	POPTR_0008s15460	POPTR_0008s15460 (11)	scaffold_8:10290563-10291071(+) (11)	NA	O34569	Uncharacterized N-acetyltransferase yoaA	AT3G22560.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os03g46250.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g140270.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.2962.1.A1_a_at	A	A1TS	POPTR_0010s03190	POPTR_0010s03190 (11)	scaffold_10:3902140-3902332(-) (11)	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT5G19070.1	SNARE associated Golgi protein family 	LOC_Os07g46220.1	"SNARE associated Golgi protein, putative, expressed"	Medtr4g033450.1	"UPF0043 membrane protein slr0305, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2962.1.A1_at	A	A1TS	POPTR_0010s03190	POPTR_0010s03190 (11)	scaffold_10:3902082-3904465(-) (11)	NA	Q55909	TVP38/TMEM64 family membrane protein slr0305	AT5G19070.1	SNARE associated Golgi protein family 	LOC_Os07g46220.1	"SNARE associated Golgi protein, putative, expressed"	Medtr4g033450.1	"UPF0043 membrane protein slr0305, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2965.1.A1_at	A	A1TS	POPTR_0012s07720	POPTR_0012s07720 (11)	scaffold_12:8623146-8624853(-) (11)	NA	Q86HG0	Mannose-1-phosphate guanyltransferase alpha	AT1G74910.2	ADP-glucose pyrophosphorylase family protein 	LOC_Os03g11050.1	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr6g009470.1	Bacterial transferase hexapeptide repeat 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.2967.1.S1_s_at	A	A1TS	POPTR_0006s00630	POPTR_0006s00630 (11)	scaffold_6:332652-333302(-) (11)	NA	Q9FIK7	"Probable acetyl-CoA acetyltransferase, cytosolic 2"	AT5G47720.4	Thiolase family protein 	LOC_Os09g07830.2	"acetyl-CoA acetyltransferase, cytosolic, putative, expressed"	AC233669_10.1	Thiolase AC233669.2 43191-49625 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.297.1.S1_s_at	A	A2TS	POPTR_0006s27050	POPTR_0018s01730 (11)//POPTR_0006s27050 (11)	scaffold_18:1575000-1575043(-) (11)//scaffold_6:25064794-25064837(-) (11)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os06g40450.3	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2971.1.S1_at	A	A1TS	POPTR_0013s11890	POPTR_0013s11890 (9)	scaffold_13:12509838-12512983(+) (10)	NA	O78458	Uncharacterized protein ycf37	AT1G22700.2	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os10g32300.1	"tetratricopeptide repeat domain containing protein, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2972.1.S1_at	A	A1TS	POPTR_0006s24630	POPTR_0006s24630 (11)	scaffold_6:23214860-23214942(-) (11)	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.2	calcineurin B-like protein 10 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr1g020570.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2972.1.S1_s_at	A	A1TS	POPTR_0006s24630	POPTR_0006s24630 (11)	scaffold_6:23212988-23214850(-) (11)	NA	Q7FRS8	Calcineurin B-like protein 10	AT4G33000.2	calcineurin B-like protein 10 	LOC_Os01g39770.1	"calcineurin B, putative, expressed"	Medtr1g020570.2	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2975.1.S1_at	A	A1TS	POPTR_0012s11040	POPTR_0012s11040 (10)	scaffold_12:11660388-11660660(-) (10)	NA	Q9C1W5	Mitochondrial import inner membrane translocase subunit tim16	AT3G59280.1	"Protein Transporter, Pam16 "	LOC_Os10g33910.1	"mitochondrial import inner membrane translocase subunit Tim16, putative, expressed"	Medtr1g124900.1	Protein of unknown function UPF0108 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2976.1.S1_at	A	A1TS	POPTR_0008s12920	POPTR_0008s12920 (11)	scaffold_8:8418222-8418292(+) (11)	NA	Q54R62	Uridine-cytidine kinase C	AT2G01460.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os04g21110.1	"phosphoribulokinase/Uridine kinase family protein, expressed"	Medtr8g115410.1	Phosphoribulokinase/uridine kinase; Adenylate cyclase 	GO:0008152|metabolic process	GO:0016301|kinase activity||GO:0005524|ATP binding	NA
Ptp.2977.1.A1_at	A	A1TS	POPTR_0005s07150	POPTR_0005s07150 (10)	scaffold_5:4811464-4811911(+) (10)	NA	O13965	Meiotically up-regulated gene 70 protein	AT3G52950.2	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os12g07190.1	"CBS domain-containing protein, putative, expressed"	Medtr4g144000.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2985.1.S1_at	A	A1TS	POPTR_0012s09940	POPTR_0012s09940 (11)	scaffold_12:10820336-10820424(-) (11)	NA	Q5MAU8	Probable inactive purple acid phosphatase 27	AT5G50400.1	purple acid phosphatase 27 	LOC_Os08g41880.1	"nucleotide pyrophosphatase/phosphodiesterase, putative, expressed"	Medtr8g109230.1	"Metallophosphoesterase; Purple acid phosphatase, N-terminal "	NA	GO:0016787|hydrolase activity	NA
Ptp.2986.1.S1_at	A	A1TS	POPTR_0019s02680	POPTR_0019s02680 (11)	scaffold_19:2480572-2480794(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2989.1.A1_at	A	A1MS	POPTR_0003s18380	POPTR_0003s18380 (9)	scaffold_3:17482043-17482473(-) (9)	POPTR_0003s18430 (8)	Q8L831	Nudix hydrolase 3	AT1G79690.1	nudix hydrolase homolog 3 	LOC_Os02g55030.1	"hydrolase, NUDIX family, domain containing protein, expressed"	NA	NA	NA	GO:0016787|hydrolase activity	NA
Ptp.299.1.A1_s_at	A	A1TS	POPTR_0012s12870	POPTR_0012s12870 (11)	scaffold_12:13248018-13248189(-) (11)	NA	A9IVX6	30S ribosomal protein S9	AT3G49080.1	Ribosomal protein S5 domain 2-like superfamily protein 	LOC_Os07g46440.1	"ribosomal protein, putative, expressed"	Medtr1g025880.1	Ribosomal protein S9 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.2991.1.A1_s_at	A	A1TS	POPTR_0007s06650	POPTR_0007s06650 (11)	scaffold_7:5049313-5051383(+) (11)	NA	Q5ZID2	Programmed cell death protein 2-like	AT5G64830.1	programmed cell death 2 C-terminal domain-containing protein 	LOC_Os04g54820.1	"programmed cell death 2 C-terminal domain-containing protein, putative, expressed"	Medtr3g144680.1	"Programmed cell death protein 2, C-terminal "	NA	NA	GO:0005737|cytoplasm
Ptp.2995.1.S1_s_at	A	A1TS	POPTR_0014s07830	POPTR_0014s07830 (11)	scaffold_14:5840480-5841297(-) (11)	NA	NA	NA	AT1G01730.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 42 Blast hits to 42 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 1; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr7g085210.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2996.1.S1_at	A	A1TA	POPTR_0015s14290	POPTR_0015s14290 (9)	scaffold_15:13955759-13956201(+) (11)	NA	NA	NA	AT5G51680.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.2996.2.A1_at	A	A1TS	POPTR_0015s14290	POPTR_0015s14290 (11)	scaffold_15:13955949-13956764(-) (11)	NA	NA	NA	AT5G51680.1	hydroxyproline-rich glycoprotein family protein 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3.1.S1_at	A	A1TS	POPTR_0005s20030	POPTR_0005s20030 (11)	scaffold_5:19044352-19045610(-) (11)	POPTR_0002s08420 (6)	Q9STN5	"Uncharacterized protein At4g08330, chloroplastic"	AT4G08330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os05g39060.1	expressed protein	Medtr1g037140.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.30.2.A1_s_at	A	A2TS	POPTR_0017s02120	POPTR_0017s02120 (11)//POPTR_0017s02140 (11)	scaffold_17:1548074-1548216(+) (11)//scaffold_17:1566886-1567028(+) (11)	NA	A4IGK4	RNA-binding protein 5	AT3G54230.1	suppressor of abi3-5 	LOC_Os02g07070.1	"RNA recognition motif family protein, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3000.1.S1_at	A	A1TS	POPTR_0017s05790	POPTR_0017s05790 (10)	scaffold_17:4522971-4524325(+) (10)	NA	A7SXZ6	Probable O-sialoglycoprotein endopeptidase	AT4G22720.2	Actin-like ATPase superfamily protein 	LOC_Os05g10630.1	"O-sialoglycoprotein endopeptidase, putative, expressed"	Medtr4g025830.1	"Peptidase M22, glycoprotease "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.3001.2.A1_s_at	A	A1TS	POPTR_0002s22440	POPTR_0002s22440 (11)	scaffold_2:19169414-19169910(-) (11)	NA	Q8CFY5	"Protoheme IX farnesyltransferase, mitochondrial"	AT2G44520.1	cytochrome c oxidase 10 	LOC_Os01g34390.1	"prenyltransferase, putative, expressed"	Medtr1g146440.1	UbiA prenyltransferase 	NA	GO:0004659|prenyltransferase activity	GO:0016021|integral to membrane
Ptp.3007.1.A1_s_at	A	A1TS	POPTR_0002s06770	POPTR_0002s06770 (11)	scaffold_2:4544586-4545923(-) (11)	NA	Q54IL5	UDP-sugar-dependent glycosyltransferase 52	AT1G43620.3	UDP-Glycosyltransferase superfamily protein 	LOC_Os01g64750.1	"sterol 3-beta-glucosyltransferase, putative, expressed"	Medtr1g125050.1	"Glycosyl transferase, family 28 "	GO:0005975|carbohydrate metabolic process||GO:0030259|lipid glycosylation	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.3011.1.A1_at	A	A1TS	POPTR_0015s13920	POPTR_0015s13920 (11)	scaffold_15:13687241-13688157(+) (11)	NA	Q9FJ82	"Putative dihydrodipicolinate reductase 3, chloroplastic"	AT5G52100.1	"Dihydrodipicolinate reductase, bacterial/plant "	LOC_Os03g02690.3	"dihydrodipicolinate reductase, putative, expressed"	Medtr1g129340.1	Dihydrodipicolinate reductase 	GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009089|lysine biosynthetic process via diaminopimelate||GO:0044281|small molecule metabolic process	GO:0008839|dihydrodipicolinate reductase activity	NA
Ptp.3014.1.A1_s_at	A	A1TS	POPTR_0002s16060	POPTR_0002s16060 (11)	scaffold_2:11957917-11958280(+) (11)	NA	NA	NA	AT4G00500.2	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g14490.2	"calmodulin-binding heat-shock protein, putative, expressed"	Medtr1g126930.1	"Lipase, class 3; Lipase 3, N-terminal; Zinc finger, C2H2-type "	GO:0016042|lipid catabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.3017.1.S1_at	A	A1TS	POPTR_0018s09240	POPTR_0018s09240 (10)	scaffold_18:10102778-10103216(+) (10)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G19670.1	Exostosin family protein 	LOC_Os01g01780.1	"exostosin family protein, putative, expressed"	AC235664_16.1	Exostosin-like AC235664.1 66545-63524 E EGN_Mt090430 200	NA	NA	GO:0016020|membrane
Ptp.3020.1.S1_s_at	A	A1TS	POPTR_0002s26640	POPTR_0002s26640 (11)	scaffold_2:23528578-23529451(+) (11)	NA	Q05047	Secologanin synthase	AT1G75130.1	"cytochrome P450, family 721, subfamily A, polypeptide 1 "	LOC_Os05g33600.1	"cytochrome P450 72A1, putative, expressed"	Medtr7g116990.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3021.1.S1_at	A	A1TS	POPTR_0004s22140	POPTR_0004s22140 (9)	scaffold_4:21092010-21092522(-) (9)	NA	Q6DBP8	GATA transcription factor 11	AT1G08010.2	GATA transcription factor 11 	LOC_Os02g56250.1	"GATA zinc finger domain containing protein, expressed"	Medtr2g110110.1	"Zinc finger, GATA-type "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0008270|zinc ion binding	NA
Ptp.3021.2.S1_at	A	A1TS	POPTR_0004s22150	POPTR_0004s22150 (9)	scaffold_4:21094406-21094917(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3022.1.A1_s_at	A	A1TS	POPTR_0007s14590	POPTR_0007s14590 (11)	scaffold_7:14345492-14345708(-) (11)	POPTR_0005s19080 (6)	P46604	Homeobox-leucine zipper protein HAT22	AT4G37790.1	Homeobox-leucine zipper protein family 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g015030.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.3022.2.S1_s_at	A	A1TS	POPTR_0002s24320	POPTR_0002s24320 (11)	scaffold_2:21721334-21722101(+) (11)	NA	Q9FUY2	Transcriptional corepressor LEUNIG	AT2G32700.6	LEUNIG_homolog 	LOC_Os02g56880.1	"transcriptional corepressor LEUNIG, putative, expressed"	Medtr7g064530.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3022.3.A1_at	A	A1MS	POPTR_0007s14590	POPTR_0007s14590 (11)	scaffold_7:14345730-14345800(-) (11)	NA	P46604	Homeobox-leucine zipper protein HAT22	AT4G37790.1	Homeobox-leucine zipper protein family 	LOC_Os08g36220.1	"homeobox associated leucine zipper, putative, expressed"	Medtr5g015030.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.3029.1.S1_a_at	A	A1MS	POPTR_0017s04920	POPTR_0017s04920 (11)	scaffold_17:3779979-3780251(-) (11)	NA	NA	NA	AT5G62270.1	BEST Arabidopsis thaliana protein match is: mucin-related (TAIR:AT2G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os01g58750.1	expressed protein	Medtr4g089720.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3030.1.S1_s_at	A	A1TS	POPTR_0010s18120	POPTR_0010s18120 (11)	scaffold_10:16484530-16485346(+) (11)	NA	Q9SAK4	"Succinate-semialdehyde dehydrogenase, mitochondrial"	AT1G79440.1	aldehyde dehydrogenase 5F1 	LOC_Os02g07760.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.3031.1.S1_at	A	A1TS	POPTR_0001s40180	POPTR_0001s40180 (11)	scaffold_1:39518864-39519266(-) (11)	NA	Q39688	Epidermis-specific secreted glycoprotein EP1	AT1G78860.1	D-mannose binding lectin protein with Apple-like carbohydrate-binding domain 	LOC_Os04g23720.1	"lectin protein kinase family protein, putative"	Medtr2g092290.1	Curculin-like (mannose-binding) lectin; Apple-like 	NA	GO:0005529|sugar binding	NA
Ptp.3032.1.S1_s_at	A	A2TS	POPTR_0014s02560	POPTR_0014s02560 (11)//POPTR_0014s02570 (11)	scaffold_14:2141416-2141869(-) (11)//scaffold_14:2144313-2144766(+) (11)	POPTR_1203s00200 (6)	Q9SND9	Uncharacterized acetyltransferase At3g50280	AT5G42830.1	HXXXD-type acyl-transferase family protein 	LOC_Os06g01350.1	"transferase family protein, putative, expressed"	Medtr3g147460.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.3033.1.A1_s_at	A	A1TS	POPTR_0004s11170	POPTR_0004s11170 (10)	scaffold_4:9759559-9759865(+) (10)	NA	Q9SN86	"Malate dehydrogenase, chloroplastic"	AT3G47520.1	malate dehydrogenase 	LOC_Os08g33720.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.3034.1.A1_at	A	A1TS	POPTR_0010s08770	POPTR_0010s08770 (9)	scaffold_10:9612716-9613191(-) (9)	NA	Q6YYA3	"Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic"	AT3G23070.1	CRM family member 3A 	LOC_Os11g37990.1	"chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed"	Medtr1g089760.1	Protein of unknown function UPF0044 	NA	GO:0003723|RNA binding	NA
Ptp.3035.1.S1_s_at	A	A1TS	POPTR_0018s02830	POPTR_0018s02830 (11)	scaffold_18:2497118-2499072(-) (11)	NA	NA	NA	AT2G24970.1	unknown protein; Has 33 Blast hits to 33 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os01g56090.1	expressed protein	Medtr1g016540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3036.1.A1_at	A	A1TS	POPTR_0018s02390	POPTR_0018s02390 (11)	scaffold_18:2140888-2141714(-) (11)	NA	Q93ZE8	Stromal cell-derived factor 2-like protein	AT2G25110.1	stromal cell-derived factor 2-like protein precursor 	LOC_Os08g17680.1	"stromal cell-derived factor 2-like protein precursor, putative, expressed"	Medtr3g138150.1	MIR 	NA	NA	GO:0016020|membrane
Ptp.3037.1.A1_at	A	A1TS	POPTR_0003s01790	POPTR_0003s01790 (10)	scaffold_3:1663896-1664902(+) (11)	NA	NA	NA	AT5G64160.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g51700.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3038.1.A1_at	A	A1TS	POPTR_0004s08030	POPTR_0004s08030 (9)	scaffold_4:6563328-6563736(-) (10)	NA	Q00594	Medium-chain-fatty-acid--CoA ligase	AT1G65880.1	benzoyloxyglucosinolate 1 	LOC_Os09g38350.1	"AMP-binding domain containing protein, expressed"	Medtr3g086630.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3039.1.S1_s_at	A	A1TS	POPTR_0019s07160	POPTR_0019s07160 (11)	scaffold_19:7885531-7885794(-) (11)	NA	Q84Y01	Inositol-tetrakisphosphate 1-kinase 1	AT5G16760.1	"Inositol 1,3,4-trisphosphate 5/6-kinase family protein "	LOC_Os10g42550.1	"Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed"	Medtr8g078040.1	"Inositol 1, 3, 4-trisphosphate 56-kinase "	GO:0032957|inositol trisphosphate metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0044281|small molecule metabolic process	"GO:0047325|inositol tetrakisphosphate 1-kinase activity||GO:0000287|magnesium ion binding||GO:0005524|ATP binding||GO:0035300|""inositol-1,3,4-trisphosphate 5/6-kinase activity"""	GO:0005622|intracellular
Ptp.3041.1.S1_at	A	A1TS	POPTR_0249s00200	POPTR_0249s00200 (9)	scaffold_249:19348-20046(+) (9)	POPTR_0004s03470 (8)	Q9C8H0	ABC transporter C family member 12	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.3041.2.S1_at	A	A2TS	POPTR_0004s03470	POPTR_0249s00200 (11)//POPTR_0004s03470 (11)	scaffold_249:17819-19143(+) (11)//scaffold_4:2386499-2387823(-) (11)	NA	Q42093	ABC transporter C family member 2	AT2G34660.2	multidrug resistance-associated protein 2 	LOC_Os04g52900.1	"ABC transporter family protein, putative, expressed"	AC233661_8.1	"ABC transporter, transmembrane region, type 1 AC233661.2 40651-52437 E EGN_Mt090430 200"	GO:0006810|transport	"GO:0042626|""ATPase activity, coupled to transmembrane movement of substances""||GO:0005524|ATP binding"	GO:0016021|integral to membrane
Ptp.3043.1.S1_s_at	A	A1TS	POPTR_0001s07400	POPTR_0001s07400 (11)	scaffold_1:5569711-5570058(-) (11)	NA	O24145	4-coumarate--CoA ligase 1	AT3G21240.1	4-coumarate:CoA ligase 2 	LOC_Os02g08100.1	"AMP-binding domain containing protein, expressed"	Medtr4g023340.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3044.1.S1_s_at	A	A1TS	POPTR_0017s04710	POPTR_0017s04710 (11)	scaffold_17:3612748-3613147(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3045.1.S1_at	A	A1TS	POPTR_0004s19960	POPTR_0004s19960 (11)	scaffold_4:19616949-19617106(+) (11)	NA	Q9SGD6	"Arogenate dehydratase/prephenate dehydratase 6, chloroplastic"	AT1G08250.1	arogenate dehydratase 6 	LOC_Os04g33390.1	"prephenate dehydratase domain containing protein, expressed"	Medtr4g073340.1	Prephenate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process	GO:0004664|prephenate dehydratase activity	NA
Ptp.3045.1.S1_s_at	A	A1TS	POPTR_0004s19960	POPTR_0004s19960 (11)	scaffold_4:19617202-19617498(+) (11)	NA	Q9SGD6	"Arogenate dehydratase/prephenate dehydratase 6, chloroplastic"	AT1G08250.1	arogenate dehydratase 6 	LOC_Os04g33390.1	"prephenate dehydratase domain containing protein, expressed"	Medtr4g073340.1	Prephenate dehydratase 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0009094|L-phenylalanine biosynthetic process	GO:0004664|prephenate dehydratase activity	NA
Ptp.3046.1.S1_at	A	A1TS	POPTR_0002s15840	POPTR_0002s15840 (9)	scaffold_2:11803790-11804057(+) (9)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034860.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3046.2.S1_a_at	A	A1TS	POPTR_0002s15840	POPTR_0002s15840 (11)	scaffold_2:11800727-11800868(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g44950.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034860.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3047.1.S1_at	A	A1TS	POPTR_0005s08010	POPTR_0005s08010 (11)	scaffold_5:5504937-5506265(-) (11)	NA	NA	NA	AT5G10150.1	Domain of unknown function (DUF966) 	LOC_Os03g09200.1	"domain of unknown function DUF966 domain containing protein, expressed"	Medtr4g140340.1	Protein of unknown function DUF966 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3049.1.S1_x_at	A	A1TS	POPTR_0006s13310	POPTR_0006s13310 (11)	scaffold_6:10534734-10534946(+) (11)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.3050.1.S1_s_at	A	A1TS	POPTR_0014s11030	POPTR_0014s11030 (11)	scaffold_14:8224960-8225696(+) (11)	NA	Q8LC45	Probable xyloglucan endotransglucosylase/hydrolase protein 33	AT1G10550.1	xyloglucan:xyloglucosyl transferase 33 	LOC_Os10g02770.1	"glycosyl hydrolases family 16, putative, expressed"	CU633465_9.1	"Concanavalin A-like lectin/glucanase; Xyloglucan endo-transglycosylase, C-terminal CU633465.7 82577-85450 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006073|cellular glucan metabolic process	"GO:0016762|xyloglucan:xyloglucosyl transferase activity||GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	GO:0048046|apoplast||GO:0005618|cell wall
Ptp.3052.1.S1_s_at	A	A1TS	POPTR_0002s16740	POPTR_0002s16740 (11)	scaffold_2:12502963-12503305(-) (11)	NA	A4IFP3	Fatty acid desaturase 3	AT2G46210.1	Fatty acid/sphingolipid desaturase 	LOC_Os09g16920.1	"desaturase/cytochrome b5 protein, putative, expressed"	AC146568_19.1	"Zinc finger, C2H2-type; Fatty acid desaturase/sphingolipid desaturase AC146568.11 95455-93352 E EGN_Mt090430 200"	GO:0006629|lipid metabolic process||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0016491|oxidoreductase activity	NA
Ptp.3053.1.A1_s_at	A	A1TS	POPTR_0003s11350	POPTR_0003s11350 (10)	scaffold_3:12184267-12184356(+) (10)	NA	Q93YR3	FAM10 family protein At4g22670	AT4G22670.1	HSP70-interacting protein 1 	LOC_Os02g01030.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr4g154660.1	Thioredoxin domain 2; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3055.1.S1_s_at	A	A1TS	POPTR_0015s05370	POPTR_0015s05370 (11)	scaffold_15:5735896-5736422(+) (11)	NA	P93163	Guanine nucleotide-binding protein alpha-2 subunit	AT1G31930.3	extra-large GTP-binding protein 3 	LOC_Os11g10050.1	"G-protein alpha subunit, putative, expressed"	Medtr6g080390.1	"G-protein alpha subunit, group I "	GO:0008150|biological_process||GO:0007186|G-protein coupled receptor protein signaling pathway||GO:0023052|signaling||GO:0023033|signaling pathway	GO:0019001|guanyl nucleotide binding||GO:0004871|signal transducer activity	NA
Ptp.3059.1.A1_s_at	A	A1TS	POPTR_0015s08900	POPTR_0015s08900 (11)	scaffold_15:10255220-10255487(-) (11)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.3059.2.A1_at	A	A1TS	POPTR_0015s08900	POPTR_0015s08900 (9)	scaffold_15:10255195-10255227(-) (9)	NA	P52178	"Triose phosphate/phosphate translocator, non-green plastid, chloroplastic"	AT5G33320.1	Glucose-6-phosphate/phosphate translocator-related 	LOC_Os08g25624.1	"phosphate/phosphate translocator, putative, expressed"	Medtr3g114120.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.3060.1.S1_at	A	A1TS	POPTR_0009s09040	POPTR_0009s09040 (11)	scaffold_9:8122814-8123175(-) (11)	NA	P29675	Pollen-specific protein SF3	AT1G10200.1	GATA type zinc finger transcription factor family protein 	LOC_Os12g32620.1	"OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed"	Medtr1g023020.1	"LIM, zinc-binding "	NA	GO:0008270|zinc ion binding	NA
Ptp.3061.1.S1_s_at	A	A1TS	POPTR_0018s04850	POPTR_0018s04850 (11)	scaffold_18:4230830-4234097(-) (11)	NA	Q5XD45	Putative hydrolase M6_Spy0533	AT2G25870.1	haloacid dehalogenase-like hydrolase family protein 	LOC_Os01g53720.2	expressed protein	Medtr1g008360.1	"Protein of unknown function UPF0054; HAD-superfamily hydrolase subfamily IIB; Zinc finger, C2H2-type "	GO:0008152|metabolic process	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.3062.1.S1_s_at	A	A1TS	POPTR_0008s02580	POPTR_0008s02580 (11)	scaffold_8:1273955-1273995(-) (11)	NA	Q39117	Trihelix transcription factor GT-2	AT5G03680.1	Duplicated homeodomain-like superfamily protein 	LOC_Os10g37240.4	expressed protein	Medtr1g116980.1	"Myb, DNA-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3064.1.S1_s_at	A	A1TS	POPTR_0008s16500	POPTR_0008s16500 (11)	scaffold_8:11077739-11077795(-) (11)	NA	NA	NA	AT1G04340.1	HR-like lesion-inducing protein-related 	LOC_Os03g05520.1	"nicotiana lesion-inducing like, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3065.1.S1_s_at	A	A1TS	POPTR_0001s20740	POPTR_0001s20740 (11)	scaffold_1:18835393-18839630(-) (11)	NA	NA	NA	AT1G55160.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). "	LOC_Os05g51540.1	expressed protein	AC202568_8.1	Ras GTPase; Calcium-binding EF-hand AC202568.9 36216-39258 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3066.1.S1_s_at	A	A1TS	POPTR_0009s17030	POPTR_0009s17030 (11)	scaffold_9:12832705-12833400(-) (11)	NA	Q99JW2	Aminoacylase-1	AT4G38220.1	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046680.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.3067.1.S1_s_at	A	A1TS	POPTR_0003s04010	POPTR_0003s04010 (11)	scaffold_3:4629840-4630614(-) (11)	NA	O04373	IAA-amino acid hydrolase ILR1-like 4	AT1G51760.1	peptidase M20/M25/M40 family protein 	LOC_Os01g37960.1	"hydrolase, putative, expressed"	Medtr2g121800.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.3068.1.S1_at	A	A1TS	POPTR_0006s12330	POPTR_0006s12330 (11)	scaffold_6:9490700-9491607(-) (11)	NA	O95271	Tankyrase-1	AT3G09890.1	Ankyrin repeat family protein 	LOC_Os03g05260.1	"ankyrin repeat domain containing protein, expressed"	Medtr2g055950.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.307.1.S1_s_at	A	A1TS	POPTR_0014s01060	POPTR_0014s01060 (11)	scaffold_14:991019-991564(-) (11)	NA	Q8RJP2	Rhamnogalacturonate lyase	AT2G22620.1	Rhamnogalacturonate lyase family protein 	LOC_Os08g44020.3	"rhamnogalacturonate lyase, putative, expressed"	Medtr3g127450.1	Galactose-binding like; Rhamnogalacturonate lyase; Galactose mutarotase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3071.1.S1_s_at	A	A1TS	POPTR_0002s21700	POPTR_0002s21700 (11)	scaffold_2:18254623-18255488(+) (11)	NA	Q9FJU9	"Glucan endo-1,3-beta-glucosidase 13"	AT2G05790.1	O-Glycosyl hydrolases family 17 protein 	LOC_Os02g53200.2	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g093030.1	"Glycoside hydrolase, family 17; X8 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3072.1.S1_s_at	A	A1TS	POPTR_0006s09130	POPTR_0006s09130 (11)	scaffold_6:6751362-6752150(+) (11)	NA	Q54K39	Mannose-1-phosphate guanyltransferase beta	AT2G39770.2	Glucose-1-phosphate adenylyltransferase family protein 	LOC_Os08g13930.2	"mannose-1-phosphate guanyltransferase, putative, expressed"	Medtr5g088050.1	Nucleotidyl transferase; Trimeric LpxA-like 	GO:0009058|biosynthetic process	GO:0016779|nucleotidyltransferase activity	NA
Ptp.3073.1.S1_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22927113-22927475(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3073.2.S1_a_at	A	A1TS	POPTR_0004s24220	POPTR_0004s24220 (11)	scaffold_4:22928269-22928492(-) (11)	NA	Q8R116	Protein notum homolog	AT4G19420.1	Pectinacetylesterase family protein 	LOC_Os02g47400.2	"pectinacetylesterase domain containing protein, expressed"	Medtr5g026420.1	Pectinacetylesterase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3074.1.S1_at	A	A1TS	POPTR_0016s04450	POPTR_0016s04450 (11)	scaffold_16:2612335-2613279(-) (11)	NA	NA	NA	AT2G42080.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os07g28800.1	"heat shock protein DnaJ, putative"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3076.1.A1_s_at	A	A1TS	POPTR_0019s02670	POPTR_0019s02670 (11)	scaffold_19:2464944-2467055(-) (11)	NA	NA	NA	AT2G18465.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g59060.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3076.2.S1_s_at	A	A1TS	POPTR_0019s02670	POPTR_0019s02670 (11)	scaffold_19:2468043-2469739(-) (11)	NA	NA	NA	AT2G18465.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os04g59060.1	"heat shock protein DnaJ, putative, expressed"	Medtr3g144220.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3077.1.A1_s_at	A	A1TS	POPTR_0006s14340	POPTR_0006s14340 (11)	scaffold_6:11665582-11666918(-) (11)	NA	O65351	Subtilisin-like protease	AT2G05920.1	Subtilase family protein 	LOC_Os09g26920.1	"OsSub57 - Putative Subtilisin homologue, expressed"	Medtr2g049250.1	"Protease-associated PA; Peptidase S8A, bacillopeptidase F "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.3078.1.S1_at	A	A1TS	POPTR_0015s07570	POPTR_0015s07570 (11)	scaffold_15:8850153-8850642(-) (11)	NA	Q8LGU7	Nuclear ribonuclease Z	AT1G74700.1	tRNAse Z1 	LOC_Os02g12290.1	"nuclear ribonuclease Z, putative"	Medtr5g092020.1	"Nuclear ribonuclease Z, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3079.1.S1_at	A	A1TS	POPTR_0006s20140	POPTR_0006s20140 (9)	scaffold_6:19198314-19200056(-) (9)	NA	Q54YG5	Trafficking protein particle complex subunit 5	AT5G58030.1	Transport protein particle (TRAPP) component 	LOC_Os01g51220.1	"transport protein particle component, Bet3, domain containing protein, expressed"	Medtr3g093070.1	"Transport protein particle (TRAPP) component, Bet3 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.308.1.A1_s_at	A	A1TS	POPTR_0015s12070	POPTR_0015s12070 (11)	scaffold_15:12485096-12485865(+) (11)	NA	P29402	Calnexin homolog 1	AT5G61790.1	calnexin 1 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr3g151490.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.3080.2.S1_at	A	A1MS	POPTR_0010s14810	POPTR_0010s14810 (11)	scaffold_10:14286980-14287170(+) (11)	NA	Q9JHB5	Translin-associated protein X	AT2G03780.1	Translin family protein 	LOC_Os01g16100.1	"translin, putative, expressed"	Medtr8g077500.1	Translin 	NA	GO:0043565|sequence-specific DNA binding	NA
Ptp.3081.1.S1_s_at	A	A1TS	POPTR_0016s06480	POPTR_0016s06480 (11)	scaffold_16:4346079-4349328(+) (11)	NA	Q94AX4	"D-lactate dehydrogenase [cytochrome], mitochondrial"	AT5G06580.1	FAD-linked oxidases family protein 	LOC_Os07g06890.1	"FAD-linked oxidoreductase protein, putative, expressed"	Medtr5g021170.1	"FAD linked oxidase, N-terminal "	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.3082.1.S1_s_at	A	A1TS	POPTR_0010s17810	POPTR_0010s17810 (11)	scaffold_10:16263177-16263682(+) (11)	NA	A2Z9A6	UPF0496 protein 4	AT1G01550.2	Protein of unknown function (DUF793) 	LOC_Os10g36950.1	"DUF677 domain containing protein, putative, expressed"	Medtr7g088420.1	"UPF0496 protein 4, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3083.1.S1_s_at	A	A1TS	POPTR_0009s01730	POPTR_0009s01730 (11)	scaffold_9:2256596-2256688(-) (11)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g47780.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3084.1.S1_s_at	A	A1TS	POPTR_0010s11840	POPTR_0010s11840 (11)	scaffold_10:11979570-11979796(-) (11)	NA	Q9ZU94	Cysteine-rich repeat secretory protein 12	AT2G01660.1	plasmodesmata-located protein 6 	LOC_Os04g45460.1	"cysteine-rich repeat secretory protein precursor, putative, expressed"	Medtr4g157410.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3085.1.S1_at	A	A1TS	POPTR_0012s11290	POPTR_0012s11290 (11)	scaffold_12:11792650-11792884(+) (11)	NA	P29402	Calnexin homolog 1	AT5G61790.1	calnexin 1 	LOC_Os04g32950.1	"calreticulin precursor protein, putative, expressed"	Medtr3g151490.1	Concanavalin A-like lectin/glucanase 	NA	GO:0005509|calcium ion binding	NA
Ptp.3086.1.S1_s_at	A	A2TS	POPTR_0002s13630	POPTR_0002s13630 (11)//POPTR_0014s04320 (11)	scaffold_14:3369033-3370744(-) (11)//scaffold_2:10099362-10100827(-) (11)	NA	P37221	"NAD-dependent malic enzyme 62 kDa isoform, mitochondrial"	AT2G13560.1	NAD-dependent malic enzyme 1 	LOC_Os07g31380.1	"NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed"	Medtr8g009260.2	Malic oxidoreductase 	NA	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.3087.1.S1_at	A	A1TS	POPTR_0006s19580	POPTR_0006s19580 (11)	scaffold_6:18623198-18623407(-) (11)	NA	Q9SWW6	Cellulose synthase A catalytic subunit 7 [UDP-forming]	AT5G17420.1	Cellulose synthase family protein 	LOC_Os09g25490.1	"CESA9 - cellulose synthase, expressed"	Medtr8g145000.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.3088.1.S1_at	A	A1TS	POPTR_0011s11320	POPTR_0011s11320 (9)	scaffold_11:14047678-14049343(+) (9)	NA	Q46948	Protein thiJ	AT1G53280.1	Class I glutamine amidotransferase-like superfamily protein 	LOC_Os06g34040.1	"DJ-1 family protein, putative, expressed"	Medtr4g129930.1	ThiJ/PfpI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3089.1.S1_at	A	A1TS	POPTR_0019s09690	POPTR_0019s09690 (11)	scaffold_19:11302038-11303529(-) (11)	NA	O59729	Uncharacterized protein slp1	AT1G71360.1	Galactose-binding protein 	LOC_Os01g65520.1	"Sad1 / UNC-like C-terminal domain containing protein, putative, expressed"	Medtr4g032100.1	Galactose-binding like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.309.1.A1_s_at	A	A1TS	POPTR_0013s05500	POPTR_0013s05500 (11)	scaffold_13:3932840-3934102(+) (11)	NA	Q552J0	T-complex protein 1 subunit theta	AT3G03960.1	TCP-1/cpn60 chaperonin family protein 	LOC_Os03g59020.1	"T-complex protein, putative, expressed"	Medtr6g030660.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.3090.1.A1_at	A	A1MS	POPTR_0014s01690	POPTR_0014s01690 (11)	scaffold_14:1581905-1581950(+) (11)	NA	Q37145	"Calcium-transporting ATPase 1, chloroplastic"	AT1G27770.1	autoinhibited Ca2+-ATPase 1 	LOC_Os12g39660.1	"calcium-transporting ATPase, plasma membrane-type, putative, expressed"	Medtr8g101510.1	"Cation transporting ATPase, C-terminal "	GO:0006812|cation transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0005524|ATP binding||GO:0015662|""ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism"""	GO:0016020|membrane
Ptp.3091.1.S1_at	A	A1TS	POPTR_0001s16180	POPTR_0001s16180 (11)	scaffold_1:12999133-13000529(-) (11)	NA	Q9SSB5	26S protease regulatory subunit 7 homolog A	AT1G53750.1	regulatory particle triple-A 1A 	LOC_Os06g09290.1	"26S protease regulatory subunit 7, putative, expressed"	Medtr1g121600.1	AAA ATPase; 26S proteasome subunit P45 	NA	GO:0005524|ATP binding	NA
Ptp.3092.1.S1_at	A	A1TS	POPTR_0004s04400	POPTR_0004s04400 (11)	scaffold_4:3147790-3147909(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3092.1.S1_s_at	A	A1TS	POPTR_0004s04400	POPTR_0004s04400 (11)	scaffold_4:3147479-3147752(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3092.2.S1_s_at	A	A2TS	POPTR_0004s04400	POPTR_0004s04400 (11)//POPTR_0011s05280 (11)	scaffold_11:5155570-5155720(-) (11)//scaffold_4:3148655-3148805(-) (11)	NA	NA	NA	AT1G28240.1	Protein of unknown function (DUF616) 	LOC_Os01g19870.1	"hydrolase, acting on carbon-nitrogen, putative, expressed"	Medtr2g017300.1	Protein of unknown function DUF616 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3093.1.A1_at	A	A1TS	POPTR_0010s24400	POPTR_0010s24400 (10)	scaffold_10:20632623-20633277(+) (10)	NA	A0JNC2	R3H domain-containing protein 2	AT3G10770.1	Single-stranded nucleic acid binding R3H protein 	LOC_Os09g39462.2	"nucleic acid binding protein, putative, expressed"	Medtr1g117280.1	Single-stranded nucleic acid binding R3H 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3094.1.S1_at	A	A1TS	POPTR_0008s07330	POPTR_0008s07330 (10)	scaffold_8:4487169-4487570(+) (10)	NA	NA	NA	AT2G40320.1	TRICHOME BIREFRINGENCE-LIKE 33 	LOC_Os03g60350.1	"leaf senescence related protein, putative, expressed"	Medtr5g090760.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3095.1.S1_s_at	A	A1TS	POPTR_0002s24630	POPTR_0002s24630 (11)	scaffold_2:21945568-21946144(-) (11)	NA	Q6PD26	GPI transamidase component PIG-S	AT3G07180.1	GPI transamidase component PIG-S-related 	LOC_Os01g67960.1	"GPI transamidase component PIG-S-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3096.1.A1_s_at	A	A1TS	POPTR_0008s11730	POPTR_0008s11730 (11)	scaffold_8:7505262-7505759(-) (11)	NA	Q38950	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	AT3G25800.1	protein phosphatase 2A  subunit A2 	LOC_Os09g07510.2	"HEAT repeat family protein, putative, expressed"	AC233660_2.1	Armadillo-like helical AC233660.2 13161-17702 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3097.1.S1_s_at	A	A1TS	POPTR_0009s07740	POPTR_0009s07740 (11)	scaffold_9:7198300-7198687(+) (11)	NA	Q68FD5	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os11g01380.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
Ptp.3098.1.S1_at	A	A1TS	POPTR_0008s06920	POPTR_0008s06920 (11)	scaffold_8:4163740-4167425(+) (11)	NA	O81488	PHD finger protein At5g26210	AT5G05610.2	alfin-like 1 	LOC_Os05g07040.1	"PHD finger protein, putative, expressed"	AC235756_22.1	"Zinc finger, FYVE/PHD-type AC235756.1 164740-161152 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.31.2.S1_s_at	A	A1TS	POPTR_0018s04840	POPTR_0018s04840 (11)	scaffold_18:4216403-4216749(+) (11)	NA	Q9LEI8	Profilin-6	AT4G29340.1	profilin 4 	LOC_Os10g17680.1	"profilin domain containing protein, expressed"	Medtr4g160100.1	Plant profilin 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	GO:0015629|actin cytoskeleton
Ptp.3102.1.S1_s_at	A	A1TS	POPTR_0001s13960	POPTR_0001s13960 (11)	scaffold_1:11002218-11002644(+) (11)	NA	Q9C7G0	65-kDa microtubule-associated protein 8	AT1G27920.1	microtubule-associated protein 65-8 	LOC_Os08g41890.1	"microtubule associated protein, putative, expressed"	Medtr3g103700.1	MAP65/ASE1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3103.1.S1_at	A	A1TS	POPTR_0016s01990	POPTR_0016s01990 (9)	scaffold_16:918491-918967(+) (9)	NA	Q8L5Y5	Probable S-acyltransferase At4g15080	AT4G15080.1	DHHC-type zinc finger family protein 	LOC_Os09g38970.1	"zinc finger family protein, putative, expressed"	Medtr4g103680.1	"Zinc finger, DHHC-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3105.1.S1_s_at	A	A1TS	POPTR_0012s11100	POPTR_0012s11100 (11)	scaffold_12:11686660-11687171(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT5G61840.1	Exostosin family protein 	LOC_Os01g70200.1	"exostosin family domain containing protein, expressed"	Medtr4g076460.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.311.1.A1_at	A	A1TS	POPTR_0006s25290	POPTR_0006s25290 (11)	scaffold_6:23698338-23698824(-) (11)	NA	P40235	Casein kinase I homolog hhp1	AT2G25760.1	Protein kinase family protein 	LOC_Os05g11140.3	"CK1_CaseinKinase_1a.5 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g008170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3110.2.S1_a_at	A	A1TS	POPTR_0008s09930	POPTR_0008s09930 (11)	scaffold_8:6151272-6152102(-) (11)	NA	Q6E2Z6	1-Cys peroxiredoxin	AT1G48130.1	1-cysteine peroxiredoxin 1 	LOC_Os07g44430.1	"peroxiredoxin, putative"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.3111.1.A1_a_at	A	A1TS	POPTR_0001s21870	POPTR_0001s21870 (11)	scaffold_1:20348857-20348996(-) (11)	NA	Q8RY89	Phosphatidylinositol-4-phosphate 5-kinase 8	AT1G60890.2	Phosphatidylinositol-4-phosphate 5-kinase family protein 	LOC_Os03g49510.1	"phosphatidylinositol-4-phosphate 5-kinase, putative, expressed"	Medtr4g137550.1	Phosphatidylinositol-4-phosphate 5-kinase 	GO:0046488|phosphatidylinositol metabolic process	GO:0016307|phosphatidylinositol phosphate kinase activity	NA
Ptp.3112.1.S1_s_at	A	A1TS	POPTR_0002s16440	POPTR_0002s16440 (11)	scaffold_2:12299769-12300104(-) (11)	NA	Q49YU2	Diacylglycerol kinase	AT2G46090.1	Diacylglycerol kinase family protein 	LOC_Os03g03400.1	"diacylglycerol kinase, putative, expressed"	Medtr7g088910.1	"Diacylglycerol kinase, catalytic region "	GO:0023033|signaling pathway||GO:0007205|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway||GO:0023052|signaling	GO:0004143|diacylglycerol kinase activity	NA
Ptp.3113.1.S1_at	A	A1TS	POPTR_0016s07280	POPTR_0016s07280 (11)	scaffold_16:5173512-5173675(-) (11)	NA	Q9C5R8	"2-Cys peroxiredoxin BAS1-like, chloroplastic"	AT5G06290.1	2-cysteine peroxiredoxin B 	LOC_Os02g33450.2	"peroxiredoxin, putative, expressed"	AC146630_2.1	Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen AC146630.25 6606-2553 E EGN_Mt090430 200	NA	GO:0016209|antioxidant activity||GO:0016491|oxidoreductase activity	NA
Ptp.3114.2.S1_s_at	A	A1TS	POPTR_0010s16620	POPTR_0010s16620 (11)	scaffold_10:15520001-15521295(-) (11)	NA	Q6DKC0	Erlin-2-B	AT2G03510.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os03g30790.1	"erlin-2 precursor, putative, expressed"	Medtr4g115350.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3115.1.S1_at	A	A1MS	POPTR_0003s02440	POPTR_0003s02440 (9)	scaffold_3:2525396-2525474(-) (9)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr2g126830.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3115.2.S1_a_at	A	A1TS	POPTR_0003s02440	POPTR_0003s02440 (11)	scaffold_3:2525146-2525304(-) (11)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr2g126830.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3115.2.S1_s_at	A	A1TS	POPTR_0003s02440	POPTR_0003s02440 (11)	scaffold_3:2526605-2527810(-) (11)	NA	P42322	Calcineurin subunit B	AT3G18430.2	Calcium-binding EF-hand family protein 	LOC_Os02g55880.1	"EF hand family protein, putative, expressed"	Medtr2g126830.1	Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3116.1.S1_at	A	A1TS	POPTR_0014s11480	POPTR_0014s11480 (9)	scaffold_14:8524901-8525225(+) (9)	NA	Q9S834	"ATP-dependent Clp protease proteolytic subunit 5, chloroplastic"	AT1G02560.1	nuclear encoded CLP protease 5 	LOC_Os03g19510.1	"OsClp4 - Putative Clp protease homologue, expressed"	Medtr1g106610.1	"Peptidase S14, ClpP "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004252|serine-type endopeptidase activity	NA
Ptp.3117.1.A1_at	A	A1TS	POPTR_0017s06620	POPTR_0017s06620 (9)	scaffold_17:5029870-5029902(+) (9)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3117.1.A1_s_at	A	A1TS	POPTR_0017s06620	POPTR_0017s06620 (11)	scaffold_17:5030915-5031266(+) (11)	NA	NA	NA	AT3G21865.1	peroxin 22 	LOC_Os04g53690.1	expressed protein	Medtr2g103650.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3118.1.S1_s_at	A	A2TS	POPTR_0001s07510	POPTR_0003s18540 (11)//POPTR_0001s07510 (11)	scaffold_1:5643661-5644228(+) (11)//scaffold_3:17585202-17585682(-) (11)	NA	Q84L33	Putative DNA repair protein RAD23-1	AT1G79650.2	Rad23 UV excision repair protein family 	LOC_Os02g08300.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
Ptp.312.1.S1_a_at	A	A1TS	POPTR_0006s15850	POPTR_0006s15850 (11)	scaffold_6:13524987-13525218(+) (11)	NA	Q9FH28	Chaperone protein dnaJ 49	AT3G57340.2	"Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) "	LOC_Os01g37560.3	"chaperone protein dnaJ 49, putative, expressed"	Medtr8g139780.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3120.1.S1_at	A	A1TS	POPTR_0002s01650	POPTR_0002s01650 (11)	scaffold_2:878461-878676(-) (11)	NA	Q96324	Glutathione S-transferase	AT3G03190.1	glutathione S-transferase F11 	LOC_Os03g04260.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3120.1.S1_x_at	A	A1TS	POPTR_0002s01650	POPTR_0002s01650 (11)	scaffold_2:878461-878727(-) (11)	NA	Q96324	Glutathione S-transferase	AT3G03190.1	glutathione S-transferase F11 	LOC_Os03g04260.1	"glutathione S-transferase, putative, expressed"	Medtr5g098120.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3122.1.S1_at	A	A1TS	POPTR_0010s25170	POPTR_0010s25170 (9)	scaffold_10:20983557-20983598(-) (9)	NA	P46302	40S ribosomal protein S28	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3122.1.S1_x_at	A	A1TS	POPTR_0010s25170	POPTR_0010s25170 (9)	scaffold_10:20983451-20984534(-) (9)	NA	P46302	40S ribosomal protein S28	AT5G64140.1	ribosomal protein S28 	LOC_Os10g27174.1	"40S ribosomal protein S28, putative, expressed"	Medtr6g013670.1	"Ribosomal protein S28e; Nucleic acid-binding, OB-fold, subgroup "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3125.1.S1_at	A	A1TA	POPTR_0011s04780	POPTR_0011s04780 (9)	scaffold_11:4750874-4752362(-) (9)	NA	P34914	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3125.3.S1_s_at	A	A1TS	POPTR_0011s04780	POPTR_0011s04780 (11)	scaffold_11:4752385-4752780(+) (11)	NA	P34914	Epoxide hydrolase 2	AT3G51000.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os10g35520.1	"hydrolase, alpha/beta fold family domain containing protein, expressed"	AC233672_2.1	Alpha/beta hydrolase fold AC233672.2 10326-8010 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3126.1.S1_s_at	A	A1TS	POPTR_0001s22620	POPTR_0001s22620 (11)	scaffold_1:21514545-21515245(-) (11)	NA	P19950	40S ribosomal protein S14	AT3G52580.1	Ribosomal protein S11 family protein 	LOC_Os02g06700.1	"ribosomal protein, putative, expressed"	Medtr2g024850.1	Ribosomal protein S11 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.313.1.A1_s_at	A	A1TS	POPTR_0013s10050	POPTR_0013s10050 (11)	scaffold_13:10027610-10028370(-) (11)	NA	P35136	D-3-phosphoglycerate dehydrogenase	AT1G72190.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os07g16040.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr3g013440.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.313.2.S1_s_at	A	A1TS	POPTR_0013s10050	POPTR_0013s10050 (11)	scaffold_13:10032129-10032866(-) (11)	NA	P35136	D-3-phosphoglycerate dehydrogenase	AT1G72190.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os07g16040.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr3g013440.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.313.3.A1_s_at	A	A1TS	POPTR_0013s10050	POPTR_0013s10050 (11)	scaffold_13:10027479-10027541(-) (11)	NA	P35136	D-3-phosphoglycerate dehydrogenase	AT1G72190.1	D-isomer specific 2-hydroxyacid dehydrogenase family protein 	LOC_Os07g16040.1	"erythronate-4-phosphate dehydrogenase domain containing protein, expressed"	Medtr3g013440.1	D-3-phosphoglycerate dehydrogenase 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.3130.1.S1_s_at	A	A1TS	POPTR_0006s21680	POPTR_0006s21680 (11)	scaffold_1402:5688-5729(-) (11)//scaffold_6:20704360-20704401(+) (11)	NA	P49637	60S ribosomal protein L27a-3	AT1G70600.1	Ribosomal protein L18e/L15 superfamily protein 	LOC_Os03g29460.1	"60S ribosomal protein, putative, expressed"	Medtr3g114720.1	Ribosomal protein L15 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3132.1.S1_s_at	A	A1TS	POPTR_0002s18420	POPTR_0002s18420 (11)	scaffold_2:14353339-14353819(-) (11)	NA	O23680	"Translocase of chloroplast 33, chloroplastic"	AT1G02280.2	translocon at the outer envelope membrane of chloroplasts 33 	LOC_Os03g13730.1	"translocase of chloroplast 34, putative, expressed"	Medtr7g104820.1	Chloroplast protein import component Toc34 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3132.2.S1_s_at	A	A1TS	POPTR_0002s18420	POPTR_0002s18420 (11)	scaffold_2:14357041-14357565(-) (11)	NA	O23680	"Translocase of chloroplast 33, chloroplastic"	AT1G02280.2	translocon at the outer envelope membrane of chloroplasts 33 	LOC_Os03g13730.1	"translocase of chloroplast 34, putative, expressed"	Medtr7g104820.1	Chloroplast protein import component Toc34 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3133.1.S1_s_at	A	A1TS	POPTR_0009s13590	POPTR_0009s13590 (11)	scaffold_9:10793915-10794041(+) (11)	NA	O65351	Subtilisin-like protease	AT4G34980.1	subtilisin-like serine protease 2 	LOC_Os03g13930.1	"OsSub28 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.3135.1.S1_at	A	A1TS	POPTR_0001s47450	POPTR_0001s47450 (10)	scaffold_1:47650766-47651004(-) (10)	NA	Q9ZTS2	"Ferredoxin, chloroplastic"	AT1G60950.1	2Fe-2S ferredoxin-like superfamily protein 	LOC_Os08g01380.1	"2Fe-2S iron-sulfur cluster binding domain containing protein, expressed"	Medtr4g137280.1	"2Fe-2S ferredoxin, iron-sulfur binding site "	NA	GO:0051536|iron-sulfur cluster binding||GO:0009055|electron carrier activity	NA
Ptp.3136.1.S1_at	A	A1TS	POPTR_0014s04880	POPTR_0014s04880 (10)	scaffold_14:3766575-3767245(-) (10)	NA	P39207	Nucleoside diphosphate kinase 1	AT4G09320.1	Nucleoside diphosphate kinase family protein 	LOC_Os10g41410.2	"nucleoside diphosphate kinase, putative, expressed"	Medtr8g109770.1	Nucleoside diphosphate kinase 	GO:0006228|UTP biosynthetic process||GO:0006241|CTP biosynthetic process||GO:0006183|GTP biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004550|nucleoside diphosphate kinase activity||GO:0005524|ATP binding	NA
Ptp.3138.2.A1_a_at	A	A1TS	POPTR_0009s13580	POPTR_0009s13580 (11)	scaffold_9:10779737-10780056(-) (11)	NA	Q9SBQ8	Kaempferol 3-O-beta-D-galactosyltransferase	AT5G17050.1	UDP-glucosyl transferase 78D2 	LOC_Os06g09240.1	"anthocyanidin 3-O-glucosyltransferase, putative, expressed"	Medtr8g128440.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008152|metabolic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.314.1.A1_at	A	A1TS	POPTR_0018s09570	POPTR_0018s09570 (11)	scaffold_18:10509282-10513455(+) (11)	NA	Q9LVC8	"Ubiquinone biosynthesis methyltransferase COQ5, mitochondrial"	AT5G57300.3	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g74520.1	"methyltransferase domain containing protein, putative, expressed"	Medtr4g005810.1	UbiE/COQ5 methyltransferase 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.3142.1.A1_at	A	A1TS	POPTR_0002s10430	POPTR_0002s10430 (11)	scaffold_2:7525053-7525782(+) (11)	NA	NA	NA	AT4G24610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65440.1); Has 820 Blast hits to 264 proteins in 74 species: Archae - 0; Bacteria - 15; Metazoa - 77; Fungi - 83; Plants - 96; Viruses - 0; Other Eukaryotes - 549 (source: NCBI BLink). 	LOC_Os02g52280.1	expressed protein	Medtr5g074970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3143.2.S1_a_at	A	A1TS	POPTR_0006s10950	POPTR_0006s10950 (11)	scaffold_6:8321489-8321528(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3143.2.S1_at	A	A1MS	POPTR_0006s10950	POPTR_0006s10950 (11)	scaffold_6:8321143-8321431(-) (11)	NA	Q9LY00	Probable WRKY transcription factor 70	AT3G56400.1	WRKY DNA-binding protein 70 	LOC_Os05g25770.1	"OsWRKY45 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g124640.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3145.1.S1_s_at	A	A1TA	POPTR_0010s18940	POPTR_0010s18940 (11)	scaffold_10:17025621-17025969(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3147.2.S1_a_at	A	A2TS	POPTR_0014s01860	POPTR_0014s17560 (11)//POPTR_0014s01860 (11)	scaffold_14:1708648-1709219(-) (11)//scaffold_14:13807852-13808426(-) (11)	NA	P33642	Probable D-amino acid oxidase PA4548	AT5G48440.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g33900.1	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr7g046700.1	FAD dependent oxidoreductase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3148.1.S1_s_at	A	A1MS	POPTR_0014s17010	POPTR_0014s17010 (11)	scaffold_14:13197062-13197459(+) (11)	NA	Q8LPQ9	Flowering time control protein FPA	AT4G12640.1	RNA recognition motif (RRM)-containing protein 	LOC_Os09g12730.2	"RNA recognition motif containing protein, expressed"	Medtr3g111300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.315.1.A1_at	A	A1TS	POPTR_0013s08350	POPTR_0013s08350 (11)	scaffold_13:7434745-7434794(+) (11)	NA	Q9FFE0	Regulator of ribonuclease-like protein 2	AT5G16450.2	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase 	LOC_Os01g52460.2	"regulator of ribonuclease, putative, expressed"	Medtr7g089680.1	Protein of unknown function 1935 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3160.1.S1_at	A	A1TS	POPTR_0007s13560	POPTR_0007s13560 (11)	scaffold_7:13607539-13607655(-) (11)	NA	Q9H0R3	Transmembrane protein 222	AT3G51040.3	RTE1-homolog 	LOC_Os03g58520.1	"green ripe-like, putative, expressed"	Medtr5g021070.1	Protein of unknown function DUF778 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3161.1.S1_s_at	A	A1TS	POPTR_0017s12810	POPTR_0017s12810 (11)	scaffold_17:12991782-12992832(+) (11)	NA	Q9LLC1	"Biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic"	AT5G15530.1	biotin carboxyl carrier protein 2 	NA	NA	AC231342_10.1	Biotin-binding site AC231342.3 52802-49143 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3162.1.S1_at	A	A1TA	POPTR_0002s17680	POPTR_0002s17680 (10)	scaffold_2:13491963-13492435(+) (10)	NA	P46897	Homeobox-leucine zipper protein ATHB-7	AT2G46680.1	homeobox 7 	LOC_Os09g35910.1	"homeobox associated leucine zipper, putative, expressed"	Medtr8g029340.1	"Leucine zipper, homeobox-associated; Homeodomain-related "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	GO:0005634|nucleus
Ptp.3167.1.S1_at	A	A1TS	POPTR_0008s11840	POPTR_0008s11840 (11)	scaffold_8:7580856-7581228(-) (11)	NA	Q84L30	Putative DNA repair protein RAD23-4	AT5G38470.1	Rad23 UV excision repair protein family 	LOC_Os09g24200.2	"RAD23 DNA repair protein, putative, expressed"	AC233655_33.1	UV excision repair protein Rad23; AC233655.2 202498-207445 E EGN_Mt090430 200	GO:0043161|proteasomal ubiquitin-dependent protein catabolic process||GO:0006289|nucleotide-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003684|damaged DNA binding	NA
Ptp.3170.2.A1_at	A	A1TA	POPTR_0002s06280	POPTR_0002s06280 (10)	scaffold_2:4197666-4198191(-) (11)	NA	NA	NA	AT5G36120.1	"cofactor assembly, complex C (B6F) "	LOC_Os01g73540.1	"YGGT family protein, putative, expressed"	NA	NA	NA	NA	GO:0016020|membrane
Ptp.3171.1.S1_s_at	A	A1TS	POPTR_0014s12350	POPTR_0014s12350 (11)	scaffold_14:9117894-9119616(+) (11)	NA	NA	NA	AT3G62880.2	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 	NA	NA	Medtr1g108360.1	"Mitochondrial import inner membrane translocase, subunit Tim17/22 "	GO:0015031|protein transport	GO:0008565|protein transporter activity	GO:0005743|mitochondrial inner membrane
Ptp.3173.1.S1_s_at	A	A1TS	POPTR_0007s06650	POPTR_0007s06650 (11)	scaffold_7:5047032-5047789(+) (11)	NA	Q5ZID2	Programmed cell death protein 2-like	AT5G64830.1	programmed cell death 2 C-terminal domain-containing protein 	LOC_Os04g54820.1	"programmed cell death 2 C-terminal domain-containing protein, putative, expressed"	Medtr3g144680.1	"Programmed cell death protein 2, C-terminal "	NA	NA	GO:0005737|cytoplasm
Ptp.3178.1.S1_at	A	A1TS	POPTR_0006s16020	POPTR_0006s16020 (9)	scaffold_6:13800782-13801419(+) (9)	NA	Q9FM64	"Pentatricopeptide repeat-containing protein At5g55740, chloroplastic"	AT5G55740.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g42280.1	"pentatricopeptide, putative, expressed"	Medtr8g077950.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3179.1.S1_at	A	A1TS	POPTR_0002s07830	POPTR_0002s07830 (10)	scaffold_2:5386262-5387966(+) (10)	POPTR_0002s07850 (7)	Q8DHU4	Protein translocase subunit secA	AT1G21650.2	Preprotein translocase SecA family protein 	LOC_Os11g08980.1	"preprotein translocase secA family protein, putative, expressed"	Medtr1g105810.1	SecA protein 	GO:0017038|protein import	GO:0005524|ATP binding||GO:0005515|protein binding	GO:0016020|membrane
Ptp.3180.1.S1_x_at	A	A1TS	POPTR_0002s09610	POPTR_0002s09610 (11)	scaffold_2:6883468-6884176(-) (11)	NA	Q9SYT0	Annexin D1	AT1G35720.1	annexin 1 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
Ptp.3186.1.S1_a_at	A	A1TS	POPTR_0002s10930	POPTR_0002s10930 (11)	scaffold_2:7984659-7985370(+) (11)	NA	NA	NA	AT2G17280.2	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g121830.1	"phosphoglycerate mutase-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3188.1.S1_s_at	A	A1TS	POPTR_0002s05130	POPTR_0002s05130 (11)	scaffold_2:3329135-3329868(+) (11)	NA	Q9ZQI8	Non-specific lipid-transfer protein-like protein At2g13820	AT3G22600.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g57990.1	"LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr5g007090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.319.1.A1_at	A	A1TS	POPTR_0018s03440	POPTR_0018s03440 (11)	scaffold_18:3013348-3014374(-) (11)	NA	NA	NA	AT4G31570.1	CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). 	LOC_Os02g05490.1	expressed protein	Medtr1g010620.1	Prefoldin 	GO:0016032|viral reproduction	NA	NA
Ptp.3190.1.S1_s_at	A	A1TS	POPTR_0004s15080	POPTR_0004s15080 (11)	scaffold_4:15753001-15753214(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT3G19130.1	RNA-binding protein 47B 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g129250.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3190.3.A1_at	A	A1TA	POPTR_0004s15080	POPTR_0004s15080 (11)	scaffold_4:15753094-15753394(-) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT3G19130.1	RNA-binding protein 47B 	LOC_Os09g28810.1	"RNA recognition motif containing protein, putative, expressed"	Medtr4g129250.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3195.1.S1_s_at	A	A1TS	POPTR_0002s04640	POPTR_0002s04640 (11)	scaffold_2:2900429-2901880(+) (11)	NA	P42390	"Indole-3-glycerol phosphate lyase, chloroplastic"	AT3G54640.1	tryptophan synthase alpha chain 	LOC_Os07g08430.1	"indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006568|tryptophan metabolic process	GO:0004834|tryptophan synthase activity	NA
Ptp.3197.1.S1_at	A	A1TS	POPTR_0001s45530	POPTR_0001s45530 (11)	scaffold_1:46036221-46036991(-) (11)	NA	Q00763	Caffeic acid 3-O-methyltransferase 1	AT5G54160.1	O-methyltransferase 1 	LOC_Os08g06100.1	"O-methyltransferase, putative, expressed"	Medtr3g122520.1	"O-methyltransferase, family 2; Dimerisation "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.320.1.S1_at	A	A1TS	POPTR_0010s15740	POPTR_0010s15740 (9)	scaffold_10:14862852-14863190(+) (9)	NA	P57741	Probable prefoldin subunit 3	AT5G49510.2	prefoldin 3 	LOC_Os12g37590.1	"prefoldin, putative, expressed"	Medtr2g037940.1	Prefoldin alpha-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0051082|unfolded protein binding	GO:0016272|prefoldin complex
Ptp.3200.1.S1_s_at	A	A1TS	POPTR_0005s11690	POPTR_0005s11690 (11)	scaffold_5:8519270-8520031(-) (11)	NA	Q3TSG4	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3204.1.S1_at	A	A1MS	POPTR_0009s03880	POPTR_0009s03880 (10)	scaffold_9:4445507-4446211(-) (10)	NA	Q8VZI8	"ATP-dependent zinc metalloprotease FTSH 10, mitochondrial"	AT1G07510.1	FTSH protease 10 	LOC_Os05g38400.1	"OsFtsH8  FtsH protease, homologue of AtFtsH3/10, expressed"	Medtr4g084650.1	"AAA ATPase; Peptidase M41, FtsH extracellular "	GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0005524|ATP binding||GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	GO:0016021|integral to membrane
Ptp.3205.1.S1_at	A	A1TS	POPTR_0005s18330	POPTR_0005s18330 (10)	scaffold_5:16476973-16477938(-) (10)	POPTR_0007s10840 (8)	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT5G67130.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os09g02729.1	"phospholipase C, putative, expressed"	Medtr5g016790.1	"Carbohydrate kinase, FGGY; Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.321.1.S1_a_at	A	A1TS	POPTR_0012s10340	POPTR_0012s10340 (11)	scaffold_12:11147956-11148413(+) (11)	NA	Q9FED2	HVA22-like protein e	AT5G50720.1	HVA22 homologue E 	LOC_Os11g30500.1	"HVA22, putative, expressed"	Medtr3g150830.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.321.2.S1_at	A	A1MS	POPTR_0012s10340	POPTR_0012s10340 (11)	scaffold_12:11147591-11148445(+) (11)	NA	Q9FED2	HVA22-like protein e	AT5G50720.1	HVA22 homologue E 	LOC_Os11g30500.1	"HVA22, putative, expressed"	Medtr3g150830.1	TB2/DP1 and HVA22 related protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3210.1.S1_at	A	A1TS	POPTR_0019s08980	POPTR_0019s08980 (11)	scaffold_19:10584604-10585163(+) (11)	NA	Q2V0W1	Pheophorbidase	AT3G10870.1	methyl esterase 17 	LOC_Os12g02500.1	"esterase, putative, expressed"	Medtr5g076890.1	Alpha/beta hydrolase fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3212.1.S1_at	A	A1TS	POPTR_0011s00310	POPTR_0011s00310 (11)	scaffold_11:99196-99709(+) (11)	NA	NA	NA	AT4G21215.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	NA	NA	Medtr5g005770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3214.1.A1_s_at	A	A1TS	POPTR_0006s28230	POPTR_0006s28230 (11)	scaffold_6:25985731-25986227(-) (11)	NA	Q9SM44	"Monogalactosyldiacylglycerol synthase, chloroplastic"	AT4G31780.2	monogalactosyl diacylglycerol synthase 1 	LOC_Os09g25580.1	"monogalactosyldiacylglycerol synthase, putative, expressed"	AC235758_1.1	"Glycosyltransferase 28, C-terminal; Monogalactosyldiacylglycerol synthase AC235758.1 7116-1932 E EGN_Mt090430 200"	GO:0009247|glycolipid biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.3214.2.S1_s_at	A	A1TS	POPTR_0006s28230	POPTR_0006s28230 (11)	scaffold_6:25989569-25989933(-) (11)	NA	Q9SM44	"Monogalactosyldiacylglycerol synthase, chloroplastic"	AT4G31780.2	monogalactosyl diacylglycerol synthase 1 	LOC_Os09g25580.1	"monogalactosyldiacylglycerol synthase, putative, expressed"	AC235758_1.1	"Glycosyltransferase 28, C-terminal; Monogalactosyldiacylglycerol synthase AC235758.1 7116-1932 E EGN_Mt090430 200"	GO:0009247|glycolipid biosynthetic process	"GO:0016758|""transferase activity, transferring hexosyl groups"""	NA
Ptp.3215.2.S1_at	A	A1TS	POPTR_0004s01690	POPTR_0004s01690 (11)	scaffold_4:1020046-1021312(-) (11)	NA	O13759	RNA-binding post-transcriptional regulator csx1	AT1G11650.2	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g37270.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3217.1.A1_at	A	A1TS	POPTR_0001s30350	POPTR_0001s30350 (10)	scaffold_1:28851071-28851557(+) (10)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g39090.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3217.2.S1_at	A	A1TS	POPTR_0001s30350	POPTR_0001s30350 (10)	scaffold_1:28850270-28850597(+) (10)	NA	NA	NA	AT4G33890.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G14850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os12g39090.2	expressed protein	Medtr1g010740.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3218.1.S1_at	A	A1TS	POPTR_0014s04920	POPTR_0014s04920 (9)	scaffold_14:3810930-3811309(+) (9)	NA	Q8LPS6	Pentatricopeptide repeat-containing protein At1g02150	AT1G02150.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os04g46010.1	"PPR repeat domain containing protein, putative, expressed"	AC202489_31.1	Pentatricopeptide repeat AC202489.10 131297-133733 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3221.1.S1_s_at	A	A1TS	POPTR_0019s09670	POPTR_0019s09670 (11)	scaffold_19:11271242-11271319(-) (11)	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.3225.1.S1_s_at	A	A1TS	POPTR_0008s03540	POPTR_0008s03540 (11)	scaffold_8:1893203-1894691(-) (11)	NA	P35159	Ribosomal large subunit pseudouridine synthase B	AT2G39140.1	pseudouridine synthase family protein 	LOC_Os03g05806.1	"pseudouridine synthase family protein, putative, expressed"	NA	NA	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.3227.1.S1_s_at	A	A1TS	POPTR_0011s14270	POPTR_0011s14270 (11)	scaffold_11:16733055-16735347(+) (11)	NA	Q147X3	"N-alpha-acetyltransferase 30, NatC catalytic subunit"	AT2G38130.2	Acyl-CoA N-acyltransferases (NAT) superfamily protein 	LOC_Os11g32280.1	"acetyltransferase, GNAT family, putative, expressed"	Medtr7g097190.1	GCN5-related N-acetyltransferase 	GO:0008152|metabolic process	GO:0008080|N-acetyltransferase activity	NA
Ptp.3228.1.A1_a_at	A	A1TS	POPTR_0007s11470	POPTR_0007s11470 (11)	scaffold_7:11837295-11837402(-) (11)	NA	Q9FGT7	Two-component response regulator ARR18	AT4G37180.1	Homeodomain-like superfamily protein 	LOC_Os03g55590.1	"MYB family transcription factor, putative, expressed"	Medtr5g017970.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.323.1.S1_s_at	A	A3TS	POPTR_0005s11570	POPTR_0005s11600 (11)//POPTR_0005s11570 (11)//POPTR_0005s11610 (11)	scaffold_5:8399496-8400129(-) (11)//scaffold_5:8410000-8410624(-) (11)//scaffold_5:8417845-8418468(-) (11)	POPTR_1289s00200 (6)	Q07353	"Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)"	AT3G51240.2	flavanone 3-hydroxylase 	LOC_Os04g56700.1	"naringenin,2-oxoglutarate 3-dioxygenase, putative, expressed"	Medtr8g089960.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3232.1.S1_at	A	A1TS	POPTR_0007s14760	POPTR_0007s14760 (10)	scaffold_7:14517934-14519637(+) (10)	NA	NA	NA	AT5G65880.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr8g101930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3235.1.S1_at	A	A1TS	POPTR_0001s39580	POPTR_0001s39580 (9)	scaffold_1:38784922-38785273(-) (9)	NA	NA	NA	AT3G14860.2	NHL domain-containing protein 	LOC_Os02g13950.1	"NHL repeat-containing protein, putative, expressed"	Medtr2g091670.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3238.1.S1_s_at	A	A1TS	POPTR_0007s15300	POPTR_0007s15300 (11)	scaffold_7:14881064-14881413(+) (11)	NA	NA	NA	AT3G19990.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). "	LOC_Os02g58150.1	expressed protein	Medtr1g047000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3242.1.S1_s_at	A	A1TS	POPTR_0004s05770	POPTR_0004s05770 (11)	scaffold_4:4529402-4530522(+) (11)	NA	Q39011	Shaggy-related protein kinase eta	AT4G18710.1	Protein kinase superfamily protein 	LOC_Os05g11730.1	"CGMC_GSK.7 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr2g097890.1	Protein kinase; 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3244.1.S1_at	A	A1TS	POPTR_0006s04290	POPTR_0006s04290 (9)	scaffold_6:2933450-2933486(+) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3245.1.S1_s_at	A	A1TS	POPTR_0017s06840	POPTR_0017s06840 (11)	scaffold_17:5221289-5221854(+) (11)	NA	O64407	Beta-amylase	AT4G15210.1	beta-amylase 5 	LOC_Os07g35940.1	"beta-amylase, putative"	Medtr2g103430.1	"Glycoside hydrolase, family 14 "	GO:0000272|polysaccharide catabolic process||GO:0009057|macromolecule catabolic process	GO:0016161|beta-amylase activity	NA
Ptp.3246.1.S1_x_at	A	A1TS	POPTR_0005s26930	POPTR_0005s26930 (11)	scaffold_5:24773907-24774072(-) (11)	NA	P42759	Dehydrin ERD10	AT1G20450.1	Dehydrin family protein 	NA	NA	Medtr3g162880.1	Dehydrin 	GO:0006950|response to stress||GO:0009415|response to water	NA	NA
Ptp.325.1.A1_s_at	A	A1TS	POPTR_0002s17570	POPTR_0002s17570 (10)	scaffold_2:13358744-13359160(+) (10)	NA	O48927	Cytochrome P450 78A3	AT2G46660.1	"cytochrome P450, family 78, subfamily A, polypeptide 6 "	LOC_Os08g43390.1	"cytochrome P450, putative, expressed"	Medtr8g029390.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3250.1.S1_s_at	A	A1TS	POPTR_0016s05520	POPTR_0016s05520 (11)	scaffold_16:3457642-3458014(+) (11)	NA	Q941L0	Cellulose synthase A catalytic subunit 3 [UDP-forming]	AT5G05170.1	Cellulose synthase family protein 	LOC_Os07g10770.1	"CESA8 - cellulose synthase, expressed"	Medtr3g029130.1	"Zinc finger, RING-type; Cellulose synthase "	GO:0030244|cellulose biosynthetic process||GO:0034645|cellular macromolecule biosynthetic process	GO:0016760|cellulose synthase (UDP-forming) activity	GO:0016020|membrane
Ptp.3252.1.S1_s_at	A	A1TS	POPTR_0012s10140	POPTR_0012s10140 (11)	scaffold_12:10960609-10962332(-) (11)	NA	O13965	Meiotically up-regulated gene 70 protein	AT5G50530.1	CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein 	LOC_Os01g69900.1	"CBS domain-containing protein, putative, expressed"	Medtr3g150700.1	Octicosapeptide/Phox/Bem1p; CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3254.1.S1_at	A	A1TS	POPTR_0006s21210	POPTR_0006s21210 (11)	scaffold_6:20307002-20307573(+) (11)	NA	P51427	40S ribosomal protein S5-2	AT3G11940.2	ribosomal protein 5A 	LOC_Os11g29190.2	"40S ribosomal protein S5, putative, expressed"	AC235488_12.1	Ribosomal protein S7 AC235488.1 52998-48408 E EGN_Mt090430 200	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3258.1.S1_at	A	A1TS	POPTR_0008s07870	POPTR_0008s07870 (9)	scaffold_8:4834038-4834499(-) (9)	NA	Q84W55	"Type II inositol-1,4,5-trisphosphate 5-phosphatase FRA3"	AT1G65580.1	Endonuclease/exonuclease/phosphatase family protein 	LOC_Os08g41270.1	"endonuclease/exonuclease/phosphatase family domain containing protein, expressed"	Medtr6g092550.1	Endonuclease/exonuclease/phosphatase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3259.2.S1_a_at	A	A1TS	POPTR_0006s26180	POPTR_0006s26180 (11)	scaffold_6:24453418-24454491(-) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G25560.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os01g52110.5	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr3g135900.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3259.3.S1_at	A	A1TA	POPTR_0006s26185	POPTR_0006s26185 (11)	scaffold_6:24456436-24456806(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3262.1.S1_at	A	A1TS	POPTR_0015s10740	POPTR_0015s10740 (9)	scaffold_15:11570788-11571798(+) (9)	NA	Q5ZI43	Snurportin-1	AT4G24880.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g01130.1	"snurportin-1, putative, expressed"	Medtr3g117620.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3269.1.S1_s_at	A	A1TS	POPTR_0005s02030	POPTR_0005s02030 (11)	scaffold_5:1325957-1326139(+) (11)	NA	Q96321	Importin subunit alpha-1	AT3G06720.2	importin alpha isoform 1 	LOC_Os05g06350.1	"importin subunit alpha, putative, expressed"	Medtr1g100320.1	"Importin alpha-like protein, beta-binding region "	GO:0006606|protein import into nucleus	GO:0008565|protein transporter activity	GO:0005737|cytoplasm||GO:0005643|nuclear pore
Ptp.327.1.S1_at	A	A1TS	POPTR_0001s10940	POPTR_0001s10940 (9)	scaffold_1:8485237-8486898(+) (9)	NA	Q9SGW3	26S proteasome non-ATPase regulatory subunit RPN12A	AT1G64520.1	regulatory particle non-ATPase 12A 	LOC_Os07g25420.1	"26S proteasome non-ATPase regulatory subunit 8, putative, expressed"	Medtr1g020820.1	SAC3/GANP; 26S proteasome non-ATPase regulatory subunit Nin1/mts3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3277.1.S1_s_at	A	A2TS	POPTR_0007s05890	POPTR_0007s05910 (11)//POPTR_0007s05890 (11)	scaffold_7:4055868-4056412(+) (11)//scaffold_7:4067154-4067699(+) (11)	NA	P24792	L-ascorbate oxidase	AT4G39830.1	Cupredoxin superfamily protein 	LOC_Os09g20090.1	"L-ascorbate oxidase precursor, putative, expressed"	Medtr4g140440.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.328.1.A1_at	A	A1TS	POPTR_0003s12670	POPTR_0003s12670 (10)	scaffold_3:13187718-13188581(+) (10)	NA	P41230	Lysine-specific demethylase 5C	AT1G63490.1	transcription factor jumonji (jmjC) domain-containing protein 	LOC_Os05g23670.1	"transcription factor jumonji, putative, expressed"	Medtr5g010400.1	"transcription factor jumonji, related "	NA	NA	GO:0005634|nucleus
Ptp.3281.1.S1_at	A	A1TS	POPTR_0006s27320	POPTR_0006s27320 (11)	scaffold_6:25264933-25266153(+) (11)	NA	Q8VY97	UPF0480 protein At4g32130	AT2G25310.1	Protein of unknown function (DUF2012) 	LOC_Os06g43650.2	"secreted salivary protein, putative, expressed"	Medtr3g137720.1	Carbohydrate-binding-like fold 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3282.1.A1_s_at	A	A1TS	POPTR_0004s18610	POPTR_0004s18610 (11)	scaffold_4:18446799-18447141(-) (11)	NA	Q39108	"Geranylgeranyl pyrophosphate synthase-related protein, chloroplastic"	AT4G38460.1	geranylgeranyl reductase 	LOC_Os02g44780.3	"polyprenyl synthetase, putative, expressed"	AC146550_1.1	Polyprenyl synthetase AC146550.40 4-1850 E EGN_Mt090430 200	GO:0008299|isoprenoid biosynthetic process	NA	NA
Ptp.3284.1.S1_at	A	A1TS	POPTR_0003s05000	POPTR_0003s05000 (10)	scaffold_3:6152655-6154246(+) (10)	NA	Q9CA86	Peroxisome assembly protein 2	AT1G79810.1	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g19480.1	"peroxisome assembly protein, putative, expressed"	Medtr8g015150.1	"Zinc finger, RING-type; Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
Ptp.3284.1.S1_s_at	A	A2TS	POPTR_0001s18670	POPTR_0003s05000 (11)//POPTR_0001s18670 (11)	scaffold_1:15755451-15756832(-) (11)//scaffold_3:6152570-6153984(+) (11)	NA	Q9CA86	Peroxisome assembly protein 2	AT1G79810.1	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein 	LOC_Os05g19480.1	"peroxisome assembly protein, putative, expressed"	Medtr8g015150.1	"Zinc finger, RING-type; Pex2 / Pex12, N-terminal "	GO:0007031|peroxisome organization	NA	GO:0005778|peroxisomal membrane
Ptp.3285.1.S1_at	A	A1TS	POPTR_0016s03740	POPTR_0016s03740 (11)	scaffold_16:2080611-2081810(-) (11)	NA	P94111	Strictosidine synthase 1	AT3G57030.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g53950.1	"strictosidine synthase, putative, expressed"	Medtr2g104630.1	"Strictosidine synthase; TolB, C-terminal "	GO:0009058|biosynthetic process	GO:0016844|strictosidine synthase activity	NA
Ptp.3289.1.A1_at	A	A1TS	POPTR_0004s02500	POPTR_0004s02500 (9)	scaffold_4:1652711-1653266(+) (9)	POPTR_0004s01260 (6)	Q9M0X5	Cysteine-rich receptor-like protein kinase 25	AT4G05200.1	cysteine-rich RLK (RECEPTOR-like protein kinase) 25 	LOC_Os07g35580.1	"TKL_IRAK_DUF26-lc.20 - DUF26 kinases have homology to DUF26 containing loci, expressed"	AC235009_57.1	Tyrosine protein kinase AC235009.1 245586-242593 E EGN_Mt090430 200	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.329.1.S1_s_at	A	A1TS	POPTR_0016s02020	POPTR_0016s02020 (11)	scaffold_16:957255-957679(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
Ptp.329.2.S1_at	A	A1MS	POPTR_0016s02020	POPTR_0016s02020 (11)	scaffold_16:955916-955979(+) (11)	NA	NA	NA	AT2G32240.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). 	LOC_Os04g52460.1	"retrotransposon protein, putative, unclassified, expressed"	Medtr4g103590.1	tRNA-binding arm 	GO:0016032|viral reproduction	NA	GO:0016020|membrane
Ptp.3290.2.S1_a_at	A	A1TS	POPTR_0007s07760	POPTR_0007s07760 (11)	scaffold_7:6181830-6181870(-) (11)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.3290.3.S1_at	A	A1MS	POPTR_0007s07760	POPTR_0007s07760 (10)	scaffold_7:6181696-6181835(-) (10)	NA	NA	NA	AT5G23130.1	Peptidoglycan-binding LysM domain-containing protein 	LOC_Os10g34420.1	"lysM domain containing protein, putative, expressed"	NA	NA	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.3291.1.A1_s_at	A	A1TS	POPTR_0010s21460	POPTR_0010s21460 (11)	scaffold_10:18726190-18728063(-) (11)	NA	NA	NA	AT5G59613.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). 	LOC_Os03g40920.1	expressed protein	Medtr2g114440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3293.1.S1_s_at	A	A2TS	POPTR_0002s06660	POPTR_0002s06660 (11)//POPTR_0005s21660 (11)	scaffold_2:4469169-4469218(-) (11)//scaffold_5:20770129-20770178(+) (11)	NA	Q6ICX4	Polypyrimidine tract-binding protein homolog 3	AT1G43190.3	polypyrimidine tract-binding protein 3 	LOC_Os05g36120.1	"polypyrimidine tract-binding protein, putative, expressed"	Medtr1g124970.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3295.1.S1_at	A	A1TS	POPTR_0013s01710	POPTR_0013s01710 (9)	scaffold_13:970945-973497(-) (9)	NA	NA	NA	AT3G05545.1	RING/U-box superfamily protein 	LOC_Os05g06270.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g099900.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3296.1.S1_s_at	A	A1TS	POPTR_0007s14960	POPTR_0007s14960 (11)	scaffold_14:976708-976756(-) (10)//scaffold_7:14631120-14631686(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.3296.2.S1_s_at	A	A1TS	POPTR_0007s14960	POPTR_0007s14960 (11)	scaffold_7:14628721-14630168(-) (11)	NA	P44573	Oligopeptidase A	AT5G65620.1	Zincin-like metalloproteases family protein 	LOC_Os02g58340.1	"oligopeptidase, putative, expressed"	Medtr5g032430.1	"Peptidase M3A and M3B, thimet/oligopeptidase F "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	NA
Ptp.3298.1.A1_s_at	A	A1TS	POPTR_0009s03020	POPTR_0009s03020 (11)	scaffold_9:3741311-3741943(+) (11)	NA	Q9ZPW9	Non-specific lipid-transfer protein 8	AT2G18370.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os06g34840.1	"LTPL5 - Protease inhibitor/seed storage/LTP family protein precursor, putative"	Medtr2g080460.1	Plant lipid transfer protein/Par allergen 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.33.1.S1_at	A	A1TS	POPTR_0010s06700	POPTR_0010s06700 (11)	scaffold_10:7986750-7987008(+) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.33.2.S1_s_at	A	A2TS	POPTR_0008s17840	POPTR_0008s17840 (11)//POPTR_0010s06700 (11)	scaffold_10:7986472-7986674(+) (11)//scaffold_8:11975577-11975779(-) (11)	NA	Q7XUF4	Cyclin-dependent kinase G-2	AT1G67580.2	Protein kinase superfamily protein 	LOC_Os04g41100.5	"cyclin-dependent kinase G-2, putative, expressed"	Medtr3g103490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.330.1.A1_s_at	A	A1TS	POPTR_0003s08300	POPTR_0003s08300 (11)	scaffold_3:9696141-9696527(+) (11)	NA	P40228	Casein kinase II subunit beta	AT5G47080.4	casein kinase II  beta chain 1 	LOC_Os10g41520.2	"casein kinase II subunit beta-4, putative, expressed"	Medtr5g013750.1	"Casein kinase II, regulatory subunit "	NA	GO:0019887|protein kinase regulator activity	GO:0005956|protein kinase CK2 complex
Ptp.3303.1.S1_at	A	A1TS	POPTR_0009s02250	POPTR_0009s02250 (9)	scaffold_9:2967079-2967380(-) (10)	NA	Q9SJ56	BEL1-like homeodomain protein 1	AT2G35940.3	BEL1-like homeodomain 1 	LOC_Os11g06020.1	"homeobox domain containing protein, expressed"	Medtr1g028710.1	POX; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3308.1.S1_s_at	A	A2TS	POPTR_0008s11410	POPTR_0010s02840 (9)//POPTR_0008s11410 (9)	scaffold_10:3337976-3338356(+) (9)//scaffold_8:7247387-7247913(-) (9)	NA	NA	NA	AT3G21550.1	DUF679 domain membrane protein 2 	LOC_Os03g25440.1	expressed protein	Medtr2g025940.1	Protein of unknown function DUF679 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.331.1.S1_at	A	A1TS	POPTR_0014s12440	POPTR_0014s12440 (11)	scaffold_14:9176713-9178589(+) (11)	NA	O22315	Pre-mRNA-splicing factor SF2	AT1G02840.3	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os07g47630.1	"RNA recognition motif containing protein, expressed"	Medtr8g068270.2	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3313.1.S1_s_at	A	A1TS	POPTR_0009s05870	POPTR_0009s05870 (11)	scaffold_9:5838329-5838476(-) (11)	NA	Q9C6I8	Probable nucleolar GTP-binding protein 1	AT1G50920.1	Nucleolar GTP-binding protein 	LOC_Os07g01920.1	"nucleolar GTP-binding protein 1, putative, expressed"	Medtr8g021130.1	"Nucleolar GTP-binding 1; NOG, C-terminal "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3318.1.A1_at	A	A1TS	POPTR_0010s18600	POPTR_0010s18600 (11)	scaffold_10:16803959-16804375(-) (11)	NA	Q9FIW4	Beta-glucosidase 42	AT5G36890.1	beta glucosidase 42 	LOC_Os01g67220.2	"Os1bglu4 - beta-glucosidase-like protein without signal sequence, expressed"	Medtr3g040460.1	"Glycoside hydrolase, family 1 "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3320.1.S1_at	A	A1TS	POPTR_0010s17190	POPTR_0010s17190 (11)	scaffold_10:15889084-15890854(-) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
Ptp.3320.1.S1_s_at	A	A1TS	POPTR_0010s17190	POPTR_0010s17190 (11)	scaffold_10:15888823-15888938(-) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
Ptp.3320.1.S1_x_at	A	A1TS	POPTR_0010s17190	POPTR_0010s17190 (11)	scaffold_10:15888861-15890854(-) (11)	NA	Q9D1D4	Transmembrane emp24 domain-containing protein 10	AT1G69460.1	emp24/gp25L/p24 family/GOLD family protein 	LOC_Os07g43890.1	"emp24/gp25L/p24 family protein, putative, expressed"	Medtr6g013290.1	emp24/gp25L/p24 	GO:0006810|transport	NA	GO:0016021|integral to membrane
Ptp.3322.1.S1_at	A	A1TS	POPTR_0007s11530	POPTR_0007s11530 (10)	scaffold_7:11892034-11892309(-) (10)	NA	Q9FKZ1	Probable disease resistance protein At5g66900	AT5G66900.1	Disease resistance protein (CC-NBS-LRR class) family 	LOC_Os12g39620.2	"disease resistance protein, putative, expressed"	Medtr5g018040.1	NB-ARC; Arabidopsis broad-spectrum mildew resistance 	NA	GO:0005515|protein binding	NA
Ptp.3323.1.S1_s_at	A	A1TS	POPTR_0003s15040	POPTR_0003s15040 (11)	scaffold_3:14942532-14943033(+) (11)	NA	Q8VY90	Ethylene-responsive transcription factor ERF105	AT5G51190.1	Integrase-type DNA-binding superfamily protein 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3324.1.A1_a_at	A	A1TS	POPTR_0010s07490	POPTR_0010s07490 (11)	scaffold_10:8540568-8540841(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3325.1.S1_at	A	A1TS	POPTR_0001s04240	POPTR_0001s04240 (11)	scaffold_1:3349479-3350363(+) (11)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3325.3.A1_at	A	A1TA	POPTR_0003s21120	POPTR_0003s21120 (9)	scaffold_3:19401606-19401896(-) (9)	NA	Q38850	Transcription repressor MYB5	AT3G13540.1	myb domain protein 5 	LOC_Os01g50110.1	"MYB family transcription factor, putative, expressed"	Medtr3g105680.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3327.1.S1_at	A	A1TS	POPTR_0015s14640	POPTR_0015s14640 (11)	scaffold_15:14167013-14167275(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010220.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.3327.1.S1_s_at	A	A1TS	POPTR_0015s14640	POPTR_0015s14640 (11)	scaffold_15:14167291-14167446(+) (11)	NA	P17407	21 kDa protein	AT5G62350.1	Plant invertase/pectin methylesterase inhibitor superfamily protein 	LOC_Os06g49760.1	"invertase/pectin methylesterase inhibitor family protein, putative, expressed"	Medtr3g010220.1	"Pectinesterase inhibitor; TonB box, N-terminal "	NA	GO:0030599|pectinesterase activity||GO:0004857|enzyme inhibitor activity	NA
Ptp.3328.1.S1_s_at	A	A1TS	POPTR_0016s03220	POPTR_0016s03220 (11)	scaffold_16:1639226-1639468(-) (11)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3328.2.S1_at	A	A1TS	POPTR_0016s03220	POPTR_0016s03220 (10)	scaffold_16:1641148-1641311(-) (10)	NA	P14233	TGACG-sequence-specific DNA-binding protein TGA-1B (Fragment)	AT2G40950.1	Basic-leucine zipper (bZIP) transcription factor family protein 	LOC_Os05g34050.1	"bZIP transcription factor domain containing protein, expressed"	Medtr7g105820.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.333.1.S1_at	A	A1TS	POPTR_0003s11700	POPTR_0003s11700 (11)	scaffold_3:12496106-12496451(-) (11)	NA	Q9SZ69	Zinc finger A20 and AN1 domain-containing stress-associated protein 7	AT4G12040.2	A20/AN1-like zinc finger family protein 	LOC_Os07g07350.3	"zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed"	Medtr4g087220.1	"Zinc finger, AN1-type; Zinc finger, A20-type "	NA	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.3332.1.S1_at	A	A1TS	POPTR_0006s22070	POPTR_0006s22070 (11)	scaffold_6:21091571-21091964(+) (11)	NA	Q9C615	Putative syntaxin-24	AT2G35980.1	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family 	LOC_Os04g58850.1	"harpin-induced protein 1 domain containing protein, expressed"	Medtr8g139130.1	Harpin-induced 1 	GO:0009269|response to desiccation	NA	NA
Ptp.3333.1.A1_s_at	A	A1TS	POPTR_0001s09830	POPTR_0001s09830 (11)	scaffold_1:7586231-7587323(+) (11)	NA	P92947	"Monodehydroascorbate reductase, chloroplastic"	AT1G63940.2	monodehydroascorbate reductase 6 	LOC_Os08g05570.1	"monodehydroascorbate reductase, putative, expressed"	NA	NA	GO:0055114|oxidation reduction	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.3335.1.S1_s_at	A	A1TS	POPTR_0006s04930	POPTR_0006s04930 (11)	scaffold_6:3440426-3440775(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3336.1.S1_s_at	A	A1TS	POPTR_0012s07600	POPTR_0012s07600 (11)	scaffold_12:8509240-8511832(+) (11)	NA	NA	NA	NA	NA	LOC_Os03g60950.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3337.1.S1_s_at	A	A1TS	POPTR_0019s13880	POPTR_0019s13880 (9)	scaffold_19:14754039-14754434(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3338.1.S1_s_at	A	A1TS	POPTR_0005s10830	POPTR_0005s10830 (11)	scaffold_5:7800504-7801151(+) (11)	NA	Q2MHE4	Serine/threonine-protein kinase HT1	AT4G35780.1	ACT-like protein tyrosine kinase family protein 	LOC_Os09g37230.1	"protein kinase family protein, putative, expressed"	Medtr5g023120.1	Protein kinase; Amino acid-binding ACT 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0016597|amino acid binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3339.1.S1_s_at	A	A1TS	POPTR_0011s12650	POPTR_0011s12650 (11)	scaffold_11:15356554-15357515(+) (11)	NA	Q9FL69	Probable ADP-ribosylation factor GTPase-activating protein AGD5	AT5G54310.1	ARF-GAP domain 5 	LOC_Os07g37650.1	"GTPase-activating protein, putative, expressed"	Medtr2g095270.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.334.1.A1_at	A	A1TS	POPTR_0019s03750	POPTR_0019s03750 (11)	scaffold_19:3847147-3847522(-) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT5G29000.2	Homeodomain-like superfamily protein 	LOC_Os03g21240.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.334.2.S1_at	A	A1TS	POPTR_0019s03750	POPTR_0019s03750 (9)	scaffold_19:3850162-3850560(-) (9)	NA	Q9SAK5	Myb family transcription factor APL	AT5G29000.2	Homeodomain-like superfamily protein 	LOC_Os03g21240.1	"myb-like DNA-binding domain containing protein, expressed"	Medtr7g116700.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3340.1.S1_s_at	A	A1TS	POPTR_0012s12900	POPTR_0012s12900 (11)	scaffold_12:13272751-13273358(+) (11)	NA	Q94AI4	Methyltransferase-like protein 1	AT4G09980.1	Methyltransferase MT-A70 family protein 	LOC_Os10g31030.1	"EMB1691, putative, expressed"	Medtr1g126680.1	N-6 Adenine-specific DNA methylase 	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008168|methyltransferase activity	NA
Ptp.3342.1.A1_at	A	A1TS	POPTR_0002s01830	POPTR_0002s01830 (11)	scaffold_2:973269-973454(-) (11)	NA	Q3ECD0	"RNA pseudourine synthase 2, chloroplastic"	AT1G76050.2	Pseudouridine synthase family protein 	LOC_Os06g50360.1	"pseudouridine synthase family protein, putative, expressed"	Medtr3g157130.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.3342.2.S1_at	A	A1TS	POPTR_0002s01830	POPTR_0002s01830 (11)	scaffold_2:974069-974868(-) (11)	NA	Q3ECD0	"RNA pseudourine synthase 2, chloroplastic"	AT1G76050.2	Pseudouridine synthase family protein 	LOC_Os06g50360.1	"pseudouridine synthase family protein, putative, expressed"	Medtr3g157130.1	"Pseudouridine synthase, RluD "	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.3351.1.S1_s_at	A	A1TS	POPTR_0013s12680	POPTR_0013s12680 (11)	scaffold_13:13383448-13383488(+) (11)	NA	Q9P7W0	OPA3-like protein	AT1G28510.1	Optic atrophy 3 protein (OPA3) 	LOC_Os02g20844.1	expressed protein	Medtr2g018330.1	Optic atrophy 3 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3352.1.S1_s_at	A	A1TS	POPTR_0006s10980	POPTR_0006s10980 (11)	scaffold_6:8342022-8342414(+) (11)	NA	Q148K0	Transcription elongation factor A protein 2	AT2G38560.1	transcript elongation factor IIS 	LOC_Os03g60130.2	"transcription elongation factor protein, putative, expressed"	NA	NA	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.3353.1.S1_s_at	A	A1TS	POPTR_0002s11310	POPTR_0002s11310 (11)	scaffold_2:8364247-8364638(-) (11)	NA	Q9FKP0	"50S ribosomal protein 6, chloroplastic"	AT5G17870.1	plastid-specific 50S ribosomal protein 6 	LOC_Os11g34940.1	"plastid-specific 50S ribosomal protein 6, chloroplast precursor, putative, expressed"	Medtr3g127970.1	"Plastid-specific 50S ribosomal protein 6, chloroplast precursor, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3354.1.A1_s_at	A	A1TS	POPTR_0005s00710	POPTR_0005s00710 (11)	scaffold_5:310185-310871(-) (11)	NA	P51137	Glycogen synthase kinase-3 homolog MsK-1	AT5G26751.1	shaggy-related kinase 11 	LOC_Os01g14860.3	"CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed"	Medtr1g102860.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3359.1.S1_at	A	A1TS	POPTR_0019s00230	POPTR_0019s00230 (10)	scaffold_19:32095-32706(+) (10)//scaffold_261:14723-15341(+) (10)	NA	Q96282	Chloride channel protein CLC-c	AT5G49890.1	chloride channel C 	LOC_Os04g36560.2	"chloride channel protein, putative, expressed"	Medtr6g071480.1	"Cl- channel, voltage gated; Glycine betaine/L-proline transport ATP-binding subunit "	GO:0006821|chloride transport	GO:0005247|voltage-gated chloride channel activity	GO:0016020|membrane
Ptp.336.1.S1_at	A	A1TS	POPTR_0019s15110	POPTR_0019s15110 (11)	scaffold_19:15705582-15705759(-) (11)	NA	O24312	Trans-cinnamate 4-monooxygenase	AT2G30490.1	cinnamate-4-hydroxylase 	LOC_Os01g60450.1	"cytochrome P450, putative"	Medtr5g083280.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3362.1.A1_s_at	A	A1TS	POPTR_0009s14520	POPTR_0009s14520 (11)	scaffold_9:11373847-11375072(+) (11)	NA	Q4V8J4	Glycerol-3-phosphate acyltransferase 3	AT5G60620.1	glycerol-3-phosphate acyltransferase 9 	LOC_Os07g34730.1	"acyltransferase, putative, expressed"	Medtr8g129160.1	Phospholipid/glycerol acyltransferase 	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.3363.1.S1_s_at	A	A1TS	POPTR_0010s02390	POPTR_0010s02390 (11)	scaffold_10:2760765-2761358(-) (11)	NA	Q6A332	Protein ALWAYS EARLY 3	AT3G21430.2	DNA binding 	LOC_Os03g43800.1	"DIRP family protein, putative, expressed"	Medtr8g139200.1	DIRP; Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3364.1.S1_at	A	A1MS	POPTR_0006s03850	POPTR_0006s03850 (11)	scaffold_6:2588436-2588826(+) (11)	NA	Q5ZJQ8	Ubiquitin-associated domain-containing protein 2	AT3G56740.1	Ubiquitin-associated (UBA) protein 	LOC_Os01g16330.1	"OsRhmbd2 - Putative Rhomboid homologue, expressed"	Medtr7g106540.1	UBA-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3365.2.A1_s_at	A	A1TS	POPTR_0013s01760	POPTR_0013s01760 (11)	scaffold_13:1000947-1001734(-) (11)	NA	Q3UDW8	Heparan-alpha-glucosaminide N-acetyltransferase	AT5G27730.1	Protein of unknown function (DUF1624) 	LOC_Os01g70550.1	"heparan-alpha-glucosaminide N-acetyltransferase, putative, expressed"	Medtr7g138520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3367.1.S1_at	A	A1TS	POPTR_0011s14020	POPTR_0011s14020 (11)	scaffold_11:16615852-16615898(+) (11)	NA	NA	NA	AT5G54855.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os02g21280.1	"POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr3g068130.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3367.1.S1_s_at	A	A1TS	POPTR_0011s14020	POPTR_0011s14020 (11)	scaffold_11:16614061-16615649(+) (11)	NA	NA	NA	AT5G54855.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os02g21280.1	"POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed"	Medtr3g068130.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3368.1.S1_at	A	A1TS	POPTR_0012s13510	POPTR_0012s13510 (9)	scaffold_12:13637300-13637687(-) (9)	NA	Q9M2Z4	Membrane steroid-binding protein 2	AT3G48890.1	membrane-associated progesterone binding protein 3 	LOC_Os10g35870.1	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	Medtr6g059110.1	Cytochrome b5 	NA	GO:0020037|heme binding	NA
Ptp.337.1.A1_at	A	A1TS	POPTR_0016s05240	POPTR_0016s05240 (11)	scaffold_16:3195050-3195548(+) (11)	NA	Q9LT35	Serine/threonine-protein kinase Nek6	AT3G20860.1	NIMA-related kinase 5 	LOC_Os12g41180.1	"LSTK-1-like kinase, putative, expressed"	Medtr7g111030.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3370.1.S1_at	A	A1TS	POPTR_0006s09650	POPTR_0006s09650 (11)	scaffold_6:7088952-7089911(-) (11)	NA	Q9Y2M2	Uncharacterized protein C3orf32	AT2G38000.1	chaperone protein dnaJ-related 	LOC_Os05g25210.1	expressed protein	Medtr2g085150.1	"Uncharacterized protein C3orf32, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3372.1.S1_at	A	A1TS	POPTR_0006s22410	POPTR_0006s22410 (11)	scaffold_6:21428185-21428485(+) (11)	NA	NA	NA	AT3G11591.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3373.1.A1_at	A	A1TS	POPTR_0013s04480	POPTR_0013s04480 (11)	scaffold_13:3074409-3074955(-) (11)	NA	NA	NA	AT5G28910.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28960.1); Has 82 Blast hits to 80 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os02g56500.1	expressed protein	Medtr1g093750.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3375.1.S1_at	A	A1TS	POPTR_0016s02760	POPTR_0016s02760 (11)	scaffold_16:1368835-1369742(+) (11)	POPTR_1436s00210 (7)	P11891	"50S ribosomal protein 5, chloroplastic"	NA	NA	NA	NA	Medtr7g105340.1	"Plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3375.2.S1_at	A	A2MS	POPTR_0016s02690	POPTR_0016s02690 (11)//POPTR_1436s00210 (10)	scaffold_1436:4931-5042(+) (10)//scaffold_16:1332944-1333055(+) (11)//scaffold_16:1355501-1355598(+) (9)	POPTR_0016s02760 (7)	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3377.1.S1_at	A	A1TS	POPTR_0007s14280	POPTR_0007s14280 (11)	scaffold_7:14115408-14115711(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G65470.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr5g033490.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3377.1.S1_s_at	A	A1TS	POPTR_0007s14280	POPTR_0007s14280 (11)	scaffold_7:14114287-14115577(-) (11)	NA	Q8W486	DUF246 domain-containing protein At1g04910	AT5G65470.1	O-fucosyltransferase family protein 	LOC_Os09g24570.1	"growth regulator related protein, putative, expressed"	Medtr5g033490.1	Hypothetical plant protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3380.1.S1_at	A	A1TS	POPTR_0006s14100	POPTR_0006s14100 (11)	scaffold_6:11404109-11404341(+) (11)	NA	Q84QC2	Ethylene-responsive transcription factor ERF017	AT1G19210.1	Integrase-type DNA-binding superfamily protein 	LOC_Os06g09790.1	"ethylene-responsive transcription factor, putative, expressed"	Medtr2g050000.1	Pathogenesis-related transcriptional factor and ERF; Ribosomal protein S12/S23 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3381.1.S1_at	A	A1TS	POPTR_0012s07980	POPTR_0012s07980 (11)	scaffold_12:8968365-8968764(-) (11)	NA	NA	NA	AT1G24450.1	Ribonuclease III family protein 	LOC_Os03g63740.1	"NFD2, putative, expressed"	Medtr8g125490.1	Ribonuclease III 	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	GO:0004525|ribonuclease III activity||GO:0003723|RNA binding	NA
Ptp.3382.1.S1_at	A	A1TS	POPTR_0018s00800	POPTR_0018s00800 (11)	scaffold_18:699232-699747(-) (11)	NA	Q8GZ63	Pentatricopeptide repeat-containing protein At5g25630	AT5G25630.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os01g12810.4	"retrotransposon protein, putative, unclassified, expressed"	Medtr1g009410.1	Pentatricopeptide repeat 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3384.1.A1_at	A	A1TS	POPTR_0001s24610	POPTR_0001s24610 (10)	scaffold_1:23859687-23860153(-) (10)	NA	O95208	Epsin-2	AT3G46540.1	ENTH/VHS family protein 	LOC_Os01g62370.1	"ENTH domain containing protein, expressed"	Medtr1g090360.1	"Epsin, N-terminal; ENTH/VHS "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3386.1.S1_s_at	A	A1TS	POPTR_0018s01300	POPTR_0018s01300 (11)	scaffold_18:1267030-1267369(+) (11)	NA	O48780	3-ketoacyl-CoA synthase 11	AT2G26640.1	3-ketoacyl-CoA synthase 11 	LOC_Os06g39750.3	"3-ketoacyl-CoA synthase, putative, expressed"	Medtr8g119040.1	"Ribosomal protein S10; Chalcone and stilbene synthases, C-terminal; Very-long-chain 3-ketoacyl-CoA synthase "	GO:0006633|fatty acid biosynthetic process||GO:0044283|small molecule biosynthetic process||GO:0044281|small molecule metabolic process	GO:0008415|acyltransferase activity	GO:0016020|membrane
Ptp.339.1.S1_at	A	A1TS	POPTR_0011s10100	POPTR_0011s10100 (11)	scaffold_11:12614445-12614628(-) (11)	NA	P07245	"C-1-tetrahydrofolate synthase, cytoplasmic"	AT3G12290.1	Amino acid dehydrogenase family protein 	LOC_Os05g05830.1	"bifunctional protein folD, putative, expressed"	Medtr7g130340.1	Tetrahydrofolate dehydrogenase/cyclohydrolase 	GO:0044281|small molecule metabolic process||GO:0009396|folic acid and derivative biosynthetic process	GO:0003824|catalytic activity	NA
Ptp.3391.1.S1_at	A	A1TS	POPTR_0010s08340	POPTR_0010s08340 (11)	scaffold_10:9295749-9296122(+) (11)	NA	Q9LSW9	RING-H2 finger protein ATL16	AT5G43420.1	RING/U-box superfamily protein 	LOC_Os02g57460.1	"RING-H2 finger protein ATL5G, putative, expressed"	Medtr1g042550.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3392.1.A1_s_at	A	A1MS	POPTR_0001s33660	POPTR_0001s33660 (11)	scaffold_1:31856743-31857032(-) (11)	NA	NA	NA	AT3G27030.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os11g30360.1	expressed protein	Medtr4g147160.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3393.1.A1_at	A	A1TS	POPTR_0003s20010	POPTR_0003s20010 (11)	scaffold_3:18633822-18635722(+) (11)	NA	Q5PQR5	U3 small nucleolar ribonucleoprotein protein IMP4	AT1G63780.1	Ribosomal RNA processing Brix domain protein 	LOC_Os08g05880.1	"Brix domain containing protein, putative, expressed"	Medtr3g020870.1	Brix 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3394.1.S1_at	A	A1TS	POPTR_0010s05940	POPTR_0010s05940 (11)	scaffold_10:7373293-7373687(+) (11)	NA	Q9LY87	E3 ubiquitin-protein ligase RGLG2	AT5G14420.2	RING domain ligase2 	LOC_Os12g19030.1	"copine, putative, expressed"	Medtr3g102530.1	"Zinc finger, RING-type; von Willebrand factor, type A; Copine "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3396.1.S1_s_at	A	A1MS	POPTR_0005s18240	POPTR_0005s18240 (11)	scaffold_5:16363694-16364071(+) (11)	NA	O22042	Mitogen-activated protein kinase kinase kinase 3	AT5G67080.1	mitogen-activated protein kinase kinase kinase 19 	LOC_Os02g21700.1	"STE_MEKK_ste11_MAP3K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g017070.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3399.1.S1_at	A	A1TS	POPTR_0012s03880	POPTR_0012s03880 (11)	scaffold_12:3109027-3110235(+) (11)	NA	Q9C9X3	Annexin D5	AT1G68090.1	annexin 5 	LOC_Os09g23160.1	"annexin, putative, expressed"	Medtr4g154520.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
Ptp.34.1.A1_at	A	A2TS	POPTR_0014s07630	POPTR_0014s07630 (11)//POPTR_0014s07610 (10)	scaffold_14:5714947-5715115(+) (11)//scaffold_14:5722313-5722481(+) (11)	NA	Q1W374	Phosphomannomutase	AT2G45790.1	phosphomannomutase 	LOC_Os04g58580.1	"phosphomannomutase, putative, expressed"	Medtr7g084420.1	Eukaryotic phosphomannomutase 	GO:0044283|small molecule biosynthetic process||GO:0034637|cellular carbohydrate biosynthetic process||GO:0019307|mannose biosynthetic process||GO:0044281|small molecule metabolic process	GO:0004615|phosphomannomutase activity	GO:0005737|cytoplasm
Ptp.340.1.A1_s_at	A	A1TS	POPTR_0004s11470	POPTR_0004s11470 (11)	scaffold_4:10199213-10199658(-) (11)	NA	Q9LVP9	Vesicle transport v-SNARE 13	AT5G39510.1	Vesicle transport v-SNARE family protein 	LOC_Os01g51120.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr6g013360.1	Vesicle transport v-SNARE 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane
Ptp.3400.1.S1_s_at	A	A1TS	POPTR_0012s03610	POPTR_0012s03610 (11)	scaffold_12:2838874-2839001(+) (11)	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.3400.2.S1_a_at	A	A1TS	POPTR_0012s03610	POPTR_0012s03610 (10)	scaffold_12:2837835-2838248(+) (10)	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.3401.1.S1_at	A	A1MS	POPTR_0001s22330	POPTR_0001s22330 (9)	scaffold_1:20945125-20945744(-) (9)	NA	O75937	DnaJ homolog subfamily C member 8	AT5G22080.1	Chaperone DnaJ-domain superfamily protein 	LOC_Os03g15480.1	"heat shock protein DnaJ, putative, expressed"	Medtr2g104870.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.3403.1.S1_at	A	A1TS	POPTR_0006s22810	POPTR_0006s22810 (11)	scaffold_6:21715129-21715478(+) (11)	NA	P37107	"Signal recognition particle 54 kDa protein, chloroplastic"	AT5G03940.1	chloroplast signal recognition particle 54 kDa subunit 	LOC_Os11g05556.1	"signal recognition particle 54 kDa protein, putative, expressed"	Medtr7g127650.1	"GTP-binding signal recognition particle SRP54, G-domain "	GO:0006777|Mo-molybdopterin cofactor biosynthetic process||GO:0006614|SRP-dependent cotranslational protein targeting to membrane||GO:0044260|cellular macromolecule metabolic process	GO:0008312|7S RNA binding||GO:0005525|GTP binding||GO:0005515|protein binding	GO:0048500|signal recognition particle
Ptp.3404.1.S1_at	A	A1TS	POPTR_0007s15200	POPTR_0007s15200 (9)	scaffold_7:14812430-14813146(-) (9)	NA	P38605	Cycloartenol synthase	AT2G07050.1	cycloartenol synthase 1 	LOC_Os02g04710.1	"cycloartenol synthase, putative, expressed"	Medtr5g008860.1	Prenyltransferase/squalene oxidase 	NA	GO:0003824|catalytic activity	NA
Ptp.3409.1.S1_at	A	A1MS	POPTR_0002s13960	POPTR_0002s13960 (9)	scaffold_2:10354959-10355194(+) (9)	NA	Q54YW1	ELMO domain-containing protein A	AT3G60260.4	ELMO/CED-12 family protein 	LOC_Os02g43590.1	"ELMO/CED-12 family protein, putative, expressed"	Medtr7g092860.1	"Engulfment and cell motility, ELM "	GO:0006909|phagocytosis||GO:0061024|membrane organization	NA	GO:0005856|cytoskeleton
Ptp.341.1.A1_at	A	A1TS	POPTR_0013s04180	POPTR_0013s04180 (11)	scaffold_13:2797294-2797826(+) (11)	NA	NA	NA	AT3G04560.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 16 growth stages; Has 227 Blast hits to 225 proteins in 83 species: Archae - 0; Bacteria - 17; Metazoa - 98; Fungi - 29; Plants - 51; Viruses - 1; Other Eukaryotes - 31 (source: NCBI BLink). 	LOC_Os02g57500.1	expressed protein	Medtr1g093410.2	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3410.1.S1_at	A	A1TS	POPTR_0018s12980	POPTR_0018s12980 (11)	scaffold_18:13436358-13436636(-) (11)	POPTR_0006s06690 (7)	NA	NA	AT3G15790.1	methyl-CPG-binding domain 11 	LOC_Os12g42550.1	"methyl-CpG binding domain containing protein, putative, expressed"	Medtr8g120840.1	Methyl-CpG binding 	NA	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.3421.2.S1_s_at	A	A1TS	POPTR_0018s08940	POPTR_0018s08940 (11)	scaffold_18:9857800-9858298(+) (11)	NA	Q9ZPI6	Peroxisomal fatty acid beta-oxidation multifunctional protein AIM1	AT4G29010.1	Enoyl-CoA hydratase/isomerase family 	LOC_Os02g17390.1	"3-hydroxyacyl-CoA dehydrogenase, putative, expressed"	Medtr6g099470.1	IQ calmodulin-binding region; Enoyl-CoA hydratase/isomerase 	GO:0006631|fatty acid metabolic process||GO:0044281|small molecule metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.343.1.A1_at	A	A1TS	POPTR_0009s11610	POPTR_0009s11610 (9)	scaffold_9:9607161-9607634(-) (9)	NA	Q93VG8	UPF0326 protein At4g17486	AT1G47740.2	PPPDE putative thiol peptidase family protein 	LOC_Os03g10200.1	"ethylene-responsive element-binding protein, putative, expressed"	Medtr3g138040.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3430.1.S1_at	A	A1TS	POPTR_0009s01990	POPTR_0009s01990 (11)	scaffold_9:2562518-2563644(+) (11)	NA	Q9SE43	Homeobox-leucine zipper protein REVOLUTA	AT5G60690.1	Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 	LOC_Os03g01890.1	"START domain containing protein, expressed"	Medtr2g110200.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3435.1.S1_s_at	A	A2TS	POPTR_0002s07960	POPTR_0002s07960 (11)//POPTR_0002s08040 (9)	scaffold_2:5496264-5496438(-) (11)//scaffold_2:5531316-5531488(-) (10)//scaffold_2:5562015-5562127(+) (9)	NA	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3435.2.S1_s_at	A	A2TS	POPTR_0002s07960	POPTR_0002s08040 (11)//POPTR_0002s07960 (11)	scaffold_2:5495564-5496000(-) (11)//scaffold_2:5562391-5562831(+) (11)	POPTR_0005s20400 (6)	Q39134	Amino acid permease 3	AT1G77380.1	amino acid permease 3 	LOC_Os05g34980.1	"amino acid transporter, putative, expressed"	Medtr4g143430.1	"amino acid carrier, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3438.1.S1_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20852026-20853371(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
Ptp.3438.2.S1_s_at	A	A1TS	POPTR_0004s21870	POPTR_0004s21870 (11)	scaffold_4:20856962-20857175(-) (11)	NA	NA	NA	AT2G17410.1	ARID/BRIGHT DNA-binding domain-containing protein 	LOC_Os06g41730.2	"ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed"	Medtr5g024850.1	AT-rich interaction region; Heat shock protein Hsp20 	NA	GO:0003677|DNA binding	GO:0005622|intracellular
Ptp.3439.1.S1_s_at	A	A1TS	POPTR_0010s02090	POPTR_0010s02090 (9)	scaffold_10:2418983-2419723(-) (11)	NA	Q9UTN6	Chromatin structure-remodeling complex subunit snf21	AT2G28290.3	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os05g05230.1	expressed protein	Medtr8g139730.1	"SNF2-related; Helicase, C-terminal; ; "	NA	GO:0016787|hydrolase activity||GO:0003677|DNA binding||GO:0005524|ATP binding	NA
Ptp.3440.1.S1_at	A	A1TS	POPTR_0006s24400	POPTR_0006s24400 (9)	scaffold_6:23013320-23013809(-) (9)	NA	Q43866	"Beta-fructofuranosidase, insoluble isoenzyme CWINV1"	AT3G13790.2	Glycosyl hydrolases family 32 protein 	LOC_Os04g33720.1	"glycosyl hydrolases, putative, expressed"	Medtr1g019970.1	"Glycoside hydrolase, family 32; Concanavalin A-like lectin/glucanase; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3443.1.S1_at	A	A1MS	POPTR_0012s09080	POPTR_0012s09080 (10)	scaffold_12:10154321-10154697(-) (10)	NA	Q14149	MORC family CW-type zinc finger protein 3	AT1G19100.1	"Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein "	LOC_Os01g36840.1	"ATP-binding region, ATPase-like domain containing protein, expressed"	Medtr3g114270.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3445.1.S1_at	A	A1MS	POPTR_0014s17010	POPTR_0014s17010 (10)	scaffold_14:13197910-13198415(+) (10)	NA	Q8LPQ9	Flowering time control protein FPA	AT4G12640.1	RNA recognition motif (RRM)-containing protein 	LOC_Os09g12730.2	"RNA recognition motif containing protein, expressed"	Medtr3g111300.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3450.1.S1_at	A	A1TS	POPTR_0013s15730	POPTR_0013s15730 (11)	scaffold_13:15635349-15635807(-) (11)	NA	Q9LEV3	"Uncharacterized protein At5g10860, mitochondrial"	AT5G10860.1	Cystathionine beta-synthase (CBS) family protein 	LOC_Os03g52690.4	"CBS domain containing membrane protein, putative, expressed"	Medtr5g083950.2	CBS 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3452.1.A1_s_at	A	A1TS	POPTR_0008s19980	POPTR_0008s19980 (11)	scaffold_8:13806234-13806854(-) (11)	NA	NA	NA	NA	NA	LOC_Os12g35060.3	expressed protein	Medtr4g142730.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3456.1.S1_at	A	A1TS	POPTR_0001s13700	POPTR_0001s13700 (9)	scaffold_1:10791833-10792697(+) (9)	NA	Q9FYG2	Calmodulin-binding transcription activator 4	AT1G67310.1	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains 	LOC_Os04g31900.1	"calmodulin-binding transcription activator 4, putative, expressed"	Medtr3g104090.1	IQ calmodulin-binding region; Cell surface receptor IPT/TIG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.346.1.S1_s_at	A	A1TS	POPTR_0005s08650	POPTR_0005s08650 (11)	scaffold_5:6018879-6019907(-) (11)	NA	Q9SJ05	"Shikimate kinase, chloroplastic"	AT2G21940.4	shikimate kinase 1 	LOC_Os04g54800.1	"shikimate kinase, putative, expressed"	NA	NA	NA	GO:0004765|shikimate kinase activity||GO:0005524|ATP binding	NA
Ptp.3460.1.S1_s_at	A	A1MS	POPTR_0006s10590	POPTR_0006s10590 (11)	scaffold_6:7923681-7924099(-) (11)	NA	NA	NA	AT5G01710.1	methyltransferases 	LOC_Os07g49210.1	"helicase conserved C-terminal domain containing protein, expressed"	Medtr3g033770.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3461.1.S1_s_at	A	A1TS	POPTR_0010s06810	POPTR_0010s06810 (11)	scaffold_10:8067504-8068066(-) (11)	NA	O48700	U-box domain-containing protein 6	AT1G24330.1	ARM repeat superfamily protein 	LOC_Os01g67500.1	"armadillo/beta-catenin repeat family protein, putative, expressed"	Medtr3g103550.1	U box 	GO:0044260|cellular macromolecule metabolic process||GO:0016567|protein ubiquitination	GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.3464.1.S1_at	A	A1TS	POPTR_0003s16160	POPTR_0003s16160 (9)	scaffold_3:15764190-15764670(-) (9)	NA	NA	NA	AT5G13310.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os04g32580.1	expressed protein	Medtr7g097090.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3465.2.S1_s_at	A	A1TS	POPTR_0016s03770	POPTR_0016s03770 (11)	scaffold_16:2117498-2117750(-) (11)	NA	P53780	"Cystathionine beta-lyase, chloroplastic"	AT3G57050.1	cystathionine beta-lyase 	LOC_Os06g07960.1	"cystathionine gamma-synthase, putative, expressed"	Medtr7g010560.1	"Cystathionine beta-lyase, related "	GO:0034641|cellular nitrogen compound metabolic process||GO:0006520|cellular amino acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding	NA
Ptp.3466.1.S1_at	A	A1TS	POPTR_0017s03380	POPTR_0017s03380 (9)	scaffold_17:2480635-2481178(+) (9)	NA	Q9LFR1	Probable peptide/nitrate transporter At5g14940	AT5G14940.1	Major facilitator superfamily protein 	LOC_Os06g13210.1	"peptide transporter PTR2, putative, expressed"	Medtr6g009300.1	"TGF-beta receptor, type I/II extracellular region "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3467.1.S1_at	A	A1TS	POPTR_0017s00530	POPTR_0017s00530 (11)	scaffold_17:203276-203667(-) (11)	NA	O54873	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1	AT3G59980.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os04g23820.1	"methionyl-tRNA synthetase, putative, expressed"	Medtr4g106980.1	"t-RNA-binding region; Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; ; ; "	NA	GO:0000049|tRNA binding	NA
Ptp.3468.1.S1_at	A	A1TS	POPTR_0004s04010	POPTR_0004s04010 (9)	scaffold_4:2858386-2858804(+) (9)	NA	Q5YDB6	RNA polymerase II C-terminal domain phosphatase-like 1	AT4G21670.1	C-terminal domain phosphatase-like 1 	LOC_Os02g42600.1	"double-stranded RNA binding motif containing protein, expressed"	Medtr3g024780.1	NLI interacting factor 	NA	GO:0003725|double-stranded RNA binding	GO:0005622|intracellular
Ptp.3469.1.S1_at	A	A2TS	POPTR_0010s01330	POPTR_0010s02110 (11)//POPTR_0010s01330 (11)	scaffold_10:1327502-1329250(+) (11)//scaffold_10:2432984-2434729(-) (11)	NA	P19515	Lipase	AT5G18640.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g30900.1	"lipase precursor, putative, expressed"	Medtr2g025130.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.3469.1.S1_s_at	A	A2TS	POPTR_0010s01330	POPTR_0010s02110 (11)//POPTR_0010s01330 (11)	scaffold_10:1329353-1331539(+) (11)//scaffold_10:2430764-2432881(-) (11)	NA	P19515	Lipase	AT5G18640.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g30900.1	"lipase precursor, putative, expressed"	Medtr2g025130.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.3471.1.A1_s_at	A	A1TS	POPTR_0001s23850	POPTR_0001s23850 (11)	scaffold_1:23233216-23233626(+) (11)	NA	NA	NA	AT2G44300.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g07100.1	"LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr3g105470.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3474.1.S1_at	A	A1TS	POPTR_0011s04640	POPTR_0011s04640 (10)	scaffold_11:4608787-4609523(+) (10)	NA	O04084	Serine carboxypeptidase-like 31	AT1G11080.1	serine carboxypeptidase-like 31 	LOC_Os01g22954.1	"serine carboxypeptidase, putative, expressed"	Medtr2g014510.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3476.1.S1_s_at	A	A1TS	POPTR_0011s00360	POPTR_0011s00360 (11)	scaffold_11:145504-145585(+) (11)	NA	P0CH32	Polyubiquitin 4	AT5G20620.1	ubiquitin 4 	LOC_Os04g53620.2	"ubiquitin family protein, putative, expressed"	Medtr4g110760.4	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3478.1.S1_at	A	A1TS	POPTR_0006s03720	POPTR_0006s03720 (9)	scaffold_6:2492475-2493020(+) (9)	NA	O24160	TGACG-sequence-specific DNA-binding protein TGA-2.1	AT3G12250.2	TGACG motif-binding factor 6 	LOC_Os01g59350.1	"transcription factor, putative, expressed"	Medtr7g106840.1	"bZIP transcription factor, bZIP_1 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3479.1.S1_s_at	A	A1TS	POPTR_0015s05510	POPTR_0015s05510 (11)	scaffold_15:5841178-5841860(-) (11)	NA	Q9WTW5	Solute carrier family 22 member 3	AT1G73220.1	organic cation/carnitine transporter1 	LOC_Os07g37510.1	"organic cation transporter-related, putative"	Medtr4g031840.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.348.1.S1_at	A	A1TS	POPTR_0006s26280	POPTR_0006s26280 (11)	scaffold_6:24527513-24528822(+) (11)	NA	NA	NA	AT5G11440.1	CTC-interacting domain 5 	NA	NA	Medtr1g012800.1	Ubiquitin system component Cue 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3480.1.S1_s_at	A	A1TS	POPTR_0010s16730	POPTR_0010s16730 (11)	scaffold_10:15590239-15590742(-) (11)	NA	Q96558	UDP-glucose 6-dehydrogenase	AT5G15490.1	UDP-glucose 6-dehydrogenase family protein 	LOC_Os12g25700.3	"UDP-glucose 6-dehydrogenase, putative, expressed"	Medtr7g012200.1	"6-phosphogluconate dehydrogenase, C-terminal-like; ; ; ; ; "	GO:0055114|oxidation reduction	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding"	NA
Ptp.3481.1.A1_a_at	A	A1TS	POPTR_0007s10890	POPTR_0007s10890 (11)	scaffold_7:11080259-11080482(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3481.1.A1_at	A	A1TS	POPTR_0007s10890	POPTR_0007s10890 (10)	scaffold_7:11080169-11081074(-) (10)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3481.2.A1_a_at	A	A1TS	POPTR_0007s10890	POPTR_0007s10890 (11)	scaffold_7:11080470-11080624(-) (11)	NA	Q93XX5	PI-PLC X domain-containing protein At5g67130	AT4G36945.1	PLC-like phosphodiesterases superfamily protein 	LOC_Os08g01310.1	"phospholipase C, putative, expressed"	Medtr4g130070.1	"Phosphatidylinositol-specific phospholipase C, X region "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3483.1.S1_s_at	A	A1TS	POPTR_0001s29710	POPTR_0001s29710 (11)	scaffold_1:28349683-28349918(+) (11)	NA	Q9R1C7	Pre-mRNA-processing factor 40 homolog A	AT1G44910.1	pre-mRNA-processing protein 40A 	LOC_Os01g34780.2	"protein binding protein, putative, expressed"	NA	NA	NA	GO:0005515|protein binding	NA
Ptp.3484.1.S1_at	A	A1TS	POPTR_0019s14910	POPTR_0019s14910 (11)	scaffold_19:15551349-15551824(-) (11)	NA	Q9LVL5	Probable serine/threonine-protein kinase WNK4	AT5G58350.1	with no lysine (K) kinase 4 	LOC_Os07g38530.1	"STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed"	Medtr5g083060.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3489.1.S1_at	A	A1TS	POPTR_0006s17900	POPTR_0006s17900 (11)	scaffold_6:16148554-16148759(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.3489.1.S1_s_at	A	A1TS	POPTR_0006s17900	POPTR_0006s17900 (11)	scaffold_6:16148769-16149729(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr2g041640.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.3491.1.S1_s_at	A	A1TS	POPTR_0019s08630	POPTR_0019s08630 (11)	scaffold_19:10161786-10161962(-) (11)	NA	NA	NA	AT3G56360.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os03g52680.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3492.1.S1_s_at	A	A1TS	POPTR_0009s10230	POPTR_0009s10230 (11)	scaffold_9:8837530-8838092(-) (11)	NA	Q6ZQ89	E3 ubiquitin-protein ligase MARCH6	AT4G34100.2	RING/U-box superfamily protein 	LOC_Os06g43210.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g130230.1	"Zinc finger, RING-type; RINGv "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3493.1.S1_s_at	A	A1TS	POPTR_0014s13710	POPTR_0014s13710 (11)	scaffold_14:10049170-10049749(+) (11)	NA	Q9NR19	"Acetyl-coenzyme A synthetase, cytoplasmic"	AT5G36880.2	acetyl-CoA synthetase 	LOC_Os02g32490.1	"AMP-binding enzyme, putative, expressed"	Medtr7g099650.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3494.1.S1_at	A	A1TS	POPTR_0001s28570	POPTR_0001s28570 (10)	scaffold_1:27353757-27355044(+) (10)	NA	Q9LI74	"Protein CHUP1, chloroplastic"	AT1G07120.1	"FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). "	LOC_Os03g18300.1	"chloroplast unusual positioning protein, putative, expressed"	Medtr5g080130.1	"hydroxyproline-rich glycoprotein family protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3497.1.S1_at	A	A1TS	POPTR_0005s27810	POPTR_0005s27810 (11)	scaffold_5:25292408-25292645(-) (11)	NA	Q9I8B3	RNA-binding protein 24-B	AT1G76460.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os02g48340.2	"RNA recognition motif containing protein, putative, expressed"	Medtr3g159840.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3499.1.S1_at	A	A1MS	POPTR_0006s06040	POPTR_0006s06040 (9)	scaffold_6:4297044-4297493(-) (9)	NA	Q8N1E6	F-box/LRR-repeat protein 14	AT1G15740.1	Leucine-rich repeat family protein 	LOC_Os04g42470.4	"regulatory subunit, putative, expressed"	Medtr8g122250.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
Ptp.35.1.A1_at	A	A1TS	POPTR_0005s17670	POPTR_0005s17670 (11)	scaffold_5:15293292-15295510(-) (11)	NA	Q8N5D0	WD and tetratricopeptide repeats protein 1	AT5G10940.2	transducin family protein / WD-40 repeat family protein 	LOC_Os03g08830.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr3g148940.1	WD40-like; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.350.1.A1_at	A	A1TS	POPTR_0001s19190	POPTR_0001s19190 (11)	scaffold_1:16650082-16650258(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.350.1.A1_s_at	A	A1TS	POPTR_0001s19190	POPTR_0001s19190 (11)	scaffold_1:16650201-16650684(-) (11)	NA	P29677	Mitochondrial-processing peptidase subunit alpha	AT1G51980.1	Insulinase (Peptidase family M16) protein 	LOC_Os01g53700.1	"mitochondrial-processing peptidase subunit, mitochondrial precursor, putative, expressed"	Medtr8g016190.1	"; ; Peptidase M16A, coenzyme PQQ biosynthesis protein PqqF "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.3500.1.S1_at	A	A1TS	POPTR_0012s02210	POPTR_0012s02210 (10)	scaffold_12:1853257-1853572(+) (10)	NA	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr4g081470.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3502.2.S1_a_at	A	A1TS	POPTR_0003s02570	POPTR_0003s02570 (11)	scaffold_3:2668835-2669291(+) (11)	NA	Q9SSQ4	Protein FAR1-RELATED SEQUENCE 6	AT1G52520.1	FAR1-related sequence 6 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr2g034270.1	"FAR1; Heavy metal transport/detoxification protein; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3503.1.A1_at	A	A1TS	POPTR_0014s08550	POPTR_0014s08550 (11)	scaffold_14:6355412-6355518(+) (11)	NA	NA	NA	AT1G01490.2	Heavy metal transport/detoxification superfamily protein  	LOC_Os10g38870.1	"heavy metal-associated domain containing protein, expressed"	AC235567_30.1	Heavy metal transport/detoxification protein AC235567.1 97384-100523 F EGN_Mt090430 200	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.3504.1.S1_at	A	A1MS	POPTR_0003s08460	POPTR_0003s08460 (10)	scaffold_3:9876934-9877469(-) (10)	NA	Q9FJR0	Regulator of nonsense transcripts 1 homolog	AT5G47010.1	"RNA helicase, putative "	LOC_Os07g31340.1	"regulator of nonsense transcripts 1, putative, expressed"	Medtr5g014030.1	"Type III restriction enzyme, res subunit "	"GO:0000184|""nuclear-transcribed mRNA catabolic process, nonsense-mediated decay""||GO:0044265|cellular macromolecule catabolic process"	GO:0003677|DNA binding||GO:0005524|ATP binding||GO:0004386|helicase activity||GO:0008270|zinc ion binding	GO:0005737|cytoplasm
Ptp.3505.1.S1_at	A	A1MS	POPTR_0011s14710	POPTR_0011s14710 (11)	scaffold_11:17015747-17015880(+) (11)	NA	NA	NA	AT1G79090.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Topoisomerase II-associated protein PAT1 (InterPro:IPR019167); BEST Arabidopsis thaliana protein match is: Topoisomerase II-associated protein PAT1 (TAIR:AT3G22270.1); Has 1260 Blast hits to 1163 proteins in 186 species: Archae - 0; Bacteria - 32; Metazoa - 596; Fungi - 277; Plants - 212; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). 	LOC_Os02g31220.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3506.1.S1_at	A	A1TS	POPTR_0005s11200	POPTR_0005s11200 (11)	scaffold_5:8124027-8125650(-) (11)	NA	NA	NA	AT4G35920.2	PLAC8 family protein 	LOC_Os03g06120.3	"PLAC8 family protein, expressed"	Medtr5g022570.1	Uncharacterized Cys-rich domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3507.1.S1_s_at	A	A1TS	POPTR_0002s10700	POPTR_0002s10700 (11)	scaffold_2:7766142-7766186(-) (11)	NA	Q9LJM4	Receptor-like protein kinase HAIKU2	AT1G09970.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os12g43640.1	"receptor-like protein kinase HAIKU2 precursor, putative, expressed"	Medtr2g010510.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.3508.1.S1_at	A	A1TS	POPTR_0015s04720	POPTR_0015s04720 (10)	scaffold_15:4933591-4934793(-) (10)	NA	Q46888	Uncharacterized oxidoreductase ygbJ	AT1G18270.2	ketose-bisphosphate aldolase class-II family protein 	LOC_Os06g14740.1	"NAD binding domain of 6-phosphogluconate dehydrogenase containing protein, expressed"	Medtr6g083360.1	"Ketose-bisphosphate aldolase, class-II; 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal-like; ; "	GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0055114|oxidation reduction||GO:0006098|pentose-phosphate shunt	GO:0008270|zinc ion binding||GO:0004616|phosphogluconate dehydrogenase (decarboxylating) activity||GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.3509.1.S1_s_at	A	A1TS	POPTR_0011s10500	POPTR_0011s10500 (11)	scaffold_11:12993967-12994455(-) (11)	NA	P08770	Putative AC transposase	AT3G42170.1	BED zinc finger ;hAT family dimerisation domain 	LOC_Os05g14940.1	"transposon protein, putative, unclassified, expressed"	AC235022_13.1	"Zinc finger, BED-type predicted; HAT dimerisation AC235022.1 87203-82116 E EGN_Mt090430 200"	NA	GO:0003677|DNA binding||GO:0046983|protein dimerization activity	NA
Ptp.351.1.S1_at	A	A1TS	POPTR_0002s12940	POPTR_0002s12940 (10)	scaffold_2:9613105-9613247(-) (10)	NA	Q9LT08	26S proteasome non-ATPase regulatory subunit 14	AT5G23540.1	Mov34/MPN/PAD-1 family protein 	LOC_Os05g30800.1	"26S proteasome non-ATPase regulatory subunit 14, putative, expressed"	Medtr2g021360.1	Mov34-1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3510.1.S1_at	A	A2TS	POPTR_0007s02720	POPTR_1698s00200 (11)//POPTR_0007s02720 (11)	scaffold_1698:53-443(-) (11)//scaffold_7:1584924-1585314(+) (11)	NA	Q9LRJ9	Cysteine-rich repeat secretory protein 38	AT3G22060.1	Receptor-like protein kinase-related family protein 	LOC_Os07g35260.2	"TKL_IRAK_DUF26-lc.9 - DUF26 kinases have homology to DUF26 containing loci, expressed"	Medtr2g103510.1	Protein of unknown function DUF26 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3511.1.S1_s_at	A	A1TS	POPTR_0002s11210	POPTR_0002s11210 (11)	scaffold_2:8279188-8279490(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3512.1.S1_s_at	A	A2TS	POPTR_0017s13650	POPTR_0017s13650 (11)//POPTR_1731s00200 (11)	scaffold_17:13749501-13750223(+) (11)//scaffold_1731:90-812(+) (11)	NA	Q8LFJ9	GDSL esterase/lipase 7	AT5G15720.1	GDSL-motif lipase 7 	LOC_Os01g54470.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr3g022220.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.3513.1.S1_at	A	A1TS	POPTR_0015s11730	POPTR_0015s11730 (11)	scaffold_15:12288338-12288784(+) (11)	NA	P08965	Meiosis protein mei2	AT5G61960.2	MEI2-like protein 1 	LOC_Os02g31290.2	"AML1, putative, expressed"	Medtr3g151260.1	RNA recognition motif 2 	NA	GO:0003676|nucleic acid binding	NA
Ptp.3515.1.S1_s_at	A	A2TS	POPTR_0003s18620	POPTR_0003s18620 (11)//POPTR_0001s07480 (9)	scaffold_1:5613548-5615095(-) (9)//scaffold_3:17625961-17627959(+) (11)	NA	Q40784	Putative glucose-6-phosphate 1-epimerase	AT5G57330.1	Galactose mutarotase-like superfamily protein 	LOC_Os04g56290.5	"aldose 1-epimerase, putative, expressed"	Medtr4g023350.1	Galactose mutarotase-like 	GO:0005975|carbohydrate metabolic process	GO:0016853|isomerase activity	NA
Ptp.3516.1.S1_at	A	A1MS	POPTR_0011s09270	POPTR_0011s09270 (9)	scaffold_11:11491726-11492219(-) (9)	NA	NA	NA	AT4G26980.1	RNI-like superfamily protein 	LOC_Os06g46590.2	expressed protein	Medtr5g100310.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.352.1.S1_at	A	A1TS	POPTR_0003s12960	POPTR_0003s12960 (11)	scaffold_3:13374819-13375608(-) (11)	NA	P04825	Aminopeptidase N	AT1G63770.3	Peptidase M1 family protein 	LOC_Os08g44860.3	"aminopeptidase, putative, expressed"	Medtr3g139630.1	"Peptidase M1, membrane alanine aminopeptidase; "	NA	GO:0008237|metallopeptidase activity||GO:0008270|zinc ion binding	NA
Ptp.3520.1.A1_s_at	A	A1TS	POPTR_0015s13060	POPTR_0015s13060 (11)	scaffold_15:13180964-13181909(+) (11)	NA	O74976	Putative peroxisomal-coenzyme A synthetase	AT3G48990.1	AMP-dependent synthetase and ligase family protein 	LOC_Os04g58710.1	"AMP-binding domain containing protein, expressed"	Medtr3g043450.1	AMP-dependent synthetase and ligase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3521.1.S1_at	A	A1TS	POPTR_0011s17280	POPTR_0011s17280 (10)	scaffold_11:18867113-18868613(+) (10)	NA	Q5ZMQ9	Peroxisomal targeting signal 1 receptor	AT5G56290.1	peroxin 5 	LOC_Os08g39080.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr3g010600.1	Tetratricopeptide-like helical; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3522.1.S1_s_at	A	A1TS	POPTR_0006s05130	POPTR_0006s05130 (11)	scaffold_6:3565893-3566579(-) (11)	NA	Q94A08	Probable galactinol--sucrose galactosyltransferase 2	AT3G57520.1	seed imbibition 2 	LOC_Os07g10840.1	"uncharacterized glycosyltransferase, putative, expressed"	Medtr5g104440.1	Raffinose synthase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3523.1.S1_s_at	A	A1TS	POPTR_0015s13360	POPTR_0015s13360 (11)	scaffold_15:13356981-13357258(+) (11)	NA	Q4FE45	E3 ubiquitin-protein ligase XBAT33	AT5G07270.1	XB3 ortholog 3 in Arabidopsis thaliana 	LOC_Os10g37730.1	"pollen ankyrin, putative, expressed"	AC146807_5.1	"Zinc finger, RING-type AC146807.56 90102-97139 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3524.1.S1_at	A	A1MS	POPTR_0006s25200	POPTR_0006s25200 (9)	scaffold_290:7425-7457(-) (9)//scaffold_6:23624413-23624445(+) (9)	NA	Q54J73	Poly(A) polymerase	AT4G32850.6	nuclear poly(a) polymerase 	LOC_Os06g36360.4	expressed protein	Medtr3g128240.1	"DNA polymerase, beta-like region; Poly(A) polymerase, RNA-binding region; Poly(A) polymerase, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0043631|RNA polyadenylation||GO:0006350|transcription	GO:0004652|polynucleotide adenylyltransferase activity||GO:0003723|RNA binding	GO:0005634|nucleus
Ptp.3525.1.S1_s_at	A	A1TS	POPTR_0002s26430	POPTR_0002s26430 (9)	scaffold_2:23417297-23417777(+) (9)	NA	Q9ZWA6	Zinc finger protein MAGPIE	AT5G66730.1	C2H2-like zinc finger protein 	LOC_Os01g14010.1	"ZOS1-05 - C2H2 zinc finger protein, expressed"	Medtr8g093600.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3526.1.S1_at	A	A1TS	POPTR_0003s06890	POPTR_0003s06890 (11)	scaffold_3:8424450-8425498(-) (11)	NA	Q91WF7	Polyphosphoinositide phosphatase	AT3G14205.1	Phosphoinositide phosphatase family protein 	LOC_Os03g08430.2	"SAC domain containing protein, putative, expressed"	Medtr8g133210.1	"Synaptojanin, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3529.1.S1_at	A	A1TS	POPTR_0019s09450	POPTR_0019s09450 (11)	scaffold_19:10984131-10985541(-) (11)	NA	P90648	Myosin heavy chain kinase B	AT1G21651.1	zinc ion binding 	LOC_Os05g34880.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr1g025560.1	"transducin family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.353.2.S1_a_at	A	A1TS	POPTR_0001s33730	POPTR_0001s33730 (11)	scaffold_1:31902854-31903209(-) (11)	NA	P49730	Ribonucleoside-diphosphate reductase small chain	AT3G27060.1	Ferritin/ribonucleotide reductase-like family protein 	LOC_Os06g03720.1	"ribonucleoside-diphosphate reductase small chain, putative, expressed"	NA	NA	GO:0009186|deoxyribonucleoside diphosphate metabolic process||GO:0044281|small molecule metabolic process||GO:0055114|oxidation reduction	GO:0004748|ribonucleoside-diphosphate reductase activity	NA
Ptp.3530.1.S1_at	A	A1TS	POPTR_0006s05980	POPTR_0006s05980 (11)	scaffold_6:4232787-4233114(+) (11)	NA	NA	NA	AT5G11090.1	serine-rich protein-related 	LOC_Os02g55610.1	"serine-rich protein, putative, expressed"	Medtr8g122340.1	"serine-rich protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3536.1.S1_s_at	A	A1TS	POPTR_0001s10580	POPTR_0001s10580 (11)	scaffold_1:8232630-8232848(+) (11)	NA	NA	NA	AT4G23840.1	Leucine-rich repeat (LRR) family protein 	LOC_Os05g12140.1	"Leucine Rich Repeat family protein, expressed"	Medtr3g058830.1	"Leucine-rich repeat; Leucine-rich repeat, cysteine-containing subtype "	NA	GO:0005515|protein binding	NA
Ptp.3537.1.S1_s_at	A	A1TS	POPTR_0003s19220	POPTR_0003s19220 (11)	scaffold_3:18013533-18013974(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT3G28050.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os08g44750.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr3g124870.1	"Auxin-induced protein 5NG4, related "	NA	NA	GO:0016020|membrane
Ptp.3539.1.S1_at	A	A1TS	POPTR_0005s28040	POPTR_0005s28040 (11)	scaffold_5:25439602-25439852(+) (11)	NA	NA	NA	AT1G21000.2	PLATZ transcription factor family protein 	LOC_Os06g41930.2	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3539.1.S1_x_at	A	A1TS	POPTR_0005s28040	POPTR_0005s28040 (11)	scaffold_5:25439313-25439852(+) (11)	NA	NA	NA	AT1G21000.2	PLATZ transcription factor family protein 	LOC_Os06g41930.2	"zinc-binding protein, putative, expressed"	Medtr5g029980.1	Protein of unknown function DUF597 	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.354.1.S1_at	A	A1TS	POPTR_0008s09520	POPTR_0008s09520 (10)	scaffold_8:5891525-5892674(-) (10)	NA	Q5R8F6	UPF0420 protein C16orf58 homolog	AT1G13770.1	"Protein of unknown function, DUF647 "	LOC_Os03g11500.1	"DUF647 domain containing protein, putative, expressed"	Medtr5g047400.1	Protein of unknown function DUF647 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3541.1.S1_at	A	A1TA	POPTR_0003s15810	POPTR_0003s15810 (9)	scaffold_3:15515619-15516117(-) (9)	NA	Q2HXL0	Respiratory burst oxidase homolog protein C	AT5G47910.1	respiratory burst oxidase homologue D 	LOC_Os11g33120.1	"respiratory burst oxidase, putative, expressed"	Medtr3g151540.1	Calcium-binding EF-hand; ; ; 	GO:0055114|oxidation reduction	"GO:0050660|FAD binding||GO:0050664|""oxidoreductase activity, acting on NADH or NADPH, with oxygen as acceptor""||GO:0005506|iron ion binding||GO:0009055|electron carrier activity||GO:0004601|peroxidase activity"	GO:0016021|integral to membrane
Ptp.355.1.A1_at	A	A1TS	POPTR_0015s07790	POPTR_0015s07790 (10)	scaffold_15:9079144-9080629(-) (10)	NA	O14099	Uncharacterized RING finger protein C2F3.16	AT3G18290.1	zinc finger protein-related 	LOC_Os01g49470.1	"E3 ubiquitin ligase, putative, expressed"	Medtr6g027930.1	"Zinc finger, RING-type; Zinc finger, CHY-type; Hemerythrin HHE cation binding region; "	NA	GO:0008270|zinc ion binding	NA
Ptp.3551.1.S1_a_at	A	A1TS	POPTR_0012s05750	POPTR_0012s05750 (11)	scaffold_12:5557980-5558480(-) (11)	NA	Q3U4B4	Lipase member N	AT1G73920.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g33784.1	"lipase family protein, putative, expressed"	Medtr4g158530.1	AB-hydrolase associated lipase region 	GO:0006629|lipid metabolic process	NA	NA
Ptp.3552.1.S1_s_at	A	A1TS	POPTR_0006s04870	POPTR_0006s04870 (9)	scaffold_6:3396574-3396854(-) (9)	NA	O81644	Villin-2	AT2G41740.1	villin 2 	LOC_Os03g24220.1	"villin protein, putative, expressed"	Medtr8g129450.1	Villin headpiece; Gelsolin region 	GO:0007010|cytoskeleton organization	GO:0003779|actin binding	NA
Ptp.3557.1.S1_s_at	A	A1TS	POPTR_0006s23290	POPTR_0006s23290 (11)	scaffold_6:22052670-22053041(+) (11)	NA	O76094	Signal recognition particle 72 kDa protein	AT1G67680.1	SRP72 RNA-binding domain 	LOC_Os01g66560.1	"signal recognition particle 72 kDa protein, putative, expressed"	NA	NA	GO:0006614|SRP-dependent cotranslational protein targeting to membrane	GO:0008312|7S RNA binding	GO:0048500|signal recognition particle
Ptp.3558.1.A1_at	A	A1TS	POPTR_0006s06100	POPTR_0006s06100 (10)	scaffold_6:4339785-4340010(+) (10)	NA	Q9FZP1	Heparanase-like protein 3	AT5G34940.2	glucuronidase 3 	LOC_Os06g08090.2	"heparanase-like protein precursor, putative, expressed"	Medtr8g122140.1	"Glycoside hydrolase family 79, N-terminal "	NA	"GO:0016798|""hydrolase activity, acting on glycosyl bonds"""	GO:0016020|membrane
Ptp.3559.1.A1_at	A	A1TS	POPTR_0006s09860	POPTR_0006s09860 (11)	scaffold_6:7252904-7253414(+) (11)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3561.1.S1_at	A	A1TS	POPTR_0010s21780	POPTR_0010s21780 (11)	scaffold_10:18915853-18918053(-) (11)	NA	P28563	Dual specificity protein phosphatase 1	AT3G55270.1	mitogen-activated protein kinase phosphatase 1 	LOC_Os05g02500.1	"dual specificity protein phosphatase, putative, expressed"	Medtr3g102500.1	Dual specificity protein phosphatase 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.3563.1.S1_s_at	A	A1TS	POPTR_0003s04120	POPTR_0003s04120 (11)	scaffold_3:4780743-4781271(+) (11)	NA	Q9CAJ0	Protein phosphatase 2C 16	AT1G72770.3	homology to ABI1 	LOC_Os01g40094.1	"protein phosphatase 2C, putative, expressed"	Medtr1g019320.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3565.1.S1_at	A	A1MA	POPTR_0007s06980	POPTR_0007s06980 (10)	scaffold_7:5334765-5335164(-) (10)	NA	Q9ZVM9	Probable serine/threonine-protein kinase At1g54610	AT1G53050.1	Protein kinase superfamily protein 	LOC_Os07g47180.1	"transposon protein, putative, unclassified, expressed"	Medtr1g124770.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3566.1.S1_at	A	A1TS	POPTR_0012s14750	POPTR_0012s14750 (11)	scaffold_12:14517812-14518338(-) (11)	NA	NA	NA	AT5G44860.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19950.1); Has 233 Blast hits to 227 proteins in 25 species: Archae - 0; Bacteria - 13; Metazoa - 1; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). 	LOC_Os01g58620.1	expressed protein	Medtr7g021420.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3567.1.S1_s_at	A	A1TS	POPTR_0003s21690	POPTR_0003s21690 (11)	scaffold_3:19746284-19746859(-) (11)	NA	Q9LXT9	Callose synthase 3	AT5G13000.1	glucan synthase-like 12 	LOC_Os03g03610.3	"1,3-beta-glucan synthase component domain containing protein, expressed"	Medtr7g005640.1	"Glycosyl transferase, family 48 "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006075|""1,3-beta-glucan biosynthetic process"""	"GO:0003843|""1,3-beta-glucan synthase activity"""	"GO:0000148|""1,3-beta-glucan synthase complex"""
Ptp.3569.1.S1_at	A	A1TS	POPTR_0015s01020	POPTR_0015s01020 (9)	scaffold_15:594613-595095(+) (11)	NA	Q9P6Q3	Probable mitochondrial chaperone bcs1	AT2G46620.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os03g02330.1	"AAA-type ATPase family protein, putative, expressed"	Medtr3g123370.1	AAA ATPase 	NA	GO:0005524|ATP binding	NA
Ptp.357.1.S1_at	A	A1TS	POPTR_0009s04900	POPTR_0009s04900 (10)	scaffold_9:5150125-5151825(+) (10)	NA	A8AI59	Flavoprotein wrbA	AT5G58800.2	Quinone reductase family protein 	LOC_Os08g04460.1	"NADPH-dependent FMN reductase domain containing protein, expressed"	Medtr5g078480.1	Flavodoxin/nitric oxide synthase 	NA	GO:0010181|FMN binding||GO:0016491|oxidoreductase activity	NA
Ptp.3570.1.S1_s_at	A	A2TS	POPTR_0001s11440	POPTR_0001s11440 (11)//POPTR_0003s14750 (11)	scaffold_1:8901814-8901951(+) (11)//scaffold_3:14747773-14747910(+) (11)	NA	Q8BUV8	Protein GPR107	AT5G42090.1	Lung seven transmembrane receptor family protein 	LOC_Os06g04130.2	"lung seven transmembrane domain containing protein, putative, expressed"	Medtr3g109390.1	Lung seven transmembrane receptor 	NA	NA	GO:0016021|integral to membrane
Ptp.3571.1.S1_at	A	A1TS	POPTR_0001s12740	POPTR_0001s12740 (9)	scaffold_1:9868848-9869053(-) (9)	NA	NA	NA	AT5G32450.1	RNA binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g54870.2	"RNA recognition motif containing protein, putative, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.3572.1.S1_s_at	A	A1TS	POPTR_0011s15140	POPTR_0011s15140 (11)	scaffold_11:17301598-17302121(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G75500.2	Walls Are Thin 1 	LOC_Os05g33900.1	"auxin-induced protein 5NG4, putative, expressed"	Medtr1g081140.1	"Protein of unknown function DUF6, transmembrane "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3577.1.S1_at	A	A1TS	POPTR_0005s28160	POPTR_0005s28160 (11)	scaffold_5:25512708-25513245(-) (11)	POPTR_0002s00280 (7)	Q8RXL8	Uncharacterized membrane protein At1g06890	AT1G21070.1	Nucleotide-sugar transporter family protein 	LOC_Os07g39280.1	"transporter-related, putative, expressed"	Medtr4g141240.1	Protein of unknown function DUF250 	NA	NA	GO:0016020|membrane
Ptp.358.1.S1_s_at	A	A1TS	POPTR_0002s02480	POPTR_0002s02480 (11)	scaffold_2:1398872-1399088(-) (11)	NA	NA	NA	AT1G75710.1	C2H2-like zinc finger protein 	LOC_Os04g02510.1	"ZOS4-01 - C2H2 zinc finger protein, expressed"	Medtr1g030900.1	"Zinc finger, C2H2-type "	GO:0009405|pathogenesis||GO:0051704|multi-organism process	GO:0019855|calcium channel inhibitor activity||GO:0008270|zinc ion binding	GO:0005622|intracellular||GO:0005576|extracellular region
Ptp.3581.1.S1_at	A	A1TS	POPTR_0006s07650	POPTR_0006s07650 (10)	scaffold_6:5575978-5576444(-) (10)	NA	Q9SZW4	Putative cadmium/zinc-transporting ATPase 3	AT4G30110.1	heavy metal atpase 2 	LOC_Os07g12900.1	"cadmium/zinc-transporting ATPase, putative"	Medtr8g129520.1	Cof protein; Copper-translocating P-type ATPase; Heavy metal translocating P-type ATPase 	GO:0030001|metal ion transport||GO:0006754|ATP biosynthetic process||GO:0044281|small molecule metabolic process	"GO:0016820|""hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances""||GO:0046872|metal ion binding||GO:0005524|ATP binding"	GO:0016020|membrane
Ptp.3585.1.S1_s_at	A	A1TS	POPTR_0005s17180	POPTR_0005s17180 (11)	scaffold_5:14347219-14347552(-) (11)	NA	Q9C9Q8	Probable pectin methyltransferase QUA2	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os02g51860.1	"dehydration response related protein, putative, expressed"	Medtr5g072950.1	"Protein of unknown function DUF248, methyltransferase putative "	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.3586.1.S1_at	A	A1TS	POPTR_0019s09540	POPTR_0019s09540 (10)	scaffold_19:11130970-11131378(-) (10)	NA	Q93VV5	Probable peptide/nitrate transporter At1g59740	AT1G59740.1	Major facilitator superfamily protein 	LOC_Os11g12740.1	"peptide transporter PTR2, putative, expressed"	Medtr2g005060.1	"TGF-beta receptor, type I/II extracellular region; ABC transporter related "	GO:0006857|oligopeptide transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3587.1.A1_at	A	A1TS	POPTR_0004s22520	POPTR_0004s22520 (11)	scaffold_4:21387476-21387782(-) (11)	NA	Q56WF8	Serine carboxypeptidase-like 48	AT3G45010.1	serine carboxypeptidase-like 48 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g113720.2	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3587.1.A1_s_at	A	A1TS	POPTR_0004s22520	POPTR_0004s22520 (11)	scaffold_4:21387938-21388062(-) (11)	NA	Q56WF8	Serine carboxypeptidase-like 48	AT3G45010.1	serine carboxypeptidase-like 48 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr2g113720.2	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3588.1.S1_at	A	A1TS	POPTR_0008s18280	POPTR_0008s18280 (9)	scaffold_8:12235330-12235717(-) (9)	NA	NA	NA	AT1G13190.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os09g29980.2	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	NA	NA	NA	GO:0003676|nucleic acid binding	NA
Ptp.359.2.S1_a_at	A	A1TS	POPTR_0008s06080	POPTR_0008s06080 (11)	scaffold_8:3592201-3592691(-) (11)	NA	Q8W115	PRA1 family protein A3	AT3G11402.2	Cysteine/Histidine-rich C1 domain family protein 	LOC_Os05g38160.1	"prenylated rab acceptor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3590.1.A1_s_at	A	A1TS	POPTR_0013s11670	POPTR_0013s11670 (11)	scaffold_13:12341975-12342651(-) (11)	NA	NA	NA	AT1G68300.1	Adenine nucleotide alpha hydrolases-like superfamily protein 	LOC_Os01g32780.1	"universal stress protein domain containing protein, putative, expressed"	Medtr1g100450.1	UspA 	GO:0006950|response to stress	NA	NA
Ptp.3591.1.A1_s_at	A	A1TS	POPTR_0004s16200	POPTR_0004s16200 (11)	scaffold_4:16624592-16624822(+) (11)	NA	NA	NA	AT1G63850.1	BTB/POZ domain-containing protein 	LOC_Os03g51380.1	expressed protein	Medtr4g095540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3598.1.A1_at	A	A1TS	POPTR_0001s33790	POPTR_0001s33790 (11)	scaffold_1:31956866-31957231(+) (11)	NA	P37707	B2 protein	AT3G27090.1	DCD (Development and Cell Death) domain protein 	LOC_Os05g41930.3	"N-rich protein, putative, expressed"	Medtr1g023710.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.36.1.S1_s_at	A	A3TS	POPTR_0002s20890	POPTR_0483s00220 (11)//POPTR_0002s20890 (11)//POPTR_0483s00200 (10)	scaffold_2:17113635-17113882(-) (11)//scaffold_483:319-566(+) (11)//scaffold_483:14584-14831(+) (11)	NA	P42760	Glutathione S-transferase 1	AT1G02930.2	glutathione S-transferase 6 	LOC_Os01g27360.1	"glutathione S-transferase, putative, expressed"	Medtr3g086850.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3600.1.S1_at	A	A1TS	POPTR_0016s07910	POPTR_0016s07910 (11)	scaffold_16:5739004-5739239(+) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37970.1	cinnamyl alcohol dehydrogenase 6 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3600.1.S1_s_at	A	A1TS	POPTR_0016s07910	POPTR_0016s07910 (11)	scaffold_16:5739261-5739560(+) (11)	NA	Q9ZRF1	Probable mannitol dehydrogenase	AT4G37970.1	cinnamyl alcohol dehydrogenase 6 	LOC_Os10g29470.1	"dehydrogenase, putative, expressed"	Medtr5g032650.1	"Alcohol dehydrogenase superfamily, zinc-containing; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3605.1.A1_s_at	A	A1TS	POPTR_0016s06000	POPTR_0016s06000 (11)	scaffold_16:3924781-3925285(-) (11)	NA	Q39147	DNA-3-methyladenine glycosylase	AT3G12040.1	DNA-3-methyladenine glycosylase (MAG) 	LOC_Os02g53430.1	"DNA-3-methyladenine glycosylase, putative, expressed"	Medtr7g112240.1	Methylpurine-DNA glycosylase (MPG) 	GO:0044260|cellular macromolecule metabolic process||GO:0006284|base-excision repair||GO:0006974|response to DNA damage stimulus||GO:0033554|cellular response to stress	GO:0003677|DNA binding||GO:0003905|alkylbase DNA N-glycosylase activity	NA
Ptp.3607.1.S1_at	A	A1MS	POPTR_0008s12090	POPTR_0008s12090 (9)	scaffold_8:7802340-7802931(-) (9)	NA	NA	NA	AT1G68440.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). 	NA	NA	Medtr5g067220.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3608.1.S1_s_at	A	A1TS	POPTR_0001s31220	POPTR_0001s31220 (11)	scaffold_1:29549904-29550182(-) (11)	NA	O65922	Caffeoyl-CoA O-methyltransferase 2	AT4G34050.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os06g06980.1	"caffeoyl-CoA O-methyltransferase, putative, expressed"	Medtr4g130200.1	"O-methyltransferase, family 3 "	NA	GO:0008171|O-methyltransferase activity	NA
Ptp.361.1.S1_at	A	A1TS	POPTR_0008s14580	POPTR_0008s14580 (10)	scaffold_8:9666161-9666597(+) (10)	NA	Q0WPE9	Nucleobase-ascorbate transporter 7	AT1G60030.1	nucleobase-ascorbate transporter 7 	LOC_Os02g50820.1	"nucleobase-ascorbate transporter, putative, expressed"	Medtr8g073630.1	Xanthine/uracil/vitamin C permease 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3611.1.S1_at	A	A1TS	POPTR_0014s17930	POPTR_0014s17930 (10)	scaffold_14:14468152-14468682(-) (10)	NA	Q9FRK5	Uncharacterized membrane protein At1g75140	AT1G75140.1	unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19370.1); Has 51 Blast hits to 49 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os06g02480.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3612.1.S1_s_at	A	A1TS	POPTR_0001s12530	POPTR_0001s12530 (11)	scaffold_1:9717672-9718591(-) (11)	NA	Q9FFN2	Probable glycosyltransferase At5g03795	AT4G38040.1	Exostosin family protein 	LOC_Os02g09430.1	"exostosin family domain containing protein, expressed"	Medtr7g102590.1	Exostosin-like 	NA	NA	GO:0016020|membrane
Ptp.3616.1.S1_s_at	A	A1TS	POPTR_0606s00210	POPTR_0606s00210 (11)	scaffold_606:7731-8061(+) (11)	NA	O81488	PHD finger protein At5g26210	AT2G02470.1	alfin-like 6 	LOC_Os04g36730.1	"PHD finger protein, putative, expressed"	Medtr2g120670.1	"Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3619.1.S1_at	A	A1TS	POPTR_0001s04580	POPTR_0001s04580 (9)	scaffold_1:3570328-3571576(-) (9)	NA	NA	NA	AT5G19860.1	"Protein of unknown function, DUF538 "	LOC_Os03g48710.1	expressed protein	Medtr4g133910.1	Protein of unknown function DUF538 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.362.1.A1_s_at	A	A1TS	POPTR_0013s11910	POPTR_0013s11910 (11)	scaffold_13:12535708-12537132(-) (11)	NA	NA	NA	AT1G34355.1	forkhead-associated (FHA) domain-containing protein  	LOC_Os11g07050.1	"FHA domain containing protein, putative, expressed"	Medtr1g122320.1	Forkhead-associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3620.1.S1_s_at	A	A1TS	POPTR_0025s00560	POPTR_0025s00560 (11)	scaffold_25:250847-251079(-) (11)	NA	P21616	Pyrophosphate-energized vacuolar membrane proton pump	AT1G15690.1	Inorganic H pyrophosphatase family protein 	LOC_Os02g09150.1	"inorganic H+ pyrophosphatase, putative, expressed"	Medtr8g122030.1	Inorganic H+ pyrophosphatase 	GO:0015992|proton transport	GO:0004427|inorganic diphosphatase activity||GO:0009678|hydrogen-translocating pyrophosphatase activity	GO:0016020|membrane
Ptp.3622.1.S1_s_at	A	A1TS	POPTR_0011s05610	POPTR_0011s05610 (11)	scaffold_11:5584076-5584356(-) (11)	NA	Q688X9	Protein DEHYDRATION-INDUCED 19	NA	NA	LOC_Os05g48800.2	"drought induced 19 protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3627.1.A1_at	A	A1TS	POPTR_0014s08310	POPTR_0014s08310 (11)	scaffold_14:6177291-6177673(+) (11)	NA	Q8VZJ9	Probable leucine-rich repeat receptor-like protein kinase At4g00330	AT4G00330.1	calmodulin-binding receptor-like cytoplasmic kinase 2 	LOC_Os03g05470.1	"tyrosine protein kinase domain containing protein, putative, expressed"	AC235567_9.1	"Serine/threonine protein kinase, active site AC235567.1 39723-36116 E EGN_Mt090430 200"	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3628.1.S1_s_at	A	A1TS	POPTR_0018s01730	POPTR_0018s01730 (10)	scaffold_18:1575585-1577041(-) (10)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3628.2.S1_s_at	A	A1TS	POPTR_0018s01730	POPTR_0018s01730 (11)	scaffold_18:1578207-1579242(-) (11)	NA	NA	NA	AT4G32330.3	TPX2 (targeting protein for Xklp2) protein family 	LOC_Os02g10690.2	"targeting protein for Xklp2, putative, expressed"	Medtr1g013800.1	Targeting for Xklp2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3629.1.S1_at	A	A1TS	POPTR_0010s04340	POPTR_0010s04340 (10)	scaffold_10:5415921-5416689(-) (10)	NA	NA	NA	AT2G02590.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 405 Blast hits to 405 proteins in 185 species: Archae - 65; Bacteria - 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). 	LOC_Os03g58620.1	"small multi-drug export protein, putative, expressed"	Medtr5g038640.1	Putative small multi-drug export 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3635.1.S1_s_at	A	A1TS	POPTR_0012s03610	POPTR_0012s03610 (10)	scaffold_12:2841599-2841819(+) (10)	NA	P54767	Glutamate decarboxylase	AT3G17760.2	glutamate decarboxylase 5 	LOC_Os08g36320.2	"decarboxylase, putative, expressed"	Medtr3g086860.1	Glutamate decarboxylase; 	GO:0019752|carboxylic acid metabolic process||GO:0044281|small molecule metabolic process	GO:0030170|pyridoxal phosphate binding||GO:0016831|carboxy-lyase activity	NA
Ptp.3636.1.S1_at	A	A1TS	POPTR_0010s17150	POPTR_0010s17150 (11)	scaffold_10:15871180-15871625(+) (11)	NA	Q9SEL5	Vesicle transport v-SNARE 12	AT1G26670.1	Vesicle transport v-SNARE family protein 	LOC_Os01g51120.1	"vesicle transport v-SNARE protein, putative, expressed"	Medtr5g045560.1	Vesicle transport v-SNARE 	GO:0006886|intracellular protein transport	NA	GO:0016020|membrane
Ptp.3637.1.S1_at	A	A1TS	POPTR_0004s04840	POPTR_0004s04840 (10)	scaffold_4:3587276-3587639(-) (10)	NA	NA	NA	AT1G28420.1	homeobox-1 	LOC_Os05g48820.1	"DDT, putative, expressed"	Medtr2g018010.1	DDT; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3639.1.S1_at	A	A1TS	POPTR_0004s15200	POPTR_0004s15200 (10)	scaffold_4:15848651-15849145(-) (10)	NA	Q9FX85	Peroxidase 10	AT1G49570.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr5g017850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.3639.2.S1_a_at	A	A1TS	POPTR_0004s15200	POPTR_0004s15200 (11)	scaffold_4:15850478-15850682(-) (11)//scaffold_9:9256729-9256839(-) (9)	POPTR_0009s10960 (8)	Q9FX85	Peroxidase 10	AT1G49570.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr5g017850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.3639.2.S1_at	A	A1MS	POPTR_0004s15200	POPTR_0004s15200 (11)	scaffold_4:15850154-15850438(-) (11)	NA	Q9FX85	Peroxidase 10	AT1G49570.1	Peroxidase superfamily protein 	LOC_Os03g13210.1	"peroxidase precursor, putative, expressed"	Medtr5g017850.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.364.2.S1_a_at	A	A1TS	POPTR_0011s11970	POPTR_0011s11970 (11)	scaffold_11:14763734-14764011(-) (11)	NA	Q54ID0	Cytochrome c oxidase copper chaperone	AT3G15352.1	cytochrome c oxidase 17 	LOC_Os09g25314.1	"cytochrome c oxidase copper chaperone, putative, expressed"	Medtr2g100210.1	Cytochrome C oxidase copper chaperone 	GO:0006825|copper ion transport	GO:0016531|copper chaperone activity	GO:0005758|mitochondrial intermembrane space
Ptp.3641.1.S1_at	A	A1TS	POPTR_0008s03480	POPTR_0008s03480 (11)	scaffold_8:1855463-1856039(+) (11)	NA	P32826	Serine carboxypeptidase-like 49	AT3G10410.1	SERINE CARBOXYPEPTIDASE-LIKE 49 	LOC_Os02g02320.1	"OsSCP6 - Putative Serine Carboxypeptidase homologue, expressed"	Medtr1g068630.1	"Peptidase S10, serine carboxypeptidase "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004185|serine-type carboxypeptidase activity	NA
Ptp.3642.1.A1_at	A	A1TS	POPTR_0018s13040	POPTR_0018s13040 (11)	scaffold_18:13502267-13502576(-) (11)	NA	NA	NA	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr8g120620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3642.1.A1_s_at	A	A2TS	POPTR_0018s13040	POPTR_0018s13040 (11)//POPTR_0018s13020 (9)	scaffold_18:13488480-13488938(-) (9)//scaffold_18:13502403-13502872(-) (11)	NA	NA	NA	AT5G20190.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os06g40440.1	expressed protein	Medtr8g120620.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3644.1.S1_at	A	A1TS	POPTR_0009s11080	POPTR_0009s11080 (11)	scaffold_9:9325773-9325841(-) (11)	NA	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3644.1.S1_s_at	A	A1TS	POPTR_0009s11080	POPTR_0009s11080 (11)	scaffold_9:9325857-9326477(-) (11)	POPTR_0009s11090 (7)	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3644.1.S1_x_at	A	A1TS	POPTR_0009s11080	POPTR_0009s11080 (11)	scaffold_9:9325774-9326620(-) (11)	POPTR_0009s11090 (8)	Q39110	Gibberellin 20 oxidase 1	AT3G19000.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os03g42130.1	"gibberellin 20 oxidase 2, putative, expressed"	Medtr4g128880.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3646.1.S1_s_at	A	A1TS	POPTR_0006s04170	POPTR_0006s04170 (11)	scaffold_6:2830126-2831217(+) (11)	NA	Q9SU56	"L-galactono-1,4-lactone dehydrogenase, mitochondrial"	AT3G47930.1	"L-galactono-1,4-lactone dehydrogenase "	LOC_Os11g04740.1	"FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed"	Medtr1g068880.1	Galactonolactone dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3648.1.S1_at	A	A1TS	POPTR_0001s16750	POPTR_0001s16750 (10)	scaffold_1:13531606-13531965(+) (10)	NA	O65351	Subtilisin-like protease	AT3G14067.1	Subtilase family protein 	LOC_Os02g53860.1	"OsSub22 - Putative Subtilisin homologue, expressed"	Medtr8g025260.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0043086|negative regulation of catalytic activity||GO:0006508|proteolysis||GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process	GO:0004252|serine-type endopeptidase activity||GO:0042802|identical protein binding	NA
Ptp.3651.1.S1_s_at	A	A1TS	POPTR_0014s12790	POPTR_0014s12790 (11)	scaffold_14:9422889-9423473(-) (11)	NA	Q110D7	Peptide chain release factor 1	AT3G62910.1	Peptide chain release factor 1 	LOC_Os11g43600.1	"peptide chain release factor protein, putative, expressed"	Medtr7g130010.1	Peptide chain release factor 1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006415|translational termination	"GO:0016149|""translation release factor activity, codon specific"""	GO:0005737|cytoplasm
Ptp.3653.1.S1_at	A	A1TS	POPTR_0002s08870	POPTR_0002s08870 (11)	scaffold_2:6236954-6237769(+) (11)	NA	Q8L751	Oxysterol-binding protein-related protein 1C	AT4G08180.2	OSBP(oxysterol binding protein)-related protein 1C 	LOC_Os03g49770.1	"oxysterol-binding protein, putative, expressed"	Medtr3g098130.1	Oxysterol-binding protein; Pleckstrin homology-type 	GO:0008202|steroid metabolic process||GO:0006629|lipid metabolic process	NA	NA
Ptp.3655.2.S1_a_at	A	A1TS	POPTR_0014s16870	POPTR_0014s16870 (11)	scaffold_14:12989617-12990534(-) (11)	NA	Q9SSE5	Zinc finger protein CONSTANS-LIKE 9	AT3G07650.4	CONSTANS-like 9 	LOC_Os06g19444.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr3g106670.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3656.1.S1_at	A	A1TA	POPTR_0007s13690	POPTR_0007s13690 (10)	scaffold_7:13707278-13707536(-) (10)	NA	Q9FL28	LRR receptor-like serine/threonine-protein kinase FLS2	AT5G46330.1	Leucine-rich receptor-like protein kinase family protein 	LOC_Os04g52780.1	"leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed"	Medtr8g090480.1	"LRR receptor-like serine/threonine-protein kinase FLS2 precursor, related "	NA	GO:0005515|protein binding	NA
Ptp.3658.2.A1_at	A	A1TS	POPTR_0003s19130	POPTR_0003s19130 (10)	scaffold_3:17932575-17932674(+) (10)	NA	A0JPP1	Dr1-associated corepressor	AT3G12480.1	"nuclear factor Y, subunit C11 "	LOC_Os05g41450.1	"histone-like transcription factor and archaeal histone, putative, expressed"	Medtr8g044480.1	Histone-fold/TFIID-TAF/NF-Y 	NA	GO:0043565|sequence-specific DNA binding	GO:0005622|intracellular
Ptp.3659.1.A1_s_at	A	A1TS	POPTR_0014s09150	POPTR_0014s09150 (10)	scaffold_14:6787700-6788189(+) (10)	NA	NA	NA	AT1G01430.1	TRICHOME BIREFRINGENCE-LIKE 25 	LOC_Os05g12380.1	expressed protein	Medtr5g036350.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3660.1.S1_at	A	A1TS	POPTR_0001s09810	POPTR_0001s09810 (9)	scaffold_1:7552580-7553027(-) (9)	NA	Q8LPH6	Transcription factor MYB86	AT1G63910.1	myb domain protein 103 	LOC_Os08g05520.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g010100.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3662.1.S1_at	A	A1TS	POPTR_0018s13010	POPTR_0018s13010 (11)	scaffold_18:13485060-13485348(+) (11)	NA	Q8R139	Equilibrative nucleoside transporter 4	AT1G02630.1	Nucleoside transporter family protein 	LOC_Os08g10450.1	"nucleoside transporter, putative, expressed"	Medtr8g120640.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
Ptp.3665.1.S1_s_at	A	A1TS	POPTR_0016s01980	POPTR_0016s01980 (11)	scaffold_16:907826-908197(-) (11)	NA	Q9LIE5	Protein FAR-RED ELONGATED HYPOCOTYL 3	AT3G22170.2	far-red elongated hypocotyls 3 	LOC_Os02g39540.2	"transposon protein, putative, unclassified, expressed"	Medtr3g016350.1	"FAR1; Zinc finger, SWIM-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3670.1.S1_at	A	A1TS	POPTR_0002s08560	POPTR_0002s08560 (11)	scaffold_2:5980688-5981214(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G21890.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097580.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.3670.2.S1_at	A	A1MS	POPTR_0002s08560	POPTR_0002s08560 (11)	scaffold_2:5982280-5982449(-) (11)	NA	Q6J163	Auxin-induced protein 5NG4	AT1G21890.1	nodulin MtN21 /EamA-like transporter family protein 	LOC_Os10g14920.2	"integral membrane protein DUF6 containing protein, expressed"	Medtr3g097580.1	"Protein of unknown function DUF6, transmembrane "	NA	NA	GO:0016020|membrane
Ptp.3673.1.S1_s_at	A	A1TS	POPTR_0014s08180	POPTR_0014s08180 (11)	scaffold_14:6072595-6072881(-) (11)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.2	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3674.1.S1_s_at	A	A1TS	POPTR_0006s01310	POPTR_0006s01310 (11)	scaffold_6:758699-761303(+) (11)	NA	Q7SXW4	Transmembrane protein 111	AT4G12590.1	"Protein of unknown function DUF106, transmembrane "	LOC_Os09g32220.1	"pob, putative, expressed"	Medtr1g093450.1	"Protein of unknown function DUF850, transmembrane eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3679.1.S1_s_at	A	A1TS	POPTR_0014s14210	POPTR_0014s14210 (11)	scaffold_14:10405893-10407741(-) (11)	NA	P93654	Syntaxin-22	AT5G46860.1	Syntaxin/t-SNARE family protein 	LOC_Os01g15110.1	"syntaxin, putative, expressed"	Medtr7g099400.1	"Syntaxin, N-terminal "	NA	NA	GO:0016020|membrane
Ptp.368.1.S1_s_at	A	A1TS	POPTR_0009s11800	POPTR_0009s11800 (11)	scaffold_9:9724959-9725339(+) (11)	NA	Q0WW26	Coatomer subunit gamma	AT4G34450.1	"coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative "	LOC_Os07g10150.1	"coatomer subunit gamma-2, putative, expressed"	Medtr3g159510.1	"Adaptin, N-terminal; AP2 clathrin adaptor, alpha and beta chain, appendage; ; ; "	GO:0016192|vesicle-mediated transport||GO:0006886|intracellular protein transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030117|membrane coat||GO:0005798|Golgi-associated vesicle
Ptp.3683.1.A1_at	A	A1TS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13976348-13976409(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3683.2.S1_at	A	A1MS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13975777-13975937(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3683.2.S1_s_at	A	A1TS	POPTR_0014s17710	POPTR_0014s17710 (11)	scaffold_14:13976002-13976106(+) (11)	NA	Q9LKJ1	3-hydroxyisobutyryl-CoA hydrolase 1	AT5G65940.1	beta-hydroxyisobutyryl-CoA hydrolase 1 	LOC_Os12g16350.1	"enoyl-CoA hydratase/isomerase family protein, putative, expressed"	Medtr8g005790.1	Enoyl-CoA hydratase/isomerase 	GO:0008152|metabolic process	GO:0003824|catalytic activity	NA
Ptp.3686.1.S1_at	A	A1TS	POPTR_0012s10200	POPTR_0012s10200 (9)	scaffold_12:11028445-11028663(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3687.1.A1_s_at	A	A1TS	POPTR_0001s34750	POPTR_0001s34750 (11)	scaffold_1:32986193-32986295(-) (11)	NA	Q93X17	Snakin-2	AT5G14920.1	Gibberellin-regulated family protein 	LOC_Os04g39110.1	"GASR4 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed"	Medtr6g008660.1	Gibberellin regulated protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.369.1.S1_at	A	A1TS	POPTR_0001s14420	POPTR_0001s14420 (9)	scaffold_1:11311981-11312216(+) (9)	NA	NA	NA	AT1G04770.1	Tetratricopeptide repeat (TPR)-like superfamily protein 	LOC_Os05g43040.1	"tetratricopeptide repeat domain containing protein, expressed"	Medtr7g064920.1	Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3691.1.S1_at	A	A1TS	POPTR_0016s04530	POPTR_0016s04530 (9)	scaffold_16:2661209-2661525(-) (9)	NA	NA	NA	AT3G58000.1	VQ motif-containing protein 	LOC_Os04g57030.1	"VQ domain containing protein, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3693.1.S1_at	A	A1TS	POPTR_0014s11270	POPTR_0014s11270 (11)	scaffold_14:8389776-8390619(+) (11)	NA	Q9NPF5	DNA methyltransferase 1-associated protein 1	AT2G47210.1	myb-like transcription factor family protein 	LOC_Os05g46330.1	"MYB family transcription factor, putative, expressed"	Medtr7g133340.1	Homeodomain-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.37.1.S1_at	A	A1TS	POPTR_0003s09110	POPTR_0003s09110 (10)	scaffold_3:10434885-10437360(+) (10)	NA	Q8H100	Probable ADP-ribosylation factor GTPase-activating protein AGD8	AT4G17890.1	ARF-GAP domain 8 	LOC_Os03g63710.1	"GTPase-activating protein, putative, expressed"	Medtr8g078470.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.3700.1.A1_at	A	A1TS	POPTR_0004s19550	POPTR_0004s19550 (9)	scaffold_4:19359440-19359805(+) (9)	NA	NA	NA	AT3G07350.1	Protein of unknown function (DUF506)  	LOC_Os11g25040.1	"plant-specific domain TIGR01615 family protein, expressed"	Medtr8g012610.1	"Protein of unknown function DUF506, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3703.1.S1_s_at	A	A1TS	POPTR_0013s14170	POPTR_0013s14170 (11)	scaffold_13:14468251-14468486(-) (11)	NA	Q8GZA8	Protein ULTRAPETALA 1	AT4G28190.1	"Developmental regulator, ULTRAPETALA "	LOC_Os01g57240.1	expressed protein	AC229695_17.1	"Protein ULTRAPETALA 2, putative AC229695.5 69003-71368 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3704.1.S1_at	A	A1TS	POPTR_0009s08730	POPTR_0009s08730 (11)	scaffold_9:7888659-7889176(-) (11)	NA	NA	NA	AT1G10020.1	Protein of unknown function (DUF1005) 	LOC_Os07g04150.1	"stress-induced protein, putative, expressed"	Medtr5g005600.1	Protein of unknown function DUF1005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3705.1.A1_s_at	A	A1TS	POPTR_0011s11620	POPTR_0011s11620 (11)	scaffold_11:14416635-14417122(+) (11)	NA	O80340	Ethylene-responsive transcription factor 4	AT3G15210.1	ethylene responsive element binding factor 4 	LOC_Os05g29810.1	"AP2 domain containing protein, expressed"	Medtr4g108460.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3708.1.S1_s_at	A	A1TS	POPTR_0001s13670	POPTR_0001s13670 (11)	scaffold_1:10765085-10765638(+) (11)	NA	NA	NA	AT1G27290.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os09g32960.2	expressed protein	Medtr3g104180.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.371.1.S1_at	A	A1TS	POPTR_0013s14760	POPTR_0013s14760 (11)	scaffold_13:14903064-14903137(-) (11)	POPTR_0013s14770 (7)	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.371.1.S1_x_at	A	A1TS	POPTR_0013s14760	POPTR_0013s14760 (10)	scaffold_13:14903064-14910194(-) (11)	POPTR_0013s14770 (7)	Q8LEJ6	Fasciclin-like arabinogalactan protein 11	AT5G03170.1	FASCICLIN-like arabinogalactan-protein 11 	LOC_Os01g06580.1	"fasciclin domain containing protein, expressed"	Medtr7g121350.1	Beta-Ig-H3/fasciclin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3710.1.S1_at	A	A1MS	POPTR_0001s33270	POPTR_0001s33270 (9)	scaffold_1:31465305-31465750(-) (9)	NA	Q9C104	Glycerophosphodiester phosphodiesterase gde1	AT3G02040.1	senescence-related gene 3 	LOC_Os02g31030.2	"glycerophosphoryl diester phosphodiesterase family protein, putative, expressed"	Medtr7g096490.1	Glycerophosphoryl diester phosphodiesterase 	GO:0044281|small molecule metabolic process||GO:0006071|glycerol metabolic process	GO:0008889|glycerophosphodiester phosphodiesterase activity	NA
Ptp.3711.1.S1_s_at	A	A1TS	POPTR_0011s03350	POPTR_0011s03350 (11)	scaffold_11:3502815-3503286(+) (11)	NA	NA	NA	AT1G61740.1	Sulfite exporter TauE/SafE family protein 	LOC_Os01g57710.1	"membrane protein, putative, expressed"	Medtr2g010790.1	Protein of unknown function DUF81 	NA	NA	GO:0016021|integral to membrane
Ptp.3712.1.S1_at	A	A1TS	POPTR_0018s03430	POPTR_0018s03430 (11)	scaffold_18:3012079-3012231(+) (11)	NA	Q9SJA7	Probable sarcosine oxidase	AT2G24580.1	FAD-dependent oxidoreductase family protein 	LOC_Os09g32290.2	"FAD dependent oxidoreductase domain containing protein, expressed"	Medtr3g133200.1	NAD-binding site 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3713.1.S1_s_at	A	A1TS	POPTR_0011s12360	POPTR_0011s12360 (11)	scaffold_11:15083519-15083939(-) (11)	NA	NA	NA	AT4G27430.2	COP1-interacting protein 7 	LOC_Os07g26440.1	expressed protein	Medtr2g014700.1	"CIP7, related, identical "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3714.1.S1_s_at	A	A1TS	POPTR_0005s27510	POPTR_0005s27510 (11)	scaffold_5:25136636-25136698(-) (11)	NA	P93006	Probable protein phosphatase 2C 27	AT2G33700.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr3g160100.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3714.2.A1_s_at	A	A1TS	POPTR_0002s00880	POPTR_0002s00880 (11)	scaffold_2:415394-415664(+) (11)	NA	P93006	Probable protein phosphatase 2C 27	AT2G33700.1	Protein phosphatase 2C family protein 	LOC_Os10g39540.1	"protein phosphatase 2C, putative, expressed"	Medtr3g160100.1	Protein phosphatase 2C; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3716.1.S1_s_at	A	A1TS	POPTR_0002s06620	POPTR_0002s06620 (11)	scaffold_2:4437839-4438093(-) (11)	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3716.2.S1_s_at	A	A1MS	POPTR_0002s06620	POPTR_0002s06620 (11)	scaffold_2:4438421-4438730(-) (11)	NA	P93007	Ethylene-responsive transcription factor ERF112	AT2G33710.1	Integrase-type DNA-binding superfamily protein 	LOC_Os04g32620.1	"ethylene-responsive transcription factor ERF114, putative, expressed"	Medtr3g144490.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.372.1.A1_at	A	A1TS	POPTR_0016s12090	POPTR_0016s12090 (10)	scaffold_16:11352647-11352870(-) (10)	NA	Q8L9T7	Histidine-containing phosphotransfer protein 5	AT1G03430.1	histidine-containing phosphotransfer factor 5 	LOC_Os01g54050.1	"histidine-containing phosphotransfer protein, putative, expressed"	Medtr1g111080.1	Hpt 	GO:0000160|two-component signal transduction system (phosphorelay)||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0008150|biological_process||GO:0023052|signaling	GO:0004871|signal transducer activity	NA
Ptp.3720.1.S1_at	A	A1TS	POPTR_0007s04420	POPTR_0007s04420 (10)	scaffold_7:2736039-2736379(-) (10)	NA	Q55EX9	Putative methyltransferase DDB_G0268948	AT5G10830.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g40660.1	"methyltransferase, putative, expressed"	Medtr7g107220.1	Methyltransferase type 11 	GO:0008152|metabolic process	GO:0008168|methyltransferase activity	NA
Ptp.3722.1.S1_s_at	A	A1TS	POPTR_0009s08380	POPTR_0009s08380 (11)	scaffold_9:7693590-7694393(-) (11)	NA	NA	NA	AT5G64460.8	Phosphoglycerate mutase family protein 	LOC_Os04g01230.1	"phosphoglycerate mutase, putative, expressed"	Medtr4g121830.1	"phosphoglycerate mutase-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3723.1.S1_at	A	A1TS	POPTR_0019s08450	POPTR_0019s08450 (9)	scaffold_19:9997012-9998730(+) (9)	NA	Q42656	Alpha-galactosidase	AT3G56310.1	Melibiase family protein 	LOC_Os07g48160.1	"alpha-galactosidase precursor, putative, expressed"	Medtr6g083810.1	"Glycoside hydrolase, clan GH-D "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3724.1.S1_at	A	A1MS	POPTR_0011s02390	POPTR_0011s02390 (9)	scaffold_11:2287250-2287629(-) (9)	NA	Q54JP5	Probable ornithine aminotransferase	AT5G46180.1	ornithine-delta-aminotransferase 	LOC_Os03g44150.1	"aminotransferase, putative, expressed"	Medtr3g163620.1	"Glutamate-1-semialdehyde-2,1-aminomutase; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.3725.1.S1_at	A	A1TS	POPTR_0003s03680	POPTR_0003s03680 (10)	scaffold_3:4329943-4330243(-) (10)	NA	NA	NA	AT2G02410.1	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF901 (InterPro:IPR010298); Has 1151 Blast hits to 1151 proteins in 597 species: Archae - 0; Bacteria - 1105; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). 	LOC_Os03g62610.1	"RNA-binding protein containing a PIN domain, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3728.1.S1_s_at	A	A1TS	POPTR_0016s02090	POPTR_0016s02090 (11)	scaffold_16:1006166-1007001(+) (11)	NA	Q54P70	OTU domain-containing protein DDB_G0284757	AT3G22260.3	Cysteine proteinases superfamily protein 	LOC_Os02g07210.4	"OTU-like cysteine protease family protein, putative, expressed"	Medtr1g076500.1	"Calcium-binding EF-hand; Ovarian tumour, otubain "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.373.1.A1_s_at	A	A1TS	POPTR_0005s07020	POPTR_0005s07020 (11)	scaffold_5:4704800-4705304(-) (11)	NA	Q9FFN4	Beta-galactosidase 6	AT5G63800.1	Glycosyl hydrolase family 35 protein 	LOC_Os05g35360.1	"beta-galactosidase 7 precursor, putative, expressed"	Medtr3g142640.1	Galactose-binding like 	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.3730.1.A1_at	A	A1TS	POPTR_0003s12890	POPTR_0003s12890 (11)	scaffold_3:13330845-13331183(+) (11)	NA	Q91WL8	WW domain-containing oxidoreductase	AT4G23420.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os09g39670.1	"oxidoreductase, short chain dehydrogenase/reductase family domain containing family, expressed"	AC233662_60.1	Short-chain dehydrogenase/reductase SDR AC233662.1 276846-273702 F EGN_Mt090430 200	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3731.1.S1_at	A	A1TS	POPTR_0013s15440	POPTR_0013s15440 (11)	scaffold_13:15425347-15425803(-) (11)	NA	O04682	Pathogenesis-related genes transcriptional activator PTI6	AT4G27950.1	cytokinin response factor 4 	LOC_Os01g46870.1	"AP2 domain containing protein, expressed"	Medtr3g124710.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3732.2.A1_at	A	A1MS	POPTR_0017s05500	POPTR_0017s05500 (10)	scaffold_17:4356623-4356834(+) (10)	NA	Q8LDW8	"Probable hydroxyacylglutathione hydrolase 2, chloroplast"	AT1G06130.2	glyoxalase 2-4 	LOC_Os09g34100.1	"metallo-beta-lactamase family protein, putative, expressed"	Medtr4g092510.1	Beta-lactamase-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3735.1.S1_s_at	A	A1TS	POPTR_0019s02560	POPTR_0019s02560 (11)	scaffold_19:2328613-2328844(-) (11)	NA	P29421	Alpha-amylase/subtilisin inhibitor	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.3736.1.A1_at	A	A1TS	POPTR_0016s09980	POPTR_0016s09980 (11)	scaffold_16:8105388-8106258(-) (11)	NA	NA	NA	AT3G54020.1	Arabidopsis Inositol phosphorylceramide synthase 1 	LOC_Os01g63060.1	"phosphatidic acid phosphatase-related, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3738.1.S1_s_at	A	A1TS	POPTR_0017s09680	POPTR_0017s09680 (11)	scaffold_17:8335089-8335555(-) (11)	NA	NA	NA	AT5G40960.1	Protein of unknown function (DUF 3339) 	LOC_Os01g69890.1	expressed protein	Medtr3g104120.1	"localized according to blastn similarity to EST sequences; therefore, the coding span corresponds only to an area of similarity since the initation codon and stop codon could not be precisely determined, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3739.1.S1_s_at	A	A1TS	POPTR_0004s03620	POPTR_0004s03620 (11)	scaffold_4:2506437-2507744(-) (11)	NA	Q53FA7	Quinone oxidoreductase PIG3	AT4G21580.1	"oxidoreductase, zinc-binding dehydrogenase family protein "	LOC_Os02g56180.1	"dehydrogenase, putative, expressed"	Medtr2g014170.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.374.1.A1_a_at	A	A1TS	POPTR_0011s03020	POPTR_0011s03020 (11)	scaffold_11:2999752-2999802(+) (11)	NA	O81481	Eukaryotic translation initiation factor 4E-1	AT4G18040.1	eukaryotic translation initiation factor 4E 	LOC_Os01g73880.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr2g021870.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.374.2.A1_at	A	A1MS	POPTR_0011s03020	POPTR_0011s03020 (11)	scaffold_11:2999118-2999615(+) (11)	NA	O81481	Eukaryotic translation initiation factor 4E-1	AT4G18040.1	eukaryotic translation initiation factor 4E 	LOC_Os01g73880.1	"eukaryotic translation initiation factor, putative, expressed"	Medtr2g021870.1	Eukaryotic translation initiation factor 4E (eIF-4E) 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003723|RNA binding||GO:0003743|translation initiation factor activity	GO:0005737|cytoplasm
Ptp.3741.1.S1_s_at	A	A1TS	POPTR_0008s13030	POPTR_0008s13030 (11)	scaffold_8:8494327-8495602(+) (11)	NA	Q9SSK5	MLP-like protein 43	AT1G70890.1	MLP-like protein 43 	NA	NA	Medtr1g034930.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.3742.2.S1_s_at	A	A1TS	POPTR_0002s06730	POPTR_0002s06730 (11)	scaffold_2:4531751-4532887(-) (11)	NA	Q6NPF9	"Thioredoxin Y1, chloroplastic"	AT1G76760.1	thioredoxin Y1 	LOC_Os01g73234.2	"thioredoxin, putative, expressed"	Medtr1g125070.1	Thioredoxin-related; Thioredoxin domain 2; 	GO:0045454|cell redox homeostasis	NA	NA
Ptp.3743.1.S1_at	A	A1TS	POPTR_0004s15270	POPTR_0004s15270 (11)	scaffold_4:15939532-15939836(+) (11)	NA	Q940H6	Serine/threonine-protein kinase SRK2E	AT4G33950.1	Protein kinase superfamily protein 	LOC_Os03g41460.1	"CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr8g096830.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3744.1.S1_s_at	A	A1TS	POPTR_0010s01400	POPTR_0010s01400 (9)	scaffold_10:1506997-1507466(-) (10)	NA	Q8L9T5	RING-H2 finger protein ATL2	AT3G16720.1	TOXICOS EN LEVADURA 2 	LOC_Os06g09310.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr8g026830.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3745.1.S1_at	A	A2TS	POPTR_0014s11630	POPTR_0014s11630 (11)//POPTR_0014s11680 (10)	scaffold_14:8629501-8629929(+) (11)//scaffold_14:8660958-8661383(-) (10)	NA	Q9D0D4	Probable dimethyladenosine transferase	AT2G47420.1	Ribosomal RNA adenine dimethylase family protein 	LOC_Os10g10434.1	"dimethyladenosine transferase, putative, expressed"	Medtr3g009000.1	Ribosomal RNA adenine methylase transferase 	GO:0044260|cellular macromolecule metabolic process||GO:0000154|rRNA modification	"GO:0000179|""rRNA (adenine-N6,N6-)-dimethyltransferase activity"""	NA
Ptp.3747.1.S1_s_at	A	A1TS	POPTR_0001s15400	POPTR_0001s15400 (11)	scaffold_1:12225176-12225467(+) (11)	NA	O80341	Ethylene-responsive transcription factor 5	AT5G47230.1	ethylene responsive element binding factor 5 	LOC_Os02g43820.1	"AP2 domain containing protein, expressed"	Medtr8g105180.1	Pathogenesis-related transcriptional factor and ERF 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003700|transcription factor activity	NA
Ptp.3749.1.S1_at	A	A1TS	POPTR_0004s24370	POPTR_0004s24370 (11)	scaffold_4:23068981-23069585(+) (11)	NA	Q9M2E2	(+)-neomenthol dehydrogenase	AT3G61220.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g48640.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr8g034700.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3750.2.S1_at	A	A1TS	POPTR_0008s02090	POPTR_0008s02090 (11)	scaffold_8:1003899-1004106(+) (11)	NA	P46301	40S ribosomal protein S25	AT2G16360.1	Ribosomal protein S25 family protein 	LOC_Os09g39540.2	"40S ribosomal protein S25, putative, expressed"	Medtr2g107670.1	S25 ribosomal protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3752.1.S1_at	A	A1TS	POPTR_0001s15700	POPTR_0001s15700 (10)	scaffold_1:12514884-12515476(-) (11)	NA	Q9FGL2	Aquaporin TIP2-3	AT5G47450.1	tonoplast intrinsic protein 2;3 	LOC_Os02g44080.1	"aquaporin protein, putative, expressed"	Medtr5g012870.1	Major intrinsic protein 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3753.1.S1_s_at	A	A3TS	POPTR_0012s00900	POPTR_0012s00900 (11)//POPTR_0012s03320 (11)//POPTR_0015s05610 (11)	scaffold_12:581384-582430(-) (11)//scaffold_12:2638607-2639655(+) (11)//scaffold_15:5952585-5953864(-) (11)	NA	Q54NM9	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3	AT1G34130.1	staurosporin and temperature sensitive 3-like b 	LOC_Os04g57890.1	"oligosaccharyl transferase, putative, expressed"	Medtr6g089790.1	"Oligosaccharyl transferase, STT3 subunit "	GO:0006486|protein amino acid glycosylation	GO:0004576|oligosaccharyl transferase activity	GO:0016020|membrane
Ptp.3755.1.S1_at	A	A1TS	POPTR_0003s01820	POPTR_0003s01820 (11)	scaffold_3:1697456-1697906(+) (11)	NA	Q9FY75	Potassium transporter 7	AT5G09400.1	K+ uptake permease 7 	LOC_Os07g32530.1	"potassium transporter, putative, expressed"	Medtr2g008870.1	K+ potassium transporter 	GO:0006813|potassium ion transport	GO:0015079|potassium ion transmembrane transporter activity	GO:0016020|membrane
Ptp.3758.1.S1_at	A	A1TS	POPTR_0004s17950	POPTR_0004s17950 (11)	scaffold_4:17989151-17990211(+) (11)	NA	Q9ZNT3	Actin-depolymerizing factor 5	AT2G16700.1	actin depolymerizing factor 5 	LOC_Os03g13950.1	"actin-depolymerizing factor, putative, expressed"	AC233662_56.1	"Actin-binding, cofilin/tropomyosin type AC233662.1 257418-259371 F EGN_Mt090430 200"	NA	GO:0003779|actin binding	GO:0005622|intracellular
Ptp.3760.1.S1_at	A	A1MS	POPTR_0006s06610	POPTR_0006s06610 (10)	scaffold_6:4803145-4803650(+) (10)	NA	NA	NA	NA	NA	NA	NA	Medtr8g120930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3762.2.S1_s_at	A	A2TS	POPTR_0001s02430	POPTR_0003s09110 (10)//POPTR_0001s02430 (10)	scaffold_1:1882533-1883528(-) (10)//scaffold_3:10433178-10434177(+) (10)	NA	Q8H100	Probable ADP-ribosylation factor GTPase-activating protein AGD8	AT4G17890.1	ARF-GAP domain 8 	LOC_Os03g63710.1	"GTPase-activating protein, putative, expressed"	Medtr8g078470.1	Arf GTPase activating protein 	GO:0023051|regulation of signaling process||GO:0032312|regulation of ARF GTPase activity||GO:0023046|signaling process||GO:0023052|signaling||GO:0023060|signal transmission	GO:0008270|zinc ion binding||GO:0008060|ARF GTPase activator activity	NA
Ptp.3764.1.A1_s_at	A	A1TS	POPTR_0002s12950	POPTR_0002s12950 (11)	scaffold_2:9622446-9622480(+) (11)	NA	Q2MY58	Patatin group A-3	AT2G26560.1	phospholipase A 2A 	LOC_Os09g28770.1	"patatin, putative, expressed"	Medtr1g024960.1	Patatin 	GO:0006629|lipid metabolic process	NA	NA
Ptp.3765.1.S1_at	A	A1TS	POPTR_0006s01680	POPTR_0006s01680 (10)	scaffold_6:1028864-1030202(-) (10)	NA	Q920Q6	RNA-binding protein Musashi homolog 2	AT3G07810.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os11g41890.1	"RNA recognition motif containing protein, putative, expressed"	Medtr3g076980.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3767.1.S1_at	A	A1MA	POPTR_0008s19310	POPTR_0008s19310 (9)	scaffold_8:13259400-13259602(+) (9)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.3772.1.S1_at	A	A1TS	POPTR_0014s14910	POPTR_0014s14910 (10)	scaffold_14:10949299-10950270(-) (10)	NA	Q9DCQ3	Vesicle transport protein GOT1A	AT1G05785.2	Got1/Sft2-like vescicle transport protein family 	LOC_Os02g39070.2	"vesicle transport protein GOT1B, putative, expressed"	Medtr7g005950.1	Got1-like protein 	GO:0016192|vesicle-mediated transport	NA	NA
Ptp.3775.2.S1_a_at	A	A1TS	POPTR_0003s05940	POPTR_0003s05940 (11)	scaffold_3:7308261-7309121(-) (11)	NA	Q8LBK6	"Monothiol glutaredoxin-S15, mitochondrial"	AT3G15660.2	glutaredoxin 4 	LOC_Os01g34620.9	"OsGrx_S15.1 - glutaredoxin subgroup II, expressed"	Medtr2g125790.1	Glutaredoxin-related protein; Glutaredoxin active site 	GO:0045454|cell redox homeostasis	GO:0009055|electron carrier activity||GO:0015035|protein disulfide oxidoreductase activity	NA
Ptp.3778.1.S1_s_at	A	A1TS	POPTR_0007s14510	POPTR_0007s14510 (11)	scaffold_7:14282098-14283629(-) (11)	NA	P19446	"Malate dehydrogenase, glyoxysomal"	AT2G22780.1	peroxisomal NAD-malate dehydrogenase 1 	LOC_Os12g43630.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g014880.1	"Malate dehydrogenase, active site "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.378.1.A1_at	A	A1TS	POPTR_0003s06940	POPTR_0003s06940 (9)	scaffold_3:8520715-8520847(-) (9)	NA	O65351	Subtilisin-like protease	AT3G14240.1	Subtilase family protein 	LOC_Os08g35090.1	"OsSub56 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.378.1.A1_s_at	A	A1TS	POPTR_0003s06940	POPTR_0003s06940 (11)	scaffold_3:8520889-8521099(-) (11)	NA	O65351	Subtilisin-like protease	AT3G14240.1	Subtilase family protein 	LOC_Os08g35090.1	"OsSub56 - Putative Subtilisin homologue, expressed"	Medtr8g026350.1	"Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3781.1.S1_at	A	A1TS	POPTR_0007s10010	POPTR_0007s10010 (10)	scaffold_7:9616435-9616958(+) (10)	NA	Q9SN23	LOB domain-containing protein 38	AT3G49940.1	LOB domain-containing protein 38 	LOC_Os03g33090.1	"DUF260 domain containing protein, putative, expressed"	Medtr8g099480.1	Protein of unknown function DUF260 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3784.1.A1_s_at	A	A1TS	POPTR_0014s08990	POPTR_0014s08990 (11)	scaffold_14:6648566-6648798(+) (11)	NA	Q99089	Common plant regulatory factor 1	AT2G46270.1	G-box binding factor 3 	LOC_Os05g49420.1	"transcription factor, putative, expressed"	Medtr7g143570.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3784.2.S1_at	A	A1TS	POPTR_0014s08990	POPTR_0014s08990 (10)	scaffold_14:6645819-6647719(+) (10)	NA	Q99089	Common plant regulatory factor 1	AT2G46270.1	G-box binding factor 3 	LOC_Os05g49420.1	"transcription factor, putative, expressed"	Medtr7g143570.1	"bZIP transcription factor, bZIP_1; G-box binding, MFMR "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.3785.1.S1_a_at	A	A1TS	POPTR_0003s13920	POPTR_0003s13920 (11)	scaffold_3:14150785-14150838(+) (11)	POPTR_0001s10550 (7)	NA	NA	AT1G64385.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 66 Blast hits to 66 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os05g49750.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3786.1.S1_at	A	A1TS	POPTR_0003s13250	POPTR_0003s13250 (9)	scaffold_3:13643288-13643715(+) (9)	NA	O04609	WRKY transcription factor 22	AT4G01250.1	WRKY family transcription factor 	LOC_Os02g16540.1	"OsWRKY39v2 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr7g088890.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.3788.1.A1_s_at	A	A1MS	POPTR_0014s10460	POPTR_0014s10460 (11)	scaffold_14:7809151-7809443(-) (11)	NA	NA	NA	AT4G01575.1	"serine protease inhibitor, Kazal-type family protein "	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3790.1.S1_s_at	A	A1TS	POPTR_0009s05140	POPTR_0009s05140 (11)	scaffold_9:5298658-5298910(+) (11)	NA	Q06716	ATP-dependent Clp protease ATP-binding subunit ClpL	AT1G07200.2	Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein 	LOC_Os11g01330.1	expressed protein	Medtr5g079400.1	heat shock protein-related 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3791.1.S1_s_at	A	A1TS	POPTR_0012s04620	POPTR_0012s04620 (11)	scaffold_12:3956341-3956617(+) (11)	NA	Q9LMS3	Laccase-1	AT1G18140.1	laccase 1 	LOC_Os01g62480.1	"laccase precursor protein, putative, expressed"	Medtr7g064780.1	Copper-resistance protein CopA 	GO:0055114|oxidation reduction	GO:0005507|copper ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.3792.1.S1_s_at	A	A1TS	POPTR_0014s08830	POPTR_0014s08830 (11)	scaffold_14:6535487-6535740(-) (11)	NA	Q5RFQ0	rRNA-processing protein FCF1 homolog	AT2G46230.1	PIN domain-like family protein 	LOC_Os06g06410.2	"rRNA-processing protein FCF, putative, expressed"	Medtr7g143410.1	"Nucleotide binding protein, PINc "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3793.1.S1_at	A	A1TS	POPTR_0003s08760	POPTR_0003s08760 (11)	scaffold_3:10137658-10138516(-) (11)	NA	P49359	"Glycine cleavage system H protein, mitochondrial"	AT1G32470.1	Single hybrid motif superfamily protein 	LOC_Os10g37180.1	"glycine cleavage system H protein, putative, expressed"	Medtr5g014430.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
Ptp.3793.1.S1_s_at	A	A1TS	POPTR_0003s08760	POPTR_0003s08760 (11)	scaffold_3:10137713-10138774(-) (11)	NA	P49359	"Glycine cleavage system H protein, mitochondrial"	AT1G32470.1	Single hybrid motif superfamily protein 	LOC_Os10g37180.1	"glycine cleavage system H protein, putative, expressed"	Medtr5g014430.1	"2-oxo acid dehydrogenase, lipoyl-binding site "	GO:0006546|glycine catabolic process||GO:0044281|small molecule metabolic process||GO:0044282|small molecule catabolic process||GO:0034641|cellular nitrogen compound metabolic process	NA	GO:0005960|glycine cleavage complex||GO:0005739|mitochondrion
Ptp.3799.1.S1_s_at	A	A1TS	POPTR_0007s00370	POPTR_0007s00370 (11)	scaffold_7:124194-124710(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr3g151520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.380.1.A1_s_at	A	A1TS	POPTR_0016s14080	POPTR_0016s14080 (11)	scaffold_16:13322009-13322332(+) (11)	NA	NA	NA	AT2G38370.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr3g097420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.380.2.S1_at	A	A1TS	POPTR_0016s14080	POPTR_0016s14080 (9)	scaffold_16:13321092-13321324(+) (9)	NA	NA	NA	AT2G38370.1	Plant protein of unknown function (DUF827) 	LOC_Os03g22040.1	expressed protein	Medtr3g097420.1	"Protein of unknown function DUF827, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3801.1.S1_at	A	A1TA	POPTR_0002s05850	POPTR_0002s05850 (9)	scaffold_2:3843552-3844026(-) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3802.1.A1_a_at	A	A1TS	POPTR_0002s16150	POPTR_0002s16150 (11)	scaffold_2:12068425-12068579(+) (11)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g40100.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.3802.1.A1_at	A	A1TS	POPTR_0002s16150	POPTR_0002s16150 (10)	scaffold_2:12067591-12068393(+) (10)	NA	Q8GUH1	U-box domain-containing protein 33	AT2G45910.1	U-box domain-containing protein kinase family protein 	LOC_Os10g40100.1	"protein kinase, putative, expressed"	Medtr7g087420.1	Protein kinase; U box 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0016567|protein ubiquitination	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0004842|ubiquitin-protein ligase activity	GO:0000151|ubiquitin ligase complex
Ptp.3803.2.A1_a_at	A	A1TS	POPTR_0006s03560	POPTR_0006s03560 (11)	scaffold_6:2328759-2329407(-) (11)	NA	Q9M1K1	Transcription factor ORG2	AT3G56970.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g72370.3	"helix-loop-helix DNA-binding domain containing protein, expressed"	Medtr7g107450.1	Helix-loop-helix DNA-binding 	GO:0034645|cellular macromolecule biosynthetic process||GO:0045449|regulation of transcription	GO:0030528|transcription regulator activity	NA
Ptp.3804.1.S1_at	A	A1TS	POPTR_0013s10120	POPTR_0013s10120 (10)	scaffold_13:10116492-10117490(+) (10)	NA	Q9FIJ7	"Probable adenylate kinase 2, chloroplastic"	AT5G47840.1	adenosine monophosphate kinase 	LOC_Os08g01770.1	"adenylate kinase, putative, expressed"	Medtr4g041640.1	"Adenylate/cytidine kinase, N-terminal "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0004017|adenylate kinase activity||GO:0005524|ATP binding	NA
Ptp.3805.1.S1_at	A	A1TS	POPTR_0017s11420	POPTR_0017s11420 (11)	scaffold_17:11184814-11185062(+) (11)	NA	Q9FM19	Hypersensitive-induced response protein 1	AT5G62740.1	SPFH/Band 7/PHB domain-containing membrane-associated protein family 	LOC_Os05g51420.1	"hypersensitive-induced response protein, putative, expressed"	Medtr8g113260.1	Band 7 protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3806.1.A1_at	A	A1TS	POPTR_0005s24860	POPTR_0005s24860 (11)	scaffold_5:23290522-23290951(+) (11)	NA	P42158	Casein kinase I isoform delta-like	AT4G28540.1	casein kinase I-like 6 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.3808.2.S1_at	A	A1MS	POPTR_0013s15740	POPTR_0013s15740 (11)	scaffold_13:15640011-15640744(+) (11)	NA	Q8K2U2	Probable alpha-ketoglutarate-dependent dioxygenase ABH6	AT4G20350.2	oxidoreductases 	LOC_Os10g28410.1	"GA19388-PA, putative, expressed"	Medtr6g070830.1	"Alkylated DNA repair protein alkB homolog 6, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3809.1.S1_at	A	A1TS	POPTR_0010s06630	POPTR_0010s06630 (10)	scaffold_10:7926270-7926488(+) (10)//scaffold_468:4819-5021(-) (9)	NA	NA	NA	AT1G27850.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40070.1); Has 9215 Blast hits to 5316 proteins in 473 species: Archae - 6; Bacteria - 773; Metazoa - 3392; Fungi - 1710; Plants - 539; Viruses - 143; Other Eukaryotes - 2652 (source: NCBI BLink). 	LOC_Os12g13670.2	expressed protein	Medtr3g103410.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3810.1.S1_at	A	A1TS	POPTR_0001s40000	POPTR_0001s40000 (11)	scaffold_1:39326344-39326618(-) (11)//scaffold_1:39340564-39340858(-) (11)	NA	P16273	Pathogen-related protein	AT1G78780.2	pathogenesis-related family protein 	LOC_Os01g53090.1	"pathogen-related protein, putative, expressed"	Medtr8g068150.1	"Pathogen-related protein, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3811.2.S1_s_at	A	A1TS	POPTR_0013s04660	POPTR_0013s04660 (11)	scaffold_13:3206621-3207350(+) (11)	NA	P46976	Glycogenin-1	AT5G18480.1	plant glycogenin-like starch initiation protein 6 	LOC_Os02g41520.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr1g093950.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.3812.1.S1_s_at	A	A1TS	POPTR_0014s17720	POPTR_0014s17720 (11)	scaffold_14:13978835-13980337(-) (11)	NA	O23051	Ent-kaurenoic acid oxidase 1	AT1G05160.1	"cytochrome P450, family 88, subfamily A, polypeptide 3 "	LOC_Os06g02019.1	"cytochrome P450, putative, expressed"	Medtr5g014420.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.3813.1.S1_at	A	A1TS	POPTR_0009s03230	POPTR_0009s03230 (11)	scaffold_9:3922344-3922834(+) (11)	NA	O82598	Aquaporin TIP1-3	AT4G01470.1	tonoplast intrinsic protein 1;3 	LOC_Os01g74450.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.3814.1.S1_s_at	A	A1TS	POPTR_0017s00400	POPTR_0017s00400 (11)	scaffold_17:124771-125527(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3815.1.S1_at	A	A1TS	POPTR_0009s15990	POPTR_0009s15990 (10)	scaffold_9:12252795-12253742(+) (10)	NA	Q9ZUH5	Short-chain dehydrogenase/reductase 2	AT2G24190.2	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os07g48640.1	"short-chain dehydrogenase/reductase, putative, expressed"	Medtr3g111280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3818.1.A1_s_at	A	A1TS	POPTR_0002s15100	POPTR_0002s15100 (11)	scaffold_2:11204334-11205560(-) (11)	NA	Q54U63	BEACH domain-containing protein lvsC	AT2G45540.1	WD-40 repeat family protein / beige-related 	LOC_Os04g46894.1	"beige/BEACH domain containing protein, expressed"	Medtr7g083230.1	Concanavalin A-like lectin/glucanase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3819.1.S1_at	A	A1TS	POPTR_0007s03630	POPTR_0007s03630 (10)	scaffold_7:2085133-2085507(+) (10)	NA	P13087	Miraculin	AT1G73260.1	kunitz trypsin inhibitor 1 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.3821.1.S1_s_at	A	A1TS	POPTR_0016s14220	POPTR_0016s14220 (11)	scaffold_16:13454647-13455169(+) (11)	NA	NA	NA	AT3G51610.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 53 Blast hits to 53 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). 	LOC_Os05g07640.1	expressed protein	Medtr7g080110.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3822.1.S1_s_at	A	A1TS	POPTR_0005s08630	POPTR_0005s08630 (11)	scaffold_5:5997894-5997988(-) (11)	NA	NA	NA	AT2G21960.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56180.1); Has 224 Blast hits to 222 proteins in 59 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). 	LOC_Os04g54640.1	"peptidase, cysteine peptidase active site, putative, expressed"	Medtr2g077520.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3823.1.S1_at	A	A1TS	POPTR_0007s15300	POPTR_0007s15300 (10)	scaffold_7:14880074-14880548(+) (10)	NA	NA	NA	AT3G19990.1	"unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 118 Blast hits to 118 proteins in 41 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). "	LOC_Os02g58150.1	expressed protein	Medtr1g047000.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3824.1.S1_at	A	A1TS	POPTR_0001s22670	POPTR_0001s22670 (11)	scaffold_1:21562102-21562237(+) (11)	NA	Q9FMR5	Vesicle-associated membrane protein 714	AT5G22360.1	vesicle-associated membrane protein 714 	LOC_Os10g06540.1	"vesicle-associated membrane protein, putative, expressed"	Medtr5g096480.1	Longin-like 	GO:0016192|vesicle-mediated transport	NA	GO:0016021|integral to membrane
Ptp.3826.1.A1_s_at	A	A2TS	POPTR_0004s03290	POPTR_0004s03290 (11)//POPTR_0004s03300 (11)	scaffold_4:2241986-2242577(+) (11)//scaffold_4:2247093-2247703(+) (11)	NA	P43177	Major pollen allergen Bet v 1-D/H	NA	NA	LOC_Os12g36880.1	"pathogenesis-related Bet v I family protein, putative, expressed"	Medtr8g138430.1	Bet v I allergen 	GO:0006952|defense response||GO:0009607|response to biotic stimulus	NA	NA
Ptp.3827.1.S1_at	A	A1TS	POPTR_0019s04090	POPTR_0019s04090 (9)	scaffold_19:4172593-4173631(-) (10)	NA	Q92616	Translational activator GCN1	AT1G64790.1	ILITYHIA 	LOC_Os03g51140.1	"HEAT repeat family protein, putative, expressed"	Medtr7g143040.1	Armadillo-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3828.1.A1_at	A	A1TS	POPTR_0017s11500	POPTR_0017s11500 (11)	scaffold_17:11241898-11242372(-) (11)	NA	Q42510	Pattern formation protein EMB30	AT1G13980.2	sec7 domain-containing protein 	LOC_Os03g46330.1	"pattern formation protein EMB30, putative, expressed"	Medtr5g087940.1	SEC7-like 	GO:0023051|regulation of signaling process||GO:0032012|regulation of ARF protein signal transduction||GO:0023060|signal transmission||GO:0023046|signaling process||GO:0023052|signaling	GO:0005086|ARF guanyl-nucleotide exchange factor activity	GO:0005622|intracellular
Ptp.3829.1.S1_at	A	A1TS	POPTR_0003s16460	POPTR_0003s16460 (11)	scaffold_3:16053548-16053927(+) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT3G43740.1	Leucine-rich repeat (LRR) family protein 	LOC_Os03g32580.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr7g005120.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.3831.1.S1_at	A	A1TS	POPTR_0016s14560	POPTR_0016s14560 (11)	scaffold_16:13751554-13751709(+) (11)	NA	Q9SCZ4	Receptor-like protein kinase FERONIA	AT3G51550.1	Malectin/receptor-like protein kinase family protein 	LOC_Os01g56330.1	"TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed"	Medtr8g116250.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3832.1.S1_at	A	A1TS	POPTR_0014s16060	POPTR_0014s16060 (10)	scaffold_14:12150885-12151266(+) (10)	NA	Q9SFC7	F-box protein At3g07870	AT3G07870.1	F-box and associated interaction domains-containing protein 	LOC_Os09g30180.2	"OsFBX331 - F-box domain containing protein, expressed"	Medtr3g008640.1	Cyclin-like F-box; F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3835.1.S1_at	A	A1TS	POPTR_0491s00200	POPTR_0491s00200 (11)	scaffold_491:9865-9981(-) (11)	NA	NA	NA	AT3G59680.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os04g41860.1	expressed protein	Medtr4g128470.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3836.1.A1_at	A	A1TS	POPTR_0015s05530	POPTR_0015s05530 (11)	scaffold_15:5860556-5861219(-) (11)	NA	P0C042	Uncharacterized protein At4g15970	AT1G14590.1	Nucleotide-diphospho-sugar transferase family protein 	LOC_Os04g49590.1	"regulatory protein, putative, expressed"	Medtr6g090280.1	"Uncharacterized protein At4g15970, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3838.2.S1_at	A	A1TA	POPTR_0014s04050	POPTR_0014s04050 (11)	scaffold_14:3221665-3221758(+) (11)	NA	Q08BI9	Coiled-coil domain-containing protein 109A	AT5G42610.1	Protein of unknown function (DUF607) 	LOC_Os10g35770.1	"E2F-related protein, putative, expressed"	Medtr8g093800.1	Protein of unknown function DUF607 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3839.1.S1_at	A	A1TS	POPTR_0006s08450	POPTR_0006s08450 (11)	scaffold_6:6166511-6168251(+) (11)	NA	Q8LCY2	"Iron-sulfur assembly protein IscA-like 2, mitochondrial"	AT5G03905.1	Iron-sulphur cluster biosynthesis family protein 	LOC_Os08g28230.1	"IscA-like iron-sulfur assembly protein, mitochondrial precursor, putative, expressed"	Medtr7g127380.1	HesB/YadR/YfhF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.384.1.A1_at	A	A1TS	POPTR_0016s06230	POPTR_0016s06230 (9)	scaffold_16:4171532-4171764(-) (9)	NA	NA	NA	AT5G06610.1	Protein of unknown function (DUF620) 	LOC_Os03g07120.1	expressed protein	Medtr1g023660.1	Protein of unknown function DUF620 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3840.1.S1_s_at	A	A1TS	POPTR_0015s12020	POPTR_0015s12020 (11)	scaffold_15:12456399-12462942(+) (11)	NA	NA	NA	AT5G61820.1	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os08g42590.3	"mtN19, putative, expressed"	Medtr2g129900.1	Stress up-regulated Nod 19 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3842.1.A1_a_at	A	A1TS	POPTR_0003s20270	POPTR_0003s20270 (11)	scaffold_3:18793711-18795198(+) (11)	NA	NA	NA	AT5G13470.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os01g71262.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3846.1.S1_at	A	A1TS	POPTR_0003s08140	POPTR_0003s08140 (11)	scaffold_3:9563160-9563827(-) (11)	NA	O23547	Expansin-like B1	AT4G17030.1	expansin-like B1 	LOC_Os07g31390.1	"beta-expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3846.1.S1_s_at	A	A1TS	POPTR_0003s08140	POPTR_0003s08140 (11)	scaffold_3:9563194-9563695(-) (11)	NA	O23547	Expansin-like B1	AT4G17030.1	expansin-like B1 	LOC_Os07g31390.1	"beta-expansin precursor, putative, expressed"	Medtr5g013580.1	"Expansin 45, endoglucanase-like "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3849.1.S1_at	A	A1TS	POPTR_0015s06800	POPTR_0015s06800 (9)	scaffold_15:7842906-7842940(+) (9)	NA	P27694	Replication protein A 70 kDa DNA-binding subunit	AT5G08020.1	RPA70-kDa subunit B 	LOC_Os03g11540.1	"RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.3849.1.S1_s_at	A	A1TS	POPTR_0015s06800	POPTR_0015s06800 (11)	scaffold_15:7843010-7843664(+) (11)	NA	P27694	Replication protein A 70 kDa DNA-binding subunit	AT5G08020.1	RPA70-kDa subunit B 	LOC_Os03g11540.1	"RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.3853.1.S1_at	A	A1MS	POPTR_0012s07910	POPTR_0012s07910 (9)	scaffold_12:8907113-8907628(+) (9)	NA	NA	NA	AT3G48050.2	BAH domain ;TFIIS helical bundle-like domain 	LOC_Os02g50840.2	"BAH domain containing protein, putative, expressed"	Medtr5g010300.1	"Bromo adjacent region; Transcription elongation factor S-II, central region "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006350|transcription	GO:0003677|DNA binding||GO:0030528|transcription regulator activity||GO:0005515|protein binding	GO:0005634|nucleus
Ptp.3855.1.S1_a_at	A	A1TS	POPTR_0009s04320	POPTR_0009s04320 (9)	scaffold_9:4750331-4750427(+) (9)	NA	NA	NA	AT5G59080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3855.1.S1_s_at	A	A1TS	POPTR_0009s04320	POPTR_0009s04320 (11)	scaffold_9:4749307-4749755(+) (11)	NA	NA	NA	AT5G59080.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	Medtr7g070920.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3856.1.S1_s_at	A	A1TS	POPTR_0006s28210	POPTR_0006s28210 (11)	scaffold_6:25977173-25979413(-) (11)	NA	Q6GR43	Transmembrane protein 85	AT5G10780.1	"CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g24580.1	"transmembrane protein 85, putative, expressed"	Medtr1g016570.1	Protein of unknown function DUF1077 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3857.1.S1_s_at	A	A1TS	POPTR_0010s02450	POPTR_0010s02450 (11)	scaffold_10:2835082-2835773(-) (11)	POPTR_0008s22590 (7)	Q94AH6	Cullin-1	AT4G02570.4	cullin 1 	LOC_Os01g27150.1	"cullin, putative, expressed"	Medtr8g139160.1	Cullin; Winged helix repressor DNA-binding 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0031625|ubiquitin protein ligase binding	GO:0031461|cullin-RING ubiquitin ligase complex
Ptp.3858.1.S1_at	A	A1TS	POPTR_0007s12660	POPTR_0007s12660 (11)	scaffold_7:12913377-12913781(+) (11)	NA	Q9FGY4	F-box protein At5g49610	AT5G49610.1	F-box family protein 	LOC_Os03g56500.1	expressed protein	Medtr2g037610.1	F-box protein interaction domain 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.386.2.A1_s_at	A	A1TS	POPTR_0011s13380	POPTR_0011s13380 (11)	scaffold_11:16145068-16145110(+) (11)	NA	Q43472	Glycine-rich RNA-binding protein blt801	AT5G54580.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os08g04440.1	"RNA recognition motif containing protein, putative, expressed"	Medtr7g118370.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.3864.1.S1_at	A	A1TS	POPTR_0017s12050	POPTR_0017s12050 (9)	scaffold_17:12177951-12178578(-) (9)	NA	NA	NA	AT3G01175.1	Protein of unknown function (DUF1666) 	LOC_Os09g24700.1	expressed protein	Medtr7g009560.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3865.2.S1_a_at	A	A1TS	POPTR_0019s10370	POPTR_0019s10370 (10)	scaffold_19:11930865-11933988(-) (10)	NA	NA	NA	AT1G71480.1	Nuclear transport factor 2 (NTF2) family protein 	LOC_Os09g09320.1	"nuclear transport factor, putative, expressed"	NA	NA	GO:0006810|transport	NA	GO:0005622|intracellular
Ptp.3867.1.S1_s_at	A	A1TS	POPTR_0005s17300	POPTR_0005s17300 (11)	scaffold_5:14610890-14612201(+) (11)	NA	P46266	14-3-3-like protein	AT1G78300.1	general regulatory factor 2 	LOC_Os08g33370.2	"14-3-3 protein, putative, expressed"	Medtr3g150430.1	14-3-3 protein 	NA	GO:0019904|protein domain specific binding	NA
Ptp.3869.1.S1_at	A	A1TS	POPTR_0007s14630	POPTR_0007s14630 (9)	scaffold_7:14381789-14382314(+) (9)	NA	Q9M2Y9	Transcription factor RAX3	AT3G49690.1	myb domain protein 84 	LOC_Os03g56090.1	"MYB family transcription factor, putative, expressed"	Medtr5g015140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.387.1.A1_a_at	A	A1TS	POPTR_0010s05400	POPTR_0010s05400 (11)	scaffold_10:6862014-6862458(+) (11)	NA	Q8LPT9	"Alpha-glucan water dikinase, chloroplastic"	AT1G10760.1	"Pyruvate phosphate dikinase, PEP/pyruvate binding domain "	LOC_Os06g30310.1	"alpha-glucan water dikinase, chloroplast precursor, putative, expressed"	NA	NA	GO:0016310|phosphorylation	GO:0005524|ATP binding||GO:0016301|kinase activity	NA
Ptp.3870.1.S1_s_at	A	A1TS	POPTR_0015s00840	POPTR_0015s00840 (11)	scaffold_15:490255-490426(+) (11)	NA	Q5W274	Pleiotropic drug resistance protein 3	AT3G53480.1	pleiotropic drug resistance 9 	LOC_Os02g32690.1	"pleiotropic drug resistance protein 15, putative, expressed"	Medtr8g134180.1	AAA ATPase; 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	GO:0016020|membrane
Ptp.3871.1.S1_s_at	A	A1TS	POPTR_0003s06090	POPTR_0003s06090 (11)	scaffold_3:7497936-7498403(-) (11)	NA	NA	NA	AT1G80160.1	Lactoylglutathione lyase / glyoxalase I family protein 	LOC_Os05g07940.1	"glyoxalase family protein, putative, expressed"	Medtr8g119830.1	Glyoxalase/bleomycin resistance protein/dioxygenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3872.1.S1_at	A	A1TS	POPTR_0017s03410	POPTR_0017s03410 (10)	scaffold_17:2496824-2497333(-) (10)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	AC235677_11.1	Kunitz inhibitor ST1-like AC235677.1 41055-40367 E EGN_Mt090430 200	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.3874.2.S1_at	A	A1MS	POPTR_0014s08180	POPTR_0014s08180 (9)	scaffold_14:6071430-6071598(-) (9)	NA	NA	NA	AT4G00355.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G45980.1); Has 100 Blast hits to 97 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os02g57600.2	expressed protein	Medtr7g087540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3875.1.S1_s_at	A	A1MS	POPTR_0005s07840	POPTR_0005s07840 (11)	scaffold_5:5384443-5385293(+) (11)	NA	Q5SUC9	"Protein SCO1 homolog, mitochondrial"	AT4G39740.1	Thioredoxin superfamily protein 	LOC_Os09g20430.1	"SCO1 protein homolog, mitochondrial precursor, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3876.1.S1_s_at	A	A1TS	POPTR_0001s28740	POPTR_0001s28740 (11)	scaffold_1:27507560-27508691(+) (11)	NA	P0C895	LRR repeats and ubiquitin-like domain-containing protein At2g30105	AT2G30105.1	"CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G07910.1). "	LOC_Os10g31790.1	"ubiquitin family protein, putative, expressed"	Medtr5g024730.1	"Leucine-rich repeat, typical subtype "	NA	GO:0005515|protein binding	NA
Ptp.3877.1.S1_at	A	A1TS	POPTR_0014s03220	POPTR_0014s03220 (10)	scaffold_14:2567364-2567397(+) (10)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.3877.1.S1_s_at	A	A1TS	POPTR_0014s03220	POPTR_0014s03220 (11)	scaffold_14:2566876-2567420(+) (11)	NA	Q9MAA7	Probable gibberellin receptor GID1L1	AT1G47480.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os09g28750.1	"gibberellin receptor GID1L2, putative, expressed"	Medtr4g129310.1	Lipolytic enzyme 	GO:0008152|metabolic process	GO:0016787|hydrolase activity	NA
Ptp.3879.1.S1_at	A	A1TS	POPTR_0008s09660	POPTR_0008s09660 (11)	scaffold_8:5968698-5968917(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os12g31780.2	"nitrilase-associated protein, putative, expressed"	Medtr5g048000.1	"Nitrilase-associated protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3880.1.S1_at	A	A1TS	POPTR_0005s01900	POPTR_0005s01900 (9)	scaffold_5:1246654-1247068(+) (9)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g15010.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3881.1.S1_a_at	A	A3TS	POPTR_0004s10690	POPTR_0004s10750 (10)//POPTR_0004s10770 (10)//POPTR_0004s10690 (10)	scaffold_4:9226131-9226173(+) (10)//scaffold_4:9281046-9281088(+) (10)//scaffold_4:9301021-9301063(+) (10)//scaffold_4:9316667-9316709(+) (10)	NA	NA	NA	AT5G38760.1	Late embryogenesis abundant protein (LEA) family protein 	NA	NA	Medtr2g074350.1	"pollen coat-like protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3882.1.S1_at	A	A1TS	POPTR_0001s15180	POPTR_0001s15180 (11)	scaffold_1:12028741-12029816(-) (11)	NA	Q9LD45	Bax inhibitor 1	AT5G47120.1	BAX inhibitor 1 	LOC_Os02g03280.2	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr5g013460.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3883.1.S1_s_at	A	A1TS	POPTR_0018s07410	POPTR_0018s07410 (11)	scaffold_18:7718764-7718804(+) (11)	NA	O65282	"20 kDa chaperonin, chloroplastic"	AT5G20720.3	chaperonin 20 	LOC_Os09g26730.1	"chaperonin, putative, expressed"	Medtr8g132830.1	GroES-like 	GO:0006457|protein folding||GO:0044260|cellular macromolecule metabolic process	GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.3885.1.S1_s_at	A	A1TS	POPTR_0001s02260	POPTR_0001s02260 (11)	scaffold_1:1721604-1721693(+) (11)	NA	Q8L586	Uncharacterized membrane protein At4g09580	AT4G17790.1	SNARE associated Golgi protein family 	LOC_Os02g46660.1	"SNARE associated Golgi protein, putative, expressed"	Medtr5g029770.1	SNARE associated Golgi protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3889.1.S1_s_at	A	A1TS	POPTR_0013s15500	POPTR_0013s15500 (11)	scaffold_13:15448653-15449090(-) (11)	NA	Q682S0	Root phototropism protein 2	AT2G30520.1	Phototropic-responsive NPH3 family protein 	LOC_Os11g02610.1	"BTBN20 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed"	Medtr3g083710.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.389.1.A1_s_at	A	A1TS	POPTR_0007s06010	POPTR_0007s06010 (10)	scaffold_7:4149551-4149586(-) (10)	NA	Q9SNC6	U-box domain-containing protein 13	AT2G22125.1	binding 	LOC_Os06g11990.1	expressed protein	Medtr4g140500.1	C2 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3890.1.S1_at	A	A1TS	POPTR_0008s02860	POPTR_0008s02860 (10)	scaffold_8:1458633-1459503(-) (10)	NA	Q07469	Bark storage protein A	AT4G24350.1	Phosphorylase superfamily protein 	LOC_Os06g02210.1	"bark storage protein A precursor, putative, expressed"	AC233783_17.1	"Purine and other phosphorylases, family 1 AC233783.1 75384-71893 E EGN_Mt090430 200"	GO:0009116|nucleoside metabolic process||GO:0044281|small molecule metabolic process	GO:0003824|catalytic activity	NA
Ptp.3891.1.S1_s_at	A	A1TS	POPTR_0008s20860	POPTR_0008s20860 (10)	scaffold_8:14861494-14861931(+) (10)	NA	NA	NA	AT3G06070.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19190.1); Has 33 Blast hits to 33 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr8g146290.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3892.1.S1_at	A	A1TS	POPTR_0010s13360	POPTR_0010s13360 (9)	scaffold_10:13197025-13197534(-) (9)	NA	NA	NA	AT1G68450.1	VQ motif-containing protein 	LOC_Os08g01260.1	"VQ domain containing protein, putative"	Medtr1g140810.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3894.1.S1_s_at	A	A2TS	POPTR_0001s24250	POPTR_0001s24250 (10)//POPTR_1833s00200 (9)	scaffold_1:23601484-23601917(+) (10)//scaffold_1833:84-515(+) (11)	NA	NA	NA	AT2G37430.1	C2H2 and C2HC zinc fingers superfamily protein 	LOC_Os05g02390.1	"ZOS5-02 - C2H2 zinc finger protein, expressed"	Medtr7g024970.1	"Zinc finger, C2H2-type "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.3899.1.S1_s_at	A	A1TS	POPTR_0001s01460	POPTR_0001s01460 (11)	scaffold_1:1091779-1092291(+) (11)	NA	P42735	Cadmium-induced protein AS8	AT4G19070.1	Putative membrane lipoprotein 	LOC_Os07g05040.1	"cadmium-induced protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.39.1.A1_a_at	A	A2TS	POPTR_0017s13830	POPTR_0017s13830 (11)//POPTR_0571s00200 (10)	scaffold_17:14048896-14051866(-) (11)//scaffold_571:1506-4419(+) (11)	NA	NA	NA	AT5G16060.1	Cytochrome c oxidase biogenesis protein Cmc1-like 	LOC_Os03g15240.1	hypothetical protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.390.2.A1_s_at	A	A1MS	POPTR_0002s20660	POPTR_0002s20660 (11)	scaffold_2:16737966-16738367(+) (11)	NA	Q8LEA8	Phytochrome A-associated F-box protein	AT4G02440.1	F-box family protein 	LOC_Os05g30190.1	"phytochrome A-associated F-box protein, putative, expressed"	Medtr8g068260.1	"Phytochrome A-associated F-box protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3902.1.S1_at	A	A1TS	POPTR_0005s13830	POPTR_0005s13830 (11)	scaffold_5:10838590-10838920(-) (11)	NA	Q41495	STS14 protein	AT5G66590.1	"CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein "	LOC_Os07g03710.1	"SCP-like extracellular protein, expressed"	AC233653_7.1	"STS14 protein precursor, putative AC233653.2 29577-30147 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3903.1.S1_at	A	A1TS	POPTR_0003s10420	POPTR_0003s10420 (11)	scaffold_3:11411201-11411513(-) (11)	NA	P31133	Putrescine-binding periplasmic protein	AT1G31410.1	putrescine-binding periplasmic protein-related 	LOC_Os04g51310.1	"putrescine-binding periplasmic protein-related, putative, expressed"	Medtr8g086300.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3905.1.S1_s_at	A	A1TS	POPTR_0007s14250	POPTR_0007s14250 (11)	scaffold_7:14089267-14089847(-) (11)	NA	Q9T074	Phosphoenolpyruvate carboxykinase [ATP]	AT4G37870.1	phosphoenolpyruvate carboxykinase 1 	LOC_Os03g15050.2	"phosphoenolpyruvate carboxykinase, putative, expressed"	Medtr5g032160.1	Phosphoenolpyruvate carboxykinase (ATP); 	GO:0044283|small molecule biosynthetic process||GO:0006094|gluconeogenesis||GO:0044281|small molecule metabolic process	GO:0004612|phosphoenolpyruvate carboxykinase (ATP) activity||GO:0005524|ATP binding	NA
Ptp.3911.1.S1_s_at	A	A1TS	POPTR_0014s16250	POPTR_0014s16250 (11)	scaffold_14:12331116-12331929(-) (11)	NA	Q94CD8	"Glucan endo-1,3-beta-glucosidase 4"	AT5G35740.1	Carbohydrate-binding X8 domain superfamily protein 	LOC_Os03g12140.1	"glucan endo-1,3-beta-glucosidase precursor, putative, expressed"	Medtr5g105130.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3912.1.S1_a_at	A	A1TS	POPTR_0003s11950	POPTR_0003s11950 (11)	scaffold_3:12658961-12659294(-) (11)	NA	NA	NA	AT4G22920.1	non-yellowing 1 	LOC_Os09g36200.1	"senescence-inducible chloroplast stay-green protein 1, putative, expressed"	Medtr5g011250.1	"senescence-inducible chloroplast stay-green protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3914.1.S1_at	A	A1TS	POPTR_0002s23690	POPTR_0002s23690 (11)	scaffold_2:21230992-21231534(+) (11)	NA	Q8L5T9	Cysteine proteinase inhibitor 2	AT2G31980.1	PHYTOCYSTATIN 2 	LOC_Os04g28250.1	"cysteine proteinase inhibitor precursor, putative, expressed"	Medtr3g104370.1	"Proteinase inhibitor I25, cystatin "	NA	GO:0004869|cysteine-type endopeptidase inhibitor activity	NA
Ptp.3915.2.S1_a_at	A	A1TS	POPTR_0006s12360	POPTR_0006s12360 (11)	scaffold_6:9523238-9524163(+) (11)	NA	Q9CR50	RING finger and CHY zinc finger domain-containing protein 1	AT5G22920.1	CHY-type/CTCHY-type/RING-type Zinc finger protein 	LOC_Os03g05270.2	"RING finger and CHY zinc finger domain-containing protein 1, putative, expressed"	Medtr4g076230.1	"Zinc finger, RING-type; Zinc finger, CHY-type "	NA	GO:0008270|zinc ion binding	NA
Ptp.3918.1.S1_at	A	A1TS	POPTR_0015s10530	POPTR_0015s10530 (11)	scaffold_15:11423049-11424829(-) (11)	NA	Q8HSW1	"Adenylate kinase, chloroplastic"	AT3G01820.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os08g02540.1	"adenylate kinase, putative, expressed"	Medtr7g120720.1	"Adenylate/cytidine kinase, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3920.1.S1_at	A	A2TS	POPTR_0016s02370	POPTR_0016s02370 (10)//POPTR_0016s02350 (9)	scaffold_16:1160090-1160494(+) (10)//scaffold_16:1172561-1172968(+) (10)	NA	P32110	Probable glutathione S-transferase	AT2G29420.1	glutathione S-transferase tau 7 	LOC_Os09g29200.1	"glutathione S-transferase, putative, expressed"	Medtr7g071180.1	"Glutathione S-transferase, C-terminal; Thioredoxin fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3920.2.S1_s_at	A	A1TS	POPTR_0004s17520	POPTR_0004s17520 (11)	scaffold_4:17690700-17690946(-) (11)	NA	NA	NA	AT4G32090.1	"Beta-1,3-N-Acetylglucosaminyltransferase family protein "	LOC_Os02g30780.1	"LGC1, putative, expressed"	Medtr2g080840.1	"Glycosyl transferase, family 31 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3921.1.S1_s_at	A	A1TS	POPTR_0017s00870	POPTR_0017s00870 (10)	scaffold_17:649629-651706(-) (10)	NA	Q2KIK0	Suppressor of G2 allele of SKP1 homolog	AT4G11260.1	phosphatase-related 	LOC_Os01g43540.1	"suppressor of G2 allele of SKP1, putative, expressed"	Medtr5g010020.1	CS; SGS; Tetratricopeptide-like helical 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3924.1.S1_s_at	A	A1TS	POPTR_0005s14430	POPTR_0005s14430 (11)	scaffold_5:11468476-11468526(+) (11)	NA	Q9C8Y1	Probable calcium-binding protein CML23	AT1G66400.1	calmodulin like 23 	LOC_Os05g13580.1	"OsCML18 - Calmodulin-related calcium sensor protein, expressed"	Medtr5g086860.1	"Calcium-binding protein, S-100/ICaBP type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3925.1.S1_at	A	A1TS	POPTR_0005s24610	POPTR_0005s24610 (9)	scaffold_5:23092729-23093096(-) (9)	NA	P09802	Legumin A	AT5G44120.3	RmlC-like cupins superfamily protein 	LOC_Os01g55690.1	"glutelin, putative, expressed"	Medtr1g086770.1	11-S plant seed storage protein 	NA	GO:0045735|nutrient reservoir activity	NA
Ptp.3928.1.A1_at	A	A1TS	POPTR_0013s03000	POPTR_0013s03000 (9)	scaffold_13:1820602-1821388(+) (11)	NA	NA	NA	AT5G27290.1	unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g28540.1	"stress regulated protein, putative, expressed"	Medtr7g139860.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.393.2.S1_at	A	A1TS	POPTR_0018s03560	POPTR_0018s03560 (11)	scaffold_18:3086484-3086742(-) (11)	NA	Q9SV21	Coatomer subunit beta-1	AT4G31480.2	"Coatomer, beta subunit "	LOC_Os11g07280.1	"coatomer subunit beta-1, putative, expressed"	Medtr7g138720.1	"Adaptin, N-terminal "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030126|COPI vesicle coat
Ptp.3930.1.S1_s_at	A	A1TS	POPTR_0015s04970	POPTR_0015s04970 (11)	scaffold_15:5194587-5195364(-) (11)	NA	Q9LE73	Nudix hydrolase 4	AT1G18300.1	nudix hydrolase homolog 4 	LOC_Os02g50130.1	"hydrolase, NUDIX family, domain containing protein, expressed"	Medtr6g080940.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.3931.1.A1_a_at	A	A1TS	POPTR_0015s03420	POPTR_0015s03420 (11)	scaffold_15:2949853-2950756(-) (11)	NA	Q3U1Y4	DENN domain-containing protein 4B	AT1G49040.1	stomatal cytokinesis defective / SCD1 protein (SCD1) 	LOC_Os01g39380.1	"SCD1, putative, expressed"	AC148471_18.1	"Quinoprotein amine dehydrogenase, beta chain-like AC148471.15 33746-31612 H EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3932.1.S1_at	A	A1TS	POPTR_0007s04840	POPTR_0007s04840 (10)	scaffold_7:3025027-3025639(-) (10)	NA	P43273	Transcription factor TGA2	AT3G14880.2	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g06560.1	"transcription factor HBP-1b, putative, expressed"	Medtr4g143910.1	"tumor-related protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3934.1.S1_at	A	A1TS	POPTR_0010s12610	POPTR_0010s12610 (10)	scaffold_10:12601241-12602108(+) (10)	NA	Q7ZWL6	Repressor of RNA polymerase III transcription MAF1 homolog	AT5G13240.1	transcription regulators 	LOC_Os04g56730.3	"repressor of RNA polymerase III transcription MAF1, putative, expressed"	Medtr1g137700.1	"Repressor of RNA polymerase III transcription MAF1 homolog, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3935.1.A1_at	A	A1TS	POPTR_0001s29340	POPTR_0001s29340 (10)	scaffold_1:28062169-28063481(+) (10)	NA	A2CER7	Protein spinster homolog 3	AT5G64500.1	Major facilitator superfamily protein 	LOC_Os04g44430.1	"transporter, major facilitator family, putative, expressed"	Medtr4g121900.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3935.2.S1_a_at	A	A1TS	POPTR_0001s29340	POPTR_0001s29340 (11)	scaffold_1:28054645-28056069(+) (11)	NA	A2CER7	Protein spinster homolog 3	AT5G64500.1	Major facilitator superfamily protein 	LOC_Os04g44430.1	"transporter, major facilitator family, putative, expressed"	Medtr4g121900.1	Major facilitator superfamily MFS_1 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3937.1.S1_s_at	A	A1TS	POPTR_0014s13660	POPTR_0014s13660 (11)	scaffold_14:10015327-10015366(-) (11)	NA	P12858	"Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic"	AT3G26650.1	glyceraldehyde 3-phosphate dehydrogenase A subunit 	LOC_Os04g38600.2	"glyceraldehyde-3-phosphate dehydrogenase, putative, expressed"	Medtr7g099600.1	"Glyceraldehyde-3-phosphate dehydrogenase, type I "	GO:0044281|small molecule metabolic process||GO:0044262|cellular carbohydrate metabolic process||GO:0055114|oxidation reduction||GO:0006006|glucose metabolic process	GO:0051287|NAD or NADH binding||GO:0004365|glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity	NA
Ptp.3940.1.S1_at	A	A1TS	POPTR_0013s02480	POPTR_0013s02480 (10)	scaffold_13:1470090-1470638(+) (10)	NA	Q9FZ42	Glucose and ribitol dehydrogenase homolog 1	AT1G54870.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os05g04870.1	"oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed"	Medtr1g099380.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.3941.1.S1_at	A	A1TS	POPTR_0001s33710	POPTR_0001s33710 (11)	scaffold_1:31891212-31891655(-) (11)	NA	Q9FLN4	"50S ribosomal protein L27, chloroplastic"	AT5G40950.1	ribosomal protein large subunit 27 	LOC_Os01g69950.1	"ribosomal protein L27, putative, expressed"	Medtr3g021590.1	Ribosomal protein L27 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3942.1.S1_a_at	A	A1TS	POPTR_0001s47490	POPTR_0001s47490 (11)	scaffold_1:47663208-47663929(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3942.3.S1_at	A	A1MS	POPTR_0001s47490	POPTR_0001s47490 (11)	scaffold_1:47663934-47664182(+) (11)	NA	Q9FKT4	KH domain-containing protein At5g56140	AT5G56140.1	RNA-binding KH domain-containing protein 	LOC_Os02g49080.1	"KH domain containing protein, putative, expressed"	Medtr3g016780.1	KH 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3943.1.S1_at	A	A1TS	POPTR_0002s25880	POPTR_0002s25880 (11)	scaffold_2:22893449-22894116(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.3943.1.S1_s_at	A	A1TS	POPTR_0002s25880	POPTR_0002s25880 (11)	scaffold_2:22893193-22893362(-) (11)	NA	O94260	Putative G3BP-like protein	AT5G43960.1	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain 	LOC_Os02g03890.1	"nuclear transport factor 2, putative, expressed"	Medtr7g116890.1	"Nuclear transport factor 2; Nucleotide-binding, alpha-beta plait "	GO:0006810|transport	GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.3944.1.S1_at	A	A1TS	POPTR_0015s12060	POPTR_0015s12060 (11)	scaffold_15:12474930-12475516(+) (11)	NA	NA	NA	AT5G07330.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	LOC_Os11g32890.1	expressed protein	Medtr5g006680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3945.1.S1_s_at	A	A1TS	POPTR_0014s11540	POPTR_0014s11540 (11)	scaffold_14:8560756-8561131(-) (11)	NA	NA	NA	AT2G16760.1	Calcium-dependent phosphotriesterase superfamily protein 	LOC_Os03g19452.1	"SMP-30/Gluconolaconase/LRE domain protein, putative, expressed"	Medtr1g106660.1	"TolB, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3947.1.S1_s_at	A	A1TS	POPTR_0006s05750	POPTR_0006s05750 (11)	scaffold_6:4042116-4042611(-) (11)	NA	Q05091	Polygalacturonase inhibitor	AT5G06860.1	polygalacturonase inhibiting protein 1 	LOC_Os05g01444.1	"polygalacturonase inhibitor precursor, putative, expressed"	Medtr7g111410.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.3950.1.S1_at	A	A1TS	POPTR_0018s10890	POPTR_0018s10890 (11)	scaffold_18:11753701-11756102(-) (11)	NA	O94581	Cytochrome c oxidase subunit 6B	AT1G22450.1	cytochrome C oxidase 6B 	LOC_Os07g42910.1	"cytochrome c oxidase subunit, putative, expressed"	Medtr5g073800.1	"Cytochrome oxidase c, subunit VIb "	NA	GO:0004129|cytochrome-c oxidase activity	GO:0005739|mitochondrion
Ptp.3951.1.S1_at	A	A1TS	POPTR_0010s09920	POPTR_0010s09920 (10)	scaffold_10:10516260-10516849(-) (10)	NA	P49252	Primary amine oxidase (Fragment)	AT1G31690.1	Copper amine oxidase family protein 	LOC_Os06g23114.1	"copper methylamine oxidase precursor, putative, expressed"	Medtr1g132560.1	Copper amine oxidase; ; ; ; 	GO:0009308|amine metabolic process||GO:0055114|oxidation reduction	GO:0008131|amine oxidase activity||GO:0048038|quinone binding||GO:0005507|copper ion binding	NA
Ptp.3953.1.S1_s_at	A	A1TS	POPTR_0003s12380	POPTR_0003s12380 (11)	scaffold_3:12970710-12972257(-) (11)	NA	Q43070	UDP-glucose 4-epimerase	AT1G12780.1	UDP-D-glucose/UDP-D-galactose 4-epimerase 1 	LOC_Os09g35800.1	"UDP-glucose 4-epimerase, putative, expressed"	Medtr5g009210.1	UDP-glucose 4-epimerase 	GO:0044237|cellular metabolic process	GO:0050662|coenzyme binding||GO:0003824|catalytic activity	NA
Ptp.3954.1.S1_a_at	A	A1TS	POPTR_0019s05940	POPTR_0019s05940 (11)	scaffold_19:6355808-6355847(+) (11)	NA	NA	NA	AT1G64980.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os07g23120.1	expressed protein	Medtr5g007200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3954.1.S1_s_at	A	A1TS	POPTR_0011s11830	POPTR_0011s11830 (11)	scaffold_11:14624927-14625054(-) (11)	NA	NA	NA	AT1G64980.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os07g23120.1	expressed protein	Medtr5g007200.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3957.1.S1_a_at	A	A1TS	POPTR_0010s18850	POPTR_0010s18850 (11)	scaffold_10:16973477-16974185(-) (11)	NA	O22860	60S ribosomal protein L38	AT3G59540.1	Ribosomal L38e protein family 	LOC_Os11g24610.2	"60S ribosomal protein L38, putative, expressed"	Medtr4g092560.1	Ribosomal L38e protein 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3958.1.A1_s_at	A	A1TS	POPTR_0007s10380	POPTR_0007s10380 (11)	scaffold_7:10301145-10301558(-) (11)	NA	Q8BHJ5	F-box-like/WD repeat-containing protein TBL1XR1	AT5G67320.1	WD-40 repeat family protein 	LOC_Os07g22220.1	"F-box-like/WD repeat-containing protein TBL1XR1-A, putative, expressed"	Medtr5g016370.1	Lissencephaly type-1-like homology motif; WD40-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3959.1.S1_at	A	A1TS	POPTR_0017s01150	POPTR_0017s01150 (10)	scaffold_17:830201-830243(+) (10)	NA	Q9SW09	40S ribosomal protein S10-1	AT4G25740.1	RNA binding Plectin/S10 domain-containing protein 	LOC_Os04g35090.1	"40S ribosomal protein S10, putative, expressed"	Medtr5g010110.2	"Plectin/S10, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.396.1.A1_at	A	A1TS	POPTR_0001s31400	POPTR_0001s31400 (11)	scaffold_1:29727658-29728144(-) (11)	NA	Q9BRX9	WD repeat domain-containing protein 83	AT5G64730.1	Transducin/WD40 repeat-like superfamily protein 	LOC_Os02g33860.1	"WD domain, G-beta repeat domain containing protein, expressed"	Medtr4g141700.1	WD40-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3962.1.A1_s_at	A	A1TS	POPTR_0003s08220	POPTR_0003s08220 (11)	scaffold_3:9631502-9631615(-) (11)	NA	NA	NA	AT4G17070.1	peptidyl-prolyl cis-trans isomerases 	LOC_Os03g01090.1	"peptidyl-prolyl cis-trans isomerase, cyclophilin type, putative, expressed"	Medtr5g013700.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.3963.1.S1_at	A	A1TS	POPTR_0005s01890	POPTR_0005s01890 (9)	scaffold_5:1243142-1243199(+) (9)	NA	O04834	GTP-binding protein SAR1A	AT4G02080.1	secretion-associated RAS super family 2 	LOC_Os01g15010.1	"miro, putative, expressed"	Medtr2g038780.1	Small GTP-binding protein domain 	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.3966.1.S1_at	A	A1TS	POPTR_0004s17120	POPTR_0004s17120 (11)	scaffold_4:17457941-17459433(-) (11)	NA	O65693	"Probable ribosome-binding factor A, chloroplastic"	AT4G34730.1	ribosome-binding factor A family protein 	LOC_Os06g04610.1	"ribosome-binding factor A, chloroplast precursor, putative, expressed"	Medtr3g163130.1	Ribosome-binding factor A 	GO:0044260|cellular macromolecule metabolic process||GO:0006364|rRNA processing	NA	NA
Ptp.3967.1.S1_at	A	A1TS	POPTR_0017s12230	POPTR_0017s12230 (11)	scaffold_17:12434918-12435254(+) (11)	NA	Q8GWP0	Transcription factor MYB39	AT5G15310.1	myb domain protein 16 	LOC_Os08g33660.1	"MYB family transcription factor, putative, expressed"	Medtr6g013190.1	Homeodomain-like; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3969.1.S1_s_at	A	A1TS	POPTR_0009s14340	POPTR_0009s14340 (11)	scaffold_9:11244954-11245532(+) (11)	NA	B9HQZ6	"Probable alanyl-tRNA synthetase, chloroplastic"	AT5G22800.1	"Alanyl-tRNA synthetase, class IIc "	LOC_Os06g13660.1	"alanyl-tRNA synthetase, putative, expressed"	Medtr3g163940.1	"Alanyl-tRNA synthetase, class IIc "	GO:0034645|cellular macromolecule biosynthetic process||GO:0034641|cellular nitrogen compound metabolic process||GO:0006419|alanyl-tRNA aminoacylation||GO:0044281|small molecule metabolic process	GO:0003676|nucleic acid binding||GO:0004813|alanine-tRNA ligase activity||GO:0005524|ATP binding	GO:0005737|cytoplasm
Ptp.397.2.S1_s_at	A	A1TS	POPTR_0010s02830	POPTR_0010s02830 (11)	scaffold_10:3332105-3332581(+) (11)	NA	NA	NA	AT4G02040.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30 Blast hits to 30 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	NA	NA	Medtr2g025920.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3970.1.A1_a_at	A	A1TS	POPTR_0004s23690	POPTR_0004s23690 (11)	scaffold_4:22330672-22330924(+) (11)	NA	Q9LQ55	Dynamin-2B	AT1G59610.1	dynamin-like 3 	LOC_Os02g50550.1	"dynamin, putative, expressed"	Medtr4g031780.1	Dynamin central region; Dynamin; Dynamin GTPase effector; Pleckstrin homology-type 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.3973.1.S1_x_at	A	A1TS	POPTR_0004s05590	POPTR_0004s05590 (11)	scaffold_4:4324655-4326407(+) (11)	NA	O80929	60S ribosomal protein L36-1	AT2G37600.2	Ribosomal protein L36e family protein 	LOC_Os05g38520.4	"60S ribosomal protein L36-2, putative, expressed"	Medtr1g126960.2	Ribosomal protein L36E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.3974.1.S1_at	A	A1MS	POPTR_0006s06130	POPTR_0006s06130 (9)	scaffold_6:4356740-4356776(+) (9)	NA	Q39224	Protein SRG1	AT5G20400.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g08023.1	"flavonol synthase/flavanone 3-hydroxylase, putative"	Medtr3g163000.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.3978.1.S1_at	A	A1TS	POPTR_0006s13190	POPTR_0006s13190 (9)	scaffold_6:10437011-10437223(+) (9)	NA	Q42580	Peroxidase 21	AT2G37130.1	Peroxidase superfamily protein 	LOC_Os07g49360.1	"peroxidase precursor, putative, expressed"	Medtr1g078990.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.398.1.S1_s_at	A	A1TS	POPTR_0014s08800	POPTR_0014s08800 (11)	scaffold_14:6514706-6515010(+) (11)	NA	Q8S8M5	Protein ABIL1	AT2G46225.1	ABI-1-like 1 	LOC_Os01g43420.1	expressed protein	Medtr7g143400.1	"Protein ABIL2, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3980.1.S1_at	A	A1TS	POPTR_0006s04540	POPTR_0006s04540 (11)	scaffold_6:3090806-3092243(-) (11)	NA	NA	NA	AT3G57320.1	unknown protein; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os07g46710.3	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3982.1.S1_s_at	A	A1TS	POPTR_0012s14010	POPTR_0012s14010 (11)	scaffold_12:13990581-13992112(-) (11)	NA	O82616	Putative fructokinase-5	AT5G51830.1	pfkB-like carbohydrate kinase family protein 	LOC_Os06g12600.1	"kinase, pfkB family, putative, expressed"	Medtr6g096500.1	"Carbohydrate kinase, PfkB "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3984.1.A1_at	A	A1TS	POPTR_0006s12160	POPTR_0006s12160 (11)	scaffold_6:9319536-9320498(+) (11)	NA	Q8W013	Caffeic acid 3-O-methyltransferase	AT3G53140.1	O-methyltransferase family protein 	LOC_Os02g57760.1	"O-methyltransferase, putative, expressed"	Medtr3g143560.2	"O-methyltransferase, family 2; Winged helix repressor DNA-binding "	NA	GO:0008171|O-methyltransferase activity||GO:0046983|protein dimerization activity	NA
Ptp.3985.1.S1_at	A	A1TS	POPTR_0015s04310	POPTR_0015s04310 (11)	scaffold_15:4382444-4384537(+) (11)	NA	Q9XFK7	Protein MOTHER of FT and TF 1	AT1G18100.1	PEBP (phosphatidylethanolamine-binding protein) family protein 	LOC_Os06g30370.1	"osMFT1  MFT-Like1 homologous to Mother of FT and TFL1  gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed"	Medtr4g155400.1	Phosphatidylethanolamine-binding protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3987.1.S1_at	A	A1TS	POPTR_0008s15690	POPTR_0008s15690 (10)	scaffold_8:10460700-10461290(-) (10)	NA	Q94A20	BI1-like protein	AT3G63310.1	Bax inhibitor-1 family protein 	LOC_Os03g53400.1	"transmembrane BAX inhibitor motif-containing protein, putative, expressed"	Medtr1g083870.1	Protein of unknown function UPF0005 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3988.1.S1_s_at	A	A1TS	POPTR_0002s22670	POPTR_0002s22670 (11)	scaffold_2:19493736-19496392(+) (11)	POPTR_0014s13940 (6)	Q05609	Serine/threonine-protein kinase CTR1	AT3G58640.2	Mitogen activated protein kinase kinase kinase-related 	LOC_Os01g48330.1	"protein kinase domain containing protein, expressed"	Medtr4g109800.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.3989.1.S1_at	A	A1TS	POPTR_0004s24240	POPTR_0004s24240 (11)	scaffold_4:22952113-22952347(-) (11)	NA	NA	NA	AT5G45310.1	"unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: stem, inflorescence meristem, root, leaf; EXPRESSED DURING: LP.04 four leaves visible; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g73110.1	expressed protein	Medtr5g025850.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3990.1.S1_s_at	A	A2TS	POPTR_0003s18370	POPTR_0003s18420 (11)//POPTR_0003s18370 (11)	scaffold_3:17472970-17474490(+) (11)//scaffold_3:17506383-17507903(+) (11)	NA	NA	NA	AT1G16080.1	"unknown protein; LOCATED IN: apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 81 Blast hits to 81 proteins in 28 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). "	LOC_Os08g16570.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3991.1.S1_s_at	A	A1TS	POPTR_0008s20660	POPTR_0008s20660 (11)	scaffold_8:14563800-14565724(+) (11)	NA	Q9C0Y8	UPF0613 protein PB24D3.06c	AT5G19050.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os07g11060.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.3992.1.S1_at	A	A1TS	POPTR_0005s20710	POPTR_0005s20710 (9)	scaffold_5:19827639-19827999(-) (9)	NA	Q68FJ8	TOM1-like protein 2	AT1G21380.1	Target of Myb protein 1 	LOC_Os11g09329.1	"VHS and GAT domain containing protein, expressed"	AC225507_18.1	GAT; ENTH/VHS AC225507.11 78391-85926 E EGN_Mt090430 200	GO:0006886|intracellular protein transport	NA	GO:0005622|intracellular
Ptp.3996.1.S1_s_at	A	A1TS	POPTR_0008s11850	POPTR_0008s11850 (10)	scaffold_8:7591437-7591786(-) (10)	NA	NA	NA	AT1G13360.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G25870.1); Has 69 Blast hits to 69 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g04010.1	expressed protein	Medtr4g158300.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4.1.A1_a_at	A	A1TS	POPTR_0015s07110	POPTR_0015s07110 (11)	scaffold_15:8230795-8231038(-) (11)	NA	Q9LFW3	COBRA-like protein 4	AT5G15630.1	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family 	LOC_Os03g30250.1	"COBRA-like protein precursor, putative, expressed"	Medtr3g163210.1	Phytochelatin synthetase-like conserved region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.40.1.S1_at	A	A1TS	POPTR_0005s20270	POPTR_0005s20270 (11)	scaffold_5:19313768-19313908(-) (11)	NA	Q9XI05	Proteasome subunit beta type-3-A	AT1G21720.1	proteasome beta subunit C1 	LOC_Os02g08520.1	"peptidase, T1 family, putative, expressed"	Medtr7g105310.1	"Peptidase T1A, proteasome beta-subunit "	GO:0044265|cellular macromolecule catabolic process||GO:0051603|proteolysis involved in cellular protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.400.1.A1_a_at	A	A1TS	POPTR_0010s03980	POPTR_0010s03980 (11)	scaffold_10:4773920-4774060(+) (11)	NA	Q8WTR2	Dual specificity protein phosphatase 19	AT3G23610.2	dual specificity protein phosphatase 1 	LOC_Os01g29469.1	"dual specificity protein phosphatase, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.400.2.A1_at	A	A1TS	POPTR_0010s03980	POPTR_0010s03980 (10)	scaffold_10:4773139-4773812(+) (10)	NA	Q8WTR2	Dual specificity protein phosphatase 19	AT3G23610.2	dual specificity protein phosphatase 1 	LOC_Os01g29469.1	"dual specificity protein phosphatase, putative, expressed"	Medtr4g152140.1	Dual specificity protein phosphatase; Protein kinase-like 	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process	GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.4001.1.S1_at	A	A1TS	POPTR_0006s04440	POPTR_0006s04440 (11)	scaffold_6:3016155-3016686(-) (11)	NA	NA	NA	AT5G03990.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os01g58700.1	expressed protein	Medtr7g108030.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4002.1.S1_s_at	A	A1TS	POPTR_0002s05540	POPTR_0002s05540 (11)	scaffold_2:3619229-3619572(-) (11)	NA	NA	NA	AT5G19160.1	TRICHOME BIREFRINGENCE-LIKE 11 	LOC_Os11g05080.1	"powdery mildew resistant protein 5, putative, expressed"	Medtr7g133010.1	"Protein of unknown function DUF231, plant "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4007.1.A1_at	A	A1TS	POPTR_0014s16010	POPTR_0014s16010 (11)	scaffold_14:12088547-12089344(+) (11)	NA	Q94BT2	Auxin-induced in root cultures protein 12	AT5G47530.1	Auxin-responsive family protein 	LOC_Os03g09900.1	"membrane protein, putative, expressed"	Medtr8g148310.1	Protein of unknown function DUF568 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4009.1.S1_at	A	A1TS	POPTR_0003s07740	POPTR_0003s07740 (11)	scaffold_3:9248100-9250770(-) (11)	NA	A6BM06	1-aminocyclopropane-1-carboxylate oxidase	AT4G16770.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os10g37899.1	"transposon protein, putative, unclassified, expressed"	Medtr8g105360.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4009.2.A1_s_at	A	A1MS	POPTR_0005s05850	POPTR_0005s05850 (11)	scaffold_11:1187953-1187988(+) (11)//scaffold_11:1254835-1254870(-) (11)//scaffold_14:1081163-1081197(+) (10)//scaffold_5:3818547-3818582(+) (11)//scaffold_7:3878464-3878499(+) (11)//scaffold_750:5780-5815(+) (11)	NA	Q9XID3	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300	AT1G34300.1	lectin protein kinase family protein 	LOC_Os08g13420.1	"S-domain receptor-like protein kinase, putative"	Medtr8g120370.1	Tyrosine protein kinase; Curculin-like (mannose-binding) lectin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.401.1.S1_at	A	A1TS	POPTR_0002s24790	POPTR_0002s24790 (11)	scaffold_2:22053295-22053659(+) (11)	NA	Q9LSG3	Galacturonosyltransferase 8	AT3G25140.1	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os02g29530.1	"glycosyl transferase 8 domain containing protein, putative, expressed"	Medtr7g062010.1	"Glycosyl transferase, family 8 "	NA	"GO:0016757|""transferase activity, transferring glycosyl groups"""	NA
Ptp.4010.1.S1_at	A	A1TS	POPTR_0018s13990	POPTR_0018s13990 (11)	scaffold_18:14244291-14245784(+) (11)	NA	NA	NA	AT4G29960.1	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os04g51780.1	expressed protein	Medtr2g042660.3	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4014.1.S1_s_at	A	A1TS	POPTR_0008s06260	POPTR_0008s06260 (11)	scaffold_8:3708954-3709344(-) (11)	NA	P05478	18.5 kDa class I heat shock protein	AT1G53540.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067320.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4015.1.S1_at	A	A1TS	POPTR_0011s05400	POPTR_0011s05400 (11)	scaffold_11:5320660-5321257(+) (11)	NA	NA	NA	AT4G21020.1	Late embryogenesis abundant protein (LEA) family protein 	LOC_Os04g52110.1	"late embryogenesis abundant protein, group 3, putative, expressed"	Medtr2g017540.1	"late embryogenesis abundant protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4016.1.A1_at	A	A1TS	POPTR_0001s02370	POPTR_0001s02370 (11)	scaffold_1:1789772-1790906(-) (11)	NA	P19683	"31 kDa ribonucleoprotein, chloroplastic"	AT2G35410.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os04g50110.1	"RNA recognition motif containing protein, putative, expressed"	Medtr5g029900.1	"Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4021.1.S1_at	A	A1TS	POPTR_0008s07200	POPTR_0008s07200 (9)	scaffold_8:4377104-4377454(-) (9)	NA	NA	NA	AT5G05500.1	Pollen Ole e 1 allergen and extensin family protein 	LOC_Os01g07060.1	"POEI43 - Pollen Ole e I allergen and extensin family protein precursor, putative"	Medtr3g094630.1	Pollen Ole e 1 allergen and extensin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4022.1.S1_s_at	A	A1TS	POPTR_0015s08540	POPTR_0015s08540 (11)	scaffold_15:9830434-9830805(+) (11)	NA	Q9SU63	"Aldehyde dehydrogenase family 2 member B4, mitochondrial"	AT3G48000.1	aldehyde dehydrogenase 2B4 	LOC_Os06g15990.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g125510.1	"Aldehyde dehydrogenase 2B7, mitochondrial precursor, putative "	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4024.1.S1_a_at	A	A1TS	POPTR_0010s09140	POPTR_0010s09140 (11)	scaffold_10:9975517-9975560(-) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
Ptp.4024.1.S1_at	A	A1TS	POPTR_0010s09140	POPTR_0010s09140 (11)	scaffold_10:9975398-9976037(-) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
Ptp.4024.2.A1_at	A	A1TS	POPTR_0008s15880	POPTR_0008s15880 (11)	scaffold_8:10602447-10602481(+) (11)	NA	O95340	Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2	AT3G22890.1	ATP sulfurylase 1 	LOC_Os03g53230.1	"bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed"	AC146721_18.1	ATP-sulfurylase; AC146721.7 112689-108392 E EGN_Mt090430 200	GO:0006790|sulfur metabolic process||GO:0000103|sulfate assimilation	GO:0004781|sulfate adenylyltransferase (ATP) activity	NA
Ptp.4028.1.S1_at	A	A1TS	POPTR_0001s27100	POPTR_0001s27100 (9)	scaffold_1:26049060-26051355(+) (9)	NA	Q7L1T6	Cytochrome b5 reductase 4	AT5G09680.2	reduced lateral root formation 	LOC_Os07g12830.3	"cytochrome b5-like Heme/Steroid binding domain containing protein, expressed"	NA	NA	NA	GO:0020037|heme binding	NA
Ptp.4031.1.S1_s_at	A	A1TS	POPTR_0004s01770	POPTR_0004s01770 (11)	scaffold_4:1075048-1075331(+) (11)	NA	NA	NA	AT4G21790.1	tobamovirus multiplication 1 	LOC_Os03g36790.1	"tobamovirus multiplication protein, putative, expressed"	Medtr8g146580.1	Protein of unknown function DUF1084 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4033.1.S1_at	A	A1MS	POPTR_0006s20210	POPTR_0006s20210 (9)	scaffold_6:19258565-19258974(+) (9)	NA	NA	NA	AT2G24300.2	Calmodulin-binding protein 	LOC_Os02g08120.2	"calmodulin binding protein, putative, expressed"	Medtr8g128550.1	Calmodulin binding protein-like 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4034.1.S1_at	A	A1TS	POPTR_0001s24430	POPTR_0001s24430 (11)	scaffold_1:23706702-23707052(-) (11)	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	Medtr4g155060.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4034.2.S1_s_at	A	A1TS	POPTR_0009s03410	POPTR_0009s03410 (11)	scaffold_9:4039062-4039512(-) (11)	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	Medtr3g156500.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4034.2.S1_x_at	A	A1TS	POPTR_0009s03410	POPTR_0009s03410 (10)	scaffold_9:4039025-4039510(-) (10)	NA	Q41350	Osmotin-like protein	AT2G28790.1	Pathogenesis-related thaumatin superfamily protein 	LOC_Os01g62260.1	"thaumatin, putative, expressed"	Medtr3g156500.1	"Thaumatin, pathogenesis-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4036.1.S1_at	A	A1TS	POPTR_0001s06040	POPTR_0001s06040 (11)	scaffold_1:4718225-4719026(-) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os07g46670.3	"early response to dehydration 15, putative, expressed"	Medtr3g026140.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4039.1.S1_at	A	A1TS	POPTR_0002s17080	POPTR_0002s17080 (9)	scaffold_2:12859791-12859954(+) (9)	NA	NA	NA	AT3G61680.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os01g43140.1	"lipase, putative, expressed"	Medtr1g107310.1	"Lipase, class 3 "	GO:0006629|lipid metabolic process	GO:0004806|triglyceride lipase activity	NA
Ptp.4040.1.S1_s_at	A	A1TS	POPTR_0004s18030	POPTR_0004s18030 (11)	scaffold_4:18039508-18039577(-) (11)	NA	Q42564	"L-ascorbate peroxidase 3, peroxisomal"	AT4G35000.1	ascorbate peroxidase 3 	LOC_Os08g43560.1	"OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9, expressed"	Medtr4g098670.1	"Haem peroxidase, plant/fungal/bacterial "	GO:0006979|response to oxidative stress||GO:0055114|oxidation reduction	GO:0020037|heme binding||GO:0004601|peroxidase activity	NA
Ptp.4041.2.S1_s_at	A	A1TS	POPTR_0014s15280	POPTR_0014s15280 (11)	scaffold_14:11351723-11351979(-) (11)	NA	Q8H107	"Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial"	AT4G26910.2	Dihydrolipoamide succinyltransferase 	LOC_Os04g32330.1	"dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial precursor, putative, expressed"	Medtr2g006710.1	"Dihydrolipoamide acetyltransferase, long form "	GO:0008152|metabolic process	GO:0008415|acyltransferase activity	NA
Ptp.4043.1.A1_s_at	A	A1TS	POPTR_0006s11860	POPTR_0006s11860 (11)	scaffold_6:9054979-9056762(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.4044.1.S1_s_at	A	A1TS	POPTR_0003s10390	POPTR_0003s10390 (10)	scaffold_3:11388151-11388957(-) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr5g089630.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4046.1.S1_x_at	A	A1TS	POPTR_0012s03450	POPTR_0012s03450 (11)	scaffold_12:2732649-2733475(+) (11)	NA	Q9LUQ6	60S ribosomal protein L19-2	AT3G16780.1	Ribosomal protein L19e family protein 	LOC_Os03g38260.1	"60S ribosomal protein L19-3, putative, expressed"	Medtr1g107930.1	Ribosomal protein L19e; 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4047.1.S1_s_at	A	A1TS	POPTR_0001s05810	POPTR_0001s05810 (11)	scaffold_1:4548962-4549382(-) (11)	NA	NA	NA	AT5G13470.1	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4048.1.S1_s_at	A	A1TS	POPTR_0004s20740	POPTR_0004s20740 (11)	scaffold_4:20171374-20172457(+) (11)	NA	O49884	60S ribosomal protein L30	AT1G36240.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 	LOC_Os01g16890.1	"ribosomal protein L7Ae, putative, expressed"	Medtr7g020840.1	Ribosomal protein L30e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.405.1.A1_s_at	A	A1TS	POPTR_0002s03770	POPTR_0002s03770 (11)	scaffold_2:2344798-2345539(-) (11)	NA	Q681Q7	Uncharacterized protein At1g03900	AT1G03900.1	non-intrinsic ABC protein 4 	LOC_Os10g33630.2	"adaptin ear-binding coat-associated protein 2, putative, expressed"	NA	NA	GO:0006897|endocytosis||GO:0061024|membrane organization	NA	GO:0016020|membrane
Ptp.4050.10.A1_at	A	A1TA	POPTR_0019s09950	POPTR_0019s09950 (11)	scaffold_19:11582404-11582500(+) (11)	POPTR_0019s09920 (7)	Q93ZR6	O-acyltransferase WSD1	AT5G53390.1	O-acyltransferase (WSD1-like) family protein 	LOC_Os05g48260.1	"wax synthase, putative, expressed"	Medtr1g009270.1	Protein of unknown function UPF0089 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.11.A1_at	A	A1TA	POPTR_0010s24290	POPTR_0010s24290 (9)	scaffold_10:20578508-20579140(+) (9)	POPTR_0008s02430 (7)	NA	NA	AT1G66240.1	homolog of anti-oxidant 1 	LOC_Os08g10480.1	heavy metal-associated domain containing protein	Medtr1g117110.1	Heavy metal transport/detoxification protein 	GO:0030001|metal ion transport	GO:0046872|metal ion binding	NA
Ptp.4050.13.A1_x_at	A	A1MA	POPTR_0001s41080	POPTR_0001s41080 (9)	scaffold_1:40733721-40734046(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.17.A1_at	A	A1TA	POPTR_0001s41080	POPTR_0001s41080 (11)	scaffold_1:40733147-40733197(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.2.S1_x_at	A	A1TS	POPTR_0011s11960	POPTR_0011s11960 (10)	scaffold_11:14761222-14761559(+) (10)	NA	Q96386	Metallothionein-like protein type 3	AT3G15353.1	metallothionein 3 	LOC_Os05g11320.1	"metallothionein-like protein 3B, putative, expressed"	Medtr8g070820.1	"Plant metallothionein, family 15 "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4050.3.A1_at	A	A3TA	POPTR_0001s05330	POPTR_0328s00200 (11)//POPTR_0001s05330 (11)//POPTR_0017s07350 (11)	scaffold_1:4110574-4110683(+) (11)//scaffold_17:5708752-5708861(+) (11)//scaffold_328:6367-6476(-) (11)//scaffold_328:19167-19276(-) (11)	POPTR_0328s00210 (7)	Q8GSM2	"Lipoxygenase 2.3, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os02g10120.1	"lipoxygenase, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.4050.4.A1_at	A	A1TA	POPTR_0009s12710	POPTR_0009s12710 (11)	scaffold_9:10320918-10321007(-) (11)	POPTR_0004s16920 (6)	Q944G9	"Probable fructose-bisphosphate aldolase 2, chloroplastic"	AT4G38970.1	fructose-bisphosphate aldolase 2 	LOC_Os11g07020.1	"fructose-bisphospate aldolase isozyme, putative, expressed"	Medtr4g097300.1	"Fructose-bisphosphate aldolase, class-I "	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0004332|fructose-bisphosphate aldolase activity	NA
Ptp.4050.9.A1_at	A	A1TA	POPTR_0001s40250	POPTR_0001s40250 (11)	scaffold_1:39619261-39619506(-) (11)	POPTR_0011s11190 (8)	Q02909	"Phosphoenolpyruvate carboxylase, housekeeping isozyme"	AT3G14940.1	phosphoenolpyruvate carboxylase 3 	LOC_Os08g27840.1	"phosphoenolpyruvate carboxylase, putative, expressed"	Medtr2g092340.1	Phosphoenolpyruvate carboxylase 	GO:0006099|tricarboxylic acid cycle	GO:0008964|phosphoenolpyruvate carboxylase activity	NA
Ptp.4051.1.S1_at	A	A1TS	POPTR_0010s16420	POPTR_0010s16420 (11)	scaffold_10:15394709-15394937(-) (11)	NA	Q8RU27	"Alpha-1,4-glucan-protein synthase [UDP-forming] 2"	AT3G08900.1	reversibly glycosylated polypeptide 3 	LOC_Os03g40270.1	"alpha-1,4-glucan-protein synthase, putative, expressed"	Medtr5g048590.1	"Alpha-1,4-glucan-protein synthase (UDP-forming) "	GO:0030244|cellulose biosynthetic process||GO:0007047|cellular cell wall organization||GO:0034645|cellular macromolecule biosynthetic process||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization	"GO:0016758|""transferase activity, transferring hexosyl groups"""	GO:0030054|cell junction||GO:0005794|Golgi apparatus||GO:0009505|plant-type cell wall
Ptp.4053.1.A1_at	A	A1TS	POPTR_0015s06800	POPTR_0015s06800 (10)	scaffold_15:7844322-7845022(+) (10)	NA	P27694	Replication protein A 70 kDa DNA-binding subunit	AT5G08020.1	RPA70-kDa subunit B 	LOC_Os03g11540.1	"RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed"	Medtr5g027080.1	"Zinc finger, CCHC-type; Replication factor-a protein 1 Rpa1 "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006260|DNA replication	GO:0003677|DNA binding	GO:0005634|nucleus
Ptp.4054.1.S1_a_at	A	A1TS	POPTR_0015s14380	POPTR_0015s14380 (11)	scaffold_15:14003598-14003774(+) (11)	NA	Q42971	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.4054.1.S1_s_at	A	A1TS	POPTR_0015s14380	POPTR_0015s14380 (11)	scaffold_15:14004148-14004721(+) (11)	NA	Q42971	Enolase	AT2G36530.1	Enolase 	LOC_Os10g08550.1	"enolase, putative, expressed"	Medtr6g069700.1	Enolase 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0000287|magnesium ion binding||GO:0004634|phosphopyruvate hydratase activity	GO:0000015|phosphopyruvate hydratase complex
Ptp.4055.1.S1_a_at	A	A1TS	POPTR_0009s16460	POPTR_0009s16460 (11)	scaffold_9:12492611-12492716(-) (11)	NA	Q9ZUX4	"Uncharacterized protein At2g27730, mitochondrial"	AT2G27730.1	copper ion binding 	LOC_Os09g39550.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4058.1.A1_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (11)	scaffold_2:5545819-5545855(+) (11)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4058.1.A1_s_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (11)	scaffold_2:5545992-5546328(+) (11)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4058.2.S1_at	A	A1TS	POPTR_0016s13160	POPTR_0016s13160 (9)	scaffold_16:12414242-12414623(-) (9)	NA	O13864	Importin subunit beta-1	AT3G08947.1	ARM repeat superfamily protein 	LOC_Os05g28510.4	"importin subunit beta, putative, expressed"	NA	NA	GO:0006886|intracellular protein transport	GO:0008565|protein transporter activity	NA
Ptp.4058.3.S1_at	A	A1TS	POPTR_0002s08010	POPTR_0002s08010 (10)	scaffold_2:5544281-5544771(+) (10)	NA	Q28TS0	Protein tolB	AT1G21680.1	DPP6 N-terminal domain-like protein 	LOC_Os03g62370.1	"WD40-like Beta Propeller Repeat family protein, expressed"	Medtr4g145010.1	WD40-like Beta Propeller 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4059.1.S1_at	A	A1TS	POPTR_0018s06900	POPTR_0018s06900 (9)	scaffold_18:6988898-6989630(-) (9)	NA	O23969	Pollen-specific protein SF21	AT5G56750.1	N-MYC downregulated-like 1 	LOC_Os02g13150.1	"pollen-specific protein SF21, putative, expressed"	Medtr4g160760.1	Ndr 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4060.1.S1_s_at	A	A1TS	POPTR_0004s06630	POPTR_0004s06630 (11)	scaffold_4:5321054-5321431(-) (11)	NA	P13087	Miraculin	AT1G17860.1	Kunitz family trypsin and protease inhibitor protein 	LOC_Os04g44470.1	"KUN1 - Kunitz-type trypsin inhibitor precursor, expressed"	Medtr6g070510.1	Kunitz inhibitor ST1-like 	NA	GO:0004866|endopeptidase inhibitor activity	NA
Ptp.4061.1.S1_at	A	A1TS	POPTR_0007s00470	POPTR_0007s00470 (11)	scaffold_7:178959-179285(-) (11)	NA	Q8LAC4	Probable uridine nucleosidase 2	AT1G05620.1	uridine-ribohydrolase  2 	LOC_Os03g31170.1	"inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed"	Medtr1g047060.1	Inosine/uridine-preferring nucleoside hydrolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4062.1.A1_at	A	A1TS	POPTR_0017s07630	POPTR_0017s07630 (11)	scaffold_17:5936777-5936844(-) (11)	NA	D4N501	Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase	AT2G36690.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os08g37456.2	"flavonol synthase/flavanone 3-hydroxylase, putative, expressed"	Medtr4g120970.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4063.1.S1_at	A	A1TS	POPTR_0016s01720	POPTR_0016s01720 (11)	scaffold_16:778968-779054(-) (11)	NA	P14009	14 kDa proline-rich protein DC2.15	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g52250.1	"LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4063.2.S1_a_at	A	A1TS	POPTR_0016s01720	POPTR_0016s01720 (11)	scaffold_16:778665-778750(-) (11)//scaffold_16:778722-778807(-) (11)//scaffold_16:778779-778864(-) (11)//scaffold_16:778836-778921(-) (9)	NA	P14009	14 kDa proline-rich protein DC2.15	AT3G22142.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os04g52250.1	"LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr8g106090.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4064.2.S1_at	A	A1MS	POPTR_0008s20590	POPTR_0008s20590 (10)	scaffold_8:14349149-14349531(-) (10)	NA	Q9ZT66	"Endo-1,3;1,4-beta-D-glucanase"	AT3G23600.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os05g33100.1	"endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed"	Medtr2g026480.1	Dienelactone hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4066.1.S1_at	A	A1TS	POPTR_0001s16640	POPTR_0001s16640 (11)	scaffold_1:13418782-13418891(-) (11)	NA	Q9LMA8	Protein TIFY 10A	AT1G19180.1	jasmonate-zim-domain protein 1 	LOC_Os03g28940.1	"ZIM domain containing protein, putative, expressed"	Medtr2g049880.1	ZIM 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4067.1.S1_at	A	A1TS	POPTR_0019s05360	POPTR_0019s05360 (9)	scaffold_19:5709897-5710335(+) (9)	NA	NA	NA	AT1G54400.1	HSP20-like chaperones superfamily protein 	NA	NA	Medtr7g102860.1	Heat shock protein Hsp20 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4068.1.A1_a_at	A	A2TS	POPTR_0008s14130	POPTR_0010s11010 (11)//POPTR_0008s14130 (11)	scaffold_10:11412943-11412988(-) (11)//scaffold_8:9320517-9320562(+) (11)	NA	Q54V61	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7	AT2G02050.1	"NADH-ubiquinone oxidoreductase B18 subunit, putative "	LOC_Os03g03770.1	expressed protein	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity	GO:0005739|mitochondrion
Ptp.4068.2.S1_a_at	A	A1TS	POPTR_0010s11000	POPTR_0010s11000 (11)	scaffold_10:11410165-11410333(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4069.1.A1_at	A	A1TS	POPTR_0019s12360	POPTR_0019s12360 (9)	scaffold_19:13401364-13401788(-) (9)	NA	P27054	Endochitinase PR4	AT3G54420.1	homolog of carrot EP3-3 chitinase 	LOC_Os04g41680.1	"CHIT3 - Chitinase family protein precursor, expressed"	Medtr2g120640.1	"Glycoside hydrolase, family 19; Chitin-binding, type 1 "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis||GO:0006032|chitin catabolic process||GO:0009057|macromolecule catabolic process	GO:0004568|chitinase activity||GO:0008061|chitin binding	NA
Ptp.407.1.A1_at	A	A1TS	POPTR_0009s13560	POPTR_0009s13560 (11)	scaffold_9:10763447-10764788(+) (11)	NA	P55034	26S proteasome non-ATPase regulatory subunit 4	AT4G38630.1	regulatory particle non-ATPase 10 	LOC_Os03g13970.2	"26S proteasome non-ATPase regulatory subunit 4, putative, expressed"	Medtr5g022350.1	"von Willebrand factor, type A; Ubiquitin interacting motif "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4070.1.S1_at	A	A1TS	POPTR_0015s11320	POPTR_0015s11320 (11)	scaffold_15:11919328-11919569(+) (11)	POPTR_0012s10480 (6)	Q42522	"Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic"	AT3G48730.1	"glutamate-1-semialdehyde 2,1-aminomutase 2 "	LOC_Os08g41990.1	"aminotransferase, putative, expressed"	Medtr3g163620.1	"Glutamate-1-semialdehyde-2,1-aminomutase; "	NA	GO:0008483|transaminase activity||GO:0030170|pyridoxal phosphate binding	NA
Ptp.4071.1.S1_at	A	A1TS	POPTR_0018s10530	POPTR_0018s10530 (11)	scaffold_18:11449575-11449924(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4071.2.S1_s_at	A	A1TS	POPTR_0006s18800	POPTR_0006s18800 (11)	scaffold_18:11450002-11453495(-) (11)//scaffold_6:17478578-17482103(-) (11)	POPTR_0018s10540 (7)	A1XQR9	Small nuclear ribonucleoprotein E	AT4G30330.1	Small nuclear ribonucleoprotein family protein 	LOC_Os02g03440.1	"LSM domain containing protein, expressed"	Medtr2g127110.1	"Like-Sm ribonucleoprotein-related, core "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4073.1.S1_s_at	A	A1TS	POPTR_0014s12170	POPTR_0014s12170 (11)	scaffold_14:8997376-8997631(-) (11)	NA	O81416	Endoglucanase 17	AT4G02290.1	glycosyl hydrolase 9B13 	LOC_Os01g21070.1	"endoglucanase, putative, expressed"	Medtr1g108080.1	"Glycoside transferase, six-hairpin, subgroup "	GO:0005975|carbohydrate metabolic process	"GO:0004553|""hydrolase activity, hydrolyzing O-glycosyl compounds"""	NA
Ptp.4074.1.S1_at	A	A1MS	POPTR_0009s00940	POPTR_0009s00940 (11)	scaffold_9:1079706-1079824(+) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4075.1.S1_at	A	A1TS	POPTR_0009s09990	POPTR_0009s09990 (11)	scaffold_9:8704724-8704922(-) (11)	NA	NA	NA	AT2G01640.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. 	LOC_Os12g14110.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4077.1.S1_at	A	A1TS	POPTR_0003s19390	POPTR_0003s19390 (11)	scaffold_3:18128211-18128749(-) (11)	NA	Q09704	Exosome complex component rrp4	AT1G03360.1	ribosomal RNA processing 4 	LOC_Os04g43922.1	"exosome complex exonuclease rrp4, putative, expressed"	Medtr8g138160.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4078.1.S1_s_at	A	A1TS	POPTR_0002s21750	POPTR_0002s21750 (11)	scaffold_2:18318990-18319034(+) (11)	NA	Q9MB94	1-aminocyclopropane-1-carboxylate oxidase	AT1G05010.1	ethylene-forming enzyme 	LOC_Os09g27820.1	"1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed"	Medtr5g092760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.408.1.A1_at	A	A1TS	POPTR_0009s14840	POPTR_0009s14840 (10)	scaffold_9:11553660-11553858(+) (10)	NA	NA	NA	AT4G04190.2	unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os04g33510.2	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4080.1.A1_s_at	A	A2TS	POPTR_0006s24490	POPTR_0006s24490 (11)//POPTR_0012s11120 (11)	scaffold_12:11698749-11699371(+) (11)//scaffold_6:23082315-23082926(+) (11)	NA	Q54Y03	Probable adenylate kinase isoenzyme 6	AT5G60340.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os07g22950.1	"adenylate kinase isoenzyme 6, putative, expressed"	Medtr5g094960.2	"Probable adenylate kinase isoenzyme 6, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4082.1.S1_at	A	A1TS	POPTR_0009s13950	POPTR_0009s13950 (9)	scaffold_9:11030320-11031414(+) (9)	NA	Q5PNS9	Probable protein phosphatase 2C 64	AT4G38520.2	Protein phosphatase 2C family protein 	LOC_Os06g50380.2	"protein phosphatase 2C, putative, expressed"	Medtr7g092570.1	Protein phosphatase 2C; Sugar transporter superfamily; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4083.1.A1_at	A	A1TS	POPTR_0002s08530	POPTR_0002s08530 (11)	scaffold_2:5965368-5965457(+) (11)	NA	Q93ZH0	LysM domain-containing GPI-anchored protein 1	AT1G21880.2	lysm domain GPI-anchored protein 1 precursor 	LOC_Os02g53000.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	Medtr3g097500.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidoglycan-binding LysM "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.4083.1.A1_s_at	A	A1TS	POPTR_0002s08530	POPTR_0002s08530 (11)	scaffold_2:5964408-5965428(+) (11)	NA	Q93ZH0	LysM domain-containing GPI-anchored protein 1	AT1G21880.2	lysm domain GPI-anchored protein 1 precursor 	LOC_Os02g53000.1	"lysM domain-containing GPI-anchored protein precursor, putative, expressed"	Medtr3g097500.1	"Peptidase S1 and S6, chymotrypsin/Hap; Peptidoglycan-binding LysM "	GO:0016998|cell wall macromolecule catabolic process||GO:0071554|cell wall organization or biogenesis	NA	NA
Ptp.4084.1.S1_at	A	A1TS	POPTR_0014s18890	POPTR_0014s18890 (11)	scaffold_14:16431184-16431257(+) (11)	NA	NA	NA	AT5G48655.3	RING/U-box superfamily protein 	LOC_Os01g69040.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr5g068660.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4087.1.S1_at	A	A1TS	POPTR_0008s21110	POPTR_0008s21110 (11)	scaffold_8:15243028-15243844(-) (11)	NA	Q6MEE7	tRNA pseudouridine synthase A 1	AT3G06950.1	Pseudouridine synthase family protein 	LOC_Os05g19954.1	"tRNA pseudouridine synthase family protein, putative, expressed"	Medtr8g133980.1	tRNA pseudouridine synthase 	GO:0044260|cellular macromolecule metabolic process||GO:0001522|pseudouridine synthesis	GO:0009982|pseudouridine synthase activity||GO:0003723|RNA binding	NA
Ptp.4091.1.S1_at	A	A1TS	POPTR_0014s08490	POPTR_0014s08490 (9)	scaffold_14:6303533-6304361(-) (9)	POPTR_0002s16420 (7)	Q8RX88	CAAX prenyl protease 1 homolog	AT4G01320.1	Peptidase family M48 family protein 	LOC_Os02g45650.1	"peptidase, putative, expressed"	Medtr7g088450.1	"Peptidase M48, Ste24p "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0004222|metalloendopeptidase activity	GO:0016020|membrane
Ptp.4093.1.S1_at	A	A1TS	POPTR_0019s06040	POPTR_0019s06040 (9)	scaffold_19:6511314-6511782(+) (9)	NA	Q94CD1	Omega-hydroxypalmitate O-feruloyl transferase	AT5G17540.1	HXXXD-type acyl-transferase family protein 	LOC_Os10g35950.1	"transferase family protein, putative, expressed"	Medtr5g084620.1	Transferase 	NA	"GO:0016747|""transferase activity, transferring acyl groups other than amino-acyl groups"""	NA
Ptp.4094.1.S1_at	A	A1MS	POPTR_0003s16440	POPTR_0003s16440 (10)	scaffold_3:16036674-16037261(+) (10)	NA	Q9C7E8	Zinc finger protein CONSTANS-LIKE 15	AT2G33500.2	B-box type zinc finger protein with CCT domain 	LOC_Os02g49230.2	"CCT/B-box zinc finger protein, putative, expressed"	Medtr7g096570.1	"Zinc finger, B-box; CCT "	NA	GO:0008270|zinc ion binding	GO:0005622|intracellular
Ptp.4095.1.S1_at	A	A2TS	POPTR_0017s04390	POPTR_0017s04390 (10)//POPTR_0017s00580 (9)	scaffold_17:319537-319970(+) (10)//scaffold_17:3390180-3390613(-) (10)	NA	Q9T076	Early nodulin-like protein 2	AT4G28365.1	early nodulin-like protein 3 	LOC_Os01g54430.1	"plastocyanin-like domain containing protein, putative, expressed"	Medtr4g108120.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.4096.1.S1_at	A	A1TS	POPTR_0012s01060	POPTR_0012s01060 (9)	scaffold_12:747494-749214(+) (9)	NA	O22224	Uncharacterized protein At2g41620	AT2G41620.1	Nucleoporin interacting component (Nup93/Nic96-like) family protein 	LOC_Os03g22690.1	"nucleoporin interacting component, putative, expressed"	Medtr2g125990.1	Nucleoporin interacting component 	GO:0006810|transport	NA	GO:0005643|nuclear pore
Ptp.4097.2.A1_a_at	A	A1MS	POPTR_0009s13940	POPTR_0009s13940 (11)	scaffold_9:11011118-11011215(-) (11)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4097.2.A1_at	A	A1MS	POPTR_0009s13940	POPTR_0009s13940 (9)	scaffold_9:11011165-11011324(-) (9)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4099.1.S1_at	A	A1TS	POPTR_0001s10340	POPTR_0001s10340 (10)	scaffold_1:8035723-8035986(+) (10)	NA	Q9BZJ0	Crooked neck-like protein 1	AT5G41770.1	"crooked neck protein, putative / cell cycle protein, putative "	LOC_Os05g22260.1	"crooked neck, putative, expressed"	Medtr5g009540.1	"RNA-processing protein, HAT helix "	GO:0044260|cellular macromolecule metabolic process||GO:0006396|RNA processing	NA	GO:0005622|intracellular
Ptp.41.1.A1_at	A	A1TS	POPTR_0001s10090	POPTR_0001s10090 (11)	scaffold_1:7815907-7816202(-) (11)	NA	Q9SZ67	Probable WRKY transcription factor 19	AT1G64140.1	BEST Arabidopsis thaliana protein match is: loricrin-related (TAIR:AT5G64550.1); Has 3596 Blast hits to 2004 proteins in 150 species: Archae - 0; Bacteria - 54; Metazoa - 1597; Fungi - 38; Plants - 513; Viruses - 9; Other Eukaryotes - 1385 (source: NCBI BLink). 	LOC_Os01g43372.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.410.1.A1_s_at	A	A1TS	POPTR_0013s12380	POPTR_0013s12380 (11)	scaffold_13:13014436-13014665(-) (11)	NA	Q9M2K6	"Glucan endo-1,3-beta-glucosidase-like protein 1"	AT3G58100.1	plasmodesmata callose-binding protein 5 	LOC_Os06g34660.1	"X8 domain containing protein, expressed"	AC233675_22.1	X8 AC233675.1 104814-106418 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4100.1.A1_a_at	A	A1TS	POPTR_0002s07050	POPTR_0002s07050 (11)	scaffold_2:4767521-4767776(-) (11)	NA	P54772	Histidine decarboxylase	AT1G43710.1	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein 	LOC_Os02g33710.1	"decarboxylase, putative, expressed"	Medtr2g008250.1	Pyridoxal-dependent decarboxylase; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4101.1.S1_s_at	A	A1TS	POPTR_0878s00210	POPTR_0878s00210 (11)	scaffold_878:4906-4952(+) (11)	NA	Q03666	Probable glutathione S-transferase	AT1G78380.1	glutathione S-transferase TAU 19 	LOC_Os09g20220.1	"glutathione S-transferase, putative, expressed"	Medtr8g065760.1	"Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4102.2.A1_a_at	A	A1TS	POPTR_0001s00440	POPTR_0001s00440 (11)	scaffold_1:335892-336673(-) (11)	NA	P22988	L-lactate dehydrogenase A	AT4G17260.1	Lactate/malate dehydrogenase family protein 	LOC_Os02g01510.1	"lactate/malate dehydrogenase, putative, expressed"	Medtr5g012480.1	L-lactate/malate dehydrogenase 	GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity	NA
Ptp.4105.1.A1_at	A	A1TS	POPTR_0015s03620	POPTR_0015s03620 (10)	scaffold_15:3402857-3403422(-) (10)	NA	P73689	Protease 4	AT1G73990.1	signal peptide peptidase 	LOC_Os02g49570.1	"OsProtIV1 - Putative Protease IV homologue; Domain 2 is a SPH, expressed"	Medtr2g074180.1	"Peptidase S49, SppA "	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0008233|peptidase activity	NA
Ptp.4106.3.A1_a_at	A	A1TS	POPTR_0002s11510	POPTR_0002s11510 (11)	scaffold_2:8559877-8560084(-) (11)	NA	NA	NA	AT3G12210.2	DNA binding 	LOC_Os03g51880.1	"GA15368-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4106.3.A1_at	A	A1MS	POPTR_0002s11510	POPTR_0002s11510 (10)	scaffold_2:8559429-8559945(-) (10)	NA	NA	NA	AT3G12210.2	DNA binding 	LOC_Os03g51880.1	"GA15368-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4107.2.S1_a_at	A	A2TS	POPTR_0007s01520	POPTR_0007s01520 (9)//POPTR_0596s00210 (9)	scaffold_596:9629-9873(+) (9)//scaffold_7:847242-847477(-) (9)	NA	Q9LJP1	GDSL esterase/lipase 4	AT3G14225.1	GDSL-motif lipase 4 	LOC_Os02g44860.1	"GDSL-like lipase/acylhydrolase, putative, expressed"	Medtr6g031370.1	"Lipolytic enzyme, G-D-S-L "	GO:0006629|lipid metabolic process	"GO:0016788|""hydrolase activity, acting on ester bonds"""	NA
Ptp.411.1.A1_at	A	A1TS	POPTR_0005s04470	POPTR_0005s04470 (9)	scaffold_5:2989586-2990028(-) (9)	NA	Q28I38	DnaJ homolog subfamily B member 14	AT5G27240.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os01g27740.3	"dnaJ domain containing protein, expressed"	Medtr7g139960.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.4110.1.S1_at	A	A1TS	POPTR_0009s13460	POPTR_0009s13460 (9)	scaffold_9:10701451-10701483(+) (9)	NA	Q38896	Glycine-rich protein 2b	AT2G17870.1	cold shock domain protein 3 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.4110.1.S1_s_at	A	A1TS	POPTR_0009s13460	POPTR_0009s13460 (11)	scaffold_9:10701545-10701882(+) (11)	NA	Q38896	Glycine-rich protein 2b	AT2G17870.1	cold shock domain protein 3 	LOC_Os08g03520.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	Medtr8g089760.1	"Zinc finger, CCHC-type; Cold-shock protein, DNA-binding "	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding||GO:0008270|zinc ion binding	NA
Ptp.4110.2.S1_s_at	A	A1TS	POPTR_0002s22410	POPTR_0002s22410 (11)	scaffold_2:19108751-19109511(-) (11)	NA	Q56WD9	"3-ketoacyl-CoA thiolase 2, peroxisomal"	AT2G33150.1	peroxisomal 3-ketoacyl-CoA thiolase 3 	LOC_Os10g31950.1	"3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed"	Medtr4g023640.1	Thiolase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4111.3.S1_s_at	A	A1TS	POPTR_0013s01640	POPTR_0013s01640 (11)	scaffold_13:930147-930520(-) (11)	NA	NA	NA	AT1G56220.3	Dormancy/auxin associated family protein 	LOC_Os03g22270.3	"auxin-repressed protein, putative, expressed"	Medtr1g099940.1	Dormancyauxin associated 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4112.2.S1_at	A	A1TS	POPTR_0001s15840	POPTR_0001s15840 (11)	scaffold_1:12675700-12676787(+) (11)	POPTR_0003s07420 (7)	Q39079	Chaperone protein dnaJ 13	AT2G35720.1	DNAJ heat shock N-terminal domain-containing protein 	LOC_Os10g36370.1	"heat shock protein DnaJ, putative, expressed"	Medtr5g012600.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.4113.1.S1_at	A	A1TS	POPTR_0006s12280	POPTR_0006s12280 (11)	scaffold_6:9433625-9435570(+) (11)	NA	P38094	Protein fluG	AT3G53180.1	glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases 	LOC_Os10g31820.1	"fluG, putative, expressed"	Medtr3g043930.1	Glutamine synthetase type I 	GO:0006807|nitrogen compound metabolic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.4115.1.S1_at	A	A1TS	POPTR_0001s46570	POPTR_0001s46570 (11)	scaffold_1:46939875-46940168(+) (11)	NA	Q94C59	Patellin-4	AT1G30690.2	Sec14p-like phosphatidylinositol transfer family protein 	LOC_Os06g45990.2	"patellin-5, putative, expressed"	Medtr4g144520.1	"emp24/gp25L/p24; Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4116.1.S1_at	A	A1TS	POPTR_0004s21020	POPTR_0004s21020 (10)	scaffold_4:20336071-20336338(+) (10)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4116.1.S1_s_at	A	A1TS	POPTR_0004s21020	POPTR_0004s21020 (11)	scaffold_4:20336152-20336422(+) (11)	NA	Q7FAE1	Momilactone A synthase	AT2G47140.1	NAD(P)-binding Rossmann-fold superfamily protein 	LOC_Os04g10010.1	"sex determination protein tasselseed-2, putative, expressed"	Medtr7g077280.1	Short-chain dehydrogenase/reductase SDR 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4118.1.S1_at	A	A1TS	POPTR_0018s10960	POPTR_0018s10960 (11)	scaffold_18:11787342-11788468(-) (11)	NA	Q75K12	5'-nucleotidase domain-containing protein DDB_G0275467	AT2G23890.1	"HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase "	LOC_Os09g25640.1	"5-nucleotidase domain-containing protein, putative, expressed"	Medtr5g089940.1	"HAD superfamily (subfamily IG) hydrolase, 5-Nucleotidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4121.1.S1_s_at	A	A1TS	POPTR_0002s25620	POPTR_0002s25620 (11)	scaffold_2:22713694-22714009(+) (11)	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4122.1.A1_at	A	A1TS	POPTR_0019s02320	POPTR_0019s02320 (11)	scaffold_19:2150341-2150851(-) (11)	NA	NA	NA	AT5G28640.1	SSXT family protein 	LOC_Os03g52320.1	"GRF-interacting factor 1, putative, expressed"	Medtr1g094100.1	SSXT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4123.1.S1_at	A	A1TS	POPTR_0008s04210	POPTR_0008s04210 (10)	scaffold_8:2365491-2365586(+) (10)	NA	O49169	Elongation factor 1-alpha	AT5G60390.3	GTP binding Elongation factor Tu family protein 	LOC_Os03g08050.1	"elongation factor Tu, putative, expressed"	Medtr4g012200.1	"Translation elongation factor, GTP-binding "	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.4124.1.S1_at	A	A1TS	POPTR_0001s06740	POPTR_0001s06740 (11)	scaffold_1:5159278-5160513(-) (11)	NA	NA	NA	AT5G06970.1	Protein of unknown function (DUF810) 	LOC_Os03g47930.1	expressed protein	Medtr8g043680.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4125.1.S1_s_at	A	A1TS	POPTR_0001s13290	POPTR_0001s13290 (9)	scaffold_1:10384311-10384428(-) (9)	NA	NA	NA	AT2G33510.1	CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28070.1); Has 3898 Blast hits to 1138 proteins in 179 species: Archae - 0; Bacteria - 40; Metazoa - 2353; Fungi - 242; Plants - 298; Viruses - 92; Other Eukaryotes - 873 (source: NCBI BLink). 	LOC_Os02g31140.1	"major ampullate spidroin 2-2, putative, expressed"	Medtr7g005170.1	WW/Rsp5/WWP 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4127.1.S1_s_at	A	A1TS	POPTR_0007s07600	POPTR_0007s07600 (11)	scaffold_7:5968337-5968406(+) (11)	NA	Q9LT17	E3 ubiquitin ligase BIG BROTHER-related	AT3G19910.1	RING/U-box superfamily protein 	LOC_Os08g43480.1	"zinc finger, C3HC4 type family protein, expressed"	Medtr1g143530.2	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.413.1.S1_at	A	A1TS	POPTR_0001s19530	POPTR_0001s19530 (11)	scaffold_1:17239826-17240843(-) (11)	NA	O96552	Charged multivesicular body protein 1	AT1G17730.1	vacuolar protein sorting 46.1 	LOC_Os06g43590.3	"SNF7 domain containing protein, putative, expressed"	Medtr2g121700.1	Snf7 	GO:0015031|protein transport	NA	NA
Ptp.4130.1.S1_s_at	A	A1TS	POPTR_0006s07310	POPTR_0006s07310 (11)	scaffold_6:5251213-5251535(-) (11)	NA	NA	NA	AT5G57123.1	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os06g44980.1	conserved hypothetical protein	Medtr2g042970.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4132.1.S1_at	A	A1TS	POPTR_0018s12030	POPTR_0018s12030 (11)	scaffold_18:12647579-12648110(+) (11)	NA	P51425	60S ribosomal protein L39	AT4G31985.1	Ribosomal protein L39 family protein 	LOC_Os02g55370.1	"60S ribosomal protein L39, putative, expressed"	Medtr3g137960.1	Ribosomal protein L39e 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4133.1.S1_at	A	A1TS	POPTR_0008s10350	POPTR_0008s10350 (11)	scaffold_8:6486728-6488676(+) (11)	NA	Q499W2	DNA replication complex GINS protein SLD5	AT5G49010.1	DNA replication protein-related 	LOC_Os05g05150.1	"SLD5 - Putative GINS complex subunit, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4138.1.S1_at	A	A1TS	POPTR_0004s18640	POPTR_0004s18640 (11)	scaffold_4:18458028-18458265(-) (11)	NA	Q93ZY2	Rop guanine nucleotide exchange factor 1	AT4G38430.1	rho guanyl-nucleotide exchange factor 1 	LOC_Os09g37270.1	"ATROPGEF7/ROPGEF7, putative, expressed"	Medtr7g070990.1	Protein of unknown function DUF315 	NA	GO:0005089|Rho guanyl-nucleotide exchange factor activity	NA
Ptp.4139.1.S1_at	A	A1TS	POPTR_0012s13350	POPTR_0012s13350 (11)	scaffold_12:13539482-13539969(+) (11)	NA	Q8LPG9	Protein IQ-DOMAIN 14	AT5G62070.1	IQ-domain 23 	LOC_Os04g48160.1	"IQ calmodulin-binding motif family protein, putative, expressed"	Medtr1g129280.1	IQ calmodulin-binding region 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.414.1.S1_at	A	A1TS	POPTR_0017s11370	POPTR_0017s11370 (11)	scaffold_17:11133580-11133864(+) (11)//scaffold_891:1807-2010(+) (9)	NA	Q9LFP7	Probable receptor-like protein kinase At5g49770	AT5G15080.1	Protein kinase superfamily protein 	LOC_Os01g40590.1	"tyrosine protein kinase domain containing protein, putative, expressed"	Medtr5g039490.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4142.1.S1_s_at	A	A1TS	POPTR_0017s02990	POPTR_0017s02990 (11)	scaffold_17:2165142-2165332(+) (11)	NA	Q38851	Transcription repressor MYB6	AT4G09460.1	myb domain protein 6 	LOC_Os08g43550.1	"MYB family transcription factor, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4143.1.S1_at	A	A1TS	POPTR_0016s02550	POPTR_0016s02550 (11)	scaffold_16:1253956-1254002(-) (11)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT5G05080.2	ubiquitin-conjugating enzyme 22 	LOC_Os06g45000.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g104500.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4143.1.S1_s_at	A	A1TS	POPTR_0016s02550	POPTR_0016s02550 (11)	scaffold_16:1253653-1254217(-) (11)	NA	Q9FF66	Ubiquitin-conjugating enzyme E2 22	AT5G05080.2	ubiquitin-conjugating enzyme 22 	LOC_Os06g45000.2	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g104500.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4145.2.A1_a_at	A	A1TS	POPTR_0008s20440	POPTR_0008s20440 (11)	scaffold_8:14191200-14192050(-) (11)	NA	Q944H2	"Protein ABCI12, chloroplastic"	AT3G21580.1	cobalt ion transmembrane transporters 	LOC_Os05g33230.1	"cobalt ion transporter, putative, expressed"	Medtr2g026300.1	Cobalt transport protein 	GO:0009236|cobalamin biosynthetic process||GO:0044281|small molecule metabolic process||GO:0006824|cobalt ion transport||GO:0044283|small molecule biosynthetic process	GO:0015087|cobalt ion transmembrane transporter activity	NA
Ptp.4146.1.S1_s_at	A	A1TS	POPTR_0007s05490	POPTR_0007s05490 (11)	scaffold_7:3577242-3577532(+) (11)	NA	Q9XEE2	Annexin D2	AT5G65020.1	annexin 2 	LOC_Os06g11800.1	"annexin, putative, expressed"	Medtr5g072570.1	Annexin 	NA	GO:0005544|calcium-dependent phospholipid binding||GO:0005509|calcium ion binding	NA
Ptp.4148.1.A1_at	A	A1TS	POPTR_0008s17810	POPTR_0008s17810 (11)	scaffold_8:11957850-11958187(+) (11)	NA	Q9CAG3	"Lipoxygenase 6, choloroplastic"	AT1G67560.1	PLAT/LH2 domain-containing lipoxygenase family protein 	LOC_Os03g08220.1	"lipoxygenase protein, putative, expressed"	AC233656_19.3	Lipoxygenase AC233656.1 68212-72891 E EGN_Mt090430 200	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.415.1.A1_at	A	A1TS	POPTR_0005s23920	POPTR_0005s23920 (9)	scaffold_5:22616218-22616738(-) (9)	NA	P42390	"Indole-3-glycerol phosphate lyase, chloroplastic"	AT3G54640.1	tryptophan synthase alpha chain 	LOC_Os07g08430.1	"indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed"	NA	NA	GO:0034641|cellular nitrogen compound metabolic process||GO:0044281|small molecule metabolic process||GO:0006568|tryptophan metabolic process	GO:0004834|tryptophan synthase activity	NA
Ptp.4150.1.A1_at	A	A1TS	POPTR_0019s08280	POPTR_0019s08280 (11)	scaffold_19:9761962-9762327(+) (11)	NA	Q6P7K5	UPF0510 protein INM02	AT1G65270.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	LOC_Os11g16320.1	expressed protein	Medtr7g089960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4151.1.A1_s_at	A	A2TS	POPTR_0017s07350	POPTR_0017s07350 (11)//POPTR_0328s00200 (9)	scaffold_17:5703430-5703924(-) (11)//scaffold_328:11358-11846(+) (11)	NA	P38418	"Lipoxygenase 2, chloroplastic"	AT3G45140.1	lipoxygenase 2 	LOC_Os08g39850.1	"lipoxygenase, chloroplast precursor, putative, expressed"	Medtr3g111190.1	"Lipoxygenase; Lipase/lipooxygenase, PLAT/LH2 "	GO:0055114|oxidation reduction	"GO:0016702|""oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen""||GO:0046872|metal ion binding"	NA
Ptp.4154.1.S1_s_at	A	A1TS	POPTR_0003s06460	POPTR_0003s06460 (11)	scaffold_3:7941557-7942028(-) (11)	NA	P24465	Cytochrome P450 71A1	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4156.1.S1_a_at	A	A1TS	POPTR_0019s09700	POPTR_0019s09700 (11)	scaffold_19:11318784-11319194(+) (11)	NA	Q15427	Splicing factor 3B subunit 4	AT4G10110.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os05g35274.2	"RNA recognition motif containing protein, putative, expressed"	Medtr1g122170.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4157.1.S1_s_at	A	A1TS	POPTR_0010s08110	POPTR_0010s08110 (11)	scaffold_10:9041834-9042232(-) (11)	NA	P42158	Casein kinase I isoform delta-like	AT3G23340.1	casein kinase I-like 10 	LOC_Os02g56560.1	"CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed"	Medtr1g090440.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4160.1.S1_at	A	A1TS	POPTR_0016s11810	POPTR_0016s11810 (9)	scaffold_16:10980368-10980891(+) (9)	NA	O55236	mRNA-capping enzyme	AT3G09100.2	mRNA capping enzyme family protein 	LOC_Os12g09120.1	"mRNA-capping enzyme, putative, expressed"	Medtr4g012250.1	"Dual specificity protein phosphatase; mRNA capping enzyme; Nucleic acid-binding, OB-fold, subgroup "	GO:0006470|protein amino acid dephosphorylation||GO:0044260|cellular macromolecule metabolic process||GO:0006370|mRNA capping	GO:0004484|mRNA guanylyltransferase activity||GO:0008138|protein tyrosine/serine/threonine phosphatase activity	NA
Ptp.4164.1.S1_s_at	A	A1TS	POPTR_0002s24770	POPTR_0002s24770 (9)	scaffold_2:22035523-22038260(+) (11)	NA	Q09020	Wound-induced basic protein	AT3G07230.1	wound-responsive protein-related 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4167.1.S1_at	A	A1TS	POPTR_0005s26650	POPTR_0005s26650 (9)	scaffold_5:24571344-24572290(+) (9)	NA	Q9XHM1	Eukaryotic translation initiation factor 3 subunit C	AT3G56150.2	eukaryotic translation initiation factor 3C 	LOC_Os07g03230.2	"eukaryotic translation initiation factor 3 subunit C, putative, expressed"	Medtr7g143620.1	"Proteasome component region PCI; Eukaryotic translation initiation factor 3 subunit 8, C-terminal; Eukaryotic translation initiation factor 3 subunit 8, N-terminal; Winged helix repressor DNA-binding "	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	GO:0005852|eukaryotic translation initiation factor 3 complex
Ptp.4168.1.S1_at	A	A1MA	POPTR_0014s06660	POPTR_0014s06660 (11)	scaffold_14:5062244-5062300(+) (11)	NA	Q9LPC6	Armadillo repeat-containing kinesin-like protein 2	AT1G01950.1	armadillo repeat kinesin 2 	LOC_Os06g04560.1	"kinesin motor domain containing protein, expressed"	Medtr5g011660.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.417.1.S1_s_at	A	A1TS	POPTR_0012s04090	POPTR_0012s04090 (11)	scaffold_12:3311454-3311729(+) (11)	NA	P32289	Glutamine synthetase nodule isozyme	AT5G37600.1	glutamine synthase clone R1 	LOC_Os02g50240.1	"glutamine synthetase, catalytic domain containing protein, expressed"	Medtr3g087420.1	Glutamine synthetase type I 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0006542|glutamine biosynthetic process	GO:0004356|glutamate-ammonia ligase activity	NA
Ptp.4170.1.S1_at	A	A1TS	POPTR_0011s09870	POPTR_0011s09870 (10)	scaffold_11:12320246-12320925(-) (10)	NA	Q9S7T1	"Bromodomain-containing protein GTE3, chloroplastic"	AT1G06230.3	global transcription factor group E4 	LOC_Os01g11580.1	"bromodomain containing protein, expressed"	Medtr4g109460.1	Bromodomain; Protein of unknown function GLTT 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4171.1.A1_at	A	A1TS	POPTR_0011s09790	POPTR_0011s09790 (11)	scaffold_11:12241971-12243986(+) (11)	NA	NA	NA	AT3G14450.1	CTC-interacting domain 9 	LOC_Os01g11120.1	"CID11, putative, expressed"	Medtr3g122880.1	"Ataxin-2, C-terminal; Nucleotide-binding, alpha-beta plait "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4172.1.A1_at	A	A1TS	POPTR_0003s19820	POPTR_0003s19820 (11)	scaffold_3:18441880-18442065(-) (11)	NA	Q8S3N1	E3 ubiquitin-protein ligase SINAT5	AT3G61790.1	Protein with RING/U-box and TRAF-like domains 	LOC_Os07g46560.1	"seven in absentia protein family domain containing protein, expressed"	Medtr3g020180.1	"Zinc finger, RING-type; TRAF-like; "	GO:0007275|multicellular organismal development||GO:0006511|ubiquitin-dependent protein catabolic process	NA	GO:0005634|nucleus
Ptp.4175.1.S1_s_at	A	A1TS	POPTR_0011s11410	POPTR_0011s11410 (11)	scaffold_11:14180861-14181299(+) (11)	NA	Q9FPS2	Ubiquitin carboxyl-terminal hydrolase 25	AT3G14400.1	ubiquitin-specific protease 25 	LOC_Os05g43480.1	"ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed"	Medtr8g145470.1	"Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 "	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004221|ubiquitin thiolesterase activity	NA
Ptp.4176.1.S1_at	A	A1TS	POPTR_0010s05300	POPTR_0010s05300 (11)	scaffold_10:6768096-6768294(+) (11)	NA	Q0WVM4	Probable LRR receptor-like serine/threonine-protein kinase At2g23950	AT1G60800.1	NSP-interacting kinase 3 	LOC_Os01g07630.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g035120.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4179.1.S1_s_at	A	A1TS	POPTR_0001s16440	POPTR_0001s16440 (11)	scaffold_1:13235789-13235963(+) (11)	NA	P53569	CCAAT/enhancer-binding protein zeta	AT1G72440.1	CCAAT-binding factor 	LOC_Os09g02810.1	"CCAAT/enhancer-binding protein, putative, expressed"	Medtr8g138880.1	CBF 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4180.1.A1_a_at	A	A1TS	POPTR_0008s00500	POPTR_0008s00500 (11)	scaffold_8:207629-207885(-) (11)	NA	NA	NA	AT3G20260.1	Protein of unknown function (DUF1666) 	LOC_Os08g40820.2	expressed protein	Medtr4g158140.1	Ribosomal protein L34e 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4182.1.S1_at	A	A1TS	POPTR_0001s04590	POPTR_0001s04590 (11)	scaffold_1:3577325-3577854(-) (11)	NA	NA	NA	AT2G44290.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 	LOC_Os03g07100.1	"LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed"	Medtr4g133890.1	Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4184.1.S1_s_at	A	A1TS	POPTR_0006s00280	POPTR_0006s00280 (11)	scaffold_6:60651-61165(+) (11)	NA	P54567	Uncharacterized protein yqkD	AT4G17150.1	alpha/beta-Hydrolases superfamily protein 	LOC_Os06g40730.1	"protein with a conserved N-terminal region, putative, expressed"	Medtr2g033450.1	"Peptidase S10, serine carboxypeptidase "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4185.1.S1_at	A	A1TS	POPTR_0006s29080	POPTR_0006s29080 (11)	scaffold_6:26574059-26574513(+) (11)	NA	Q9S9K9	Transcription factor MYB3	AT1G22640.1	myb domain protein 3 	LOC_Os03g29614.1	"myb-like DNA-binding domain containing protein, putative, expressed"	Medtr5g087140.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4186.1.A1_s_at	A	A1TS	POPTR_0005s25240	POPTR_0005s25240 (11)	scaffold_5:23542937-23543583(-) (11)	NA	Q9SFZ3	Transcription factor bHLH110	AT1G27660.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein 	LOC_Os01g01600.1	"ethylene-responsive protein related, putative, expressed"	AC225611_3.1	Helix-loop-helix DNA-binding AC225611.10 52270-55454 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4187.1.S1_at	A	A1TS	POPTR_0009s15010	POPTR_0009s15010 (11)	scaffold_9:11648781-11648824(-) (11)	NA	P27880	18.2 kDa class I heat shock protein	AT2G29500.1	HSP20-like chaperones superfamily protein 	LOC_Os03g15960.1	"hsp20/alpha crystallin family protein, putative, expressed"	Medtr6g067320.1	HSP20-like chaperone 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4188.1.S1_at	A	A1TS	POPTR_0014s09400	POPTR_0014s09400 (11)	scaffold_14:6971724-6973318(-) (11)	NA	Q9M364	Histone-lysine N-methyltransferase ATX3	AT3G61740.2	SET domain protein 14 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4188.1.S1_s_at	A	A2TS	POPTR_0002s17180	POPTR_0002s17180 (11)//POPTR_0014s09400 (11)	scaffold_14:6971894-6973622(-) (11)//scaffold_2:12946852-12948748(-) (11)	NA	Q9M364	Histone-lysine N-methyltransferase ATX3	AT3G61740.2	SET domain protein 14 	LOC_Os01g11952.1	"histone-lysine N-methyltransferase ATX5, putative, expressed"	AC235758_8.1	"PWWP; Nuclear protein SET; SET-related region; SAND-like; Zinc finger, FYVE/PHD-type AC235758.1 34452-44299 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4190.1.S1_at	A	A1TS	POPTR_0001s14040	POPTR_0001s14040 (11)	scaffold_1:11052813-11052952(+) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.4190.1.S1_x_at	A	A1TS	POPTR_0001s14040	POPTR_0001s14040 (11)	scaffold_1:11052083-11052952(+) (11)	NA	Q05046	"Chaperonin CPN60-2, mitochondrial"	AT3G23990.1	heat shock protein 60 	LOC_Os10g32550.1	"T-complex protein, putative, expressed"	Medtr1g111820.1	"GroEL-like chaperone, ATPase "	GO:0044260|cellular macromolecule metabolic process||GO:0044267|cellular protein metabolic process	GO:0005515|protein binding||GO:0005524|ATP binding	NA
Ptp.4191.1.A1_at	A	A1TS	POPTR_0003s04320	POPTR_0003s04320 (10)	scaffold_3:5027907-5028648(-) (10)	NA	Q5HWH7	5'-nucleotidase surE	AT1G72880.1	Survival protein SurE-like phosphatase/nucleotidase 	LOC_Os01g51280.1	"5-nucleotidase surE, putative, expressed"	Medtr2g120880.1	Survival protein SurE 	NA	GO:0016787|hydrolase activity	NA
Ptp.4193.1.S1_at	A	A1TS	POPTR_0003s09720	POPTR_0003s09720 (11)	scaffold_3:10971617-10971949(-) (11)	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4193.2.S1_s_at	A	A2TS	POPTR_0001s01760	POPTR_0003s09720 (11)//POPTR_0001s01760 (11)	scaffold_1:1282867-1283027(+) (11)//scaffold_3:10973419-10973579(-) (11)	NA	Q54NQ0	26S proteasome non-ATPase regulatory subunit 13	AT5G45620.1	Proteasome component (PCI) domain protein 	LOC_Os01g32800.2	"proteasome subunit, putative, expressed"	Medtr5g028100.1	Proteasome component region PCI 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4194.1.S1_x_at	A	A1TS	POPTR_0005s14680	POPTR_0005s14680 (9)	scaffold_5:11681085-11681253(+) (9)	NA	Q1S9I9	Probable histone H2B.1	AT3G45980.1	Histone superfamily protein 	LOC_Os03g17084.1	"Core histone H2A/H2B/H3/H4 domain containing protein, putative"	Medtr4g078860.1	Histone core; Histone-fold 	NA	GO:0003677|DNA binding	NA
Ptp.4195.1.S1_at	A	A1TS	POPTR_0006s11860	POPTR_0006s11860 (11)	scaffold_18:1498489-1498891(+) (9)//scaffold_6:9050295-9051232(+) (11)	NA	Q42806	"Pyruvate kinase, cytosolic isozyme"	AT3G52990.1	Pyruvate kinase family protein 	LOC_Os11g05110.2	"pyruvate kinase, putative, expressed"	Medtr1g073680.1	Pyruvate kinase; ; ; 	GO:0044282|small molecule catabolic process||GO:0006096|glycolysis||GO:0044281|small molecule metabolic process	GO:0030955|potassium ion binding||GO:0000287|magnesium ion binding||GO:0004743|pyruvate kinase activity	NA
Ptp.4197.1.S1_s_at	A	A1TS	POPTR_0015s07550	POPTR_0015s07550 (11)	scaffold_15:8839388-8839687(+) (11)	NA	Q40255	Probable aldehyde dehydrogenase	AT5G62530.1	aldehyde dehydrogenase 12A1 	LOC_Os05g45960.1	"aldehyde dehydrogenase, putative, expressed"	Medtr8g112760.1	"Carbamoyl-phosphate synthase L chain, ATP-binding "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4199.1.S1_s_at	A	A1TS	POPTR_0016s14520	POPTR_0016s14520 (10)	scaffold_16:13724471-13724969(-) (10)	NA	NA	NA	AT5G01910.1	unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). 	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4200.1.S1_s_at	A	A1TS	POPTR_0007s04160	POPTR_0007s04160 (11)	scaffold_7:2508287-2508969(+) (11)	NA	P49107	"Photosystem I reaction center subunit N, chloroplastic"	AT5G64040.1	"photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) "	LOC_Os12g08770.1	"photosystem I reaction center subunit N, chloroplast precursor, putative, expressed"	Medtr3g144130.1	Photosystem I reaction centre subunit N 	GO:0015979|photosynthesis	GO:0005515|protein binding	GO:0042651|thylakoid membrane||GO:0009522|photosystem I
Ptp.4201.1.S1_s_at	A	A1TS	POPTR_0010s16860	POPTR_0010s16860 (11)	scaffold_10:15680864-15681342(-) (11)	NA	NA	NA	AT2G03440.1	nodulin-related protein 1 	LOC_Os03g11220.1	"keratin, type I cytoskeletal 9, putative, expressed"	Medtr4g115540.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4202.1.S1_s_at	A	A1TS	POPTR_0015s12220	POPTR_0015s12220 (11)	scaffold_15:12571834-12573444(+) (11)	NA	Q84WM7	Pectinesterase PPME1	AT1G69940.1	Pectin lyase-like superfamily protein 	LOC_Os12g37660.1	"pectinesterase, putative, expressed"	Medtr8g133070.1	Pectinesterase 	GO:0042545|cell wall modification||GO:0071554|cell wall organization or biogenesis||GO:0071555|cell wall organization||GO:0008150|biological_process	GO:0030599|pectinesterase activity	GO:0005618|cell wall
Ptp.4203.1.S1_at	A	A1TS	POPTR_0005s22070	POPTR_0005s22070 (11)	scaffold_5:21075653-21075732(-) (11)	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4203.1.S1_s_at	A	A1TS	POPTR_0005s22070	POPTR_0005s22070 (11)	scaffold_5:21071248-21073615(-) (11)	NA	Q43463	Ras-related protein Rab7	AT4G09720.1	RAB GTPase homolog G3A 	LOC_Os01g51700.1	"ras-related protein, putative, expressed"	Medtr4g141030.1	"Sigma-54 factor, interaction region; Ras small GTPase, Rab type "	GO:0023046|signaling process||GO:0007264|small GTPase mediated signal transduction||GO:0023060|signal transmission||GO:0023052|signaling	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4205.1.S1_at	A	A1TS	POPTR_0002s11120	POPTR_0002s11120 (9)	scaffold_2:8143571-8143987(-) (9)	NA	O81635	Kinesin-4	AT2G22610.1	Di-glucose binding protein with Kinesin motor domain 	LOC_Os03g02290.1	"kinesin motor domain containing protein, putative, expressed"	Medtr5g032890.1	"Kinesin, motor region "	GO:0007018|microtubule-based movement	GO:0003777|microtubule motor activity||GO:0005524|ATP binding	NA
Ptp.4207.1.A1_at	A	A1TS	POPTR_0007s04470	POPTR_0007s04470 (9)	scaffold_7:2764506-2764808(-) (9)	NA	NA	NA	AT5G09270.2	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). 	LOC_Os01g64190.1	expressed protein	Medtr1g124960.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.421.1.A1_at	A	A1TS	POPTR_0008s10700	POPTR_0008s10700 (11)	scaffold_8:6719597-6721124(+) (11)	NA	P72740	Dihydrolipoyl dehydrogenase	AT3G16950.1	lipoamide dehydrogenase 1 	LOC_Os01g23610.1	"dihydrolipoyl dehydrogenase, putative, expressed"	Medtr8g137840.1	FAD-dependent pyridine nucleotide-disulphide oxidoreductase 	GO:0045454|cell redox homeostasis||GO:0055114|oxidation reduction	GO:0016491|oxidoreductase activity||GO:0050660|FAD binding	GO:0005737|cytoplasm
Ptp.4212.1.S1_a_at	A	A1TS	POPTR_0014s16220	POPTR_0014s16220 (11)	scaffold_14:12312632-12314156(+) (11)	NA	Q9SI37	WRKY transcription factor 1	AT2G04880.2	zinc-dependent activator protein-1 	LOC_Os07g39480.1	"OsWRKY78 - Superfamily of TFs having WRKY and zinc finger domains, expressed"	Medtr3g077040.1	DNA-binding WRKY 	GO:0045449|regulation of transcription||GO:0034645|cellular macromolecule biosynthetic process	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity	NA
Ptp.4213.1.S1_at	A	A1TS	POPTR_0018s14880	POPTR_0018s14880 (9)	scaffold_18:14909621-14910818(+) (9)	NA	NA	NA	AT5G58210.4	hydroxyproline-rich glycoprotein family protein 	LOC_Os02g42550.1	expressed protein	Medtr6g083870.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4215.1.S1_at	A	A1TS	POPTR_0008s11340	POPTR_0008s11340 (9)	scaffold_8:7187721-7188228(+) (9)	NA	Q9CA40	Nudix hydrolase 1	AT1G68760.1	nudix hydrolase  1 	NA	NA	Medtr5g071730.1	NUDIX hydrolase 	NA	GO:0016787|hydrolase activity	NA
Ptp.4216.1.S1_at	A	A1TS	POPTR_0002s10790	POPTR_0002s10790 (9)	scaffold_2:7837324-7837385(+) (9)	NA	Q9VTG7	Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase P	AT1G27600.2	Nucleotide-diphospho-sugar transferases superfamily protein 	LOC_Os10g13810.1	"glycosyltransferase family 43 protein, putative, expressed"	Medtr3g127830.1	"Glycosyl transferase, family 43 "	NA	GO:0015018|galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity	GO:0016020|membrane
Ptp.4217.2.S1_s_at	A	A1TS	POPTR_0003s20130	POPTR_0003s20130 (11)	scaffold_3:18719460-18719641(+) (11)	NA	Q94AR4	Polyadenylate-binding protein-interacting protein 2	AT2G41430.5	dehydration-induced protein (ERD15) 	LOC_Os07g46670.3	"early response to dehydration 15, putative, expressed"	Medtr3g026140.1	Aldehyde dehydrogenase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4218.1.S1_s_at	A	A1TS	POPTR_0010s16060	POPTR_0010s16060 (11)	scaffold_10:15122282-15122384(+) (11)	NA	Q9LUV2	Probable protein Pop3	AT3G17210.1	heat stable protein 1 	LOC_Os01g33160.1	"stress responsive A/B Barrel domain containing protein, expressed"	Medtr8g132820.1	Dimeric alpha-beta barrel 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4219.1.S1_s_at	A	A1TS	POPTR_0011s04710	POPTR_0011s04710 (11)	scaffold_11:4684394-4684754(-) (11)	NA	P43309	"Polyphenol oxidase, chloroplastic"	NA	NA	LOC_Os04g53300.1	"polyphenol oxidase, putative, expressed"	Medtr2g014720.1	Tyrosinase 	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4220.2.S1_a_at	A	A1TS	POPTR_0001s09860	POPTR_0001s09860 (11)	scaffold_1:7613849-7614406(-) (11)	NA	Q9CAK8	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic"	AT1G63970.1	isoprenoid F 	LOC_Os02g45660.1	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed"	Medtr5g010080.1	MECDP-synthase 	GO:0016114|terpenoid biosynthetic process	"GO:0008685|""2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity"""	NA
Ptp.4221.1.A1_at	A	A1TS	POPTR_0001s45920	POPTR_0001s45920 (11)	scaffold_1:46428896-46428972(+) (11)	NA	Q9SV84	Probable aquaporin NIP5-1	AT4G10380.1	NOD26-like intrinsic protein 5;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4221.1.A1_x_at	A	A1TS	POPTR_0001s45920	POPTR_0001s45920 (11)	scaffold_1:46428898-46429180(+) (11)	NA	Q9SV84	Probable aquaporin NIP5-1	AT4G10380.1	NOD26-like intrinsic protein 5;1 	LOC_Os10g36924.1	"aquaporin protein, putative, expressed"	Medtr4g022340.1	Sugar transporter superfamily; Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.4229.1.S1_s_at	A	A1TS	POPTR_0016s13190	POPTR_0016s13190 (11)	scaffold_16:12440167-12440558(+) (11)	NA	NA	NA	AT5G01590.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). "	NA	NA	Medtr4g012040.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4230.1.S1_at	A	A1TS	POPTR_0011s03770	POPTR_0011s03770 (10)	scaffold_11:3828450-3828973(-) (10)	NA	O81905	Receptor-like serine/threonine-protein kinase SD1-8	AT4G21380.1	receptor kinase 3 	LOC_Os07g36544.2	"serine/threonine-protein kinase receptor precursor, putative, expressed"	Medtr2g011240.1	Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation||GO:0032501|multicellular organismal process||GO:0023052|signaling||GO:0048544|recognition of pollen	GO:0005529|sugar binding||GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4232.1.S1_s_at	A	A1TS	POPTR_0016s11980	POPTR_0016s11980 (11)	scaffold_16:11156888-11157019(+) (11)	NA	Q869R9	Myb-like protein J	AT2G38090.1	Duplicated homeodomain-like superfamily protein 	LOC_Os01g04930.1	"MYB family transcription factor, putative, expressed"	Medtr5g078240.1	Homeodomain-related; 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4233.1.S1_at	A	A1TS	POPTR_0001s27200	POPTR_0001s27200 (9)	scaffold_1:26114746-26115200(+) (10)	NA	NA	NA	AT3G08020.1	PHD finger family protein 	LOC_Os12g34330.1	"protein binding protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4235.1.S1_at	A	A1TS	POPTR_0015s05090	POPTR_0015s05090 (11)	scaffold_15:5405238-5405874(-) (11)	NA	Q9LD37	"Probable cyclic nucleotide-gated ion channel 20, chloroplastic"	AT3G17700.1	cyclic nucleotide-binding transporter 1 	LOC_Os02g53340.2	"cyclic nucleotide-gated ion channel, putative, expressed"	Medtr6g074020.1	Cyclic nucleotide-binding; Ion transport protein 	GO:0006811|ion transport	GO:0005216|ion channel activity	GO:0016020|membrane
Ptp.4237.1.S1_at	A	A1TS	POPTR_0003s11430	POPTR_0003s11430 (11)	scaffold_3:12236431-12236550(-) (11)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4237.1.S1_s_at	A	A1TS	POPTR_0003s11430	POPTR_0003s11430 (11)	scaffold_3:12236385-12236498(-) (11)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4238.1.S1_s_at	A	A1TS	POPTR_0016s08670	POPTR_0016s08670 (11)	scaffold_16:6470271-6470648(+) (11)	NA	NA	NA	AT3G09670.2	Tudor/PWWP/MBT superfamily protein 	LOC_Os11g19810.2	"PWWP domain containing protein, expressed"	Medtr1g086970.1	PWWP; Calcium-binding EF-hand 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4239.1.A1_at	A	A1TS	POPTR_0001s06100	POPTR_0001s06100 (11)	scaffold_1:4739921-4740432(-) (11)	NA	NA	NA	AT3G13650.1	Disease resistance-responsive (dirigent-like protein) family protein 	LOC_Os11g07830.1	"dirigent, putative, expressed"	Medtr3g040700.1	Plant disease resistance response protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.424.1.A1_a_at	A	A1TS	POPTR_0009s12720	POPTR_0009s12720 (11)	scaffold_9:10331771-10332631(+) (11)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT4G08350.1	global transcription factor group A2 	LOC_Os02g53230.1	"transcription elongation factor SPT5 homolog 1, putative, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.424.2.A1_s_at	A	A2TS	POPTR_0009s12720	POPTR_0009s12720 (11)//POPTR_0004s16940 (9)	scaffold_4:17318185-17320913(+) (9)//scaffold_9:10329526-10332567(+) (11)	NA	Q9STN3	Putative transcription elongation factor SPT5 homolog 1	AT4G08350.1	global transcription factor group A2 	LOC_Os02g53230.1	"transcription elongation factor SPT5 homolog 1, putative, expressed"	Medtr3g125320.1	NusG 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4240.1.A1_at	A	A1MS	POPTR_0006s07990	POPTR_0006s07990 (10)	scaffold_6:5846421-5846818(+) (11)	NA	Q605C1	30S ribosomal protein S17	AT1G49400.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os08g27090.1	"ribosomal protein S17, putative, expressed"	Medtr6g005050.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4240.2.A1_a_at	A	A2TS	POPTR_0018s14700	POPTR_0018s14700 (11)//POPTR_0006s07990 (10)	scaffold_18:14817814-14818177(+) (11)//scaffold_6:5845952-5846305(+) (11)	NA	A7HM43	30S ribosomal protein S17	AT1G49400.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os08g27090.1	"ribosomal protein S17, putative, expressed"	Medtr6g005050.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4240.3.A1_at	A	A1TS	POPTR_0018s14700	POPTR_0018s14700 (11)	scaffold_18:14818211-14818829(+) (11)	NA	A7HM43	30S ribosomal protein S17	AT1G49400.1	"Nucleic acid-binding, OB-fold-like protein "	LOC_Os08g27090.1	"ribosomal protein S17, putative, expressed"	Medtr6g005050.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4243.1.S1_at	A	A1TS	POPTR_0006s26820	POPTR_0006s26820 (11)	scaffold_6:24908084-24910131(+) (11)	NA	O22969	Uncharacterized protein At2g34160	AT2G34160.1	Alba DNA/RNA-binding protein 	LOC_Os06g40040.1	"protein of unknown function domain containing protein, expressed"	Medtr2g126150.1	"Alba, DNA/RNA-binding protein "	NA	GO:0003676|nucleic acid binding	NA
Ptp.4244.1.S1_s_at	A	A1TS	POPTR_0005s11690	POPTR_0005s11690 (11)	scaffold_5:8518626-8519126(-) (11)	NA	Q3TSG4	Probable alpha-ketoglutarate-dependent dioxygenase ABH5	AT2G17970.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 	LOC_Os06g04660.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g007190.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4245.1.S1_at	A	A1TS	POPTR_0004s20930	POPTR_0004s20930 (11)	scaffold_4:20287263-20287928(+) (11)	NA	Q9DE26	RuvB-like 1	AT5G22330.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os01g62040.1	"ruvB-like, putative, expressed"	Medtr3g140320.1	"AAA ATPase; TIP49, C-terminal "	NA	GO:0003678|DNA helicase activity||GO:0005524|ATP binding	NA
Ptp.4246.1.S1_s_at	A	A1TS	POPTR_0003s15280	POPTR_0003s15280 (10)	scaffold_3:15121450-15127048(+) (10)	NA	NA	NA	NA	NA	NA	NA	NA	NA	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	GO:0005634|nucleus
Ptp.4250.1.S1_at	A	A1TS	POPTR_0011s15980	POPTR_0011s15980 (11)	scaffold_11:17973204-17973837(+) (11)	NA	A4FV84	mRNA turnover protein 4 homolog	AT1G25260.1	Ribosomal protein L10 family protein 	LOC_Os11g01420.1	"ribosomal protein L10, putative, expressed"	Medtr2g007880.1	Ribosomal protein L10 	GO:0042254|ribosome biogenesis	NA	GO:0005622|intracellular
Ptp.4255.1.S1_at	A	A1TS	POPTR_0006s11580	POPTR_0006s11580 (11)	scaffold_6:8785516-8786075(-) (11)	NA	Q0DCT8	Protein kinase G11A	AT3G52890.2	KCBP-interacting protein kinase 	LOC_Os12g29580.1	"AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed"	Medtr7g126960.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004672|protein kinase activity||GO:0005524|ATP binding	NA
Ptp.4256.1.S1_at	A	A1TS	POPTR_0002s26400	POPTR_0002s26400 (11)	scaffold_2:23374491-23374866(-) (11)	POPTR_0014s17920 (7)	Q8L5U0	COP9 signalosome complex subunit 4	AT5G42970.1	Proteasome component (PCI) domain protein 	LOC_Os03g10120.2	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4256.1.S1_s_at	A	A1TS	POPTR_0002s26400	POPTR_0002s26400 (11)	scaffold_2:23373010-23374484(-) (11)	POPTR_0014s17920 (6)	Q8L5U0	COP9 signalosome complex subunit 4	AT5G42970.1	Proteasome component (PCI) domain protein 	LOC_Os03g10120.2	"proteasome subunit, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4257.1.A1_at	A	A1TS	POPTR_0019s03540	POPTR_0019s03540 (11)	scaffold_19:3630337-3630385(+) (11)	NA	NA	NA	AT5G28490.1	Protein of unknown function (DUF640) 	LOC_Os06g46030.1	"DUF640 domain containing protein, putative, expressed"	Medtr5g080780.1	Protein of unknown function DUF640 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4258.1.A1_at	A	A1TS	POPTR_0010s23570	POPTR_0010s23570 (11)	scaffold_10:20105758-20108409(-) (11)	NA	Q93Z04	Probable pectate lyase 13	AT5G04310.1	Pectin lyase-like superfamily protein 	LOC_Os10g31910.1	"pectate lyase precursor, putative, expressed"	Medtr6g022510.1	"Virulence factor, pectin lyase fold "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.426.1.A1_s_at	A	A1TS	POPTR_0001s37580	POPTR_0001s37580 (11)	scaffold_1:36548842-36549139(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4262.1.S1_at	A	A1TS	POPTR_0017s13360	POPTR_0017s13360 (11)	scaffold_17:13541072-13541796(-) (11)	NA	Q9SRU7	"Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 2"	AT3G02320.1	"N2,N2-dimethylguanosine tRNA methyltransferase "	LOC_Os03g57280.1	"N-dimethylguanosine tRNA methyltransferase, putative, expressed"	NA	NA	GO:0008033|tRNA processing||GO:0044260|cellular macromolecule metabolic process	GO:0004809|tRNA (guanine-N2-)-methyltransferase activity||GO:0003723|RNA binding	NA
Ptp.4263.1.A1_at	A	A1TS	POPTR_0001s09300	POPTR_0001s09300 (11)	scaffold_1:7098021-7098465(-) (11)	NA	Q9S7C9	Putative DNA-binding protein ESCAROLA	AT1G63470.1	AT hook motif DNA-binding family protein 	LOC_Os02g57820.1	"AT hook motif domain containing protein, expressed"	Medtr5g010440.1	"HMG-I and HMG-Y, DNA-binding "	NA	GO:0003677|DNA binding	NA
Ptp.4265.1.A1_at	A	A1TS	POPTR_0014s16150	POPTR_0014s16150 (11)	scaffold_14:12214343-12214540(-) (11)	NA	Q9BYX2	TBC1 domain family member 2A	AT3G07890.2	Ypt/Rab-GAP domain of gyp1p superfamily protein 	LOC_Os08g25010.1	"TBC domain containing protein, expressed"	Medtr5g105820.1	RabGAP/TBC 	GO:0023051|regulation of signaling process||GO:0023046|signaling process||GO:0023060|signal transmission||GO:0032313|regulation of Rab GTPase activity||GO:0023052|signaling	GO:0005097|Rab GTPase activator activity	GO:0005622|intracellular
Ptp.4267.1.S1_at	A	A1TS	POPTR_0001s19180	POPTR_0001s19180 (11)	scaffold_1:16622953-16623030(-) (11)	NA	P27061	Acid phosphatase 1	AT4G25150.1	"HAD superfamily, subfamily IIIB acid phosphatase  "	LOC_Os06g04790.1	"HAD superfamily phosphatase, putative, expressed"	Medtr8g016170.1	Plant acid phosphatase 	NA	GO:0003993|acid phosphatase activity	NA
Ptp.427.1.S1_at	A	A1TS	POPTR_0008s04090	POPTR_0008s04090 (11)	scaffold_8:2278826-2279919(-) (11)	NA	Q9LJZ5	Ubiquitin-conjugating enzyme E2 19	AT3G20060.1	ubiquitin-conjugating enzyme19 	LOC_Os01g16650.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr1g121450.1	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4270.1.S1_s_at	A	A1TS	POPTR_0014s00340	POPTR_0014s00340 (11)	scaffold_14:145172-145839(+) (11)	NA	Q6R2K1	Protein STRUBBELIG-RECEPTOR FAMILY 5	AT1G78980.1	STRUBBELIG-receptor family 5 	LOC_Os10g25090.1	"STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed"	Medtr4g163300.1	Tyrosine protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4271.1.S1_at	A	A1TS	POPTR_0003s22130	POPTR_0003s22130 (10)	scaffold_3:20054510-20054543(-) (10)	NA	Q9SD53	UPF0481 protein At3g47200	AT4G31980.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). "	LOC_Os01g21650.1	"plant protein of unknown function domain containing protein, expressed"	Medtr6g010460.1	Plant protein of unknown function 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4272.1.S1_at	A	A1TS	POPTR_0007s13250	POPTR_0007s13250 (10)	scaffold_7:13364992-13365324(-) (10)	NA	Q9SBK6	Jasmonate O-methyltransferase	AT4G36470.1	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 	LOC_Os01g50480.1	"SAM dependent carboxyl methyltransferase, putative"	Medtr5g048660.1	SAM dependent carboxyl methyltransferase 	NA	GO:0008168|methyltransferase activity	NA
Ptp.4273.1.A1_at	A	A1TS	POPTR_0006s14580	POPTR_0006s14580 (11)	scaffold_6:11917962-11918343(+) (11)	NA	NA	NA	AT2G28230.1	TATA-binding related factor (TRF) of subunit 20 of Mediator complex 	LOC_Os09g27140.2	expressed protein	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006357|regulation of transcription from RNA polymerase II promoter	GO:0016455|RNA polymerase II transcription mediator activity	NA
Ptp.4275.2.S1_at	A	A1TS	POPTR_0011s11640	POPTR_0011s11640 (11)	scaffold_11:14441296-14441355(+) (11)	NA	Q9FN32	Protein yippee-like At5g53940	AT5G53940.1	Yippee family putative zinc-binding protein 	LOC_Os03g49150.1	"yippee zinc-binding protein, putative, expressed"	Medtr3g025460.1	Yippee-like protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4278.1.S1_at	A	A1TS	POPTR_0011s16510	POPTR_0011s16510 (10)	scaffold_11:18387070-18387327(-) (10)	NA	NA	NA	AT4G20880.1	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) 	NA	NA	AC147501_24.1	"Putative transcription factor, AC147501.9 100411-98848 E EGN_Mt090430 200"	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.428.1.A1_at	A	A1TS	POPTR_0006s01600	POPTR_0006s01600 (11)	scaffold_6:971861-972520(+) (11)	NA	P54928	Inositol monophosphatase 3	AT3G02870.1	Inositol monophosphatase family protein 	LOC_Os03g39000.2	"inositol-1-monophosphatase, putative, expressed"	Medtr2g030140.1	Inositol monophosphatase 	NA	GO:0004437|inositol or phosphatidylinositol phosphatase activity	NA
Ptp.4282.1.S1_s_at	A	A2TS	POPTR_0001s32200	POPTR_0001s32200 (11)//POPTR_0017s08190 (11)	scaffold_1:30618060-30618694(+) (11)//scaffold_17:6653934-6654517(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT4G13640.1	Homeodomain-like superfamily protein 	LOC_Os09g12750.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4282.3.S1_s_at	A	A1TS	POPTR_0001s32200	POPTR_0001s32200 (11)	scaffold_1:30619417-30619733(+) (11)	NA	Q9SAK5	Myb family transcription factor APL	AT4G13640.1	Homeodomain-like superfamily protein 	LOC_Os09g12750.1	"Myb-like DNA-binding domain containing protein, putative, expressed"	Medtr2g033400.1	"Myb, DNA-binding; Homeodomain-related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4284.1.S1_s_at	A	A1TS	POPTR_0019s10590	POPTR_0019s10590 (11)	scaffold_19:12135586-12135759(-) (11)	NA	P54120	Protein AIG1	AT1G33970.5	P-loop containing nucleoside triphosphate hydrolases superfamily protein 	LOC_Os02g35130.2	"AIG1, putative, expressed"	Medtr4g033020.1	AIG1 	NA	GO:0005525|GTP binding	GO:0005622|intracellular
Ptp.4287.1.S1_s_at	A	A1TS	POPTR_0006s25390	POPTR_0006s25390 (11)	scaffold_6:23787115-23787862(-) (11)	NA	Q39123	Homeobox-leucine zipper protein ATHB-8	AT4G32880.1	homeobox gene 8 	LOC_Os03g43930.2	"START domain containing protein, expressed"	Medtr3g130470.1	Lipid-binding START; Homeodomain-related 	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0043565|sequence-specific DNA binding||GO:0003700|transcription factor activity||GO:0046983|protein dimerization activity	NA
Ptp.429.1.A1_s_at	A	A1TS	POPTR_0008s01320	POPTR_0008s01320 (11)	scaffold_8:642915-642966(+) (11)	NA	Q9CAF5	"ABC transporter I family member 6, chloroplastic"	AT3G10670.1	non-intrinsic ABC protein 7 	LOC_Os03g21490.2	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g161030.1	FeS assembly ATPase SufC 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.4290.1.S1_at	A	A1TS	POPTR_0010s11850	POPTR_0010s11850 (11)	scaffold_10:12004978-12005018(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4290.1.S1_s_at	A	A1TS	POPTR_0010s11850	POPTR_0010s11850 (11)	scaffold_10:12005082-12005154(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4290.1.S1_x_at	A	A1TS	POPTR_0010s11850	POPTR_0010s11850 (11)	scaffold_10:12004969-12005125(+) (11)	NA	Q9LVI4	Protein TIFY 6B	AT3G17860.1	jasmonate-zim-domain protein 3 	LOC_Os09g23660.1	"ZIM motif family protein, expressed"	AC233676_12.3	ZIM AC233676.2 46780-50846 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4291.1.S1_at	A	A1TS	POPTR_0017s10860	POPTR_0017s10860 (9)	scaffold_17:10398675-10398882(-) (9)	NA	Q9FL07	RING-H2 finger protein ATL46	AT5G40250.1	RING/U-box superfamily protein 	LOC_Os02g50930.1	"RING-H2 finger protein, putative, expressed"	Medtr5g035920.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4294.1.S1_at	A	A1TS	POPTR_0019s07820	POPTR_0019s07820 (11)	scaffold_19:9044008-9047308(-) (11)	NA	Q9M9M9	Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	AT3G03100.1	"NADH:ubiquinone oxidoreductase, 17.2kDa subunit "	LOC_Os10g42840.1	"NADH dehydrogenase 1 alpha subcomplex subunit 12, putative, expressed"	NA	NA	NA	GO:0008137|NADH dehydrogenase (ubiquinone) activity||GO:0009055|electron carrier activity	GO:0016020|membrane
Ptp.4295.1.S1_at	A	A1TS	POPTR_0002s25620	POPTR_0002s25620 (11)	scaffold_2:22713210-22713264(+) (11)	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4295.2.S1_s_at	A	A1TS	POPTR_0002s25620	POPTR_0002s25620 (10)	scaffold_2:22712162-22712299(+) (10)	NA	A2XAZ3	Alcohol dehydrogenase class-3	AT5G43940.1	GroES-like zinc-binding dehydrogenase family protein 	LOC_Os02g57040.1	"dehydrogenase, putative, expressed"	Medtr7g117490.1	"Alcohol dehydrogenase superfamily, zinc-containing; ; "	GO:0055114|oxidation reduction	GO:0008270|zinc ion binding||GO:0016491|oxidoreductase activity	NA
Ptp.4296.1.S1_at	A	A1MS	POPTR_0001s35190	POPTR_0001s35190 (10)	scaffold_1:33482320-33482507(-) (10)	NA	Q9FUZ2	"Peptide deformylase 1B, chloroplastic"	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
Ptp.4296.2.S1_at	A	A1TS	POPTR_0001s35190	POPTR_0001s35190 (11)	scaffold_1:33482302-33485920(-) (11)	NA	Q9FUZ2	"Peptide deformylase 1B, chloroplastic"	AT5G14660.2	peptide deformylase 1B 	LOC_Os01g45070.2	"peptide deformylase, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0005506|iron ion binding||GO:0042586|peptide deformylase activity	NA
Ptp.43.1.S1_at	A	A1TS	POPTR_0016s01010	POPTR_0016s01010 (11)	scaffold_16:402026-404284(-) (11)	NA	B9IH36	UPF0497 membrane protein 5	AT2G35760.1	Uncharacterised protein family (UPF0497) 	LOC_Os03g10030.1	"membrane associated DUF588 domain containing protein, putative, expressed"	Medtr2g030530.1	Protein of unknown function DUF588 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.430.1.A1_at	A	A1TS	POPTR_0001s25440	POPTR_0001s25440 (11)	scaffold_1:24557705-24557854(+) (11)//scaffold_1:24568572-24568723(+) (11)//scaffold_2100:3631-3782(-) (11)	NA	NA	NA	AT5G01120.1	Protein of unknown function (DUF674) 	LOC_Os04g50800.1	expressed protein	Medtr2g085240.1	Protein of unknown function DUF674 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4300.1.S1_s_at	A	A1TS	POPTR_0006s25030	POPTR_0006s25030 (11)	scaffold_6:23476081-23476476(-) (11)	NA	O82804	Protein EARLY FLOWERING 3	AT2G25930.1	hydroxyproline-rich glycoprotein family protein 	LOC_Os01g38530.1	"ELF3 protein, putative, expressed"	Medtr3g140450.1	"early flowering 3, related "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4301.1.S1_s_at	A	A1TS	POPTR_0005s08350	POPTR_0005s08350 (11)	scaffold_5:5755308-5755736(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4301.2.S1_at	A	A1MS	POPTR_0005s08350	POPTR_0005s08350 (9)	scaffold_5:5757379-5757663(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4302.1.S1_s_at	A	A1TS	POPTR_0015s06880	POPTR_0015s06880 (11)	scaffold_15:7906517-7906569(-) (11)	NA	Q9SD84	"Glucan endo-1,3-beta-glucosidase-like protein 3"	AT1G18650.1	plasmodesmata callose-binding protein 3 	LOC_Os03g54910.1	"X8 domain containing protein, expressed"	Medtr5g047240.1	X8 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4305.1.S1_s_at	A	A1TS	POPTR_0017s13090	POPTR_0017s13090 (11)	scaffold_17:13263021-13263920(+) (11)	NA	NA	NA	AT1G26355.1	SPIRAL1-like1 	LOC_Os11g41150.1	"nitrilase-associated protein, putative, expressed"	Medtr7g025650.1	"Peptidase, cysteine peptidase active site "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4306.1.S1_at	A	A1TS	POPTR_0012s01250	POPTR_0012s01250 (11)	scaffold_12:870264-870486(+) (11)	NA	P35133	Ubiquitin-conjugating enzyme E2 10	AT5G53300.4	ubiquitin-conjugating enzyme 10 	LOC_Os02g16040.1	"ubiquitin-conjugating enzyme, putative, expressed"	Medtr7g143610.2	"Ubiquitin-conjugating enzyme, E2 "	GO:0044260|cellular macromolecule metabolic process||GO:0051246|regulation of protein metabolic process||GO:0043687|post-translational protein modification	GO:0019787|small conjugating protein ligase activity	NA
Ptp.4308.1.S1_at	A	A1TA	POPTR_0011s16160	POPTR_0011s16160 (11)	scaffold_11:18088755-18089269(-) (11)	NA	Q9SVG4	Reticuline oxidase-like protein	AT1G30700.1	FAD-binding Berberine family protein 	LOC_Os06g35550.1	"retrotransposon protein, putative, Ty1-copia subclass, expressed"	AC147501_9.1	"FAD linked oxidase, N-terminal; Berberine/berberine-like AC147501.9 35988-34289 E EGN_Mt090430 200"	NA	GO:0050660|FAD binding||GO:0016491|oxidoreductase activity	NA
Ptp.431.1.A1_at	A	A1TS	POPTR_0009s09260	POPTR_0009s09260 (11)	scaffold_9:8273216-8273686(+) (11)	NA	Q9FMF5	Root phototropism protein 3	AT2G14820.1	Phototropic-responsive NPH3 family protein 	LOC_Os12g39380.1	"BTBN24 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed"	Medtr1g135040.1	BTB/POZ; NPH3; 	GO:0009416|response to light stimulus	GO:0004871|signal transducer activity	NA
Ptp.4311.1.S1_at	A	A1TS	POPTR_0005s02760	POPTR_0005s02760 (11)	scaffold_5:1767948-1770082(-) (11)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4312.1.S1_s_at	A	A1TS	POPTR_0001s07890	POPTR_0001s07890 (11)	scaffold_1:5981321-5982048(+) (11)	NA	P42798	40S ribosomal protein S15a-1	AT5G59850.1	Ribosomal protein S8 family protein 	LOC_Os02g27760.1	"40S ribosomal protein S15a, putative, expressed"	Medtr4g160590.1	Ribosomal protein S8 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4315.1.S1_at	A	A1TS	POPTR_0006s00640	POPTR_0006s00640 (10)	scaffold_6:336594-337056(-) (10)	NA	Q32L00	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3	AT2G22260.1	"oxidoreductase, 2OG-Fe(II) oxygenase family protein "	LOC_Os06g17830.1	"oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed"	Medtr2g032760.1	2OG-Fe(II) oxygenase 	NA	GO:0016491|oxidoreductase activity	NA
Ptp.4316.1.S1_a_at	A	A1TS	POPTR_0018s12330	POPTR_0018s12330 (11)	scaffold_18:12823670-12823800(-) (11)	NA	P42733	40S ribosomal protein S11-3	AT5G23740.1	ribosomal protein S11-beta 	LOC_Os08g10608.1	"ribosomal protein S17, putative, expressed"	Medtr8g092770.1	Ribosomal protein S17 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4318.1.S1_s_at	A	A1TS	POPTR_0001s20390	POPTR_0001s20390 (11)	scaffold_1:18306343-18309095(+) (11)	NA	Q84LG4	Coatomer subunit zeta-2	AT4G08520.1	SNARE-like superfamily protein 	LOC_Os02g21250.2	"clathrin adaptor complex small chain domain containing protein, expressed"	Medtr8g020930.1	Longin-like 	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005515|protein binding	GO:0030117|membrane coat
Ptp.4320.1.S1_at	A	A1TS	POPTR_0001s45000	POPTR_0001s45000 (11)	scaffold_1:45318020-45318759(+) (11)	NA	O60176	Uncharacterized RNA-binding protein C23E6.01c	AT4G27000.1	RNA-binding (RRM/RBD/RNP motifs) family protein 	LOC_Os03g37270.1	"RNA recognition motif containing protein, putative, expressed"	Medtr8g146650.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4321.1.S1_at	A	A1TS	POPTR_0006s06730	POPTR_0006s06730 (9)	scaffold_6:4869372-4869886(+) (9)	NA	A1L272	Equilibrative nucleoside transporter 4	AT1G02630.1	Nucleoside transporter family protein 	LOC_Os08g10450.1	"nucleoside transporter, putative, expressed"	Medtr8g120640.1	Delayed-early response protein/equilibrative nucleoside transporter 	GO:0006810|transport	GO:0005337|nucleoside transmembrane transporter activity	GO:0016020|membrane
Ptp.4322.1.S1_at	A	A1TS	POPTR_0009s02830	POPTR_0009s02830 (10)	scaffold_9:3584176-3584524(+) (10)	NA	Q91YT2	RING finger protein 185	AT2G44410.1	RING/U-box superfamily protein 	LOC_Os01g61420.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr4g031580.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4325.1.S1_s_at	A	A1TS	POPTR_0003s03400	POPTR_0003s03400 (11)	scaffold_3:3783752-3783788(-) (11)	NA	NA	NA	AT4G17670.1	Protein of unknown function (DUF581) 	LOC_Os04g49660.1	"DUF581 domain containing protein, expressed"	Medtr5g013920.1	Protein of unknown function DUF581 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4327.1.S1_s_at	A	A1TS	POPTR_0006s14170	POPTR_0006s14170 (11)	scaffold_6:11499775-11500214(-) (11)	NA	A7PZL3	Probable polygalacturonase	AT3G42950.1	Pectin lyase-like superfamily protein 	LOC_Os09g26800.1	"polygalacturonase, putative, expressed"	Medtr2g050070.1	"Glycoside hydrolase, family 28 "	GO:0005975|carbohydrate metabolic process	GO:0004650|polygalacturonase activity	NA
Ptp.4329.1.S1_s_at	A	A1TS	POPTR_0011s16680	POPTR_0011s16680 (11)	scaffold_11:18472305-18473244(+) (11)	NA	NA	NA	AT1G56200.2	embryo defective 1303 	NA	NA	Medtr3g079930.1	"EMB1303, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.433.1.A1_at	A	A1TS	POPTR_0001s03060	POPTR_0001s03060 (10)	scaffold_1:2412512-2413288(-) (10)	NA	Q9M9S4	Probable LRR receptor-like serine/threonine-protein kinase At1g14390	AT1G14390.1	Leucine-rich repeat protein kinase family protein 	LOC_Os06g38970.1	expressed protein	Medtr5g039640.1	Protein kinase 	NA	GO:0005515|protein binding	NA
Ptp.4330.1.S1_a_at	A	A1TS	POPTR_0012s13060	POPTR_0012s13060 (11)	scaffold_12:13361486-13362329(+) (11)	NA	Q9M352	60S ribosomal protein L36-2	AT3G53740.4	Ribosomal protein L36e family protein 	LOC_Os05g38520.4	"60S ribosomal protein L36-2, putative, expressed"	Medtr1g126960.2	Ribosomal protein L36E 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4331.1.S1_at	A	A1TS	POPTR_0012s07830	POPTR_0012s07830 (11)	scaffold_12:8777368-8777667(-) (11)	NA	Q9SIP7	40S ribosomal protein S3-1	AT2G31610.1	Ribosomal protein S3 family protein 	LOC_Os07g41750.1	"40S ribosomal protein S3-1, putative, expressed"	Medtr1g069030.1	Eukaryotic/archaeal ribosomal protein S3 	NA	GO:0003723|RNA binding	NA
Ptp.4333.1.S1_s_at	A	A1TS	POPTR_0009s09220	POPTR_0009s09220 (11)	scaffold_9:8229843-8232335(-) (11)	NA	Q9N4Y9	Zinc finger protein-like 1 homolog	AT2G14835.2	RING/U-box superfamily protein 	LOC_Os10g20600.1	"zinc finger, C3HC4 type domain containing protein, expressed"	Medtr1g135130.1	"Zinc finger, RING-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4334.1.S1_s_at	A	A1TS	POPTR_0001s05070	POPTR_0001s05070 (11)	scaffold_1:3899122-3899464(-) (11)	NA	Q7F8R0	Zinc finger CCCH domain-containing protein 14	AT3G12130.1	KH domain-containing protein / zinc finger (CCCH type) family protein 	LOC_Os02g10080.1	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g111840.1	"Zinc finger, CCCH-type; KH, type 1 "	NA	GO:0003723|RNA binding||GO:0008270|zinc ion binding	NA
Ptp.4335.1.S1_at	A	A1TS	POPTR_0006s01040	POPTR_0006s01040 (11)	scaffold_6:595197-595407(+) (11)	NA	P52427	Proteasome subunit alpha type-4	AT3G22110.1	20S proteasome alpha subunit C1 	LOC_Os06g07140.1	"peptidase, T1 family, putative, expressed"	Medtr7g076140.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4336.1.S1_at	A	A1TS	POPTR_0016s07640	POPTR_0016s07640 (11)	scaffold_16:5481575-5482799(+) (11)	NA	Q5ASQ0	Peptidyl-prolyl cis-trans isomerase-like 1	AT2G36130.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g44520.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.4336.1.S1_x_at	A	A1TS	POPTR_0016s07640	POPTR_0016s07640 (11)	scaffold_16:5481575-5482885(+) (11)	NA	Q5ASQ0	Peptidyl-prolyl cis-trans isomerase-like 1	AT2G36130.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 	LOC_Os08g44520.3	"peptidyl-prolyl cis-trans isomerase, putative, expressed"	Medtr5g015600.1	"Peptidyl-prolyl cis-trans isomerase, cyclophilin type; U box "	NA	GO:0003755|peptidyl-prolyl cis-trans isomerase activity	NA
Ptp.4338.1.S1_at	A	A1TS	POPTR_0010s09810	POPTR_0010s09810 (11)	scaffold_10:10429665-10429708(-) (11)	NA	O16102	Chromodomain-helicase-DNA-binding protein 3	AT4G14920.1	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein 	LOC_Os03g53630.1	"PHD finger family protein, putative, expressed"	Medtr1g086280.1	"HMG-I and HMG-Y, DNA-binding; Zinc finger, FYVE/PHD-type "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4341.1.S1_at	A	A1TS	POPTR_0009s02400	POPTR_0009s02400 (11)	scaffold_9:3153629-3155572(+) (11)	NA	Q94AG2	Somatic embryogenesis receptor kinase 1	AT5G21090.1	Leucine-rich repeat (LRR) family protein 	LOC_Os01g59440.1	"BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed"	Medtr5g094910.1	"Leucine-rich repeat, N-terminal "	NA	GO:0005515|protein binding	NA
Ptp.4342.1.S1_at	A	A1TS	POPTR_0002s24310	POPTR_0002s24310 (11)	scaffold_2:21702940-21703139(-) (11)	NA	Q6ICB0	PPPDE peptidase domain-containing protein 2	AT3G07090.1	PPPDE putative thiol peptidase family protein 	LOC_Os02g56900.1	"thioredoxin family protein, putative, expressed"	Medtr7g064580.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4342.1.S1_x_at	A	A1TS	POPTR_0002s24310	POPTR_0002s24310 (11)	scaffold_2:21702655-21703138(-) (11)	NA	Q6ICB0	PPPDE peptidase domain-containing protein 2	AT3G07090.1	PPPDE putative thiol peptidase family protein 	LOC_Os02g56900.1	"thioredoxin family protein, putative, expressed"	Medtr7g064580.1	"Protein of unknown function DUF862, eukaryotic "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4343.1.S1_at	A	A1TS	POPTR_0017s02410	POPTR_0017s02410 (10)	scaffold_17:1747507-1748107(+) (10)	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os04g53620.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4343.1.S1_s_at	A	A1TS	POPTR_0017s02410	POPTR_0017s02410 (11)	scaffold_17:1748106-1748241(+) (11)	NA	Q3E7T8	Polyubiquitin 14	AT4G02890.4	Ubiquitin family protein 	LOC_Os04g53620.1	"ubiquitin family protein, putative, expressed"	Medtr8g021190.1	Ubiquitin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4344.1.S1_at	A	A1TS	POPTR_0014s17940	POPTR_0014s17940 (11)	scaffold_14:14494087-14495312(-) (11)	NA	NA	NA	AT5G42960.1	"unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G45170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os03g63860.1	"DANA2, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4345.1.S1_at	A	A1TS	POPTR_0016s02600	POPTR_0016s02600 (10)	scaffold_16:1281514-1282931(-) (10)	NA	Q93YF5	"Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1"	AT1G73100.1	SU(VAR)3-9 homolog 3 	LOC_Os05g41172.2	"histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed"	Medtr7g105180.1	SRA-YDG; SET-related region; Pre-SET; Histone H3-K9 methyltransferase 	GO:0016568|chromatin modification	GO:0018024|histone-lysine N-methyltransferase activity||GO:0008270|zinc ion binding	GO:0005634|nucleus
Ptp.4346.1.S1_at	A	A1TS	POPTR_0008s05310	POPTR_0008s05310 (11)	scaffold_8:3086494-3088161(+) (11)	NA	NA	NA	AT5G59613.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). 	LOC_Os03g40920.1	expressed protein	Medtr2g114440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4346.1.S1_x_at	A	A1TS	POPTR_0008s05310	POPTR_0008s05310 (11)	scaffold_8:3086494-3088161(+) (11)	NA	NA	NA	AT5G59613.2	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). 	LOC_Os03g40920.1	expressed protein	Medtr2g114440.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4348.1.A1_at	A	A1TS	POPTR_0013s04050	POPTR_0013s04050 (9)	scaffold_13:2680463-2680865(-) (9)	NA	NA	NA	AT1G64260.1	MuDR family transposase 	LOC_Os12g40530.1	"transposon protein, putative, unclassified, expressed"	Medtr1g094000.1	"Plant MuDR transposase; Zinc finger, PMZ-type "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.435.1.A1_a_at	A	A1TS	POPTR_0002s24100	POPTR_0002s24100 (11)	scaffold_2:21544475-21544627(+) (11)	NA	Q9ASS4	Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380	AT5G48380.1	BAK1-interacting receptor-like kinase 1 	LOC_Os11g14420.1	"inactive receptor kinase At1g27190 precursor, putative, expressed"	Medtr7g092340.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding||GO:0005515|protein binding	NA
Ptp.4350.1.S1_at	A	A1TS	POPTR_0008s01000	POPTR_0008s01000 (11)	scaffold_8:468361-468599(-) (11)	NA	O04130	"D-3-phosphoglycerate dehydrogenase, chloroplastic"	AT1G17745.1	D-3-phosphoglycerate dehydrogenase 	LOC_Os06g44460.1	"D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed"	Medtr4g023220.1	Amino acid-binding ACT 	GO:0008152|metabolic process	"GO:0016616|""oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor""||GO:0051287|NAD or NADH binding||GO:0016597|amino acid binding"	NA
Ptp.4358.1.S1_at	A	A1TS	POPTR_0009s10160	POPTR_0009s10160 (9)	scaffold_9:8800457-8800945(-) (9)	NA	NA	NA	AT5G67210.1	Protein of unknown function (DUF579) 	LOC_Os06g47310.1	"plant-specific domain TIGR01627 family protein, expressed"	Medtr4g130370.1	Uncharacterized plant-specific domain 01627 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4361.1.S1_s_at	A	A1TS	POPTR_0008s09680	POPTR_0008s09680 (11)	scaffold_8:5987142-5987373(+) (11)	NA	Q9LMX8	Probable 6-phosphogluconolactonase 1	AT1G13700.1	6-phosphogluconolactonase 1 	LOC_Os07g41280.3	"6-phosphogluconolactonase, putative, expressed"	Medtr5g047620.1	6-phosphogluconolactonase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4362.1.S1_at	A	A1TS	POPTR_0017s07940	POPTR_0017s07940 (10)	scaffold_17:6322450-6323035(-) (10)	POPTR_0017s07920 (7)//POPTR_0017s07880 (7)//POPTR_0017s07900 (6)	Q9SK82	Cytokinin-O-glucosyltransferase 2	AT1G22360.1	UDP-glucosyl transferase 85A2 	LOC_Os02g51910.1	"cytokinin-O-glucosyltransferase 2, putative, expressed"	Medtr5g073260.1	UDP-glucuronosyl/UDP-glucosyltransferase 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4363.1.S1_at	A	A1TS	POPTR_0010s13460	POPTR_0010s13460 (9)	scaffold_10:13283903-13284437(+) (9)	NA	NA	NA	AT1G13380.1	Protein of unknown function (DUF1218) 	LOC_Os09g10910.3	"fiber protein Fb34, putative, expressed"	Medtr5g066790.1	Protein of unknown function DUF1218 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4364.1.S1_at	A	A1TS	POPTR_0003s19250	POPTR_0003s19250 (10)	scaffold_3:18038597-18039051(-) (10)	NA	P52839	Flavonol sulfotransferase-like	AT5G07010.1	sulfotransferase 2A 	LOC_Os02g45890.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
Ptp.4364.1.S1_s_at	A	A2TS	POPTR_0003s19260	POPTR_0003s19260 (11)//POPTR_0003s19250 (9)	scaffold_3:18038568-18042919(-) (11)//scaffold_3:18042452-18042841(-) (9)	NA	P52839	Flavonol sulfotransferase-like	AT5G07010.1	sulfotransferase 2A 	LOC_Os04g44460.1	"sulfotransferase domain containing protein, expressed"	Medtr3g005080.1	Sulfotransferase 	NA	GO:0008146|sulfotransferase activity	NA
Ptp.4365.1.S1_at	A	A1TS	POPTR_0011s02520	POPTR_0011s02520 (11)	scaffold_11:2419565-2424756(-) (11)	NA	O74545	Putative hydrolase C777.06c	AT1G30300.1	Metallo-hydrolase/oxidoreductase superfamily protein 	LOC_Os12g42100.1	"phosphonate metabolism protein-related, putative"	Medtr2g022220.1	"phosphonate metabolism protein-related, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4366.1.S1_at	A	A1TS	POPTR_0001s05970	POPTR_0001s05970 (9)	scaffold_1:4684410-4684522(-) (9)	NA	NA	NA	NA	NA	NA	NA	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4367.1.S1_s_at	A	A1TS	POPTR_0011s05250	POPTR_0011s05250 (11)	scaffold_11:5138513-5138900(+) (11)	NA	Q05758	"Ketol-acid reductoisomerase, chloroplastic"	AT3G58610.3	ketol-acid reductoisomerase 	LOC_Os05g49800.1	"ketol-acid reductoisomerase, chloroplast precursor, putative, expressed"	Medtr4g109610.1	Acetohydroxy acid isomeroreductase; ; 	GO:0044281|small molecule metabolic process||GO:0044283|small molecule biosynthetic process||GO:0055114|oxidation reduction||GO:0009082|branched chain family amino acid biosynthetic process	GO:0004455|ketol-acid reductoisomerase activity	NA
Ptp.4369.1.S1_s_at	A	A1TS	POPTR_0008s04170	POPTR_0008s04170 (11)	scaffold_8:2336432-2336549(-) (11)	NA	NA	NA	AT4G25030.2	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45410.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). 	LOC_Os10g43060.1	expressed protein	Medtr1g121550.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4370.1.S1_s_at	A	A1TS	POPTR_0010s19420	POPTR_0010s19420 (11)	scaffold_10:17328111-17328166(-) (11)	NA	Q00610	Clathrin heavy chain 1	AT3G11130.1	"Clathrin, heavy chain "	LOC_Os12g01390.1	"clathrin heavy chain, putative, expressed"	Medtr5g090360.1	"Clathrin propeller, N-terminal; Tetratricopeptide-like helical "	GO:0006886|intracellular protein transport||GO:0016192|vesicle-mediated transport	GO:0005198|structural molecule activity||GO:0005515|protein binding	GO:0030130|clathrin coat of trans-Golgi network vesicle||GO:0030132|clathrin coat of coated pit
Ptp.4371.1.A1_at	A	A1TS	POPTR_0008s05970	POPTR_0008s05970 (10)	scaffold_8:3518286-3518461(-) (11)	NA	Q9C912	60S ribosomal protein L35a-3	AT1G74270.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4371.2.A1_s_at	A	A1TS	POPTR_0008s05970	POPTR_0008s05970 (11)	scaffold_8:3518494-3519788(-) (11)	NA	Q9C912	60S ribosomal protein L35a-3	AT1G74270.1	Ribosomal protein L35Ae family protein 	LOC_Os02g54470.2	"60S ribosomal protein L35a-3, putative, expressed"	Medtr5g088960.1	Ribosomal protein L35Ae 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4373.1.S1_at	A	A1TS	POPTR_0005s26740	POPTR_0005s26740 (11)	scaffold_5:24629374-24629705(-) (11)	NA	P00299	"Plastocyanin A, chloroplastic"	AT1G76100.1	plastocyanin 1 	LOC_Os06g01210.1	"plastocyanin, chloroplast precursor, putative, expressed"	Medtr3g157410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.4373.1.S1_x_at	A	A1TS	POPTR_0005s26740	POPTR_0005s26740 (11)	scaffold_5:24629369-24629705(-) (11)	NA	P00299	"Plastocyanin A, chloroplastic"	AT1G76100.1	plastocyanin 1 	LOC_Os06g01210.1	"plastocyanin, chloroplast precursor, putative, expressed"	Medtr3g157410.1	Blue (type 1) copper domain 	NA	GO:0005507|copper ion binding||GO:0009055|electron carrier activity	NA
Ptp.4375.1.S1_s_at	A	A1TS	POPTR_0003s10400	POPTR_0003s10400 (11)	scaffold_3:11396718-11397641(+) (11)	POPTR_0001s01130 (6)	P41091	Eukaryotic translation initiation factor 2 subunit 3	AT1G04170.1	eukaryotic translation initiation factor 2 gamma subunit 	LOC_Os12g41400.1	"eukaryotic translation initiation factor 2 subunit gamma, putative, expressed"	Medtr2g091680.1	Translation factor 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.4376.1.S1_at	A	A1TS	POPTR_0016s02850	POPTR_0016s02850 (10)	scaffold_16:1408440-1408979(-) (10)	NA	Q84LH3	Werner Syndrome-like exonuclease	AT4G13870.1	Werner syndrome-like exonuclease 	LOC_Os01g53580.1	"3-5 exonuclease domain-containing protein, putative"	Medtr2g085350.1	"Polynucleotidyl transferase, Ribonuclease H fold "	"GO:0006139|""nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"""	GO:0008408|3'-5' exonuclease activity||GO:0003676|nucleic acid binding	GO:0005622|intracellular
Ptp.4378.1.S1_s_at	A	A1TS	POPTR_0006s03090	POPTR_0006s03090 (11)	scaffold_6:1965764-1966298(+) (11)	NA	NA	NA	AT3G56880.1	VQ motif-containing protein 	LOC_Os01g17050.1	"VQ domain containing protein, putative, expressed"	Medtr7g105490.1	VQ 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4379.1.S1_s_at	A	A1TS	POPTR_0004s22600	POPTR_0004s22600 (11)	scaffold_4:21469761-21469939(-) (11)	NA	P25818	Aquaporin TIP1-1	AT2G36830.1	gamma tonoplast intrinsic protein 	LOC_Os03g05290.1	"aquaporin protein, putative, expressed"	Medtr4g079010.1	Aquaporin 	GO:0006810|transport	GO:0005215|transporter activity	GO:0016020|membrane
Ptp.438.1.S1_at	A	A1TS	POPTR_0001s35610	POPTR_0001s35610 (11)	scaffold_1:33954857-33955748(+) (11)	NA	NA	NA	AT3G27460.1	SGF29 tudor-like domain 	LOC_Os12g19350.1	expressed protein	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4380.1.S1_s_at	A	A1TS	POPTR_0003s04310	POPTR_0003s04310 (11)	scaffold_3:5023641-5023687(-) (11)	NA	NA	NA	AT3G13882.1	Ribosomal protein L34 	LOC_Os01g39010.1	"50S ribosomal protein, putative, expressed"	NA	NA	GO:0034645|cellular macromolecule biosynthetic process||GO:0006412|translation	GO:0003735|structural constituent of ribosome	GO:0005840|ribosome
Ptp.4381.1.S1_s_at	A	A1TS	POPTR_0003s06510	POPTR_0003s06510 (11)	scaffold_3:7993695-7993879(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4381.2.A1_a_at	A	A1TS	POPTR_0003s06510	POPTR_0003s06510 (11)	scaffold_3:7975257-7975342(-) (11)//scaffold_3:7994257-7994342(-) (11)	NA	Q9SD85	Flavonoid 3'-monooxygenase	AT5G07990.1	Cytochrome P450 superfamily protein 	LOC_Os09g26960.1	"cytochrome P450, putative, expressed"	Medtr8g025090.1	Cytochrome P450 	NA	GO:0004497|monooxygenase activity||GO:0020037|heme binding||GO:0009055|electron carrier activity	NA
Ptp.4382.1.S1_s_at	A	A1TS	POPTR_0010s23380	POPTR_0010s23380 (11)	scaffold_10:19983473-19984058(-) (11)	NA	Q93YU5	Probable exocyst complex component 4	AT3G10380.1	subunit of exocyst complex 8 	LOC_Os08g22864.1	"sec8 exocyst complex component specific domain containing protein, expressed"	Medtr5g017660.1	hypothetical protein 	GO:0006904|vesicle docking during exocytosis||GO:0015031|protein transport	NA	GO:0000145|exocyst
Ptp.4385.1.S1_a_at	A	A1TS	POPTR_0010s02690	POPTR_0010s02690 (11)	scaffold_10:3141139-3142982(+) (11)	NA	NA	NA	AT5G18800.2	Cox19-like CHCH family protein 	LOC_Os03g18420.1	"CHCH domain containing protein, expressed"	AC233070_20.1	CHCH AC233070.4 91111-95201 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4385.1.S1_at	A	A1TS	POPTR_0010s02690	POPTR_0010s02690 (11)	scaffold_10:3143027-3143100(+) (11)	NA	NA	NA	AT5G18800.2	Cox19-like CHCH family protein 	LOC_Os03g18420.1	"CHCH domain containing protein, expressed"	AC233070_20.1	CHCH AC233070.4 91111-95201 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4387.1.S1_at	A	A1TS	POPTR_0009s13940	POPTR_0009s13940 (11)	scaffold_9:11006489-11007315(-) (11)	NA	Q5RC80	RNA-binding protein 39	AT2G16940.1	"Splicing factor, CC1-like "	LOC_Os03g05830.1	"transposon protein, putative, CACTA, En/Spm sub-class, expressed"	Medtr4g141620.1	RNA-binding region RNP-1 (RNA recognition motif) 	NA	GO:0003676|nucleic acid binding	NA
Ptp.4389.1.A1_s_at	A	A1TS	POPTR_0018s00660	POPTR_0018s00660 (11)	scaffold_18:578912-579322(+) (11)	NA	NA	NA	AT4G32750.1	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 	LOC_Os02g17250.1	expressed protein	AC225507_2.1	hypothetical protein AC225507.11 13063-9895 E EGN_Mt090430 200	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4391.2.A1_s_at	A	A1TS	POPTR_0001s02900	POPTR_0001s02900 (11)	scaffold_1:2288151-2289229(-) (11)	NA	NA	NA	AT1G32400.3	tobamovirus multiplication 2A 	LOC_Os08g18044.2	"tetraspanin family protein, putative, expressed"	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.4391.3.S1_at	A	A1MS	POPTR_0001s02900	POPTR_0001s02900 (11)	scaffold_1:2292966-2293006(-) (11)	NA	NA	NA	AT1G32400.3	tobamovirus multiplication 2A 	LOC_Os08g18044.2	"tetraspanin family protein, putative, expressed"	Medtr5g014270.1	CD9/CD37/CD63 antigen 	NA	NA	GO:0016021|integral to membrane
Ptp.4392.1.S1_at	A	A1TS	POPTR_0004s21790	POPTR_0004s21790 (10)	scaffold_4:20795294-20795853(-) (10)	NA	Q99JW2	Aminoacylase-1	AT4G38220.2	Peptidase M20/M25/M40 family protein 	LOC_Os08g40110.2	"peptidase, putative, expressed"	Medtr1g046740.1	Peptidase M20 	GO:0019538|protein metabolic process||GO:0043170|macromolecule metabolic process||GO:0006508|proteolysis	GO:0046983|protein dimerization activity||GO:0008237|metallopeptidase activity	NA
Ptp.4393.1.S1_s_at	A	A1TS	POPTR_0013s04470	POPTR_0013s04470 (11)	scaffold_13:3071016-3071250(+) (11)	NA	Q86YJ7	Ankyrin repeat domain-containing protein 13B	AT3G04470.1	Ankyrin repeat family protein 	LOC_Os02g56530.1	"ankyrin repeat domain containing protein, expressed"	Medtr1g093730.1	Ankyrin 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4394.1.S1_at	A	A1TS	POPTR_0021s00770	POPTR_0021s00770 (9)	scaffold_21:439241-439506(-) (9)	NA	Q66GQ2	Uncharacterized protein At5g41620	AT1G50660.1	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). 	LOC_Os05g41910.1	expressed protein	Medtr5g099930.1	hypothetical protein 	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4395.1.S1_s_at	A	A1TS	POPTR_0008s19790	POPTR_0008s19790 (11)	scaffold_8:13649357-13650648(+) (11)	NA	Q8VXV4	Chaperone protein dnaJ 16	AT1G24120.1	ARG1-like 1 	LOC_Os02g50760.2	"heat shock protein DnaJ, putative, expressed"	Medtr5g036860.1	"Heat shock protein DnaJ, N-terminal "	NA	GO:0031072|heat shock protein binding	NA
Ptp.4396.1.S1_at	A	A1TS	POPTR_0005s26890	POPTR_0005s26890 (11)	scaffold_5:24735822-24735913(-) (11)	NA	P51659	Peroxisomal multifunctional enzyme type 2	AT1G76150.1	enoyl-CoA hydratase 2 	LOC_Os09g37280.2	"peroxisomal multifunctional enzyme type 2, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4396.1.S1_s_at	A	A1TS	POPTR_0005s26890	POPTR_0005s26890 (11)	scaffold_5:24734627-24735832(-) (11)	NA	P51659	Peroxisomal multifunctional enzyme type 2	AT1G76150.1	enoyl-CoA hydratase 2 	LOC_Os09g37280.2	"peroxisomal multifunctional enzyme type 2, putative, expressed"	NA	NA	GO:0008152|metabolic process	GO:0016491|oxidoreductase activity	NA
Ptp.4397.1.S1_at	A	A1TS	POPTR_0004s14900	POPTR_0004s14900 (11)	scaffold_4:15562049-15562322(-) (11)	NA	Q0JP99	B3 domain-containing protein Os01g0234100	AT3G19184.1	AP2/B3-like transcriptional factor family protein 	LOC_Os01g13300.1	"B3 DNA binding domain containing protein, expressed"	AC235663_5.1	Transcriptional factor B3 AC235663.1 24515-26190 H EGN_Mt090430 200	"GO:0034645|cellular macromolecule biosynthetic process||GO:0006355|""regulation of transcription, DNA-dependent"""	GO:0003677|DNA binding	NA
Ptp.4400.1.S1_at	A	A1TS	POPTR_0014s12410	POPTR_0014s12410 (11)	scaffold_14:9161434-9164682(+) (11)	NA	NA	NA	AT2G47690.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os08g44250.1	"fiber protein Fb14, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4400.1.S1_s_at	A	A1TS	POPTR_0014s12410	POPTR_0014s12410 (11)	scaffold_14:9161446-9164509(+) (11)	NA	NA	NA	AT2G47690.1	NADH-ubiquinone oxidoreductase-related 	LOC_Os08g44250.1	"fiber protein Fb14, putative"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4402.2.S1_at	A	A1TS	POPTR_0008s07980	POPTR_0008s07980 (11)	scaffold_8:4926423-4928520(-) (11)	NA	Q941Q3	Zinc finger CCCH domain-containing protein 37	AT3G12680.1	floral homeotic protein (HUA1) 	LOC_Os01g42970.2	"zinc finger C-x8-C-x5-C-x3-H type family protein, expressed"	Medtr7g089530.1	"Zinc finger, CCCH-type; Sugar transporter superfamily "	NA	GO:0003676|nucleic acid binding||GO:0008270|zinc ion binding	NA
Ptp.4403.1.S1_at	A	A1TS	POPTR_0010s18810	POPTR_0010s18810 (11)	scaffold_10:16935164-16935684(-) (11)	NA	Q921G8	Gamma-tubulin complex component 2	AT5G17410.2	Spc97 / Spc98 family of spindle pole body (SBP) component 	LOC_Os04g42330.1	"Spc97 / Spc98 family protein, putative, expressed"	Medtr8g011890.1	Spc97/Spc98 	GO:0000226|microtubule cytoskeleton organization	NA	GO:0005815|microtubule organizing center||GO:0000922|spindle pole
Ptp.4404.1.S1_at	A	A1TS	POPTR_0018s13190	POPTR_0018s13190 (11)	scaffold_18:13607826-13608472(-) (11)	NA	Q9C9W0	ABC transporter I family member 17	AT1G67940.1	non-intrinsic ABC protein 3 	LOC_Os06g48060.1	"ABC transporter, ATP-binding protein, putative, expressed"	Medtr4g154730.1	ABC transporter related 	NA	GO:0016887|ATPase activity||GO:0005524|ATP binding	NA
Ptp.4406.2.S1_a_at	A	A1TS	POPTR_0010s23280	POPTR_0010s23280 (11)	scaffold_10:19881231-19882069(-) (11)	POPTR_0008s03620 (6)	P47082	Vacuolar amino acid transporter 1	AT2G39130.1	Transmembrane amino acid transporter family protein 	LOC_Os02g01100.1	"transmembrane amino acid transporter protein, putative, expressed"	Medtr1g120430.1	"amino acid transporter family protein, putative "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4409.1.S1_at	A	A1TS	POPTR_0006s24980	POPTR_0006s24980 (11)	scaffold_6:23455082-23457657(-) (11)	NA	Q3B8G0	UPF0587 protein C1orf123 homolog	AT4G32930.1	"unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF866, eukaryotic (InterPro:IPR008584); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). "	LOC_Os01g38480.1	"GA18326-PA, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.441.1.A1_at	A	A1TS	POPTR_0012s14980	POPTR_0012s14980 (11)	scaffold_12:14659950-14660276(-) (11)	POPTR_0012s12320 (6)	O23708	Proteasome subunit alpha type-2-A	AT1G16470.2	proteasome subunit PAB1 	LOC_Os02g42320.2	"peptidase, T1 family, putative, expressed"	Medtr8g089500.1	Proteasome alpha-subunit 	GO:0006511|ubiquitin-dependent protein catabolic process	GO:0004298|threonine-type endopeptidase activity	GO:0005839|proteasome core complex
Ptp.4410.1.S1_at	A	A1TS	POPTR_0001s11200	POPTR_0001s11200 (10)	scaffold_1:8691066-8691404(+) (10)	NA	Q6GQ69	FAS-associated factor 2-B	AT4G10790.1	UBX domain-containing protein 	LOC_Os10g37630.1	"UBX domain-containing protein, putative, expressed"	NA	NA	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4411.2.S1_at	A	A1TA	POPTR_0018s11410	POPTR_0018s11410 (9)	scaffold_18:12162320-12162364(+) (11)	NA	NA	NA	NA	NA	NA	NA	Medtr8g145140.1	Protein of unknown function UPF0057 	NA	NA	GO:0016021|integral to membrane
Ptp.4412.2.S1_s_at	A	A1TS	POPTR_0006s25160	POPTR_0006s25160 (11)	scaffold_6:23590289-23590524(+) (11)	NA	Q9M077	Serine/threonine-protein kinase Aurora-1	AT4G32830.1	ataurora1 	LOC_Os01g09580.2	"CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed"	Medtr3g128170.1	Protein kinase 	GO:0044260|cellular macromolecule metabolic process||GO:0006468|protein amino acid phosphorylation	GO:0004713|protein tyrosine kinase activity||GO:0005524|ATP binding	NA
Ptp.4413.2.S1_s_at	A	A1TS	POPTR_0001s03040	POPTR_0001s03040 (11)	scaffold_1:2391885-2392593(-) (11)//scaffold_1973:2736-3311(-) (9)	POPTR_1973s00200 (8)	Q9FNX5	Dynamin-related protein 1E	AT3G60190.1	DYNAMIN-like 1E 	LOC_Os10g41820.2	"dynamin family protein, putative, expressed"	Medtr8g009280.1	Dynamin central region; Dynamin; Dynamin GTPase effector 	NA	GO:0003924|GTPase activity||GO:0005525|GTP binding	NA
Ptp.4414.1.S1_at	A	A1MS	POPTR_0004s03780	POPTR_0004s03780 (9)	scaffold_4:2637074-2637204(-) (9)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4414.2.S1_s_at	A	A1TS	POPTR_0004s03780	POPTR_0004s03780 (11)	scaffold_4:2637206-2638391(-) (11)	NA	Q54X16	UPF0559 protein	AT1G61150.6	LisH and RanBPM domains containing protein 	LOC_Os03g13220.1	expressed protein	Medtr2g014470.1	"Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; "	GO:0008150|biological_process	GO:0003674|molecular_function	GO:0005575|cellular_component
Ptp.4415.1.S1_at	A	A1TS	POPTR_0011s13810	POPTR_0011s13810 (10)	scaffold_11:16451008-16451047(+) (10)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.1	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.4415.1.S1_x_at	A	A1TS	POPTR_0011s13810	POPTR_0011s13810 (10)	scaffold_11:16450315-16451078(+) (10)	NA	Q94JV4	Protein translation factor SUI1 homolog 2	AT1G54290.1	Translation initiation factor SUI1 family protein 	LOC_Os01g58220.1	"translation initiation factor SUI1, putative, expressed"	Medtr2g097150.1	Eukaryotic translation initiation factor SUI1 	GO:0034645|cellular macromolecule biosynthetic process||GO:0006413|translational initiation	GO:0003743|translation initiation factor activity	NA
Ptp.4419.1.S1_at	A	A1TS	POPTR_0002s11330	POPTR_0002s11330 (11)	scaffold_2:8381036-8382304(+) (11)	NA	O80594	Ergosterol biosynthetic protein 28	AT1G10030.1	homolog of yeast ergosterol28 	LOC_Os12g43670.1	"ergosterol biosynthetic protein 2